The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP040247	Mycobacterium avium subsp. hominissuis strain 101034 chromosome, complete genome	5301832	37763	78324	5301832	transposase,integrase	Brevibacillus_phage(50.0%)	25	48042:48101	57865:57998
WP_007172236.1|37763_39002_-|transposase	IS110 family transposase	transposase	A0A0U3ULR1	Bacillus_phage	23.6	1.9e-06
WP_040624285.1|39415_39595_+	hypothetical protein	NA	NA	NA	NA	NA
WP_080691069.1|39879_40686_+	metal-dependent hydrolase	NA	NA	NA	NA	NA
WP_007172240.1|40732_42298_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_007172469.1|44252_44714_-	hypothetical protein	NA	NA	NA	NA	NA
WP_047324300.1|44703_46950_-|integrase	tyrosine-type recombinase/integrase	integrase	NA	NA	NA	NA
WP_033717226.1|46958_48041_-|integrase	tyrosine-type recombinase/integrase	integrase	S5MBZ0	Brevibacillus_phage	29.9	5.5e-10
48042:48101	attL	CACCACCGACTGCACCCGCAGCCCAGGACTCGTCACAGACACCGAAGATAACTGGTCCAC	NA	NA	NA	NA
WP_131727298.1|49795_50320_+	hypothetical protein	NA	NA	NA	NA	NA
WP_007172252.1|50193_50973_+|transposase	IS256 family transposase	transposase	NA	NA	NA	NA
WP_007172254.1|51325_51775_-	SRPBCC family protein	NA	NA	NA	NA	NA
WP_007172255.1|52084_52792_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_007172469.1|54074_54536_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033717226.1|56781_57864_-|integrase	tyrosine-type recombinase/integrase	integrase	S5MBZ0	Brevibacillus_phage	29.9	5.5e-10
WP_095764629.1|60642_61476_+	hypothetical protein	NA	NA	NA	NA	NA
57865:57998	attR	CACCACCGACTGCACCCGCAGCCCAGGACTCGTCACAGACACCGAAGATAACTGGTCCACAACGCATTTCCCGGCATCTCCGAACGCGTGTCGTCTACATGGTGAACAGCTTCCTCACGGCCTCAGATAACCAA	NA	NA	NA	NA
WP_085981747.1|61553_62267_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_033721558.1|62269_63139_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_007172259.1|63145_64363_+	MCE family protein	NA	NA	NA	NA	NA
WP_007172260.1|64359_65403_+	MCE family protein	NA	NA	NA	NA	NA
WP_007172261.1|65399_66965_+	MCE family protein	NA	NA	NA	NA	NA
WP_007172262.1|66961_68476_+	virulence factor Mce family protein	NA	NA	NA	NA	NA
WP_033721559.1|68478_69606_+	virulence factor Mce family protein	NA	NA	NA	NA	NA
WP_007172264.1|69611_71156_+	MCE family protein	NA	NA	NA	NA	NA
WP_019733492.1|72236_73703_+|transposase	IS1634 family transposase	transposase	NA	NA	NA	NA
WP_007172267.1|74908_75832_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011724019.1|77019_78324_-|transposase	IS256-like element IS666 family transposase	transposase	A0A2P1JQX9	Mycobacterium_phage	83.4	2.1e-210
>prophage 2
NZ_CP040247	Mycobacterium avium subsp. hominissuis strain 101034 chromosome, complete genome	5301832	88996	179581	5301832	transposase,integrase	Enterobacteria_phage(30.0%)	57	98799:98858	131618:132749
WP_062887208.1|88996_90583_+|transposase	IS21 family transposase	transposase	NA	NA	NA	NA
WP_062895396.1|90579_91371_+	ATP-binding protein	NA	U5N3V8	Enterobacteria_phage	34.9	5.0e-29
WP_062895398.1|91416_91995_+	hypothetical protein	NA	NA	NA	NA	NA
WP_062887574.1|91999_92338_+	DUF3024 domain-containing protein	NA	NA	NA	NA	NA
WP_007172277.1|92440_92728_-	4Fe-4S dicluster domain-containing protein	NA	NA	NA	NA	NA
WP_007172278.1|92754_93207_-	hypothetical protein	NA	NA	NA	NA	NA
WP_050485493.1|93194_94316_-	ferritin-like domain-containing protein	NA	NA	NA	NA	NA
WP_085981753.1|94698_95466_-	ATP-binding protein	NA	U5N3V8	Enterobacteria_phage	34.2	1.2e-32
WP_079669096.1|95504_97013_-|transposase	IS21 family transposase	transposase	NA	NA	NA	NA
98799:98858	attL	GGGAGCGTCCCGGGGAGTGGTGTAAGTGATGGCGGCGTGTCGGTCCCTGACGTAAGAGGG	NA	NA	NA	NA
WP_007172498.1|100044_101094_+|integrase	tyrosine-type recombinase/integrase	integrase	A0A166YH27	Gordonia_phage	27.1	3.8e-08
WP_007172497.1|101090_103034_+|integrase	tyrosine-type recombinase/integrase	integrase	NA	NA	NA	NA
WP_137987484.1|103288_103474_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033721569.1|103857_105366_-	carboxylesterase/lipase family protein	NA	A0A0M4JT58	Mollivirus	32.8	8.1e-28
WP_033721570.1|105498_106395_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_007172283.1|106447_106888_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_033721572.1|106936_107581_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_007172286.1|107704_109198_+	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
WP_007172287.1|109194_110292_+	alcohol dehydrogenase catalytic domain-containing protein	NA	NA	NA	NA	NA
WP_007172600.1|110334_111543_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
WP_007172288.1|111813_112359_+	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA	NA
WP_007172562.1|115665_118599_-	MMPL family transporter	NA	NA	NA	NA	NA
WP_007172563.1|118595_119015_-	hypothetical protein	NA	NA	NA	NA	NA
WP_007172294.1|119119_120313_-	cytochrome P450	NA	NA	NA	NA	NA
WP_033717422.1|120378_120960_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_033717424.1|121605_122229_-	hypothetical protein	NA	NA	NA	NA	NA
WP_087139652.1|122213_122825_-	hypothetical protein	NA	NA	NA	NA	NA
WP_007172298.1|123515_124592_+|integrase	site-specific integrase	integrase	NA	NA	NA	NA
WP_007172299.1|124588_124912_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_007172300.1|125052_126180_+|integrase	integrase	integrase	NA	NA	NA	NA
WP_047324308.1|127787_129299_+	group II intron reverse transcriptase/maturase	NA	A0A0U4J920	Pseudomonas_phage	33.0	3.0e-54
WP_080687315.1|129959_130142_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_011725525.1|130325_131558_-|transposase	IS256-like element IS1245 family transposase	transposase	A0A220NQR7	Corynebacterium_phage	51.5	2.5e-112
WP_094494180.1|131676_132789_+|transposase	IS256 family transposase	transposase	A0A220NQR7	Corynebacterium_phage	44.2	1.0e-67
131618:132749	attR	CCCTCTTACGTCAGGGACCGACACGCCGCCATCACTTACACCACTCCCCGGGACGCTCCCTGATTCTTCGAGGGACCGACCAAAGTCACTCGAGCAAAGGAATCAACGCGATGACCATTGCCCACGATATCGACCTGTCTGCCGTGCTGGCCGAACGACTCACCACCACGCACCCTGATGTGCTGCGCGAGTTGTTGGCCGCCTTCATTCACGCCCTGATGGGCGCCGAAGCCGACGCGGTGTGCGGTGCCGGCTACGGCCAGCGCAGCAGCGAGCGCACCAATTCCCGCAACGGGTATCGGCACCGCGAGTTTGACACCCGCGCAGGCACATTGGATCTGGCGATTCCCAAGCTAAGGCAAGGTTCGTACTTCCCGGACTGGCTGCTGGAACGGCGCAAACGCGCCGAGCGGGCCCTGACCACGGTGGTGGCTACCTGCTACCTGCTGGGCGTTTCGACGCGGCGGATGGACAAACTCGTCGAGACTCTGGGCATCACCAGCTTGTCGAAGTCCCAGGTCAGCGTGATGGCCAAAGAGCTCGACGCCGCGGTCGAGGCGTTCCGGACCCGGCCACTGGATGCAGGCCCGTACACGTTCATGGCTGCTGACGCCCTGGTGCTCAAGGTTCGCGAAGCAGGCCGGGTGGTCAACGTGCACGCGCTGATCGCCACCGGGGTCAACGCCGAGGGCTACCGCGAAATCCTGGGCATCGACGTCACCACCGCCGAGGACGGGGCCGGCTGGCTGACCTTCCTGCGGTCGCTGACCGCCCGCGGCCTATCAGGGGTCCGTCTGGTCACTTCCGACGCCCACGCCGGTCTGGTGGCCGCGATCGGCGCCACCCTGCCTGGGGCATCGTGGCAACGGTGTCGCACCCACTACGCCACCAACCTGATGGCCATCACTCCGAAATCATCGTGGCCGTGGGTACGCACACTACTGCATTCGGTCTTCGATCAACCTGACGCCGGTTCCGTTGCAGCCCAATATGACCGCATCATCGACGCACTGGCCGACAAGCTCCCCAAGGTCGCCGACCACCTCGAAGACGCCCGCGCCGACCTGCTCGCCTTCACCGCCTTCCCCAAACAAATTTGGCGGCAGATCTGGTCCAACAACCCACTATCCGT	NA	NA	NA	NA
WP_007168379.1|137571_138216_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_007168380.1|138265_138706_+	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_007168381.1|138758_139655_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_007168382.1|139651_139918_+	hypothetical protein	NA	NA	NA	NA	NA
WP_007168383.1|140447_141896_+	group II intron reverse transcriptase/maturase	NA	A0A0U4J920	Pseudomonas_phage	35.6	4.4e-55
WP_085981614.1|142603_143233_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_074021704.1|144632_144824_+	ferredoxin	NA	NA	NA	NA	NA
WP_007168388.1|145000_145972_+	LLM class flavin-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_033712834.1|146164_147034_-	metal-dependent hydrolase	NA	NA	NA	NA	NA
WP_046184162.1|147137_147815_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_138017789.1|147841_148513_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_007168396.1|152141_153665_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_138017790.1|153661_154729_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_007168400.1|156261_156918_+	transglutaminase domain-containing protein	NA	NA	NA	NA	NA
WP_033712837.1|158617_159760_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_062887574.1|160720_161059_-	DUF3024 domain-containing protein	NA	NA	NA	NA	NA
WP_062895396.1|161686_162478_-	ATP-binding protein	NA	U5N3V8	Enterobacteria_phage	34.9	5.0e-29
WP_138017752.1|166289_166421_-	NAD-dependent epimerase/dehydratase family protein	NA	NA	NA	NA	NA
WP_007168406.1|168282_168558_+	type II toxin-antitoxin system Phd/YefM family antitoxin	NA	NA	NA	NA	NA
WP_007168407.1|168557_168950_+	type II toxin-antitoxin system VapC family toxin	NA	NA	NA	NA	NA
WP_007168413.1|174015_174969_-	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_007168415.1|176567_177104_-	metal-dependent hydrolase	NA	NA	NA	NA	NA
WP_080576326.1|177505_178195_-	metal-dependent hydrolase	NA	NA	NA	NA	NA
WP_109233510.1|178279_179581_-|transposase	IS110 family transposase	transposase	Q9JMN8	Wolbachia_phage	28.4	5.0e-34
>prophage 3
NZ_CP040247	Mycobacterium avium subsp. hominissuis strain 101034 chromosome, complete genome	5301832	3170821	3177393	5301832		Bacillus_phage(33.33%)	8	NA	NA
WP_024636978.1|3170821_3172987_-	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	V9VI16	Lactococcus_phage	51.6	7.4e-208
WP_003874934.1|3172956_3173409_-	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	A0A142F1R4	Bacillus_phage	37.7	1.7e-13
WP_003874933.1|3173451_3173691_-	redoxin NrdH	NA	V5UN81	Mycobacterium_phage	64.5	2.0e-21
WP_076220948.1|3173766_3174033_-	hypothetical protein	NA	NA	NA	NA	NA
WP_062886253.1|3174220_3174775_-	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL77	Lactobacillus_phage	33.6	5.4e-06
WP_062886254.1|3174868_3175483_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_062886255.1|3175482_3176526_+	DNA polymerase IV	NA	F1C5A5	Cronobacter_phage	28.5	1.5e-20
WP_062886256.1|3176460_3177393_-	SDR family oxidoreductase	NA	W8CYX9	Bacillus_phage	35.9	4.6e-05
>prophage 4
NZ_CP040247	Mycobacterium avium subsp. hominissuis strain 101034 chromosome, complete genome	5301832	5182702	5240183	5301832	tRNA,bacteriocin,integrase,protease,transposase	Gordonia_phage(16.67%)	46	5184422:5184438	5246838:5246854
WP_019733270.1|5182702_5183500_-|bacteriocin	bacteriocin	bacteriocin	NA	NA	NA	NA
WP_033713095.1|5183496_5184507_-	Dyp-type peroxidase	NA	NA	NA	NA	NA
5184422:5184438	attL	TCGCCGCCGTCGTCGAC	NA	NA	NA	NA
WP_138017810.1|5184550_5185858_+	M18 family aminopeptidase	NA	NA	NA	NA	NA
WP_019733919.1|5185877_5186225_+	VOC family protein	NA	NA	NA	NA	NA
WP_003875794.1|5186225_5186447_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033717192.1|5186575_5188873_+	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	62.6	4.0e-268
WP_050593748.1|5188892_5189543_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_138017811.1|5189555_5189942_+	hypothetical protein	NA	NA	NA	NA	NA
WP_085978605.1|5190007_5191606_+	amidophosphoribosyltransferase	NA	A0A1B1ISH6	uncultured_Mediterranean_phage	29.7	1.2e-45
WP_003877203.1|5191666_5192761_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	37.9	1.0e-56
WP_003875800.1|5192840_5193026_-	DUF3073 domain-containing protein	NA	NA	NA	NA	NA
WP_011723733.1|5193172_5194267_-	folate-binding protein YgfZ	NA	NA	NA	NA	NA
WP_019732695.1|5194377_5195247_+	aminodeoxychorismate lyase	NA	NA	NA	NA	NA
WP_019732696.1|5195518_5196181_-	FABP family protein	NA	NA	NA	NA	NA
WP_003877205.1|5196326_5196629_-	DUF1416 domain-containing protein	NA	NA	NA	NA	NA
WP_003875806.1|5196630_5197464_-	sulfurtransferase	NA	NA	NA	NA	NA
WP_019732697.1|5197500_5197971_-	DUF4395 domain-containing protein	NA	NA	NA	NA	NA
WP_009974936.1|5198193_5198613_-	thioredoxin family protein	NA	NA	NA	NA	NA
WP_019732698.1|5198609_5199422_-	DUF2993 domain-containing protein	NA	NA	NA	NA	NA
WP_019732699.1|5199590_5200373_+	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	32.5	9.1e-15
WP_019732700.1|5200369_5201320_+	mycothiol synthase	NA	NA	NA	NA	NA
WP_009974939.1|5201482_5202607_+	phosphate ABC transporter substrate-binding protein PstS	NA	A0A2R8FEI2	Cedratvirus	47.7	4.5e-07
WP_003877208.1|5202658_5203702_+	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
WP_009974941.1|5203698_5204613_+	phosphate ABC transporter permease PstA	NA	NA	NA	NA	NA
WP_003875815.1|5204625_5205402_+	phosphate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	2.8e-16
WP_003875816.1|5205474_5206143_-	phosphate signaling complex protein PhoU	NA	NA	NA	NA	NA
WP_033720292.1|5206201_5208319_-	LCP family protein	NA	NA	NA	NA	NA
WP_073578938.1|5208277_5208493_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019732805.1|5208526_5209660_-|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_003875819.1|5209666_5210689_-	acyl-ACP desaturase	NA	NA	NA	NA	NA
WP_023861897.1|5210873_5211488_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019732397.1|5211556_5212630_+	DUF2236 domain-containing protein	NA	NA	NA	NA	NA
WP_011723747.1|5212646_5212850_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003877217.1|5212906_5213308_-	helix-turn-helix transcriptional regulator	NA	E4ZFI8	Streptococcus_phage	31.9	4.6e-07
WP_019732396.1|5213351_5213885_-	nucleoside deaminase	NA	S4VYZ2	Pandoravirus	39.3	5.6e-16
WP_019732395.1|5213939_5214836_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_132160402.1|5215880_5217908_+	hypothetical protein	NA	NA	NA	NA	NA
WP_062887574.1|5219366_5219705_-	DUF3024 domain-containing protein	NA	NA	NA	NA	NA
WP_009979999.1|5225913_5226708_+	ATP-binding protein	NA	U5N3V8	Enterobacteria_phage	33.9	1.6e-30
WP_132160400.1|5229275_5230346_-	hypothetical protein	NA	NA	NA	NA	NA
WP_057969464.1|5233205_5234099_+	hypothetical protein	NA	NA	NA	NA	NA
WP_094494180.1|5234303_5235416_+|transposase	IS256 family transposase	transposase	A0A220NQR7	Corynebacterium_phage	44.2	1.0e-67
WP_007172498.1|5235484_5236534_+|integrase	tyrosine-type recombinase/integrase	integrase	A0A166YH27	Gordonia_phage	27.1	3.8e-08
WP_138017812.1|5236430_5238218_+|integrase	site-specific integrase	integrase	NA	NA	NA	NA
WP_033717372.1|5238219_5238474_+	hypothetical protein	NA	NA	NA	NA	NA
WP_007172599.1|5239091_5240183_-|integrase	site-specific integrase	integrase	A0A0E3XBN7	Gordonia_phage	33.7	1.1e-42
5246838:5246854	attR	TCGCCGCCGTCGTCGAC	NA	NA	NA	NA
>prophage 1
NZ_CP040245	Mycobacterium avium subsp. hominissuis strain 101034 plasmid pMARIA, complete sequence	41578	3023	12764	41578	transposase	Mycobacterium_phage(83.33%)	7	NA	NA
WP_133438217.1|3023_3599_-	ParA family protein	NA	W0LIU2	Mycobacterium_phage	58.2	4.0e-52
WP_055577712.1|3972_4176_+	hypothetical protein	NA	NA	NA	NA	NA
WP_133438216.1|4407_5655_+	rep protein	NA	A0A286MQ55	Mycobacterium_phage	40.7	6.2e-42
WP_133438215.1|6028_8830_+	relaxase domain-containing protein	NA	V5UQN3	Mycobacterium_phage	32.3	1.3e-103
WP_137987265.1|9129_10440_+|transposase	ISL3 family transposase	transposase	A0A2H4PDF8	Mycobacterium_phage	89.1	1.9e-227
WP_055578314.1|10446_11148_-	plasmid pRiA4b ORF-3 family protein	NA	A0A2H4PDG5	Mycobacterium_phage	93.1	5.8e-130
WP_137987266.1|11498_12764_+|transposase	IS110 family transposase	transposase	Q9JMN8	Wolbachia_phage	28.9	1.3e-39
