The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 3
NZ_CP046052	Methylocystis heyeri strain H2 chromosome, complete genome	4551947	3086816	3121153	4551947	tail,transposase,head,integrase	Rhodobacter_phage(33.33%)	49	3080723:3080738	3123401:3123416
3080723:3080738	attL	CTCCAGCGCGGCGCCG	NA	NA	NA	NA
WP_136497590.1|3086816_3088907_+|integrase,transposase	DDE-type integrase/transposase/recombinase	integrase,transposase	M4T586	Rhodobacter_phage	42.3	2.2e-140
WP_136497591.1|3088978_3089782_+	ATP-binding protein	NA	A0A1B0T6M6	Pelagibaca_phage	35.7	9.3e-31
WP_136497592.1|3089778_3090402_+	hypothetical protein	NA	NA	NA	NA	NA
WP_162009772.1|3090398_3090821_+	transcriptional regulator	NA	A0A1B0T6G8	Thiobacimonas_phage	39.8	2.5e-11
WP_136497594.1|3090813_3091413_+	hypothetical protein	NA	NA	NA	NA	NA
WP_136497595.1|3091396_3092194_+	hypothetical protein	NA	NA	NA	NA	NA
WP_136497639.1|3092196_3092835_+	DUF3164 family protein	NA	M4STB6	Rhodobacter_phage	62.7	2.5e-71
WP_136497596.1|3092831_3093017_+	hypothetical protein	NA	NA	NA	NA	NA
WP_136497597.1|3093013_3093814_+	regulatory protein GemA	NA	M4STB3	Rhodobacter_phage	50.0	1.5e-25
WP_162009773.1|3093826_3094081_+	hypothetical protein	NA	NA	NA	NA	NA
WP_162009774.1|3094077_3094584_+	phosphatidylserine synthase	NA	NA	NA	NA	NA
WP_136497598.1|3094632_3094812_+	hypothetical protein	NA	NA	NA	NA	NA
WP_136497599.1|3094808_3095027_+	hypothetical protein	NA	NA	NA	NA	NA
WP_136497600.1|3095023_3095419_+	helix-turn-helix domain-containing protein	NA	A0A219VHE2	Ochrobactrum_phage	46.4	1.1e-19
WP_136497641.1|3095736_3096024_+	septal ring lytic transglycosylase RlpA family protein	NA	I3ULW5	Synechococcus_phage	59.1	1.2e-20
WP_136497601.1|3096027_3096567_+	M15 family metallopeptidase	NA	NA	NA	NA	NA
WP_136497602.1|3096711_3096942_+	hypothetical protein	NA	NA	NA	NA	NA
WP_136497603.1|3096938_3097157_+	hypothetical protein	NA	NA	NA	NA	NA
WP_136497604.1|3097143_3097326_+	hypothetical protein	NA	NA	NA	NA	NA
WP_136497605.1|3097452_3097845_+	DUF2730 family protein	NA	NA	NA	NA	NA
WP_136497606.1|3097841_3098141_+	hypothetical protein	NA	M4SPS4	Rhodobacter_phage	47.9	3.7e-17
WP_136497607.1|3098145_3098712_+	DUF3486 family protein	NA	M4SNU5	Rhodobacter_phage	38.1	1.9e-22
WP_136497608.1|3098708_3099302_+	hypothetical protein	NA	M4SPS7	Rhodobacter_phage	45.6	8.9e-39
WP_136497609.1|3099298_3100909_+	hypothetical protein	NA	A4JWJ4	Burkholderia_virus	48.6	1.4e-118
WP_136497642.1|3100944_3102579_+	DUF935 domain-containing protein	NA	A0A219VH73	Ochrobactrum_phage	42.6	7.2e-115
WP_136497610.1|3102571_3103732_+	hypothetical protein	NA	A0A219VH74	Ochrobactrum_phage	39.6	1.6e-79
WP_136497611.1|3103862_3105584_-	hypothetical protein	NA	NA	NA	NA	NA
WP_136497612.1|3105811_3106603_-	hypothetical protein	NA	NA	NA	NA	NA
WP_136497613.1|3106718_3107711_+	hypothetical protein	NA	A0A2H4J9A2	uncultured_Caudovirales_phage	41.8	5.5e-57
WP_136497614.1|3107733_3108156_+	hypothetical protein	NA	M4ST95	Rhodobacter_phage	39.3	1.3e-07
WP_136497615.1|3108173_3109130_+|head	head protein	head	A0A0A1IWZ9	Pseudomonas_phage	46.1	4.7e-74
WP_136497616.1|3109141_3109375_+	hypothetical protein	NA	NA	NA	NA	NA
WP_136497617.1|3109710_3110148_+	DUF1320 domain-containing protein	NA	NA	NA	NA	NA
WP_136497618.1|3110147_3110636_+	phage morphogenesis protein	NA	A0A219VH84	Ochrobactrum_phage	44.4	4.0e-29
WP_136497619.1|3110632_3111250_+	hypothetical protein	NA	NA	NA	NA	NA
WP_136497620.1|3111246_3111813_+	hypothetical protein	NA	NA	NA	NA	NA
WP_136497621.1|3111824_3112109_+	hypothetical protein	NA	NA	NA	NA	NA
WP_136497622.1|3112112_3112493_+	hypothetical protein	NA	K4I3Z7	Acidithiobacillus_phage	35.4	5.2e-08
WP_136497623.1|3112489_3113437_+	hypothetical protein	NA	A0A088FQL4	Escherichia_phage	35.1	1.2e-24
WP_162009775.1|3113433_3114087_+|tail	phage tail protein I	tail	NA	NA	NA	NA
WP_136497625.1|3114083_3115676_+	hypothetical protein	NA	NA	NA	NA	NA
WP_136497626.1|3115681_3116221_+	hypothetical protein	NA	NA	NA	NA	NA
WP_136497627.1|3116217_3116595_+	hypothetical protein	NA	NA	NA	NA	NA
WP_136497628.1|3116591_3118199_+	hypothetical protein	NA	NA	NA	NA	NA
WP_136497629.1|3118200_3118392_+	hypothetical protein	NA	NA	NA	NA	NA
WP_136497630.1|3118403_3118874_+	hypothetical protein	NA	NA	NA	NA	NA
WP_136497631.1|3118975_3120235_+|tail	phage tail protein	tail	D4HTW1	Vibrio_phage	37.1	7.2e-54
WP_136497632.1|3120235_3120757_+|tail	phage major tail tube protein	tail	R4JEU1	Burkholderia_phage	33.5	6.0e-15
WP_136497633.1|3120772_3121153_+|tail	phage tail assembly protein	tail	NA	NA	NA	NA
3123401:3123416	attR	CGGCGCCGCGCTGGAG	NA	NA	NA	NA
>prophage 4
NZ_CP046052	Methylocystis heyeri strain H2 chromosome, complete genome	4551947	4241709	4300122	4551947	protease,transposase,tRNA	Burkholderia_virus(14.29%)	52	NA	NA
WP_136497156.1|4241709_4242447_-|tRNA	tRNA pseudouridine(38-40) synthase TruA	tRNA	NA	NA	NA	NA
WP_136497155.1|4242460_4243390_-|tRNA	methionyl-tRNA formyltransferase	tRNA	A4JWM2	Burkholderia_virus	33.2	6.5e-12
WP_136497154.1|4243389_4243950_-	peptide deformylase	NA	E3SLL2	Synechococcus_phage	41.9	1.5e-24
WP_136497153.1|4244199_4244757_+	LemA family protein	NA	NA	NA	NA	NA
WP_154331726.1|4244777_4245872_+|protease	M48 family metalloprotease	protease	NA	NA	NA	NA
WP_154331760.1|4245932_4246391_-	tryptophan-rich sensory protein	NA	A0A1V0S976	Catovirus	27.5	1.8e-10
WP_154331727.1|4247024_4247921_-	alpha/beta hydrolase fold domain-containing protein	NA	NA	NA	NA	NA
WP_154331728.1|4247917_4248853_-	sel1 repeat family protein	NA	NA	NA	NA	NA
WP_136497151.1|4248849_4249479_-	thiamine phosphate synthase	NA	NA	NA	NA	NA
WP_136497150.1|4249531_4250824_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_136497149.1|4251016_4251601_+	L,D-transpeptidase	NA	NA	NA	NA	NA
WP_136497148.1|4251858_4253787_+	1-deoxy-D-xylulose-5-phosphate synthase	NA	NA	NA	NA	NA
WP_136497147.1|4253981_4254302_-	hypothetical protein	NA	NA	NA	NA	NA
WP_136497146.1|4254301_4254649_-	hypothetical protein	NA	NA	NA	NA	NA
WP_136497145.1|4254775_4255003_+	hypothetical protein	NA	NA	NA	NA	NA
WP_136497144.1|4255129_4255981_-	extensin family protein	NA	NA	NA	NA	NA
WP_136497143.1|4256109_4256958_-	cell envelope integrity EipB family protein	NA	NA	NA	NA	NA
WP_136497142.1|4257178_4259026_-	potassium transporter TrkA	NA	NA	NA	NA	NA
WP_136497141.1|4259183_4259636_-	DUF2147 domain-containing protein	NA	NA	NA	NA	NA
WP_136497140.1|4259770_4260982_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_136497139.1|4261273_4262080_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_136497138.1|4262258_4263005_+	cellulose biosynthesis protein BcsS	NA	NA	NA	NA	NA
WP_136497137.1|4263122_4265420_+	UDP-forming cellulose synthase catalytic subunit	NA	NA	NA	NA	NA
WP_136497136.1|4265416_4268212_+	cellulose biosynthesis cyclic di-GMP-binding regulatory protein BcsB	NA	NA	NA	NA	NA
WP_136497521.1|4268232_4269426_+	cellulase	NA	NA	NA	NA	NA
WP_136497135.1|4269410_4271564_+	hypothetical protein	NA	NA	NA	NA	NA
WP_136497134.1|4271580_4272741_+	cellulose biosynthesis protein BcsN	NA	NA	NA	NA	NA
WP_136497133.1|4272806_4274021_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_136497132.1|4274017_4274668_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
WP_136497131.1|4274906_4275641_+	cyclic nucleotide-binding domain-containing protein	NA	NA	NA	NA	NA
WP_136497130.1|4275695_4276073_+	DUF1636 domain-containing protein	NA	NA	NA	NA	NA
WP_136497129.1|4276301_4276835_-	inorganic diphosphatase	NA	A0A2H4J8U1	uncultured_Caudovirales_phage	52.0	2.0e-45
WP_136497128.1|4276862_4277384_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_136497127.1|4277492_4278365_-	undecaprenyl-diphosphatase UppP	NA	NA	NA	NA	NA
WP_136497126.1|4278601_4278985_+	hypothetical protein	NA	NA	NA	NA	NA
WP_136497125.1|4279922_4281899_-	protein meaA	NA	NA	NA	NA	NA
WP_136497124.1|4282944_4283412_-	hypothetical protein	NA	NA	NA	NA	NA
WP_136495213.1|4283408_4284166_-|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
WP_136497123.1|4284192_4284765_-	hypothetical protein	NA	NA	NA	NA	NA
WP_154331729.1|4284929_4286291_-	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_136495748.1|4286633_4287435_+|transposase	IS5 family transposase	transposase	A0A0N9SHJ4	Paenibacillus_phage	43.5	5.4e-23
WP_136494305.1|4288300_4289323_+	radical SAM protein	NA	NA	NA	NA	NA
WP_162009804.1|4289828_4290200_+	GtrA family protein	NA	NA	NA	NA	NA
WP_136494307.1|4290556_4291684_+|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
WP_154331730.1|4291680_4292610_+|protease	protease modulator HflC	protease	NA	NA	NA	NA
WP_154331731.1|4292692_4294174_+	Do family serine endopeptidase	NA	A0A1B1IT49	uncultured_Mediterranean_phage	28.0	2.2e-22
WP_136494309.1|4294532_4295444_-	phosphoserine phosphatase SerB	NA	NA	NA	NA	NA
WP_136494310.1|4295472_4296537_+|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_154331732.1|4296626_4297136_-	hypothetical protein	NA	NA	NA	NA	NA
WP_162009805.1|4297104_4297473_-	hypothetical protein	NA	NA	NA	NA	NA
WP_136494313.1|4298848_4298941_+	hypothetical protein	NA	NA	NA	NA	NA
WP_136495120.1|4298968_4300122_-|transposase	IS3 family transposase	transposase	U5P429	Shigella_phage	47.1	3.1e-64
>prophage 1
NZ_CP046053	Methylocystis heyeri strain H2 plasmid unnamed1, complete sequence	145219	0	4501	145219		Ochrobactrum_phage(33.33%)	3	NA	NA
WP_136498167.1|963_1986_+	plasmid partitioning protein RepB	NA	A0A240F4U0	Ochrobactrum_phage	35.3	5.5e-44
WP_136498166.1|2211_3546_+	replication initiation protein RepC	NA	L7TKN6	Rhizobium_phage	26.7	1.5e-17
WP_136498165.1|3589_4501_-	recombinase family protein	NA	A0A0C4UR34	Shigella_phage	55.4	3.2e-35
>prophage 2
NZ_CP046053	Methylocystis heyeri strain H2 plasmid unnamed1, complete sequence	145219	7547	8504	145219		Synechococcus_phage(100.0%)	1	NA	NA
WP_136498162.1|7547_8504_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	A0A0E3ETU3	Synechococcus_phage	39.1	1.3e-07
>prophage 3
NZ_CP046053	Methylocystis heyeri strain H2 plasmid unnamed1, complete sequence	145219	22918	24163	145219		Klosneuvirus(100.0%)	1	NA	NA
WP_154331767.1|22918_24163_-	ornithine--oxo-acid transaminase	NA	A0A1V0SKB7	Klosneuvirus	26.0	1.1e-25
>prophage 4
NZ_CP046053	Methylocystis heyeri strain H2 plasmid unnamed1, complete sequence	145219	27364	28360	145219		Micromonas_sp._RCC1109_virus(100.0%)	1	NA	NA
WP_136498102.1|27364_28360_+	NAD-dependent epimerase/dehydratase family protein	NA	E5EQ78	Micromonas_sp._RCC1109_virus	27.6	2.2e-05
>prophage 5
NZ_CP046053	Methylocystis heyeri strain H2 plasmid unnamed1, complete sequence	145219	32510	33491	145219		Tupanvirus(100.0%)	1	NA	NA
WP_136498105.1|32510_33491_+	NAD(P)-dependent alcohol dehydrogenase	NA	A0A2K9L7I1	Tupanvirus	24.2	1.0e-07
>prophage 6
NZ_CP046053	Methylocystis heyeri strain H2 plasmid unnamed1, complete sequence	145219	45853	48015	145219		uncultured_Mediterranean_phage(50.0%)	2	NA	NA
WP_136498113.1|45853_47059_+	NAD-dependent formate dehydrogenase	NA	A0A1B1IVB5	uncultured_Mediterranean_phage	26.8	6.9e-22
WP_136498114.1|47196_48015_+	hypothetical protein	NA	W6LP63	Streptococcus_phage	54.4	8.8e-45
>prophage 7
NZ_CP046053	Methylocystis heyeri strain H2 plasmid unnamed1, complete sequence	145219	54067	102886	145219	transposase,integrase	Bacillus_phage(21.43%)	37	78682:78697	87658:87673
WP_136498149.1|54067_55402_-	two-component sensor histidine kinase	NA	W8CYF6	Bacillus_phage	26.2	2.6e-17
WP_136498117.1|55395_56055_-	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	33.8	3.3e-26
WP_136498118.1|56300_56549_+	type II toxin-antitoxin system prevent-host-death family antitoxin	NA	NA	NA	NA	NA
WP_162009818.1|56545_56965_+	type II toxin-antitoxin system VapC family toxin	NA	NA	NA	NA	NA
WP_136498120.1|56961_58095_+|integrase	tyrosine-type recombinase/integrase	integrase	NA	NA	NA	NA
WP_136498121.1|58908_59118_+	hypothetical protein	NA	NA	NA	NA	NA
WP_136498122.1|59149_62287_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_136498123.1|62283_62874_+	DUF3780 domain-containing protein	NA	A0A1P8DTE9	Proteus_phage	49.4	2.2e-37
WP_154331773.1|62885_65864_+	DUF1156 domain-containing protein	NA	Q684G2	Sulfolobus_virus	24.2	1.1e-07
WP_136498124.1|65868_68637_+	DEAD/DEAH box helicase	NA	A0A2H4J643	uncultured_Caudovirales_phage	22.6	8.7e-20
WP_136498125.1|68665_69262_+	DUF262 domain-containing protein	NA	NA	NA	NA	NA
WP_136498126.1|69228_70503_+	DUF262 domain-containing protein	NA	NA	NA	NA	NA
WP_136498127.1|70553_72068_-	hypothetical protein	NA	NA	NA	NA	NA
WP_162009819.1|72030_73086_-	nucleoid-associated protein	NA	NA	NA	NA	NA
WP_136498129.1|73604_74567_+	DUF1738 domain-containing protein	NA	A0A1V0EEV1	Caulobacter_phage	39.2	1.3e-55
WP_136498130.1|74720_76814_+	ParB/RepB/Spo0J family partition protein	NA	G8DH78	Emiliania_huxleyi_virus	35.2	4.7e-34
WP_136498131.1|76922_77681_+	hypothetical protein	NA	NA	NA	NA	NA
WP_136498132.1|77782_78382_+	hypothetical protein	NA	NA	NA	NA	NA
78682:78697	attL	CAGCGCATCGACGCCG	NA	NA	NA	NA
WP_136498150.1|81275_82835_+|integrase	tyrosine-type recombinase/integrase	integrase	A0A1L4BKH1	Thermus_phage	30.8	1.1e-06
WP_136498133.1|82828_83743_+|integrase	tyrosine-type recombinase/integrase	integrase	D2XR58	Bacillus_phage	31.3	4.0e-06
WP_136498134.1|83739_84744_+|integrase	site-specific integrase	integrase	A0A2K9VH72	Gordonia_phage	30.2	4.0e-15
WP_136498135.1|84822_86697_+	methylase	NA	NA	NA	NA	NA
WP_136498136.1|86698_87739_+	DNA primase	NA	A0A0H5AWB1	Pseudomonas_phage	32.6	4.9e-08
87658:87673	attR	CGGCGTCGATGCGCTG	NA	NA	NA	NA
WP_136498137.1|88074_89013_+	DUF2493 domain-containing protein	NA	A0A291L9X7	Bordetella_phage	42.7	3.9e-20
WP_136498138.1|89665_89857_+	hypothetical protein	NA	NA	NA	NA	NA
WP_136498139.1|90418_90745_+	DUF736 domain-containing protein	NA	NA	NA	NA	NA
WP_136498140.1|90996_93012_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_136498141.1|93008_94736_+	ATP-dependent helicase	NA	A0A1V0SIN4	Klosneuvirus	32.5	1.0e-05
WP_136498142.1|95184_95694_+	hypothetical protein	NA	NA	NA	NA	NA
WP_136498143.1|96147_96627_+	hypothetical protein	NA	NA	NA	NA	NA
WP_136498144.1|96638_97205_-	hypothetical protein	NA	NA	NA	NA	NA
WP_136498145.1|97322_98696_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_154331765.1|98878_100231_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_136498208.1|100493_100871_-	hypothetical protein	NA	NA	NA	NA	NA
WP_136498207.1|101102_101438_+	hypothetical protein	NA	NA	NA	NA	NA
WP_136498206.1|101716_101929_-	hypothetical protein	NA	NA	NA	NA	NA
WP_136498216.1|102310_102886_-	PIN domain-containing protein	NA	K4HZX4	Acidithiobacillus_phage	44.8	8.9e-36
>prophage 8
NZ_CP046053	Methylocystis heyeri strain H2 plasmid unnamed1, complete sequence	145219	116152	117037	145219		Leptospira_phage(100.0%)	1	NA	NA
WP_136498193.1|116152_117037_+	ImmA/IrrE family metallo-endopeptidase	NA	Q9G094	Leptospira_phage	36.5	1.9e-05
>prophage 9
NZ_CP046053	Methylocystis heyeri strain H2 plasmid unnamed1, complete sequence	145219	129493	130051	145219		Geobacillus_virus(100.0%)	1	NA	NA
WP_136498214.1|129493_130051_-	lytic transglycosylase domain-containing protein	NA	A0A0H3V0Q1	Geobacillus_virus	37.8	1.7e-15
>prophage 10
NZ_CP046053	Methylocystis heyeri strain H2 plasmid unnamed1, complete sequence	145219	141654	142002	145219		Psychrobacter_phage(100.0%)	1	NA	NA
WP_136498168.1|141654_142002_+	single-stranded DNA-binding protein	NA	M4SRQ0	Psychrobacter_phage	38.1	2.6e-14
>prophage 1
NZ_CP046054	Methylocystis heyeri strain H2 plasmid unnamed2, complete sequence	30622	10	7182	30622	transposase	Ochrobactrum_phage(33.33%)	6	NA	NA
WP_154331800.1|10_1198_+	plasmid partitioning protein RepA	NA	A0A240F4U1	Ochrobactrum_phage	60.4	1.8e-131
WP_154331778.1|1185_2211_+	plasmid partitioning protein RepB	NA	A0A240F4U0	Ochrobactrum_phage	42.4	6.0e-51
WP_154331779.1|2455_3790_+	replication initiation protein RepC	NA	L7TKN6	Rhizobium_phage	26.9	3.0e-18
WP_154331780.1|3835_4768_-	recombinase family protein	NA	A0A0C4UR34	Shigella_phage	54.7	4.2e-35
WP_154331781.1|5425_6292_-	recombinase family protein	NA	E5FFF9	Burkholderia_phage	40.4	2.5e-26
WP_136495748.1|6380_7182_+|transposase	IS5 family transposase	transposase	A0A0N9SHJ4	Paenibacillus_phage	43.5	5.4e-23
