assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_004142705.1_ASM414270v2	NZ_CP041213	Listeria monocytogenes strain LMP18-H8393 chromosome, complete genome	1	209525-209679	1	CRISPRCasFinder	no	cas3	csa3,DinG,cas3,WYL,casR,RT,cas6,cas8b2,cas7,cas5,cas2,DEDDh,csn2,cas1,cas9	Unclear	TTTCCACCACCACCTACGGATGAAGAGTTAAGACTTGCTTTGCCAGAGAC	50	0	0	NA	NA	NA	1	1	Unclear	csa3,DinG,cas3,WYL,casR,RT,cas6,cas8b2,cas7,cas5,cas2,DEDDh,csn2,cas1,cas9	NA,NA	NA|231aa|up_9|NZ_CP041213.1_196767_197460_+	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein	NA|403aa|up_8|NZ_CP041213.1_197456_198665_+	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB	NA|103aa|up_7|NZ_CP041213.1_199348_199657_+	PRK13259, PRK13259, septation regulator SpoVG	NA|103aa|up_6|NZ_CP041213.1_199775_200084_+	PRK13259, PRK13259, septation regulator SpoVG	NA|458aa|up_5|NZ_CP041213.1_200470_201844_+	PRK14354, glmU, bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU	NA|319aa|up_4|NZ_CP041213.1_201894_202851_+	PRK01259, PRK01259, ribose-phosphate diphosphokinase	NA|238aa|up_3|NZ_CP041213.1_202894_203608_-	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]	NA|318aa|up_2|NZ_CP041213.1_203880_204834_-	cd00137, PI-PLCc, Catalytic domain of prokaryotic and eukaryotic phosphoinositide-specific phospholipase C	NA|530aa|up_1|NZ_CP041213.1_205076_206666_+	pfam01289, Thiol_cytolysin, Thiol-activated cytolysin	NA|511aa|up_0|NZ_CP041213.1_207000_208533_+	COG3227, LasB, Zinc metalloprotease (elastase) [Amino acid transport and metabolism]	NA|290aa|down_0|NZ_CP041213.1_210687_211557_+	smart00770, Zn_dep_PLPC, Zinc dependent phospholipase C (alpha toxin)	NA|108aa|down_1|NZ_CP041213.1_211628_211952_+	pfam17606, DUF5502, Family of unknown function (DUF5502)	NA|154aa|down_2|NZ_CP041213.1_212084_212546_+	COG4808, COG4808, Uncharacterized protein conserved in bacteria [Function unknown]	NA|111aa|down_3|NZ_CP041213.1_212598_212931_-	PRK01119, PRK01119, putative heavy metal-binding protein	NA|244aa|down_4|NZ_CP041213.1_212997_213729_-	pfam08713, DNA_alkylation, DNA alkylation repair enzyme	NA|314aa|down_5|NZ_CP041213.1_213749_214691_-	PRK00066, ldh, L-lactate dehydrogenase; Reviewed	NA|208aa|down_6|NZ_CP041213.1_214984_215608_+	PRK05618, PRK05618, 50S ribosomal protein L25/general stress protein Ctc; Reviewed	NA|195aa|down_7|NZ_CP041213.1_215697_216282_+	pfam13508, Acetyltransf_7, Acetyltransferase (GNAT) domain	NA|187aa|down_8|NZ_CP041213.1_216388_216949_+	PRK05426, PRK05426, peptidyl-tRNA hydrolase; Provisional	cas3|1180aa|down_9|NZ_CP041213.1_217062_220602_+	COG1197, Mfd, Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
GCF_004142705.1_ASM414270v2	NZ_CP041213	Listeria monocytogenes strain LMP18-H8393 chromosome, complete genome	2	501830-502414	1	CRT	no	RT	csa3,DinG,cas3,WYL,casR,RT,cas6,cas8b2,cas7,cas5,cas2,DEDDh,csn2,cas1,cas9	Unclear	GATGTAAGTAATTTTGATACNAGTTCAGTAACTNATATG	39	0	0	NA	NA	NA	7	7	Orphan	csa3,DinG,cas3,WYL,casR,RT,cas6,cas8b2,cas7,cas5,cas2,DEDDh,csn2,cas1,cas9	NA,NA|158aa|down_1|NZ_CP041213.1_505199_505673_+,NA|162aa|down_2|NZ_CP041213.1_505692_506178_+,NA|89aa|down_4|NZ_CP041213.1_506586_506853_+,NA|61aa|down_6|NZ_CP041213.1_508352_508535_+	NA|252aa|up_9|NZ_CP041213.1_485577_486333_-	pfam16160, DUF4866, Domain of unknown function (DUF4866)	NA|720aa|up_8|NZ_CP041213.1_486449_488609_-	pfam01841, Transglut_core, Transglutaminase-like superfamily	NA|383aa|up_7|NZ_CP041213.1_488605_489754_-	COG1721, COG1721, Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain) [General function prediction only]	NA|316aa|up_6|NZ_CP041213.1_489758_490706_-	COG0714, COG0714, MoxR-like ATPases [General function prediction only]	NA|532aa|up_5|NZ_CP041213.1_490861_492457_+	COG2508, COG2508, Regulator of polyketide synthase expression [Signal transduction mechanisms / Secondary metabolites biosynthesis, transport, and catabolism]	NA|428aa|up_4|NZ_CP041213.1_492590_493874_+	cd11484, SLC-NCS1sbd_CobB-like, nucleobase-cation-symport-1 (NCS1) transporter CobB-like; solute-binding domain	NA|367aa|up_3|NZ_CP041213.1_493874_494975_+	COG3535, COG3535, Uncharacterized conserved protein [Function unknown]	NA|517aa|up_2|NZ_CP041213.1_494967_496518_+	COG0145, HyuA, N-methylhydantoinase A/acetone carboxylase, beta subunit [Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism]	NA|513aa|up_1|NZ_CP041213.1_497153_498692_+	pfam05043, Mga, Mga helix-turn-helix domain	NA|694aa|up_0|NZ_CP041213.1_498955_501037_+	pfam03382, DUF285, Mycoplasma protein of unknown function, DUF285	NA|586aa|down_0|NZ_CP041213.1_503376_505134_+	pfam03382, DUF285, Mycoplasma protein of unknown function, DUF285	NA|158aa|down_1|NZ_CP041213.1_505199_505673_+	NA	NA|162aa|down_2|NZ_CP041213.1_505692_506178_+	NA	NA|102aa|down_3|NZ_CP041213.1_506205_506511_+	TIGR01167, Zinc_metalloprotease_ZmpB, LPXTG-motif cell wall anchor domain	NA|89aa|down_4|NZ_CP041213.1_506586_506853_+	NA	NA|321aa|down_5|NZ_CP041213.1_506932_507895_-	COG1078, COG1078, HD superfamily phosphohydrolases [General function prediction only]	NA|61aa|down_6|NZ_CP041213.1_508352_508535_+	NA	NA|276aa|down_7|NZ_CP041213.1_508656_509484_+	pfam05708, Peptidase_C92, Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family	NA|120aa|down_8|NZ_CP041213.1_509511_509871_+	pfam11337, DUF3139, Protein of unknown function (DUF3139)	NA|187aa|down_9|NZ_CP041213.1_510196_510757_+	pfam14278, TetR_C_8, Transcriptional regulator C-terminal region
GCF_004142705.1_ASM414270v2	NZ_CP041213	Listeria monocytogenes strain LMP18-H8393 chromosome, complete genome	3	555775-557102	1,2,2,2	PILER-CR,CRISPRCasFinder,CRT,PILER-CR	no	cas6,cas8b2,cas7,cas5,cas3,cas2	csa3,DinG,cas3,WYL,casR,RT,cas6,cas8b2,cas7,cas5,cas2,DEDDh,csn2,cas1,cas9	Unclear	GTTTTAACTACTTATTATGAAATGTAAAT,GTTTTAACTACTTATTATGAAATGTAAAT,GTTTTAANNNCTACTTATTATGAAATGTAAAT,GTTTTAACTACTTATTATGAAATGTAAAT	29,29,32,29	1	2	555870-555905|555870-555905	NZ_CP041213.1_2407885-2407850|NZ_CP041213.1_2713510-2713475	I-A:I-A:I-A:I-A	17,20,20,17	20	Unclear	csa3,DinG,cas3,WYL,casR,RT,cas6,cas8b2,cas7,cas5,cas2,DEDDh,csn2,cas1,cas9	NA,NA|148aa|down_5|NZ_CP041213.1_562649_563093_+,NA|492aa|down_8|NZ_CP041213.1_565909_567385_+	NA|610aa|up_9|NZ_CP041213.1_543566_545396_+	NF033186, internalin_K, class 1 internalin InlK	NA|144aa|up_8|NZ_CP041213.1_545496_545928_+	pfam00582, Usp, Universal stress protein family	NA|477aa|up_7|NZ_CP041213.1_545974_547405_-	COG2843, PgsA, Putative enzyme of poly-gamma-glutamate biosynthesis (capsule formation) [Cell envelope biogenesis, outer membrane]	NA|272aa|up_6|NZ_CP041213.1_547525_548341_-	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]	cas6|241aa|up_5|NZ_CP041213.1_548693_549416_+	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6	cas8b2|563aa|up_4|NZ_CP041213.1_549431_551120_+	cd09754, Cas8a1_I-A, CRISPR/Cas system-associated protein Cas8a1	cas7|290aa|up_3|NZ_CP041213.1_551109_551979_+	TIGR02585, conserved_protein, CRISPR-associated protein Cas7/Cst2/DevR, subtype I-B/TNEAP	cas5|261aa|up_2|NZ_CP041213.1_551956_552739_+	TIGR01895, conserved_hypothetical_protein, CRISPR-associated protein Cas5, subtype I-B/TNEAP	cas3|730aa|up_1|NZ_CP041213.1_552806_554996_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas2|93aa|up_0|NZ_CP041213.1_555298_555577_+	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	NA|123aa|down_0|NZ_CP041213.1_557174_557543_-	COG3759, COG3759, Predicted membrane protein [Function unknown]	NA|472aa|down_1|NZ_CP041213.1_557688_559104_+	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|335aa|down_2|NZ_CP041213.1_559235_560240_+	COG1940, NagC, Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]	NA|439aa|down_3|NZ_CP041213.1_560272_561589_-	cd05296, GH4_P_beta_glucosidase, Glycoside Hydrolases Family 4; Phospho-beta-glucosidase	NA|251aa|down_4|NZ_CP041213.1_561790_562543_+	COG1737, RpiR, Transcriptional regulators [Transcription]	NA|148aa|down_5|NZ_CP041213.1_562649_563093_+	NA	NA|554aa|down_6|NZ_CP041213.1_563138_564800_-	COG0659, SUL1, Sulfate permease and related transporters (MFS superfamily) [Inorganic ion transport and metabolism]	NA|247aa|down_7|NZ_CP041213.1_564939_565680_-	cd01106, HTH_TipAL-Mta, Helix-Turn-Helix DNA binding domain of the transcription regulators TipAL, Mta, and SkgA	NA|492aa|down_8|NZ_CP041213.1_565909_567385_+	NA	NA|499aa|down_9|NZ_CP041213.1_567377_568874_+	COG5298, COG5298, Uncharacterized protein conserved in bacteria [Function unknown]
GCF_004142705.1_ASM414270v2	NZ_CP041213	Listeria monocytogenes strain LMP18-H8393 chromosome, complete genome	4	2757743-2760420	3,3,3	CRISPRCasFinder,CRT,PILER-CR	no	csn2,cas2,cas1,cas9	csa3,DinG,cas3,WYL,casR,RT,cas6,cas8b2,cas7,cas5,cas2,DEDDh,csn2,cas1,cas9	Type II-B,Type II-A,Type II-C	GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC,GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC,GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	36,36,36	4	5	2757911-2757940|2758506-2758535|2758506-2758535|2758572-2758601|2759827-2759856	NZ_CP041213.1_1280632-1280661|NZ_CP041213.1_2432651-2432680|NZ_CP041213.1_2739633-2739662|NZ_CP041213.1_2719419-2719448|NZ_CP041213.1_2434706-2434735	II-A,II-B:II-A,II-B:II-A,II-B	40,40,37	40	TypeII-B,TypeII-A,TypeII-C	csa3,DinG,cas3,WYL,casR,RT,cas6,cas8b2,cas7,cas5,cas2,DEDDh,csn2,cas1,cas9	NA|236aa|up_7|NZ_CP041213.1_2744250_2744958_+,NA|202aa|up_6|NZ_CP041213.1_2745016_2745622_+,NA|121aa|up_0|NZ_CP041213.1_2756854_2757217_-,NA|160aa|down_4|NZ_CP041213.1_2766919_2767399_-	NA|141aa|up_9|NZ_CP041213.1_2743372_2743795_+	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|142aa|up_8|NZ_CP041213.1_2743810_2744236_+	COG2856, COG2856, Predicted Zn peptidase [Amino acid transport and metabolism]	NA|236aa|up_7|NZ_CP041213.1_2744250_2744958_+	NA	NA|202aa|up_6|NZ_CP041213.1_2745016_2745622_+	NA	NA|388aa|up_5|NZ_CP041213.1_2745684_2746848_+	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|343aa|up_4|NZ_CP041213.1_2752576_2753605_-	pfam10609, ParA, NUBPL iron-transfer P-loop NTPase	NA|509aa|up_3|NZ_CP041213.1_2753873_2755400_+	COG1705, FlgJ, Muramidase (flagellum-specific) [Cell motility and secretion / Intracellular trafficking and secretion]	NA|284aa|up_2|NZ_CP041213.1_2755437_2756289_-	cd19133, AKR_AKR5F1, the AKR5F family of aldo-keto reductase (AKR)	NA|141aa|up_1|NZ_CP041213.1_2756310_2756733_-	cd01109, HTH_YyaN, Helix-Turn-Helix DNA binding domain of the MerR-like transcription regulators YyaN and YraB	NA|121aa|up_0|NZ_CP041213.1_2756854_2757217_-	NA	csn2|221aa|down_0|NZ_CP041213.1_2760548_2761211_-	cd09758, Csn2, CRISPR/Cas system-associated protein Csn2	cas2|114aa|down_1|NZ_CP041213.1_2761200_2761542_-	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	cas1|289aa|down_2|NZ_CP041213.1_2761538_2762405_-	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1	cas9|1335aa|down_3|NZ_CP041213.1_2762405_2766410_-	COG3513, COG3513, Predicted CRISPR-associated nuclease, contains McrA/HNH-nuclease and RuvC-like nuclease domain [Defense mechanisms]	NA|160aa|down_4|NZ_CP041213.1_2766919_2767399_-	NA	NA|131aa|down_5|NZ_CP041213.1_2767622_2768015_-	PRK00132, rpsI, 30S ribosomal protein S9; Reviewed	NA|146aa|down_6|NZ_CP041213.1_2768036_2768474_-	PRK09216, rplM, 50S ribosomal protein L13; Reviewed	NA|249aa|down_7|NZ_CP041213.1_2768668_2769415_-	PRK00021, truA, tRNA pseudouridine(38-40) synthase TruA	NA|266aa|down_8|NZ_CP041213.1_2769420_2770218_-	COG0619, CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters [Inorganic ion transport and metabolism]	NA|289aa|down_9|NZ_CP041213.1_2770220_2771087_-	PRK13634, cbiO, cobalt transporter ATP-binding subunit; Provisional
