assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_005311005.1_ASM531100v1	NZ_CP039849	Lactobacillus animalis strain LL1 chromosome, complete genome	1	319111-319220	1	CRISPRCasFinder	no	csa3	csa3,WYL,cas3,DEDDh,DinG,csn2,cas2,cas1,cas9	Type I-A	GCACGACAAAAAATCAGTGCGGACAAAAT	29	0	0	NA	NA	NA	1	1	Orphan	csa3,WYL,cas3,DEDDh,DinG,csn2,cas2,cas1,cas9	NA|89aa|up_9|NZ_CP039849.1_310557_310824_+,NA|72aa|up_8|NZ_CP039849.1_310842_311058_+,NA|60aa|up_1|NZ_CP039849.1_316750_316930_-,NA|134aa|down_2|NZ_CP039849.1_322606_323008_+	NA|89aa|up_9|NZ_CP039849.1_310557_310824_+	NA	NA|72aa|up_8|NZ_CP039849.1_310842_311058_+	NA	NA|248aa|up_7|NZ_CP039849.1_311147_311891_+	pfam07722, Peptidase_C26, Peptidase C26	NA|339aa|up_6|NZ_CP039849.1_311943_312960_-	PRK09422, PRK09422, ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional	NA|456aa|up_5|NZ_CP039849.1_313133_314501_-	PRK02471, PRK02471, bifunctional glutamate--cysteine ligase GshA/glutathione synthetase GshB	csa3|212aa|up_4|NZ_CP039849.1_314716_315352_+	cd00158, RHOD, Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein	NA|105aa|up_3|NZ_CP039849.1_315443_315758_+	TIGR01068, Thioredoxin-like_protein_slr0233, thioredoxin	NA|309aa|up_2|NZ_CP039849.1_315776_316703_+	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase	NA|60aa|up_1|NZ_CP039849.1_316750_316930_-	NA	NA|455aa|up_0|NZ_CP039849.1_317169_318534_+	cd01031, EriC, ClC chloride channel EriC	NA|637aa|down_0|NZ_CP039849.1_319281_321192_-	TIGR00792, Melibiose_carrier_protein, sugar (Glycoside-Pentoside-Hexuronide) transporter	NA|335aa|down_1|NZ_CP039849.1_321357_322362_-	cd01544, PBP1_GalR, ligand-binding domain of DNA transcription repressor GalR which is one of two regulatory proteins involved in galactose transport and metabolism	NA|134aa|down_2|NZ_CP039849.1_322606_323008_+	NA	NA|647aa|down_3|NZ_CP039849.1_323356_325297_+	TIGR01168, M_protein_serotype, Gram-positive signal peptide, YSIRK family	NA|1822aa|down_4|NZ_CP039849.1_325330_330796_+	pfam17965, MucBP_2, Mucin binding domain	NA|276aa|down_5|NZ_CP039849.1_331016_331844_+	pfam17966, Mub_B2, Mub B2-like domain	NA|117aa|down_6|NZ_CP039849.1_331900_332251_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|172aa|down_7|NZ_CP039849.1_332439_332955_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|151aa|down_8|NZ_CP039849.1_332966_333419_-	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|267aa|down_9|NZ_CP039849.1_333588_334389_+	PRK10513, PRK10513, sugar phosphate phosphatase; Provisional
GCF_005311005.1_ASM531100v1	NZ_CP039849	Lactobacillus animalis strain LL1 chromosome, complete genome	2	1285614-1286509	2,1,1	CRISPRCasFinder,CRT,PILER-CR	no	DEDDh,csn2,cas2,cas1,cas9	csa3,WYL,cas3,DEDDh,DinG,csn2,cas2,cas1,cas9	Type II-C,Type II-A,Type II-B	GTTTTGGAGTCATACAAAACAACATAGCTCTAAAAC,GTTTTGGAGTCATACAAAACAACATAGCTCTAAAAC,GTTTTGGAGTCATACAAAACAACATAGCTCTAAAAC	36,36,36	1	1	1285916-1285945	NZ_CP039849.1_1260362-1260391	II-A,II-B:II-A,II-B:II-A,II-B	13,13,12	13	TypeII-C,TypeII-A,TypeII-B	csa3,WYL,cas3,DEDDh,DinG,csn2,cas2,cas1,cas9	NA,NA|66aa|down_4|NZ_CP039849.1_1299860_1300058_+,NA|65aa|down_5|NZ_CP039849.1_1300668_1300863_-,NA|160aa|down_6|NZ_CP039849.1_1300927_1301407_-,NA|170aa|down_7|NZ_CP039849.1_1301576_1302086_-	NA|574aa|up_9|NZ_CP039849.1_1277155_1278877_-	PRK09194, PRK09194, prolyl-tRNA synthetase; Provisional	NA|425aa|up_8|NZ_CP039849.1_1278904_1280179_-	TIGR00054, Putative_zinc_metalloprotease_slr1821, RIP metalloprotease RseP	NA|263aa|up_7|NZ_CP039849.1_1280212_1281001_-	pfam01148, CTP_transf_1, Cytidylyltransferase family	NA|259aa|up_6|NZ_CP039849.1_1281004_1281781_-	PRK14830, PRK14830, undecaprenyl pyrophosphate synthase; Provisional	NA|188aa|up_5|NZ_CP039849.1_1281886_1282450_-	PRK00083, frr, ribosome recycling factor; Reviewed	NA|241aa|up_4|NZ_CP039849.1_1282458_1283181_-	cd04254, AAK_UMPK-PyrH-Ec, UMP kinase (UMPK)-Ec, the microbial/chloroplast uridine monophosphate kinase (uridylate kinase) enzyme that catalyzes UMP phosphorylation and plays a key role in pyrimidine nucleotide biosynthesis; regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway)	NA|293aa|up_3|NZ_CP039849.1_1283394_1284273_+	cd02696, MurNAc-LAA, N-acetylmuramoyl-L-alanine amidase or MurNAc-LAA (also known as peptidoglycan aminohydrolase, NAMLA amidase, NAMLAA, Amidase 3, and peptidoglycan amidase; EC 3	NA|94aa|up_2|NZ_CP039849.1_1284460_1284742_-	PRK05435, rpmA, 50S ribosomal protein L27; Validated	NA|109aa|up_1|NZ_CP039849.1_1284764_1285091_-	cd16332, Prp-like, ribosomal-processing cysteine protease Prp and similar proteins	NA|103aa|up_0|NZ_CP039849.1_1285112_1285421_-	PRK05573, rplU, 50S ribosomal protein L21; Validated	csn2|224aa|down_0|NZ_CP039849.1_1286577_1287249_-	cd09758, Csn2, CRISPR/Cas system-associated protein Csn2	cas2|111aa|down_1|NZ_CP039849.1_1287245_1287578_-	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	cas1|292aa|down_2|NZ_CP039849.1_1287567_1288443_-	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1	cas9|1311aa|down_3|NZ_CP039849.1_1293543_1297476_-	pfam16592, Cas9_REC, REC lobe of CRISPR-associated endonuclease Cas9	NA|66aa|down_4|NZ_CP039849.1_1299860_1300058_+	NA	NA|65aa|down_5|NZ_CP039849.1_1300668_1300863_-	NA	NA|160aa|down_6|NZ_CP039849.1_1300927_1301407_-	NA	NA|170aa|down_7|NZ_CP039849.1_1301576_1302086_-	NA	NA|112aa|down_8|NZ_CP039849.1_1302257_1302593_-	pfam02452, PemK_toxin, PemK-like, MazF-like toxin of type II toxin-antitoxin system	NA|91aa|down_9|NZ_CP039849.1_1302592_1302865_-	smart00966, SpoVT_AbrB, SpoVT / AbrB like domain
GCF_005311005.1_ASM531100v1	NZ_CP039849	Lactobacillus animalis strain LL1 chromosome, complete genome	3	1292772-1293269	2,2,3	CRT,PILER-CR,CRISPRCasFinder	no	csn2,cas2,cas1,cas9	csa3,WYL,cas3,DEDDh,DinG,csn2,cas2,cas1,cas9	Type II-C,Type II-A,Type II-B	GTTTTGGAGTCATACAAAACAACATAGCTCTAAAAC,GTTTTGGAGTCATACAAAACAACATAGCTCTAAAAC,GTTTTGGAGTCATACAAAACAACATAGCTCTAAAAC	36,36,36	0	0	NA	NA	II-A,II-B:II-A,II-B:II-A,II-B	7,6,6	7	TypeII-C,TypeII-A,TypeII-B	csa3,WYL,cas3,DEDDh,DinG,csn2,cas2,cas1,cas9	NA,NA|66aa|down_1|NZ_CP039849.1_1299860_1300058_+,NA|65aa|down_2|NZ_CP039849.1_1300668_1300863_-,NA|160aa|down_3|NZ_CP039849.1_1300927_1301407_-,NA|170aa|down_4|NZ_CP039849.1_1301576_1302086_-	NA|259aa|up_9|NZ_CP039849.1_1281004_1281781_-	PRK14830, PRK14830, undecaprenyl pyrophosphate synthase; Provisional	NA|188aa|up_8|NZ_CP039849.1_1281886_1282450_-	PRK00083, frr, ribosome recycling factor; Reviewed	NA|241aa|up_7|NZ_CP039849.1_1282458_1283181_-	cd04254, AAK_UMPK-PyrH-Ec, UMP kinase (UMPK)-Ec, the microbial/chloroplast uridine monophosphate kinase (uridylate kinase) enzyme that catalyzes UMP phosphorylation and plays a key role in pyrimidine nucleotide biosynthesis; regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway)	NA|293aa|up_6|NZ_CP039849.1_1283394_1284273_+	cd02696, MurNAc-LAA, N-acetylmuramoyl-L-alanine amidase or MurNAc-LAA (also known as peptidoglycan aminohydrolase, NAMLA amidase, NAMLAA, Amidase 3, and peptidoglycan amidase; EC 3	NA|94aa|up_5|NZ_CP039849.1_1284460_1284742_-	PRK05435, rpmA, 50S ribosomal protein L27; Validated	NA|109aa|up_4|NZ_CP039849.1_1284764_1285091_-	cd16332, Prp-like, ribosomal-processing cysteine protease Prp and similar proteins	NA|103aa|up_3|NZ_CP039849.1_1285112_1285421_-	PRK05573, rplU, 50S ribosomal protein L21; Validated	csn2|224aa|up_2|NZ_CP039849.1_1286577_1287249_-	cd09758, Csn2, CRISPR/Cas system-associated protein Csn2	cas2|111aa|up_1|NZ_CP039849.1_1287245_1287578_-	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	cas1|292aa|up_0|NZ_CP039849.1_1287567_1288443_-	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1	cas9|1311aa|down_0|NZ_CP039849.1_1293543_1297476_-	pfam16592, Cas9_REC, REC lobe of CRISPR-associated endonuclease Cas9	NA|66aa|down_1|NZ_CP039849.1_1299860_1300058_+	NA	NA|65aa|down_2|NZ_CP039849.1_1300668_1300863_-	NA	NA|160aa|down_3|NZ_CP039849.1_1300927_1301407_-	NA	NA|170aa|down_4|NZ_CP039849.1_1301576_1302086_-	NA	NA|112aa|down_5|NZ_CP039849.1_1302257_1302593_-	pfam02452, PemK_toxin, PemK-like, MazF-like toxin of type II toxin-antitoxin system	NA|91aa|down_6|NZ_CP039849.1_1302592_1302865_-	smart00966, SpoVT_AbrB, SpoVT / AbrB like domain	NA|156aa|down_7|NZ_CP039849.1_1302993_1303461_-	cd01043, DPS, DPS protein, ferritin-like diiron-binding domain	NA|357aa|down_8|NZ_CP039849.1_1303776_1304847_-	pfam07669, Eco57I, Eco57I restriction-modification methylase	NA|1083aa|down_9|NZ_CP039849.1_1304809_1308058_-	pfam04851, ResIII, Type III restriction enzyme, res subunit
GCF_005311005.1_ASM531100v1	NZ_CP039849	Lactobacillus animalis strain LL1 chromosome, complete genome	4	1297800-1298365	3,4,3	PILER-CR,CRISPRCasFinder,CRT	no	csn2,cas2,cas1,cas9	csa3,WYL,cas3,DEDDh,DinG,csn2,cas2,cas1,cas9	Type II-C,Type II-A,Type II-B	GTTTTGGAGTCATACAAAACAACATAGCTCTAAAAC,GTTTTAGAGCTATGTTGTTTTGTATGACTCCAAAAC,GTTTTAGAGCTATGTTGTTTTGTATGACTCCAAAAC	36,36,36	0	0	NA	NA	II-A,II-B:II-A,II-B:II-A,II-B	7,8,8	8	TypeII-C,TypeII-A,TypeII-B	csa3,WYL,cas3,DEDDh,DinG,csn2,cas2,cas1,cas9	NA,NA|66aa|down_0|NZ_CP039849.1_1299860_1300058_+,NA|65aa|down_1|NZ_CP039849.1_1300668_1300863_-,NA|160aa|down_2|NZ_CP039849.1_1300927_1301407_-,NA|170aa|down_3|NZ_CP039849.1_1301576_1302086_-,NA|302aa|down_9|NZ_CP039849.1_1308050_1308956_-	NA|188aa|up_9|NZ_CP039849.1_1281886_1282450_-	PRK00083, frr, ribosome recycling factor; Reviewed	NA|241aa|up_8|NZ_CP039849.1_1282458_1283181_-	cd04254, AAK_UMPK-PyrH-Ec, UMP kinase (UMPK)-Ec, the microbial/chloroplast uridine monophosphate kinase (uridylate kinase) enzyme that catalyzes UMP phosphorylation and plays a key role in pyrimidine nucleotide biosynthesis; regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway)	NA|293aa|up_7|NZ_CP039849.1_1283394_1284273_+	cd02696, MurNAc-LAA, N-acetylmuramoyl-L-alanine amidase or MurNAc-LAA (also known as peptidoglycan aminohydrolase, NAMLA amidase, NAMLAA, Amidase 3, and peptidoglycan amidase; EC 3	NA|94aa|up_6|NZ_CP039849.1_1284460_1284742_-	PRK05435, rpmA, 50S ribosomal protein L27; Validated	NA|109aa|up_5|NZ_CP039849.1_1284764_1285091_-	cd16332, Prp-like, ribosomal-processing cysteine protease Prp and similar proteins	NA|103aa|up_4|NZ_CP039849.1_1285112_1285421_-	PRK05573, rplU, 50S ribosomal protein L21; Validated	csn2|224aa|up_3|NZ_CP039849.1_1286577_1287249_-	cd09758, Csn2, CRISPR/Cas system-associated protein Csn2	cas2|111aa|up_2|NZ_CP039849.1_1287245_1287578_-	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	cas1|292aa|up_1|NZ_CP039849.1_1287567_1288443_-	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1	cas9|1311aa|up_0|NZ_CP039849.1_1293543_1297476_-	pfam16592, Cas9_REC, REC lobe of CRISPR-associated endonuclease Cas9	NA|66aa|down_0|NZ_CP039849.1_1299860_1300058_+	NA	NA|65aa|down_1|NZ_CP039849.1_1300668_1300863_-	NA	NA|160aa|down_2|NZ_CP039849.1_1300927_1301407_-	NA	NA|170aa|down_3|NZ_CP039849.1_1301576_1302086_-	NA	NA|112aa|down_4|NZ_CP039849.1_1302257_1302593_-	pfam02452, PemK_toxin, PemK-like, MazF-like toxin of type II toxin-antitoxin system	NA|91aa|down_5|NZ_CP039849.1_1302592_1302865_-	smart00966, SpoVT_AbrB, SpoVT / AbrB like domain	NA|156aa|down_6|NZ_CP039849.1_1302993_1303461_-	cd01043, DPS, DPS protein, ferritin-like diiron-binding domain	NA|357aa|down_7|NZ_CP039849.1_1303776_1304847_-	pfam07669, Eco57I, Eco57I restriction-modification methylase	NA|1083aa|down_8|NZ_CP039849.1_1304809_1308058_-	pfam04851, ResIII, Type III restriction enzyme, res subunit	NA|302aa|down_9|NZ_CP039849.1_1308050_1308956_-	NA
GCF_005311005.1_ASM531100v1	NZ_CP039849	Lactobacillus animalis strain LL1 chromosome, complete genome	5	1298649-1299410	5,4,4	CRISPRCasFinder,CRT,PILER-CR	no	csn2,cas2,cas1,cas9	csa3,WYL,cas3,DEDDh,DinG,csn2,cas2,cas1,cas9	Type II-C,Type II-A,Type II-B	GTTTTAGAGCTATGTTGTTTTGTATGACTCCAAAAC,GTTTTAGAGCTATGTTGTTTTGTATGACTCCAAAAC,GTTTTGGAGTCATACAAAACAACATAGCTCTAAAAC	36,36,36	0	0	NA	NA	II-A,II-B:II-A,II-B:II-A,II-B	11,11,9	11	TypeII-C,TypeII-A,TypeII-B	csa3,WYL,cas3,DEDDh,DinG,csn2,cas2,cas1,cas9	NA,NA|66aa|down_0|NZ_CP039849.1_1299860_1300058_+,NA|65aa|down_1|NZ_CP039849.1_1300668_1300863_-,NA|160aa|down_2|NZ_CP039849.1_1300927_1301407_-,NA|170aa|down_3|NZ_CP039849.1_1301576_1302086_-,NA|302aa|down_9|NZ_CP039849.1_1308050_1308956_-	NA|188aa|up_9|NZ_CP039849.1_1281886_1282450_-	PRK00083, frr, ribosome recycling factor; Reviewed	NA|241aa|up_8|NZ_CP039849.1_1282458_1283181_-	cd04254, AAK_UMPK-PyrH-Ec, UMP kinase (UMPK)-Ec, the microbial/chloroplast uridine monophosphate kinase (uridylate kinase) enzyme that catalyzes UMP phosphorylation and plays a key role in pyrimidine nucleotide biosynthesis; regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway)	NA|293aa|up_7|NZ_CP039849.1_1283394_1284273_+	cd02696, MurNAc-LAA, N-acetylmuramoyl-L-alanine amidase or MurNAc-LAA (also known as peptidoglycan aminohydrolase, NAMLA amidase, NAMLAA, Amidase 3, and peptidoglycan amidase; EC 3	NA|94aa|up_6|NZ_CP039849.1_1284460_1284742_-	PRK05435, rpmA, 50S ribosomal protein L27; Validated	NA|109aa|up_5|NZ_CP039849.1_1284764_1285091_-	cd16332, Prp-like, ribosomal-processing cysteine protease Prp and similar proteins	NA|103aa|up_4|NZ_CP039849.1_1285112_1285421_-	PRK05573, rplU, 50S ribosomal protein L21; Validated	csn2|224aa|up_3|NZ_CP039849.1_1286577_1287249_-	cd09758, Csn2, CRISPR/Cas system-associated protein Csn2	cas2|111aa|up_2|NZ_CP039849.1_1287245_1287578_-	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	cas1|292aa|up_1|NZ_CP039849.1_1287567_1288443_-	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1	cas9|1311aa|up_0|NZ_CP039849.1_1293543_1297476_-	pfam16592, Cas9_REC, REC lobe of CRISPR-associated endonuclease Cas9	NA|66aa|down_0|NZ_CP039849.1_1299860_1300058_+	NA	NA|65aa|down_1|NZ_CP039849.1_1300668_1300863_-	NA	NA|160aa|down_2|NZ_CP039849.1_1300927_1301407_-	NA	NA|170aa|down_3|NZ_CP039849.1_1301576_1302086_-	NA	NA|112aa|down_4|NZ_CP039849.1_1302257_1302593_-	pfam02452, PemK_toxin, PemK-like, MazF-like toxin of type II toxin-antitoxin system	NA|91aa|down_5|NZ_CP039849.1_1302592_1302865_-	smart00966, SpoVT_AbrB, SpoVT / AbrB like domain	NA|156aa|down_6|NZ_CP039849.1_1302993_1303461_-	cd01043, DPS, DPS protein, ferritin-like diiron-binding domain	NA|357aa|down_7|NZ_CP039849.1_1303776_1304847_-	pfam07669, Eco57I, Eco57I restriction-modification methylase	NA|1083aa|down_8|NZ_CP039849.1_1304809_1308058_-	pfam04851, ResIII, Type III restriction enzyme, res subunit	NA|302aa|down_9|NZ_CP039849.1_1308050_1308956_-	NA
