assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_005518015.1_ASM551801v1	NZ_CP040250	Mycobacterium avium subsp. hominissuis strain 101174 chromosome, complete genome	1	626064-626195	1	CRISPRCasFinder	no		DEDDh,cas3,csa3,RT,WYL,cas4,DinG	Orphan	CGCTCGCCGAGGGGCAGGCGCTCGC	25	0	0	NA	NA	NA	2	2	Orphan	DEDDh,cas3,csa3,RT,WYL,cas4,DinG	NA|100aa|up_9|NZ_CP040250.1_615091_615391_-,NA|566aa|down_4|NZ_CP040250.1_631661_633359_+,NA|99aa|down_9|NZ_CP040250.1_637998_638295_-	NA|100aa|up_9|NZ_CP040250.1_615091_615391_-	NA	NA|385aa|up_8|NZ_CP040250.1_615942_617097_+	PRK07574, PRK07574, NAD-dependent formate dehydrogenase	NA|326aa|up_7|NZ_CP040250.1_617112_618090_-	COG4129, COG4129, Predicted membrane protein [Function unknown]	NA|123aa|up_6|NZ_CP040250.1_618298_618667_-	cd07264, VOC_like, uncharacterized subfamily of vicinal oxygen chelate (VOC) family	NA|405aa|up_5|NZ_CP040250.1_618707_619922_-	pfam13556, HTH_30, PucR C-terminal helix-turn-helix domain	NA|310aa|up_4|NZ_CP040250.1_620169_621099_-	COG0583, LysR, Transcriptional regulator [Transcription]	NA|549aa|up_3|NZ_CP040250.1_621138_622785_-	PRK08322, PRK08322, acetolactate synthase large subunit	NA|473aa|up_2|NZ_CP040250.1_622865_624284_+	PRK09406, gabD1, succinic semialdehyde dehydrogenase; Reviewed	NA|312aa|up_1|NZ_CP040250.1_624350_625286_-	PRK08326, PRK08326, R2-like ligand-binding oxidase	NA|228aa|up_0|NZ_CP040250.1_625282_625966_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|570aa|down_0|NZ_CP040250.1_626202_627912_-	cd00567, ACAD, Acyl-CoA dehydrogenase	NA|327aa|down_1|NZ_CP040250.1_628037_629018_+	pfam02126, PTE, Phosphotriesterase family	NA|409aa|down_2|NZ_CP040250.1_629048_630275_-	COG1835, COG1835, Predicted acyltransferases [Lipid metabolism]	NA|419aa|down_3|NZ_CP040250.1_630396_631653_+	pfam11271, DUF3068, Protein of unknown function (DUF3068)	NA|566aa|down_4|NZ_CP040250.1_631661_633359_+	NA	NA|389aa|down_5|NZ_CP040250.1_633342_634509_-	cd03801, GT4_PimA-like, phosphatidyl-myo-inositol mannosyltransferase	NA|256aa|down_6|NZ_CP040250.1_634590_635358_+	pfam08241, Methyltransf_11, Methyltransferase domain	NA|494aa|down_7|NZ_CP040250.1_635403_636885_+	cd07139, ALDH_AldA-Rv0768, Mycobacterium tuberculosis aldehyde dehydrogenase  AldA-like	NA|196aa|down_8|NZ_CP040250.1_637409_637997_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|99aa|down_9|NZ_CP040250.1_637998_638295_-	NA
GCF_005518015.1_ASM551801v1	NZ_CP040250	Mycobacterium avium subsp. hominissuis strain 101174 chromosome, complete genome	2	853926-854046	2	CRISPRCasFinder	no		DEDDh,cas3,csa3,RT,WYL,cas4,DinG	Orphan	GCTGCAGATCCACGGCACCGCCGACGACCGGG	32	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas3,csa3,RT,WYL,cas4,DinG	NA,NA|110aa|down_9|NZ_CP040250.1_866304_866634_-	NA|520aa|up_9|NZ_CP040250.1_843038_844598_-	COG2072, TrkA, Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]	NA|185aa|up_8|NZ_CP040250.1_844731_845286_+	TIGR03618, Rv1155_F420, PPOX class probable F420-dependent enzyme	NA|157aa|up_7|NZ_CP040250.1_845286_845757_-	cd07825, SRPBCC_7, Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins	NA|274aa|up_6|NZ_CP040250.1_845866_846688_+	TIGR03971, short-chain_dehydrogenase/reductase_SDR, SDR family mycofactocin-dependent oxidoreductase	NA|71aa|up_5|NZ_CP040250.1_846773_846986_+	cd00371, HMA, Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones	NA|763aa|up_4|NZ_CP040250.1_846982_849271_+	cd02094, P-type_ATPase_Cu-like, P-type heavy metal-transporting ATPase, similar to human copper-transporting ATPases, ATP7A and ATP7B	NA|470aa|up_3|NZ_CP040250.1_849406_850816_+	COG0627, COG0627, Predicted esterase [General function prediction only]	NA|270aa|up_2|NZ_CP040250.1_851053_851863_+	cd10917, CE4_NodB_like_6s_7s, Catalytic NodB homology domain of rhizobial NodB-like proteins	NA|152aa|up_1|NZ_CP040250.1_851869_852325_-	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|360aa|up_0|NZ_CP040250.1_852806_853886_+	pfam01548, DEDD_Tnp_IS110, Transposase	NA|113aa|down_0|NZ_CP040250.1_858414_858753_+	pfam11225, DUF3024, Protein of unknown function (DUF3024)	NA|187aa|down_1|NZ_CP040250.1_859457_860018_+	pfam17940, TetR_C_31, Tetracyclin repressor-like, C-terminal domain	NA|203aa|down_2|NZ_CP040250.1_860060_860669_-	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family	NA|277aa|down_3|NZ_CP040250.1_860740_861571_+	pfam00561, Abhydrolase_1, alpha/beta hydrolase fold	NA|254aa|down_4|NZ_CP040250.1_861646_862408_+	cd05233, SDR_c, classical (c) SDRs	NA|547aa|down_5|NZ_CP040250.1_862494_864135_+	PRK13388, PRK13388, acyl-CoA synthetase; Provisional	NA|217aa|down_6|NZ_CP040250.1_864073_864724_-	pfam10400, Vir_act_alpha_C, Virulence activator alpha C-term	NA|144aa|down_7|NZ_CP040250.1_864720_865152_-	pfam01796, OB_aCoA_assoc, DUF35 OB-fold domain, acyl-CoA-associated	NA|389aa|down_8|NZ_CP040250.1_865148_866315_-	cd00829, SCP-x_thiolase, Thiolase domain associated with sterol carrier protein (SCP)-x isoform and related proteins; SCP-2  has multiple roles in intracellular lipid circulation and metabolism	NA|110aa|down_9|NZ_CP040250.1_866304_866634_-	NA
GCF_005518015.1_ASM551801v1	NZ_CP040250	Mycobacterium avium subsp. hominissuis strain 101174 chromosome, complete genome	3	2179126-2179369	3	CRISPRCasFinder	no		DEDDh,cas3,csa3,RT,WYL,cas4,DinG	Orphan	GCGGCGGGTGCCGGAGCGGACGGCG	25	0	0	NA	NA	NA	4	4	Orphan	DEDDh,cas3,csa3,RT,WYL,cas4,DinG	NA|67aa|up_9|NZ_CP040250.1_2171814_2172015_+,NA|49aa|up_0|NZ_CP040250.1_2178485_2178632_+,NA	NA|67aa|up_9|NZ_CP040250.1_2171814_2172015_+	NA	NA|781aa|up_8|NZ_CP040250.1_2172158_2174501_+	COG2409, COG2409, Predicted drug exporters of the RND superfamily [General function prediction only]	NA|212aa|up_7|NZ_CP040250.1_2174583_2175219_+	pfam08241, Methyltransf_11, Methyltransferase domain	NA|238aa|up_6|NZ_CP040250.1_2175226_2175940_-	PRK00481, PRK00481, NAD-dependent deacetylase; Provisional	NA|122aa|up_5|NZ_CP040250.1_2175977_2176343_+	COG1725, COG1725, Predicted transcriptional regulators [Transcription]	NA|175aa|up_4|NZ_CP040250.1_2176394_2176919_-	COG3797, COG3797, Uncharacterized protein conserved in bacteria [Function unknown]	NA|148aa|up_3|NZ_CP040250.1_2176993_2177437_+	TIGR03618, Rv1155_F420, PPOX class probable F420-dependent enzyme	NA|75aa|up_2|NZ_CP040250.1_2177495_2177720_+	pfam17227, DUF5302, Family of unknown function (DUF5302)	NA|192aa|up_1|NZ_CP040250.1_2177881_2178457_+	TIGR03252, TIGR03252, uncharacterized HhH-GPD family protein	NA|49aa|up_0|NZ_CP040250.1_2178485_2178632_+	NA	NA|197aa|down_0|NZ_CP040250.1_2179852_2180443_-	PRK07994, PRK07994, DNA polymerase III subunits gamma and tau; Validated	NA|438aa|down_1|NZ_CP040250.1_2180688_2182002_+	PRK13375, pimE, mannosyltransferase; Provisional	NA|95aa|down_2|NZ_CP040250.1_2182094_2182379_-	PRK00823, phhB, pterin-4-alpha-carbinolamine dehydratase; Validated	NA|258aa|down_3|NZ_CP040250.1_2182509_2183283_-	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type	NA|131aa|down_4|NZ_CP040250.1_2183452_2183845_+	cd03425, MutT_pyrophosphohydrolase, The MutT pyrophosphohydrolase is a prototypical Nudix hydrolase that catalyzes the hydrolysis of nucleoside and deoxynucleoside triphosphates (NTPs and dNTPs) by substitution at a beta-phosphorus to yield a nucleotide monophosphate (NMP) and inorganic pyrophosphate (PPi)	NA|1231aa|down_5|NZ_CP040250.1_2184263_2187956_+	COG5013, NarG, Nitrate reductase alpha subunit [Energy production and conversion]	NA|539aa|down_6|NZ_CP040250.1_2187957_2189574_+	COG1140, NarY, Nitrate reductase beta subunit [Energy production and conversion]	NA|228aa|down_7|NZ_CP040250.1_2189570_2190254_+	COG2180, NarJ, Nitrate reductase delta subunit [Energy production and conversion]	NA|244aa|down_8|NZ_CP040250.1_2190246_2190978_+	pfam02665, Nitrate_red_gam, Nitrate reductase gamma subunit	NA|633aa|down_9|NZ_CP040250.1_2191140_2193039_+	COG1217, TypA, Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
GCF_005518015.1_ASM551801v1	NZ_CP040250	Mycobacterium avium subsp. hominissuis strain 101174 chromosome, complete genome	4	2508341-2508419	4	CRISPRCasFinder	no		DEDDh,cas3,csa3,RT,WYL,cas4,DinG	Orphan	ATCAATTGCGCCACTCCTTTTCATCGC	27	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas3,csa3,RT,WYL,cas4,DinG	NA|133aa|up_1|NZ_CP040250.1_2506242_2506641_-,NA|213aa|down_5|NZ_CP040250.1_2515557_2516196_+	NA|416aa|up_9|NZ_CP040250.1_2497212_2498460_+	PRK00073, pgk, phosphoglycerate kinase; Provisional	NA|262aa|up_8|NZ_CP040250.1_2498456_2499242_+	PRK00042, tpiA, triosephosphate isomerase; Provisional	NA|78aa|up_7|NZ_CP040250.1_2499272_2499506_+	PRK06870, secG, preprotein translocase subunit SecG; Reviewed	NA|306aa|up_6|NZ_CP040250.1_2499523_2500441_-	TIGR03564, F420_MSMEG_4879, F420-dependent oxidoreductase, MSMEG_4879 family	NA|936aa|up_5|NZ_CP040250.1_2500544_2503352_+	PRK00009, PRK00009, phosphoenolpyruvate carboxylase; Reviewed	NA|260aa|up_4|NZ_CP040250.1_2503427_2504207_+	pfam14023, DUF4239, Protein of unknown function (DUF4239)	NA|329aa|up_3|NZ_CP040250.1_2504306_2505293_+	cd19084, AKR_AKR11B1-like, AKR11B1/AKR11B2 subfamily of aldo-keto reductase (AKR)	NA|310aa|up_2|NZ_CP040250.1_2505294_2506224_-	cd11599, HDAC_classII_2, Histone deacetylases and histone-like deacetylases, classII	NA|133aa|up_1|NZ_CP040250.1_2506242_2506641_-	NA	NA|252aa|up_0|NZ_CP040250.1_2506681_2507437_-	pfam01182, Glucosamine_iso, Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase	NA|515aa|down_0|NZ_CP040250.1_2508425_2509970_-	PRK05722, PRK05722, glucose-6-phosphate 1-dehydrogenase; Validated	NA|374aa|down_1|NZ_CP040250.1_2509966_2511088_-	PRK03343, PRK03343, transaldolase; Validated	NA|700aa|down_2|NZ_CP040250.1_2511104_2513204_-	COG0021, TktA, Transketolase [Carbohydrate transport and metabolism]	NA|309aa|down_3|NZ_CP040250.1_2513460_2514387_+	PRK04375, PRK04375, protoheme IX farnesyltransferase; Provisional	NA|325aa|down_4|NZ_CP040250.1_2514563_2515538_-	cd05286, QOR2, Quinone oxidoreductase (QOR)	NA|213aa|down_5|NZ_CP040250.1_2515557_2516196_+	NA	NA|318aa|down_6|NZ_CP040250.1_2516145_2517099_-	COG1612, CtaA, Uncharacterized protein required for cytochrome oxidase assembly [Posttranslational modification, protein turnover, chaperones]	NA|260aa|down_7|NZ_CP040250.1_2517273_2518053_-	TIGR00025, Mtu_efflux, ABC transporter efflux protein, DrrB family	NA|303aa|down_8|NZ_CP040250.1_2518049_2518958_-	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|568aa|down_9|NZ_CP040250.1_2518981_2520685_-	TIGR03459, crt_membr, carotene biosynthesis associated membrane protein
GCF_005518015.1_ASM551801v1	NZ_CP040250	Mycobacterium avium subsp. hominissuis strain 101174 chromosome, complete genome	5	3317614-3317712	5	CRISPRCasFinder	no		DEDDh,cas3,csa3,RT,WYL,cas4,DinG	Orphan	CCGCTCGGGGTCGGGCCGCAACCG	24	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas3,csa3,RT,WYL,cas4,DinG	NA|193aa|up_1|NZ_CP040250.1_3311221_3311800_-,NA	NA|186aa|up_9|NZ_CP040250.1_3304418_3304976_-	COG0545, FkpA, FKBP-type peptidyl-prolyl cis-trans isomerases 1 [Posttranslational modification, protein turnover, chaperones]	NA|469aa|up_8|NZ_CP040250.1_3305625_3307032_+	pfam00668, Condensation, Condensation domain	NA|107aa|up_7|NZ_CP040250.1_3307084_3307405_-	pfam00226, DnaJ, DnaJ domain	NA|140aa|up_6|NZ_CP040250.1_3307717_3308137_-	pfam00011, HSP20, Hsp20/alpha crystallin family	NA|127aa|up_5|NZ_CP040250.1_3308249_3308630_+	cd04766, HTH_HspR, Helix-Turn-Helix DNA binding domain of the HspR transcription regulator	NA|148aa|up_4|NZ_CP040250.1_3308689_3309133_-	pfam00011, HSP20, Hsp20/alpha crystallin family	NA|410aa|up_3|NZ_CP040250.1_3309297_3310527_+	PRK01565, PRK01565, thiamine biosynthesis protein ThiI; Provisional	NA|113aa|up_2|NZ_CP040250.1_3310878_3311217_-	pfam11225, DUF3024, Protein of unknown function (DUF3024)	NA|193aa|up_1|NZ_CP040250.1_3311221_3311800_-	NA	NA|492aa|up_0|NZ_CP040250.1_3315342_3316818_-	PRK06524, PRK06524, biotin carboxylase-like protein; Validated	NA|362aa|down_0|NZ_CP040250.1_3317786_3318872_-	pfam13358, DDE_3, DDE superfamily endonuclease	NA|104aa|down_1|NZ_CP040250.1_3318986_3319298_-	pfam05305, DUF732, Protein of unknown function (DUF732)	NA|134aa|down_2|NZ_CP040250.1_3319448_3319850_-	cd08355, TioX_like, Micromonospora sp	NA|281aa|down_3|NZ_CP040250.1_3319803_3320646_-	pfam12833, HTH_18, Helix-turn-helix domain	NA|146aa|down_4|NZ_CP040250.1_3320869_3321307_+	pfam00553, CBM_2, Cellulose binding domain	NA|218aa|down_5|NZ_CP040250.1_3322242_3322896_+	TIGR03401, Uncharacterized_protein_YFL061W/YNL335W, HD domain protein, cyanamide hydratase family	NA|607aa|down_6|NZ_CP040250.1_3322919_3324740_-	COG1022, FAA1, Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism]	NA|295aa|down_7|NZ_CP040250.1_3324884_3325769_+	TIGR02427, b-ketoadipate_enol-lactone_hydrolase, 3-oxoadipate enol-lactonase	NA|198aa|down_8|NZ_CP040250.1_3325789_3326383_-	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family	NA|273aa|down_9|NZ_CP040250.1_3326490_3327309_+	COG1804, CaiB, Predicted acyl-CoA transferases/carnitine dehydratase [Energy production and conversion]
