assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_005484945.1_ASM548494v1	NZ_CP034035	Brenneria rubrifaciens strain 6D370 chromosome, complete genome	1	199088-199186	1	CRISPRCasFinder	no		PD-DExK,RT,cas3,DEDDh,DinG,csa3	Orphan	GTTGAAAAACGCGCCCGGCGTTTT	24	0	0	NA	NA	NA	1	1	Orphan	PD-DExK,RT,cas3,DEDDh,DinG,csa3	NA,NA	NA|294aa|up_9|NZ_CP034035.1_188211_189093_-	pfam06325, PrmA, Ribosomal protein L11 methyltransferase (PrmA)	NA|484aa|up_8|NZ_CP034035.1_189111_190563_-	PRK09442, panF, sodium/pantothenate symporter	NA|81aa|up_7|NZ_CP034035.1_190552_190795_-	PRK10633, PRK10633, hypothetical protein; Provisional	NA|283aa|up_6|NZ_CP034035.1_191076_191925_+	PRK06096, PRK06096, molybdenum transport protein ModD; Provisional	NA|448aa|up_5|NZ_CP034035.1_191991_193335_-	PRK08591, PRK08591, acetyl-CoA carboxylase biotin carboxylase subunit; Validated	NA|155aa|up_4|NZ_CP034035.1_193346_193811_-	PRK06302, PRK06302, acetyl-CoA carboxylase biotin carboxyl carrier protein	NA|151aa|up_3|NZ_CP034035.1_193836_194289_-	PRK05395, PRK05395, type II 3-dehydroquinate dehydratase	NA|326aa|up_2|NZ_CP034035.1_194490_195468_-	cd08288, MDR_yhdh, Yhdh putative quinone oxidoreductases	NA|643aa|up_1|NZ_CP034035.1_195601_197530_+	PRK11059, PRK11059, regulatory protein CsrD; Provisional	NA|348aa|up_0|NZ_CP034035.1_197847_198891_+	PRK13927, PRK13927, rod shape-determining protein MreB; Provisional	NA|326aa|down_0|NZ_CP034035.1_199213_200191_+	TIGR00219, Cell_shape-determining_protein_MreC, rod shape-determining protein MreC	NA|163aa|down_1|NZ_CP034035.1_200187_200676_+	PRK11060, PRK11060, rod shape-determining protein MreD; Provisional	NA|198aa|down_2|NZ_CP034035.1_200685_201279_+	PRK00032, PRK00032, septum formation inhibitor Maf	NA|490aa|down_3|NZ_CP034035.1_201268_202738_+	PRK11712, PRK11712, ribonuclease G; Provisional	NA|1273aa|down_4|NZ_CP034035.1_202780_206599_+	PRK10899, PRK10899, AsmA2 domain-containing protein	NA|482aa|down_5|NZ_CP034035.1_206669_208115_+	PRK10735, tldD, protease TldD; Provisional	NA|314aa|down_6|NZ_CP034035.1_208295_209237_-	PRK10632, PRK10632, HTH-type transcriptional activator AaeR	NA|68aa|down_7|NZ_CP034035.1_209573_209777_+	PRK11594, PRK11594, efflux system membrane protein; Provisional	NA|316aa|down_8|NZ_CP034035.1_209786_210734_+	PRK10559, PRK10559, p-hydroxybenzoic acid efflux pump subunit AaeA	NA|653aa|down_9|NZ_CP034035.1_210738_212697_+	PRK10631, PRK10631, p-hydroxybenzoic acid efflux subunit AaeB; Provisional
GCF_005484945.1_ASM548494v1	NZ_CP034035	Brenneria rubrifaciens strain 6D370 chromosome, complete genome	2	361073-361179	2	CRISPRCasFinder	no		PD-DExK,RT,cas3,DEDDh,DinG,csa3	Orphan	CGACGTTGAAAATCGCTCCCGGCGATTTTTTAT	33	0	0	NA	NA	NA	1	1	Orphan	PD-DExK,RT,cas3,DEDDh,DinG,csa3	NA|113aa|up_9|NZ_CP034035.1_348900_349239_-,NA	NA|113aa|up_9|NZ_CP034035.1_348900_349239_-	NA	NA|404aa|up_8|NZ_CP034035.1_349389_350601_-	PRK08013, PRK08013, oxidoreductase; Provisional	NA|393aa|up_7|NZ_CP034035.1_350639_351818_-	PRK05732, PRK05732, 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated	NA|440aa|up_6|NZ_CP034035.1_351851_353171_-	PRK10879, PRK10879, proline aminopeptidase P II; Provisional	NA|195aa|up_5|NZ_CP034035.1_353231_353816_-	PRK01736, PRK01736, hypothetical protein; Reviewed	NA|110aa|up_4|NZ_CP034035.1_354004_354334_+	PRK10972, PRK10972, cell division protein ZapA	NA|205aa|up_3|NZ_CP034035.1_354638_355253_+	PRK10333, PRK10333, 5-formyltetrahydrofolate cyclo-ligase family protein; Provisional	NA|939aa|up_2|NZ_CP034035.1_355694_358511_+	PRK00750, lysK, lysyl-tRNA synthetase; Reviewed	NA|385aa|up_1|NZ_CP034035.1_358507_359662_+	cd17477, MFS_YcaD_like, YcaD and similar transporters of the Major Facilitator Superfamily	NA|411aa|up_0|NZ_CP034035.1_359795_361028_-	PRK08099, PRK08099, multifunctional transcriptional regulator/nicotinamide-nucleotide adenylyltransferase/ribosylnicotinamide kinase NadR	NA|326aa|down_0|NZ_CP034035.1_362579_363557_-	PRK11133, serB, phosphoserine phosphatase; Provisional	NA|233aa|down_1|NZ_CP034035.1_363734_364433_+	PRK11246, PRK11246, YtjB family periplasmic protein	NA|530aa|down_2|NZ_CP034035.1_364586_366176_+	PRK00741, prfC, peptide chain release factor 3; Provisional	NA|205aa|down_3|NZ_CP034035.1_366652_367267_+	PRK10568, PRK10568, molecular chaperone OsmY	NA|54aa|down_4|NZ_CP034035.1_367366_367528_+	COG5487, COG5487, Small integral membrane protein [Function unknown]	NA|63aa|down_5|NZ_CP034035.1_367649_367838_+	PRK10428, PRK10428, hypothetical protein; Provisional	NA|271aa|down_6|NZ_CP034035.1_367858_368671_+	PRK11449, PRK11449, metal-dependent hydrolase	NA|426aa|down_7|NZ_CP034035.1_368933_370211_+	COG1972, NupC, Nucleoside permease [Nucleotide transport and metabolism]	NA|239aa|down_8|NZ_CP034035.1_370311_371028_+	COG2977, EntD, Phosphopantetheinyl transferase component of siderophore synthetase [Secondary metabolites biosynthesis, transport, and catabolism]	NA|650aa|down_9|NZ_CP034035.1_371214_373164_-	COG4771, FepA, Outer membrane receptor for ferrienterochelin and colicins [Inorganic ion transport and metabolism]
GCF_005484945.1_ASM548494v1	NZ_CP034035	Brenneria rubrifaciens strain 6D370 chromosome, complete genome	3	371090-371190	3	CRISPRCasFinder	no		PD-DExK,RT,cas3,DEDDh,DinG,csa3	Orphan	GTGCGCGGCGTTTTTTTATGGCGGGCCT	28	0	0	NA	NA	NA	1	1	Orphan	PD-DExK,RT,cas3,DEDDh,DinG,csa3	NA,NA	NA|462aa|up_9|NZ_CP034035.1_361175_362561_-	PRK11823, PRK11823, DNA repair protein RadA; Provisional	NA|326aa|up_8|NZ_CP034035.1_362579_363557_-	PRK11133, serB, phosphoserine phosphatase; Provisional	NA|233aa|up_7|NZ_CP034035.1_363734_364433_+	PRK11246, PRK11246, YtjB family periplasmic protein	NA|530aa|up_6|NZ_CP034035.1_364586_366176_+	PRK00741, prfC, peptide chain release factor 3; Provisional	NA|205aa|up_5|NZ_CP034035.1_366652_367267_+	PRK10568, PRK10568, molecular chaperone OsmY	NA|54aa|up_4|NZ_CP034035.1_367366_367528_+	COG5487, COG5487, Small integral membrane protein [Function unknown]	NA|63aa|up_3|NZ_CP034035.1_367649_367838_+	PRK10428, PRK10428, hypothetical protein; Provisional	NA|271aa|up_2|NZ_CP034035.1_367858_368671_+	PRK11449, PRK11449, metal-dependent hydrolase	NA|426aa|up_1|NZ_CP034035.1_368933_370211_+	COG1972, NupC, Nucleoside permease [Nucleotide transport and metabolism]	NA|239aa|up_0|NZ_CP034035.1_370311_371028_+	COG2977, EntD, Phosphopantetheinyl transferase component of siderophore synthetase [Secondary metabolites biosynthesis, transport, and catabolism]	NA|650aa|down_0|NZ_CP034035.1_371214_373164_-	COG4771, FepA, Outer membrane receptor for ferrienterochelin and colicins [Inorganic ion transport and metabolism]	NA|423aa|down_1|NZ_CP034035.1_373267_374536_-	cd17324, MFS_NepI_like, Purine ribonucleoside efflux pump NepI and similar transporters of the Major Facilitator Superfamily	NA|399aa|down_2|NZ_CP034035.1_374869_376066_+	COG1169, MenF, Isochorismate synthase [Coenzyme metabolism / Secondary metabolites biosynthesis, transport, and catabolism]	NA|542aa|down_3|NZ_CP034035.1_376062_377688_+	PRK10946, entE, (2,3-dihydroxybenzoyl)adenylate synthase	NA|293aa|down_4|NZ_CP034035.1_377698_378577_+	cd01013, isochorismatase, Isochorismatase, also known as 2,3 dihydro-2,3 dihydroxybenzoate synthase, catalyses the conversion of isochorismate, in the presence of water, to 2,3-dihydroxybenzoate and pyruvate, via the hydrolysis of a vinyl ether, an uncommon reaction in biological systems	NA|1050aa|down_5|NZ_CP034035.1_378576_381726_+	PRK10252, entF, enterobactin non-ribosomal peptide synthetase EntF	NA|257aa|down_6|NZ_CP034035.1_381737_382508_+	PRK08220, PRK08220, 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated	NA|2110aa|down_7|NZ_CP034035.1_382531_388861_+	PRK12316, PRK12316, peptide synthase; Provisional	NA|691aa|down_8|NZ_CP034035.1_388857_390930_+	cd12116, A_NRPS_Ta1_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including salinosporamide A polyketide synthase	NA|762aa|down_9|NZ_CP034035.1_391377_393663_+	PRK11249, katE, hydroperoxidase II; Provisional
GCF_005484945.1_ASM548494v1	NZ_CP034035	Brenneria rubrifaciens strain 6D370 chromosome, complete genome	4	958269-958382	4	CRISPRCasFinder	no		PD-DExK,RT,cas3,DEDDh,DinG,csa3	Orphan	CGTTGCTGCGCAACGCTGAAAAACGCGCCAGGCGTTTTTTT	41	0	0	NA	NA	NA	1	1	Orphan	PD-DExK,RT,cas3,DEDDh,DinG,csa3	NA|73aa|up_9|NZ_CP034035.1_942566_942785_-,NA	NA|73aa|up_9|NZ_CP034035.1_942566_942785_-	NA	NA|244aa|up_8|NZ_CP034035.1_943019_943751_+	PRK10225, PRK10225, Uxu operon transcriptional regulator	NA|498aa|up_7|NZ_CP034035.1_943778_945272_-	PRK15037, PRK15037, D-mannonate oxidoreductase; Provisional	NA|399aa|up_6|NZ_CP034035.1_945563_946760_+	PRK03906, PRK03906, mannonate dehydratase; Provisional	NA|174aa|up_5|NZ_CP034035.1_947443_947965_+	PRK03731, aroL, shikimate kinase AroL	NA|95aa|up_4|NZ_CP034035.1_948120_948405_+	PRK10579, PRK10579, pyrimidine/purine nucleoside phosphorylase	NA|398aa|up_3|NZ_CP034035.1_949278_950472_+	pfam01609, DDE_Tnp_1, Transposase DDE domain	NA|310aa|up_2|NZ_CP034035.1_952108_953038_-	PRK00321, rdgC, recombination associated protein; Reviewed	NA|1228aa|up_1|NZ_CP034035.1_953231_956915_-	PRK10246, PRK10246, exonuclease subunit SbcC; Provisional	NA|409aa|up_0|NZ_CP034035.1_956911_958138_-	PRK10966, PRK10966, exonuclease subunit SbcD; Provisional	NA|230aa|down_0|NZ_CP034035.1_958458_959148_+	PRK10161, PRK10161, phosphate response regulator transcription factor PhoB	NA|441aa|down_1|NZ_CP034035.1_959175_960498_+	PRK11006, phoR, phosphate regulon sensor histidine kinase PhoR	NA|346aa|down_2|NZ_CP034035.1_960630_961668_+	cd13566, PBP2_phosphate, Substrate binding domain of putative ABC-type phosphate transporter, a member of the type 2 periplasmic binding fold superfamily	NA|369aa|down_3|NZ_CP034035.1_961883_962990_+	PRK06520, PRK06520, 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase	NA|440aa|down_4|NZ_CP034035.1_963507_964827_+	PRK15433, PRK15433, branched-chain amino acid transporter carrier protein BrnQ	NA|454aa|down_5|NZ_CP034035.1_964898_966260_+	PRK10580, proY, putative proline-specific permease; Provisional	NA|424aa|down_6|NZ_CP034035.1_966344_967616_-	pfam00924, MS_channel, Mechanosensitive ion channel	NA|201aa|down_7|NZ_CP034035.1_967805_968408_-	PRK15000, PRK15000, peroxiredoxin C	NA|194aa|down_8|NZ_CP034035.1_968607_969189_-	COG3124, COG3124, Uncharacterized protein conserved in bacteria [Function unknown]	NA|356aa|down_9|NZ_CP034035.1_969302_970370_+	PRK00147, queA, S-adenosylmethionine:tRNA ribosyltransferase-isomerase; Provisional
GCF_005484945.1_ASM548494v1	NZ_CP034035	Brenneria rubrifaciens strain 6D370 chromosome, complete genome	5	1059027-1059134	5	CRISPRCasFinder	no		PD-DExK,RT,cas3,DEDDh,DinG,csa3	Orphan	GCAGGCGGCGTTGAAAAGCGCGCCTGCGTTTTTTTA	36	0	0	NA	NA	NA	1	1	Orphan	PD-DExK,RT,cas3,DEDDh,DinG,csa3	NA|132aa|up_4|NZ_CP034035.1_1054140_1054536_-,NA	NA|277aa|up_9|NZ_CP034035.1_1048565_1049396_-	COG3735, COG3735, Uncharacterized protein conserved in bacteria [Function unknown]	NA|840aa|up_8|NZ_CP034035.1_1049478_1051998_-	PRK10671, copA, copper-exporting P-type ATPase CopA	NA|143aa|up_7|NZ_CP034035.1_1052181_1052610_+	PRK10227, PRK10227, HTH-type transcriptional regulator CueR	NA|152aa|up_6|NZ_CP034035.1_1052612_1053068_-	COG1585, COG1585, Membrane protein implicated in regulation of membrane protease activity [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]	NA|305aa|up_5|NZ_CP034035.1_1053067_1053982_-	COG0330, HflC, Membrane protease subunits, stomatin/prohibitin homologs [Posttranslational modification, protein turnover, chaperones]	NA|132aa|up_4|NZ_CP034035.1_1054140_1054536_-	NA	NA|279aa|up_3|NZ_CP034035.1_1054909_1055746_+	cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters	NA|282aa|up_2|NZ_CP034035.1_1055742_1056588_+	COG0600, TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism]	NA|324aa|up_1|NZ_CP034035.1_1056624_1057596_+	COG0715, TauA, ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components [Inorganic ion transport and metabolism]	NA|457aa|up_0|NZ_CP034035.1_1057611_1058982_+	COG0154, GatA, Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases [Translation, ribosomal structure and biogenesis]	NA|266aa|down_0|NZ_CP034035.1_1059187_1059985_+	cd01015, CSHase, N-carbamoylsarcosine amidohydrolase (CSHase) hydrolyzes N-carbamoylsarcosine to sarcosine, carbon dioxide and ammonia	NA|87aa|down_1|NZ_CP034035.1_1060008_1060269_-	PRK10713, PRK10713, 2Fe-2S ferredoxin-like protein	NA|377aa|down_2|NZ_CP034035.1_1060273_1061404_-	PRK09101, nrdB, ribonucleotide-diphosphate reductase subunit beta; Reviewed	NA|762aa|down_3|NZ_CP034035.1_1061528_1063814_-	PRK09103, PRK09103, ribonucleoside-diphosphate reductase subunit alpha	NA|243aa|down_4|NZ_CP034035.1_1064152_1064881_-	PRK05134, PRK05134, bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG	NA|881aa|down_5|NZ_CP034035.1_1065093_1067736_+	PRK05560, PRK05560, DNA gyrase subunit A; Validated	NA|951aa|down_6|NZ_CP034035.1_1067849_1070702_+	PRK10841, PRK10841, two-component system sensor histidine kinase RcsC	NA|219aa|down_7|NZ_CP034035.1_1070832_1071489_-	PRK10840, PRK10840, transcriptional regulator RcsB; Provisional	NA|902aa|down_8|NZ_CP034035.1_1071586_1074292_-	PRK10618, PRK10618, phosphotransfer intermediate protein in two-component regulatory system with RcsBC; Provisional	NA|389aa|down_9|NZ_CP034035.1_1074308_1075475_-	cd17393, MFS_MosC_like, Membrane protein MosC and similar proteins of the Major Facilitator Superfamily of transporters
GCF_005484945.1_ASM548494v1	NZ_CP034035	Brenneria rubrifaciens strain 6D370 chromosome, complete genome	6	3085363-3085460	6	CRISPRCasFinder	no		PD-DExK,RT,cas3,DEDDh,DinG,csa3	Orphan	CAAAAAAACGCCGGGCGCGTTTT	23	0	0	NA	NA	NA	1	1	Orphan	PD-DExK,RT,cas3,DEDDh,DinG,csa3	NA,NA	NA|402aa|up_9|NZ_CP034035.1_3071608_3072814_+	PRK09257, PRK09257, aromatic amino acid transaminase	NA|140aa|up_8|NZ_CP034035.1_3072943_3073363_-	COG0432, COG0432, Uncharacterized conserved protein [Function unknown]	NA|945aa|up_7|NZ_CP034035.1_3073427_3076262_-	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|179aa|up_6|NZ_CP034035.1_3076589_3077126_+	PRK09010, PRK09010, single-stranded DNA-binding protein; Provisional	NA|310aa|up_5|NZ_CP034035.1_3077393_3078323_+	PRK09557, PRK09557, fructokinase; Reviewed	NA|121aa|up_4|NZ_CP034035.1_3078476_3078839_-	PRK05248, PRK05248, hypothetical protein; Provisional	NA|866aa|up_3|NZ_CP034035.1_3079032_3081630_-	PRK09238, PRK09238, bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase; Validated	NA|542aa|up_2|NZ_CP034035.1_3082027_3083653_+	PRK15041, PRK15041, methyl-accepting chemotaxis protein	NA|226aa|up_1|NZ_CP034035.1_3083718_3084396_-	pfam13649, Methyltransf_25, Methyltransferase domain	NA|289aa|up_0|NZ_CP034035.1_3084460_3085327_-	COG2819, COG2819, Predicted hydrolase of the alpha/beta superfamily [General function prediction only]	NA|757aa|down_0|NZ_CP034035.1_3085613_3087884_-	PRK13524, PRK13524, FepA family TonB-dependent siderophore receptor	NA|355aa|down_1|NZ_CP034035.1_3088209_3089274_+	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription]	NA|443aa|down_2|NZ_CP034035.1_3089390_3090719_+	pfam03972, MmgE_PrpD, MmgE/PrpD family	NA|476aa|down_3|NZ_CP034035.1_3093104_3094532_-	PRK06467, PRK06467, dihydrolipoamide dehydrogenase; Reviewed	NA|528aa|down_4|NZ_CP034035.1_3094748_3096332_-	PRK11854, aceF, pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated	NA|888aa|down_5|NZ_CP034035.1_3096345_3099009_-	PRK09405, aceE, pyruvate dehydrogenase subunit E1; Reviewed	NA|255aa|down_6|NZ_CP034035.1_3099184_3099949_-	PRK09464, pdhR, pyruvate dehydrogenase complex transcriptional repressor PdhR	NA|453aa|down_7|NZ_CP034035.1_3100594_3101953_+	PRK10238, PRK10238, aromatic amino acid transporter AroP	NA|285aa|down_8|NZ_CP034035.1_3102037_3102892_-	pfam17113, AmpE, Regulatory signalling modulator protein AmpE	NA|192aa|down_9|NZ_CP034035.1_3102888_3103464_-	PRK11789, PRK11789, 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD
