The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP034035	Brenneria rubrifaciens strain 6D370 chromosome, complete genome	4028093	382531	438096	4028093	tRNA,holin,transposase,integrase	Tupanvirus(25.0%)	41	422777:422792	438258:438273
WP_137715228.1|382531_388861_+	non-ribosomal peptide synthetase	NA	A0A2K9KZV5	Tupanvirus	25.7	1.8e-84
WP_137712485.1|388857_390930_+	amino acid adenylation domain-containing protein	NA	A0A2K9KZV5	Tupanvirus	29.9	1.5e-48
WP_137712486.1|391377_393663_+	catalase HPII	NA	A0A2K9L0T1	Tupanvirus	48.4	1.6e-139
WP_137712487.1|393844_394543_-	helix-turn-helix transcriptional regulator	NA	M9NZE3	Enterobacteria_phage	43.6	2.0e-45
WP_137712488.1|394928_395627_+	antitermination protein	NA	K7PGS0	Enterobacteria_phage	37.2	5.4e-27
WP_137712489.1|395871_396210_+|holin	phage holin, lambda family	holin	Q8SBE1	Shigella_phage	45.9	5.3e-20
WP_137712490.1|396480_397791_+	glycoside hydrolase family 68 protein	NA	NA	NA	NA	NA
WP_137712491.1|398539_399901_+	esterase-like activity of phytase family protein	NA	NA	NA	NA	NA
WP_137712492.1|401736_402123_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_137712493.1|402209_403007_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_137712494.1|403007_403820_+	MFS transporter	NA	NA	NA	NA	NA
WP_137712495.1|405884_407108_-	MFS transporter	NA	NA	NA	NA	NA
WP_137712496.1|407076_407307_-	hypothetical protein	NA	NA	NA	NA	NA
WP_137712497.1|407904_408546_+	hypothetical protein	NA	NA	NA	NA	NA
WP_137712498.1|408618_409503_+	phytanoyl-CoA dioxygenase family protein	NA	NA	NA	NA	NA
WP_137712499.1|409529_410513_+	phytanoyl-CoA dioxygenase family protein	NA	NA	NA	NA	NA
WP_137712500.1|410522_412169_+	radical SAM protein	NA	NA	NA	NA	NA
WP_137712501.1|412165_412957_+	hypothetical protein	NA	NA	NA	NA	NA
WP_137712502.1|412967_414170_-|tRNA	tyrosine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_137712503.1|415711_416602_-|integrase	site-specific integrase	integrase	NA	NA	NA	NA
WP_137712504.1|418232_418670_+	DUF29 domain-containing protein	NA	A0A0K2QQ08	Ralstonia_phage	64.8	2.9e-47
WP_137712505.1|419892_421012_+|transposase	IS3 family transposase	transposase	S5WIU1	Leptospira_phage	42.8	6.0e-52
WP_009114544.1|421084_421273_+	hypothetical protein	NA	NA	NA	NA	NA
WP_137712506.1|421353_422613_-|integrase	tyrosine-type recombinase/integrase	integrase	B7SYF8	Stenotrophomonas_phage	44.1	7.9e-85
422777:422792	attL	TGGTGCCCGGACTCGG	NA	NA	NA	NA
WP_136155584.1|423031_423325_+	DUF1778 domain-containing protein	NA	NA	NA	NA	NA
WP_137712507.1|423321_423816_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_137712508.1|424392_425400_+	nucleoid-associated protein	NA	NA	NA	NA	NA
WP_137712509.1|425392_426319_+	hypothetical protein	NA	NA	NA	NA	NA
WP_137712510.1|426315_427452_+	hypothetical protein	NA	NA	NA	NA	NA
WP_137712511.1|427723_428074_+	hypothetical protein	NA	NA	NA	NA	NA
WP_137712512.1|428095_429892_-	hypothetical protein	NA	NA	NA	NA	NA
WP_137712513.1|430165_431334_-|transposase	IS3 family transposase	transposase	Q716C2	Shigella_phage	87.8	2.5e-162
WP_121574721.1|431462_431768_-	type II toxin-antitoxin system toxin CcdB	NA	NA	NA	NA	NA
WP_121574722.1|431770_431989_-	type II toxin-antitoxin system antitoxin CcdA	NA	NA	NA	NA	NA
WP_137712514.1|432229_432511_-	transcriptional regulator	NA	A0A2I7S995	Vibrio_phage	60.6	3.2e-15
WP_137712515.1|432659_432974_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_137712516.1|433160_433475_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_121588677.1|434075_434333_+	antitoxin	NA	NA	NA	NA	NA
WP_137712517.1|434333_434666_+	type II toxin-antitoxin system PemK/MazF family toxin	NA	NA	NA	NA	NA
WP_137712518.1|435474_436356_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_137712519.1|436824_438096_-|integrase	integrase arm-type DNA-binding domain-containing protein	integrase	Q7M297	Enterobacteria_phage	36.1	1.6e-69
438258:438273	attR	TGGTGCCCGGACTCGG	NA	NA	NA	NA
>prophage 2
NZ_CP034035	Brenneria rubrifaciens strain 6D370 chromosome, complete genome	4028093	2021420	2033556	4028093	tRNA	Acanthocystis_turfacea_Chlorella_virus(12.5%)	13	NA	NA
WP_137713770.1|2021420_2022086_+	hexitol phosphatase HxpB	NA	M1H9H9	Acanthocystis_turfacea_Chlorella_virus	24.8	3.8e-06
WP_137713771.1|2022142_2022598_-	RcnB family protein	NA	NA	NA	NA	NA
WP_137713772.1|2022937_2023270_-	osmotically-inducible lipoprotein OsmE	NA	NA	NA	NA	NA
WP_137713773.1|2023494_2024319_+	ammonia-dependent NAD(+) synthetase	NA	G3MA24	Bacillus_virus	52.7	5.7e-68
WP_137713774.1|2024541_2026260_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	31.0	9.5e-57
WP_009112984.1|2026315_2026612_-	integration host factor subunit alpha	NA	A0A0H3UZA0	Geobacillus_virus	40.0	7.1e-13
WP_137713775.1|2026616_2029004_-|tRNA	phenylalanine--tRNA ligase subunit beta	tRNA	A0A1L3IZU3	BeAn_58058_virus	29.9	3.9e-08
WP_137713776.1|2029019_2030003_-|tRNA	phenylalanine--tRNA ligase subunit alpha	tRNA	A0A2H4UW22	Bodo_saltans_virus	42.6	8.4e-34
WP_121514181.1|2030182_2030227_-	pheST operon leader peptide PheM	NA	NA	NA	NA	NA
WP_009112987.1|2030385_2030742_-	50S ribosomal protein L20	NA	NA	NA	NA	NA
WP_004235358.1|2030784_2030982_-	50S ribosomal protein L35	NA	NA	NA	NA	NA
WP_137713777.1|2031081_2031624_-	translation initiation factor IF-3	NA	A0A2L0UZ54	Agrobacterium_phage	33.5	6.3e-15
WP_137713778.1|2031627_2033556_-|tRNA	threonine--tRNA ligase	tRNA	A0A2K9L297	Tupanvirus	37.6	1.7e-131
>prophage 3
NZ_CP034035	Brenneria rubrifaciens strain 6D370 chromosome, complete genome	4028093	3709979	3799878	4028093	protease,portal,head,terminase,plate,tail,tRNA,transposase,capsid,integrase,holin,lysis	Enterobacteria_phage(28.26%)	90	3726512:3726528	3807044:3807060
WP_137714961.1|3709979_3711148_-|transposase	IS3 family transposase	transposase	Q716C2	Shigella_phage	87.8	6.2e-161
WP_137714962.1|3712075_3713035_-	bifunctional biotin--[acetyl-CoA-carboxylase] ligase/biotin operon repressor BirA	NA	NA	NA	NA	NA
WP_137714963.1|3713031_3714069_-	UDP-N-acetylmuramate dehydrogenase	NA	NA	NA	NA	NA
WP_137714964.1|3719754_3720612_-	glutamate racemase	NA	NA	NA	NA	NA
WP_137714965.1|3720556_3722398_-	TonB-dependent vitamin B12 receptor BtuB	NA	A0A0P0I887	Acinetobacter_phage	31.7	3.8e-11
WP_137714966.1|3722825_3723929_+|tRNA	tRNA (uridine(54)-C5)-methyltransferase TrmA	tRNA	NA	NA	NA	NA
WP_137714967.1|3723974_3724346_-	YijD family membrane protein	NA	NA	NA	NA	NA
WP_137714968.1|3724385_3725027_-	HTH-type transcriptional repressor FabR	NA	NA	NA	NA	NA
WP_137715394.1|3725215_3726616_+	Si-specific NAD(P)(+) transhydrogenase	NA	NA	NA	NA	NA
3726512:3726528	attL	GAAGGCAATACCGTCGA	NA	NA	NA	NA
WP_137714969.1|3726598_3727516_-	DNA-binding transcriptional regulator OxyR	NA	NA	NA	NA	NA
WP_137714970.1|3727950_3728847_-	methylenetetrahydrofolate reductase	NA	NA	NA	NA	NA
WP_137714971.1|3729087_3731523_-	bifunctional aspartate kinase/homoserine dehydrogenase II	NA	NA	NA	NA	NA
WP_137714972.1|3731525_3732683_-	cystathionine gamma-synthase	NA	NA	NA	NA	NA
WP_136157964.1|3732870_3733188_+	met regulon transcriptional regulator MetJ	NA	NA	NA	NA	NA
WP_137714973.1|3733351_3733567_-	50S ribosomal protein L31	NA	NA	NA	NA	NA
WP_137714974.1|3733777_3735976_+	primosomal protein N'	NA	NA	NA	NA	NA
WP_137714975.1|3736247_3737291_+	DNA-binding transcriptional regulator CytR	NA	NA	NA	NA	NA
WP_137714976.1|3737375_3738194_+	cell division protein FtsN	NA	NA	NA	NA	NA
WP_137714977.1|3738281_3738812_+|protease	ATP-dependent protease subunit HslV	protease	NA	NA	NA	NA
WP_137714978.1|3738821_3740153_+	HslU--HslV peptidase ATPase subunit	NA	A0A173GFL6	Erwinia_phage	28.8	4.5e-46
WP_137714979.1|3740376_3741294_+	1,4-dihydroxy-2-naphthoate polyprenyltransferase	NA	NA	NA	NA	NA
WP_137714980.1|3741416_3741902_+	ribonuclease E activity regulator RraA	NA	NA	NA	NA	NA
WP_137714981.1|3742021_3742261_-	septal ring assembly protein ZapB	NA	NA	NA	NA	NA
WP_137714982.1|3742775_3743615_+	aquaporin	NA	M1HWZ0	Paramecium_bursaria_Chlorella_virus	27.7	4.8e-14
WP_137714983.1|3743671_3745183_+	glycerol kinase GlpK	NA	NA	NA	NA	NA
WP_137714984.1|3745310_3746321_+	class II fructose-bisphosphatase	NA	NA	NA	NA	NA
WP_137714985.1|3746473_3747220_+	ferredoxin--NADP(+) reductase	NA	NA	NA	NA	NA
WP_137714986.1|3747362_3748829_+	hypothetical protein	NA	NA	NA	NA	NA
WP_137714987.1|3748895_3749318_-	DUF805 domain-containing protein	NA	NA	NA	NA	NA
WP_137714988.1|3749590_3750181_+	YiiQ family protein	NA	NA	NA	NA	NA
WP_137714989.1|3750291_3751059_+	triose-phosphate isomerase	NA	NA	NA	NA	NA
WP_137714990.1|3751147_3752251_-	agmatine deiminase	NA	M1I1E2	Acanthocystis_turfacea_Chlorella_virus	49.4	4.6e-97
WP_137714991.1|3752254_3753139_-	N-carbamoylputrescine amidase	NA	A7IVZ1	Paramecium_bursaria_Chlorella_virus	50.5	4.8e-81
WP_137714992.1|3753405_3754419_-	hypothetical protein	NA	NA	NA	NA	NA
WP_137714993.1|3754475_3754973_-	hypothetical protein	NA	NA	NA	NA	NA
WP_137714994.1|3755171_3756134_-	6-phosphofructokinase	NA	NA	NA	NA	NA
WP_137714995.1|3756376_3757282_-	CDF family cation-efflux transporter FieF	NA	NA	NA	NA	NA
WP_137714996.1|3757292_3758480_-	sugar transporter	NA	NA	NA	NA	NA
WP_137714997.1|3758841_3759432_-	HupE/UreJ family protein	NA	NA	NA	NA	NA
WP_137714998.1|3759925_3760753_-	DUF2971 domain-containing protein	NA	NA	NA	NA	NA
WP_137714999.1|3760896_3761145_-	ogr/Delta-like zinc finger family protein	NA	A0A2I8TV89	Erwinia_phage	46.7	1.8e-09
WP_137715000.1|3761181_3762324_-	phage late control D family protein	NA	B9A7A9	Serratia_phage	73.7	1.6e-153
WP_137715001.1|3762471_3763656_+|tail	phage tail sheath family protein	tail	A0A0A7NV69	Enterobacteria_phage	69.9	3.2e-157
WP_137715002.1|3763656_3764172_+|tail	phage major tail tube protein	tail	A0A0A7NPV8	Enterobacteria_phage	65.3	1.3e-62
WP_137715003.1|3764298_3764607_+|tail	phage tail assembly protein	tail	B9A7B2	Serratia_phage	64.9	2.1e-23
WP_137715004.1|3764627_3764768_+|tail	GpE family phage tail protein	tail	Q858U8	Yersinia_virus	60.5	1.7e-09
WP_137715005.1|3764754_3767700_+|tail	phage tail tape measure protein	tail	A0A0A7NRZ9	Enterobacteria_phage	47.7	5.9e-224
WP_137715006.1|3767712_3768204_+|tail	phage tail protein	tail	A0A0A7NV65	Enterobacteria_phage	67.1	5.4e-58
WP_137715007.1|3768307_3768586_-	hypothetical protein	NA	NA	NA	NA	NA
WP_137715008.1|3770603_3771212_-|tail	phage tail protein I	tail	F1BUP2	Erwinia_phage	54.5	1.6e-59
WP_137715009.1|3771204_3772101_-|plate	baseplate assembly protein	plate	A0A0A7NPY5	Enterobacteria_phage	63.8	1.5e-98
WP_137715010.1|3772087_3772456_-|plate	baseplate assembly protein	plate	A0A0A7NQ90	Enterobacteria_phage	62.6	2.8e-35
WP_137715011.1|3772452_3773034_-|plate	phage baseplate assembly protein V	plate	A0A0A7NRZ3	Enterobacteria_phage	61.3	7.1e-65
WP_137715012.1|3773030_3773669_-	phage virion morphogenesis protein	NA	A0A0M4RCU1	Salmonella_phage	48.5	1.5e-47
WP_137715013.1|3773665_3774127_-|tail	phage tail protein	tail	A0A0A7NPU6	Enterobacteria_phage	54.5	6.9e-39
WP_137715014.1|3774137_3774335_-	hypothetical protein	NA	NA	NA	NA	NA
WP_137715015.1|3774252_3774702_-|lysis	LysB family phage lysis regulatory protein	lysis	A0A1S6KZX8	Salmonella_phage	38.7	6.6e-18
WP_137715016.1|3774698_3775187_-	glycoside hydrolase family 104 protein	NA	S4TUB1	Salmonella_phage	73.6	1.7e-67
WP_121575103.1|3775179_3775491_-|holin	holin	holin	A0A0F7LA12	Escherichia_phage	78.3	1.8e-30
WP_137715017.1|3775493_3775694_-|tail	phage tail protein	tail	A0A0A7NV57	Enterobacteria_phage	64.6	1.6e-16
WP_137715018.1|3775693_3776191_-|head	head completion/stabilization protein	head	B9A7B7	Serratia_phage	71.5	1.2e-60
WP_137715019.1|3776293_3777208_-|terminase	terminase	terminase	B9A7B6	Serratia_phage	73.9	9.1e-91
WP_137715020.1|3777253_3778300_-|capsid	phage major capsid protein, P2 family	capsid	A0A0M3ULA3	Salmonella_phage	56.3	2.2e-109
WP_137715021.1|3778322_3779156_-|capsid	GPO family capsid scaffolding protein	capsid	B9A7B4	Serratia_phage	83.8	6.5e-128
WP_137715022.1|3779317_3781039_+	oxidoreductase	NA	A0A0A7NV54	Enterobacteria_phage	65.6	4.8e-226
WP_137715023.1|3781040_3782087_+|portal	phage portal protein	portal	A0A0A7NPT9	Enterobacteria_phage	70.0	6.6e-146
WP_137715024.1|3782557_3782926_-	helix-turn-helix transcriptional regulator	NA	A0A1S5NNJ5	Burkholderia_phage	33.9	6.2e-06
WP_137715025.1|3782996_3783257_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	A0A1S5NR91	Burkholderia_phage	37.2	5.7e-06
WP_137715026.1|3783339_3784044_-	DNA adenine methylase	NA	A0A0M4S5U3	Salmonella_phage	61.9	8.3e-76
WP_137715027.1|3784137_3786681_-	replication endonuclease	NA	E5G6L9	Salmonella_phage	37.0	2.3e-131
WP_137715028.1|3786680_3787700_-	DNA cytosine methyltransferase	NA	W0LM09	Edwardsiella_phage	58.9	4.4e-110
WP_137715029.1|3787696_3788527_-	Dam family site-specific DNA-(adenine-N6)-methyltransferase	NA	A0A0M4QWR0	Salmonella_phage	58.9	2.3e-85
WP_137715030.1|3788523_3789414_-	3'-5' exoribonuclease	NA	K7PLW7	Enterobacteria_phage	49.5	1.2e-44
WP_137715031.1|3789410_3789644_-	DUF2732 domain-containing protein	NA	NA	NA	NA	NA
WP_137715032.1|3789714_3790050_-	DUF5347 domain-containing protein	NA	E5G6L5	Salmonella_phage	55.9	9.5e-22
WP_137715033.1|3790055_3790256_-	DUF2724 domain-containing protein	NA	NA	NA	NA	NA
WP_137715034.1|3790248_3790482_-	DUF4761 domain-containing protein	NA	A0A0M5M1I3	Salmonella_phage	48.3	2.1e-07
WP_137715035.1|3790457_3790730_-	hypothetical protein	NA	A0A0M4RCW1	Salmonella_phage	70.5	9.7e-33
WP_137715036.1|3790762_3791329_+	hypothetical protein	NA	NA	NA	NA	NA
WP_137715037.1|3791306_3791516_-	hypothetical protein	NA	NA	NA	NA	NA
WP_137715038.1|3791677_3791971_+	helix-turn-helix domain-containing protein	NA	Q1JS21	Enterobacteria_phage	79.4	9.1e-37
WP_137715039.1|3792074_3793064_+|integrase	tyrosine-type recombinase/integrase	integrase	A0A0M4RTQ0	Salmonella_phage	64.5	1.7e-119
WP_137715040.1|3793299_3793809_-	periplasmic heavy metal sensor	NA	NA	NA	NA	NA
WP_137715041.1|3793961_3794660_+	envelope stress response regulator transcription factor CpxR	NA	Q6XM27	Feldmannia_irregularis_virus	32.0	9.6e-08
WP_137715042.1|3794656_3796027_+	envelope stress sensor histidine kinase CpxA	NA	W8CYF6	Bacillus_phage	25.5	6.9e-18
WP_137715043.1|3796042_3796507_-|tRNA	tRNA (cytidine(34)-2'-O)-methyltransferase	tRNA	NA	NA	NA	NA
WP_137715044.1|3796669_3796966_+	hypothetical protein	NA	NA	NA	NA	NA
WP_137715045.1|3796975_3797932_-	AEC family transporter	NA	NA	NA	NA	NA
WP_137715046.1|3798055_3798805_-	glycerophosphodiester phosphodiesterase	NA	M1HTS7	Paramecium_bursaria_Chlorella_virus	26.0	5.3e-12
WP_137715047.1|3798804_3799878_-	sn-glycerol-3-phosphate import ATP-binding protein UgpC	NA	G9BWD6	Planktothrix_phage	34.5	3.6e-22
3807044:3807060	attR	TCGACGGTATTGCCTTC	NA	NA	NA	NA
