assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_004405205.2_ASM440520v2	NZ_CP042336	Escherichia coli strain GZ04-0086 chromosome, complete genome	1	2007420-2008121	1,1,1	PILER-CR,CRISPRCasFinder,CRT	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3	cas3,c2c9_V-U4,DEDDh,DinG,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,RT	Type I-E	CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC	29,29,29	0	0	NA	NA	I-E:I-E:I-E	11,11,11	11	TypeI-E	cas3,c2c9_V-U4,DEDDh,DinG,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,RT	NA,NA	NA|254aa|up_9|NZ_CP042336.1_1999232_1999994_-	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional	NA|350aa|up_8|NZ_CP042336.1_1999974_2001024_-	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|160aa|up_7|NZ_CP042336.1_2001020_2001500_-	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|237aa|up_6|NZ_CP042336.1_2001499_2002210_-	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|104aa|up_5|NZ_CP042336.1_2002228_2002540_-	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|108aa|up_4|NZ_CP042336.1_2002733_2003057_-	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|202aa|up_3|NZ_CP042336.1_2003106_2003712_-	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|476aa|up_2|NZ_CP042336.1_2003711_2005139_-	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|303aa|up_1|NZ_CP042336.1_2005140_2006049_-	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|346aa|up_0|NZ_CP042336.1_2006300_2007338_+	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	cas2|98aa|down_0|NZ_CP042336.1_2008217_2008511_-	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	cas1|307aa|down_1|NZ_CP042336.1_2008510_2009431_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas6e|217aa|down_2|NZ_CP042336.1_2009427_2010078_-	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas5|249aa|down_3|NZ_CP042336.1_2010059_2010806_-	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas7|352aa|down_4|NZ_CP042336.1_2010816_2011872_-	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cse2gr11|179aa|down_5|NZ_CP042336.1_2011883_2012420_-	TIGR02548, CRISPR_system_Cascade_subunit_CasB, CRISPR type I-E/ECOLI-associated protein CasB/Cse2	cas8e|521aa|down_6|NZ_CP042336.1_2012416_2013979_-	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cas3|900aa|down_7|NZ_CP042336.1_2014076_2016776_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	NA|51aa|down_8|NZ_CP042336.1_2016970_2017123_-	pfam01848, HOK_GEF, Hok/gef family	NA|245aa|down_9|NZ_CP042336.1_2017387_2018122_-	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase
GCF_004405205.2_ASM440520v2	NZ_CP042336	Escherichia coli strain GZ04-0086 chromosome, complete genome	2	2023621-2024198	2,2,2	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3	cas3,c2c9_V-U4,DEDDh,DinG,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,RT	Type I-E	CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC	29,29,29	0	0	NA	NA	I-E:I-E:I-E	9,9,9	9	TypeI-E	cas3,c2c9_V-U4,DEDDh,DinG,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,RT	NA,NA|121aa|down_3|NZ_CP042336.1_2026938_2027301_+	cas7|352aa|up_9|NZ_CP042336.1_2010816_2011872_-	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cse2gr11|179aa|up_8|NZ_CP042336.1_2011883_2012420_-	TIGR02548, CRISPR_system_Cascade_subunit_CasB, CRISPR type I-E/ECOLI-associated protein CasB/Cse2	cas8e|521aa|up_7|NZ_CP042336.1_2012416_2013979_-	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cas3|900aa|up_6|NZ_CP042336.1_2014076_2016776_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	NA|51aa|up_5|NZ_CP042336.1_2016970_2017123_-	pfam01848, HOK_GEF, Hok/gef family	NA|245aa|up_4|NZ_CP042336.1_2017387_2018122_-	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|571aa|up_3|NZ_CP042336.1_2018195_2019908_-	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|600aa|up_2|NZ_CP042336.1_2019907_2021707_-	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|121aa|up_1|NZ_CP042336.1_2022025_2022388_+	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|185aa|up_0|NZ_CP042336.1_2022427_2022982_+	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|224aa|down_0|NZ_CP042336.1_2024537_2025209_-	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|201aa|down_1|NZ_CP042336.1_2025381_2025984_+	COG1704, LemA, Uncharacterized conserved protein [Function unknown]	NA|302aa|down_2|NZ_CP042336.1_2025997_2026903_+	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|121aa|down_3|NZ_CP042336.1_2026938_2027301_+	NA	NA|433aa|down_4|NZ_CP042336.1_2027356_2028655_-	PRK00077, eno, enolase; Provisional	NA|546aa|down_5|NZ_CP042336.1_2028742_2030380_-	PRK05380, pyrG, CTP synthetase; Validated	NA|264aa|down_6|NZ_CP042336.1_2030607_2031399_-	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|112aa|down_7|NZ_CP042336.1_2031469_2031805_-	PRK09907, PRK09907, endoribonuclease MazF	NA|83aa|down_8|NZ_CP042336.1_2031804_2032053_-	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE	NA|745aa|down_9|NZ_CP042336.1_2032130_2034365_-	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional
GCF_004405205.2_ASM440520v2	NZ_CP042336	Escherichia coli strain GZ04-0086 chromosome, complete genome	3	3656600-3656747	3	CRISPRCasFinder	no		cas3,c2c9_V-U4,DEDDh,DinG,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,RT	Orphan	CGTCTTATCAGGCCTACGAGTTCGGTGCTGTGTAGGTCGGATAAGGCGTTCA	52	0	0	NA	NA	NA	1	1	Orphan	cas3,c2c9_V-U4,DEDDh,DinG,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,RT	NA|532aa|up_6|NZ_CP042336.1_3647912_3649508_+,NA	NA|238aa|up_9|NZ_CP042336.1_3645815_3646529_-	PRK12742, PRK12742, SDR family oxidoreductase	NA|198aa|up_8|NZ_CP042336.1_3646599_3647193_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|151aa|up_7|NZ_CP042336.1_3647337_3647790_+	COG2731, EbgC, Beta-galactosidase, beta subunit [Carbohydrate transport and metabolism]	NA|532aa|up_6|NZ_CP042336.1_3647912_3649508_+	NA	NA|335aa|up_5|NZ_CP042336.1_3649563_3650568_-	PRK03515, PRK03515, ornithine carbamoyltransferase subunit I; Provisional	NA|139aa|up_4|NZ_CP042336.1_3650729_3651146_+	PRK11191, PRK11191, ribonuclease E inhibitor RraB	NA|168aa|up_3|NZ_CP042336.1_3651191_3651695_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|399aa|up_2|NZ_CP042336.1_3651879_3653076_+	COG4269, COG4269, Predicted membrane protein [Function unknown]	NA|952aa|up_1|NZ_CP042336.1_3653131_3655987_-	PRK05729, valS, valyl-tRNA synthetase; Reviewed	NA|148aa|up_0|NZ_CP042336.1_3655986_3656430_-	PRK05728, PRK05728, DNA polymerase III subunit chi; Validated	NA|504aa|down_0|NZ_CP042336.1_3656783_3658295_-	PRK00913, PRK00913, multifunctional aminopeptidase A; Provisional	NA|367aa|down_1|NZ_CP042336.1_3658561_3659662_+	PRK15120, PRK15120, lipopolysaccharide ABC transporter permease LptF; Provisional	NA|361aa|down_2|NZ_CP042336.1_3659661_3660744_+	PRK15071, PRK15071, lipopolysaccharide ABC transporter permease; Provisional	NA|340aa|down_3|NZ_CP042336.1_3662536_3663556_-	cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD)	NA|422aa|down_4|NZ_CP042336.1_3663999_3665265_+	PRK09692, PRK09692, integrase; Provisional	NA|384aa|down_5|NZ_CP042336.1_3669477_3670629_+	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]	NA|260aa|down_6|NZ_CP042336.1_3671819_3672599_-	PRK09183, PRK09183, transposase/IS protein; Provisional	NA|341aa|down_7|NZ_CP042336.1_3672598_3673621_-	COG4584, COG4584, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|638aa|down_8|NZ_CP042336.1_3674654_3676568_-	COG3829, RocR, Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]	NA|399aa|down_9|NZ_CP042336.1_3676804_3678001_+	pfam02515, CoA_transf_3, CoA-transferase family III
GCF_004405205.2_ASM440520v2	NZ_CP042336	Escherichia coli strain GZ04-0086 chromosome, complete genome	4	4273694-4273838	4	CRISPRCasFinder	no		cas3,c2c9_V-U4,DEDDh,DinG,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,RT	Orphan	ATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAAA	43	0	0	NA	NA	NA	1	1	Orphan	cas3,c2c9_V-U4,DEDDh,DinG,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,RT	NA|28aa|up_2|NZ_CP042336.1_4271564_4271648_+,NA	NA|372aa|up_9|NZ_CP042336.1_4266320_4267436_+	PRK10245, adrA, diguanylate cyclase AdrA; Provisional	NA|270aa|up_8|NZ_CP042336.1_4267452_4268262_-	PRK11880, PRK11880, pyrroline-5-carboxylate reductase; Reviewed	NA|153aa|up_7|NZ_CP042336.1_4268381_4268840_+	PRK00124, PRK00124, YaiI/YqxD family protein	NA|175aa|up_6|NZ_CP042336.1_4269022_4269547_+	PRK03731, aroL, shikimate kinase AroL	NA|64aa|up_5|NZ_CP042336.1_4269596_4269788_+	PRK10380, PRK10380, hypothetical protein; Provisional	NA|226aa|up_4|NZ_CP042336.1_4270045_4270723_+	PRK10481, PRK10481, hypothetical protein; Provisional	NA|95aa|up_3|NZ_CP042336.1_4270794_4271079_+	PRK10579, PRK10579, pyrimidine/purine nucleoside phosphorylase	NA|28aa|up_2|NZ_CP042336.1_4271564_4271648_+	NA	NA|304aa|up_1|NZ_CP042336.1_4271725_4272637_-	COG2974, RdgC, DNA recombination-dependent growth factor C [DNA replication, recombination, and repair]	NA|303aa|up_0|NZ_CP042336.1_4272761_4273670_+	PRK09557, PRK09557, fructokinase; Reviewed	NA|395aa|down_0|NZ_CP042336.1_4273914_4275099_-	PRK10091, PRK10091, MFS transport protein AraJ; Provisional	NA|1049aa|down_1|NZ_CP042336.1_4275224_4278371_-	PRK10246, PRK10246, exonuclease subunit SbcC; Provisional	NA|401aa|down_2|NZ_CP042336.1_4278367_4279570_-	PRK10966, PRK10966, exonuclease subunit SbcD; Provisional	NA|230aa|down_3|NZ_CP042336.1_4279759_4280449_+	PRK10161, PRK10161, phosphate response regulator transcription factor PhoB	NA|432aa|down_4|NZ_CP042336.1_4280506_4281802_+	PRK11006, phoR, phosphate regulon sensor histidine kinase PhoR	NA|440aa|down_5|NZ_CP042336.1_4282208_4283528_+	PRK15433, PRK15433, branched-chain amino acid transporter carrier protein BrnQ	NA|458aa|down_6|NZ_CP042336.1_4283603_4284977_+	PRK10580, proY, putative proline-specific permease; Provisional	NA|606aa|down_7|NZ_CP042336.1_4285132_4286950_+	PRK10785, PRK10785, maltodextrin glucosidase; Provisional	NA|194aa|down_8|NZ_CP042336.1_4286954_4287536_-	PRK10045, PRK10045, ACP phosphodiesterase	NA|357aa|down_9|NZ_CP042336.1_4287628_4288699_+	PRK00147, queA, S-adenosylmethionine:tRNA ribosyltransferase-isomerase; Provisional
GCF_004405205.2_ASM440520v2	NZ_CP042336	Escherichia coli strain GZ04-0086 chromosome, complete genome	5	4413917-4414013	5	CRISPRCasFinder	no		cas3,c2c9_V-U4,DEDDh,DinG,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,RT	Orphan	GCTTGACGCGTCTTATCAGGCCTACAA	27	0	0	NA	NA	NA	1	1	Orphan	cas3,c2c9_V-U4,DEDDh,DinG,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,RT	NA,NA	NA|485aa|up_9|NZ_CP042336.1_4400149_4401604_+	PRK11375, PRK11375, putative allantoin permease	NA|454aa|up_8|NZ_CP042336.1_4401663_4403025_+	PRK08044, PRK08044, allantoinase AllB	NA|434aa|up_7|NZ_CP042336.1_4403081_4404383_+	PRK11412, PRK11412, uracil/xanthine transporter	NA|382aa|up_6|NZ_CP042336.1_4404404_4405550_+	PRK09932, PRK09932, glycerate 3-kinase	NA|262aa|up_5|NZ_CP042336.1_4405777_4406563_-	TIGR03214, ura-cupin, putative allantoin catabolism protein	NA|412aa|up_4|NZ_CP042336.1_4406573_4407809_-	TIGR03176, AllC, allantoate amidohydrolase	NA|350aa|up_3|NZ_CP042336.1_4407830_4408880_-	PRK15025, PRK15025, ureidoglycolate dehydrogenase; Provisional	NA|420aa|up_2|NZ_CP042336.1_4410907_4412167_+	pfam06545, DUF1116, Protein of unknown function (DUF1116)	NA|272aa|up_1|NZ_CP042336.1_4412177_4412993_+	pfam11392, DUF2877, Protein of unknown function (DUF2877)	NA|298aa|up_0|NZ_CP042336.1_4412989_4413883_+	PRK09411, PRK09411, carbamate kinase; Reviewed	NA|356aa|down_0|NZ_CP042336.1_4414077_4415145_-	PRK06019, PRK06019, phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed	NA|170aa|down_1|NZ_CP042336.1_4415141_4415651_-	COG0041, PurE, Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]	NA|241aa|down_2|NZ_CP042336.1_4415768_4416491_-	PRK05340, PRK05340, UDP-2,3-diacylglucosamine hydrolase; Provisional	NA|165aa|down_3|NZ_CP042336.1_4416493_4416988_-	PRK10791, PRK10791, peptidylprolyl isomerase B	NA|462aa|down_4|NZ_CP042336.1_4417161_4418547_+	PRK00260, cysS, cysteinyl-tRNA synthetase; Validated	NA|174aa|down_5|NZ_CP042336.1_4418582_4419104_-	COG1988, COG1988, Predicted membrane-bound metal-dependent hydrolases [General function prediction only]	NA|71aa|down_6|NZ_CP042336.1_4419211_4419424_-	PRK11507, PRK11507, ribosome-associated protein YbcJ	NA|289aa|down_7|NZ_CP042336.1_4419425_4420292_-	PRK10792, PRK10792, bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA|172aa|down_8|NZ_CP042336.1_4421705_4422221_+	PRK09934, PRK09934, fimbriae assembly protein	NA|211aa|down_9|NZ_CP042336.1_4422223_4422856_-	PRK09935, PRK09935, fimbriae biosynthesis transcriptional regulator FimZ
