The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP035368	Haemophilus parainfluenzae strain LC_1315_18 chromosome, complete genome	2067650	772749	834901	2067650	transposase,tRNA,tail,terminase,lysis,plate,integrase,head,portal,capsid	Mannheimia_phage(44.74%)	81	761448:761465	832600:832617
761448:761465	attL	TAAAAAATAACCGCACTT	NA	NA	NA	NA
WP_128787176.1|772749_774081_+|integrase	integrase arm-type DNA-binding domain-containing protein	integrase	A0A1V0E8G8	Vibrio_phage	28.9	7.1e-44
WP_128787177.1|774061_774229_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_128787178.1|774228_774744_-	pyrophosphatase	NA	B3GVZ0	Streptococcus_phage	42.3	3.7e-25
WP_128787179.1|774764_775250_-	hypothetical protein	NA	NA	NA	NA	NA
WP_128787180.1|775266_777465_-	replication endonuclease	NA	Q94N00	Haemophilus_virus	44.7	7.8e-173
WP_128787181.1|777472_777781_-	hypothetical protein	NA	NA	NA	NA	NA
WP_128787182.1|777770_778031_-	hypothetical protein	NA	NA	NA	NA	NA
WP_128788002.1|778039_778402_-	hypothetical protein	NA	NA	NA	NA	NA
WP_128787183.1|778417_778678_-	hypothetical protein	NA	NA	NA	NA	NA
WP_128787184.1|778771_779020_-	ogr/Delta-like zinc finger family protein	NA	NA	NA	NA	NA
WP_128787185.1|779031_779505_-	hypothetical protein	NA	NA	NA	NA	NA
WP_128787186.1|779683_780007_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005633752.1|780224_780380_-	hypothetical protein	NA	NA	NA	NA	NA
WP_128787187.1|780422_780620_-	hypothetical protein	NA	NA	NA	NA	NA
WP_128787188.1|780654_780897_+	hypothetical protein	NA	NA	NA	NA	NA
WP_128788003.1|781042_781693_+	helix-turn-helix domain-containing protein	NA	A0A0M3LPF9	Mannheimia_phage	37.6	3.3e-26
WP_112080615.1|781805_782525_+	WYL domain-containing protein	NA	NA	NA	NA	NA
WP_128787189.1|782521_782752_+	excalibur calcium-binding domain-containing protein	NA	Q19UP2	Mannheimia_phage	43.4	8.3e-09
WP_128787190.1|782754_783423_+	hypothetical protein	NA	NA	NA	NA	NA
WP_128787191.1|783456_783729_+	hypothetical protein	NA	NA	NA	NA	NA
WP_128787192.1|783751_784945_-	phage late control D family protein	NA	R9QBT3	Mannheimia_phage	52.5	2.2e-105
WP_128787193.1|784944_785382_-|tail	phage tail protein	tail	A0A0M3LQ18	Mannheimia_phage	57.4	2.0e-40
WP_172622004.1|785381_785543_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005633772.1|785710_785857_-|tail	GpE family phage tail protein	tail	E5E3Q0	Burkholderia_phage	65.0	2.2e-07
WP_128787194.1|785856_786156_-|tail	phage tail assembly protein	tail	A0A0F7LBN9	Escherichia_phage	41.8	2.6e-10
WP_005633774.1|786241_786748_-|tail	phage major tail tube protein	tail	Q19UP8	Mannheimia_phage	60.1	3.2e-53
WP_128787195.1|786751_787936_-|tail	phage tail sheath subtilisin-like domain-containing protein	tail	A0A1S6KZY7	Salmonella_phage	47.9	7.3e-101
WP_128787196.1|788384_788603_-	hypothetical protein	NA	NA	NA	NA	NA
WP_128787197.1|788653_789499_-	hypothetical protein	NA	F6MIM2	Haemophilus_phage	72.4	1.4e-117
WP_128787198.1|789555_789675_-	Com family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_128787199.1|789849_790338_-	enoyl-CoA hydratase	NA	F6MIM0	Haemophilus_phage	57.4	2.5e-47
WP_128787200.1|790330_791086_-	hypothetical protein	NA	Q94MX9	Haemophilus_virus	53.2	8.7e-31
WP_128787201.1|791096_792008_-|tail	tail fiber protein	tail	M1TAS6	Escherichia_phage	54.4	5.0e-41
WP_128787202.1|792008_792575_-|tail	phage tail protein I	tail	A0A218M4J3	Erwinia_phage	37.5	3.7e-26
WP_128787203.1|792567_793482_-|plate	baseplate J/gp47 family protein	plate	Q19UQ5	Mannheimia_phage	49.3	7.7e-74
WP_118790004.1|793478_793814_-	GPW/gp25 family protein	NA	Q19UQ6	Mannheimia_phage	56.6	2.6e-19
WP_128787204.1|793813_794359_-|plate	phage baseplate assembly protein V	plate	A0A0M3LPY9	Mannheimia_phage	61.0	1.5e-40
WP_128787205.1|797559_797907_+	hypothetical protein	NA	NA	NA	NA	NA
WP_128787206.1|797907_798369_-	phage virion morphogenesis protein	NA	Q19UR2	Mannheimia_phage	42.0	2.2e-21
WP_005633794.1|798368_798839_-|tail	phage tail protein	tail	E5G6N3	Salmonella_phage	47.1	4.3e-28
WP_128787207.1|798804_799068_-	hypothetical protein	NA	NA	NA	NA	NA
WP_065245591.1|799064_799280_-	TraR/DksA family transcriptional regulator	NA	A0A0M3LS11	Mannheimia_phage	47.9	1.4e-10
WP_128788004.1|799276_799492_-	hypothetical protein	NA	NA	NA	NA	NA
WP_128787208.1|799454_799805_-	chemotaxis protein	NA	NA	NA	NA	NA
WP_128787209.1|799789_800308_-	lysozyme	NA	A0A0M3LPQ1	Mannheimia_phage	46.9	7.3e-37
WP_128787210.1|800300_800522_-|lysis	lysis protein	lysis	NA	NA	NA	NA
WP_128787211.1|800523_800733_-|tail	tail protein X	tail	E5G6M9	Salmonella_phage	39.1	7.8e-06
WP_128787212.1|800732_801239_-|head	head completion/stabilization protein	head	A0A0M3LPQ0	Mannheimia_phage	45.6	1.3e-33
WP_128787213.1|801363_802026_-|terminase	terminase	terminase	Q19US0	Mannheimia_phage	45.9	5.4e-45
WP_128787214.1|802025_803057_-|capsid	phage major capsid protein, P2 family	capsid	Q19UT3	Mannheimia_phage	56.1	9.9e-102
WP_128787215.1|803067_803886_-|capsid	GPO family capsid scaffolding protein	capsid	Q19UT4	Mannheimia_phage	51.1	1.3e-67
WP_149785864.1|804050_805826_+|terminase	terminase	terminase	A0A0M3LRV4	Mannheimia_phage	65.1	1.4e-217
WP_128787217.1|805835_806846_+|portal	phage portal protein	portal	Q19UT6	Mannheimia_phage	60.7	9.6e-118
WP_128787218.1|807528_808107_+	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_128787220.1|808645_809935_+	DUF2931 family protein	NA	NA	NA	NA	NA
WP_095176613.1|810982_811609_+	CadD family cadmium resistance transporter	NA	NA	NA	NA	NA
WP_128787221.1|811717_811936_-	hypothetical protein	NA	NA	NA	NA	NA
WP_128787222.1|813115_813652_+	elongation factor P hydroxylase	NA	NA	NA	NA	NA
WP_128787223.1|813749_814832_+	peptide chain release factor 1	NA	W8EDB3	Pseudomonas_phage	42.2	1.3e-08
WP_005644900.1|814884_815325_+	RDD family protein	NA	NA	NA	NA	NA
WP_128787224.1|815324_816203_+	peptide chain release factor N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
WP_126471625.1|816202_817006_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_128787225.1|817018_817873_+	3-deoxy-8-phosphooctulonate synthase	NA	E3T537	Cafeteria_roenbergensis_virus	35.6	2.4e-37
WP_128787226.1|817939_818887_+	2-hydroxyacid dehydrogenase	NA	M1H9J0	Paramecium_bursaria_Chlorella_virus	30.8	2.0e-24
WP_128787227.1|818886_820068_+	lipoprotein-releasing ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_014065207.1|820071_820755_+	lipoprotein-releasing ABC transporter ATP-binding protein LolD	NA	G9BWD6	Planktothrix_phage	41.0	1.3e-38
WP_128787228.1|820754_822005_+	lipoprotein-releasing ABC transporter permease subunit LolE	NA	NA	NA	NA	NA
WP_128787229.1|822064_822475_-	DUF1043 family protein	NA	NA	NA	NA	NA
WP_128787230.1|822564_822915_-	RidA family protein	NA	NA	NA	NA	NA
WP_049355553.1|823026_823743_+	YwiC-like family protein	NA	NA	NA	NA	NA
WP_049355552.1|823744_824419_+	sel1 repeat family protein	NA	NA	NA	NA	NA
WP_128787231.1|824494_825118_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_128787232.1|825059_825650_+|transposase	IS3 family transposase	transposase	A0A2I6AZV9	Macacine_betaherpesvirus	62.8	7.2e-57
WP_149785865.1|825694_827704_-|tRNA	bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC	tRNA	NA	NA	NA	NA
WP_126471598.1|827886_829107_+	beta-ketoacyl-ACP synthase I	NA	NA	NA	NA	NA
WP_049372483.1|829477_831202_+	acetolactate synthase 3 large subunit	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	29.4	3.6e-56
WP_005695880.1|831201_831693_+	acetolactate synthase small subunit	NA	NA	NA	NA	NA
WP_128787234.1|831922_832588_-	DUF484 family protein	NA	NA	NA	NA	NA
WP_128787235.1|832652_833951_-	adenylosuccinate synthase	NA	W5S5V7	Pithovirus	36.1	4.8e-69
832600:832617	attR	TAAAAAATAACCGCACTT	NA	NA	NA	NA
WP_128787122.1|834082_834553_-|transposase	IS3 family transposase	transposase	A0A2I6AZV9	Macacine_betaherpesvirus	61.9	5.8e-49
WP_149785904.1|834613_834901_-|transposase	IS3 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP035368	Haemophilus parainfluenzae strain LC_1315_18 chromosome, complete genome	2067650	1267612	1275893	2067650		Bacillus_virus(33.33%)	8	NA	NA
WP_005696347.1|1267612_1268260_+	GTP cyclohydrolase II	NA	A0A2H4PQS2	Staphylococcus_phage	44.8	1.7e-43
WP_128787484.1|1268305_1268449_-	hypothetical protein	NA	NA	NA	NA	NA
WP_128787485.1|1268617_1269304_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	50.2	6.0e-55
WP_049357348.1|1269296_1269722_+	6-carboxytetrahydropterin synthase QueD	NA	A0A1U9WRB3	Streptococcus_virus	41.8	3.0e-20
WP_128787486.1|1269727_1270357_+	7-carboxy-7-deazaguanine synthase QueE	NA	A0A1V0DYC7	Dinoroseobacter_phage	33.6	4.1e-10
WP_128787487.1|1270517_1272416_+	DNA topoisomerase IV subunit B	NA	G3M9Z3	Bacillus_virus	35.9	5.1e-96
WP_128787488.1|1272432_1273626_+	nitrite reductase, copper-containing	NA	NA	NA	NA	NA
WP_128787489.1|1273637_1275893_+	DNA topoisomerase IV subunit A	NA	G3M9Z5	Bacillus_virus	36.6	5.7e-86
>prophage 3
NZ_CP035368	Haemophilus parainfluenzae strain LC_1315_18 chromosome, complete genome	2067650	1563910	1579232	2067650	tRNA	Vibrio_phage(37.5%)	15	NA	NA
WP_049374949.1|1563910_1564927_+	nucleoid-associated protein YejK	NA	A0A1V0E8C0	Vibrio_phage	41.3	7.3e-65
WP_126470685.1|1564996_1565410_+	outer membrane protein assembly factor BamE	NA	NA	NA	NA	NA
WP_128787682.1|1565473_1566175_+	response regulator	NA	W8CYM9	Bacillus_phage	36.2	2.4e-30
WP_128787683.1|1566174_1567578_+	envelope stress sensor histidine kinase CpxA	NA	NA	NA	NA	NA
WP_128787684.1|1567615_1569784_-	heavy metal translocating P-type ATPase	NA	A0A218MNH6	uncultured_virus	52.5	7.7e-189
WP_049356372.1|1569770_1569980_-	heavy-metal-associated domain-containing protein	NA	A0A218MNH0	uncultured_virus	49.3	6.1e-11
WP_005699815.1|1570060_1570447_+	Cu(I)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_005696757.1|1570449_1570767_-	met regulon transcriptional regulator MetJ	NA	NA	NA	NA	NA
WP_128787685.1|1570898_1571786_-	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	46.9	6.2e-60
WP_128787686.1|1572008_1572200_-	carbon storage regulator CsrA	NA	A0A2I7RT00	Vibrio_phage	60.8	1.9e-11
WP_128787687.1|1572278_1574903_-|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	38.0	7.9e-79
WP_014064852.1|1575090_1575516_-	universal stress protein UspA	NA	NA	NA	NA	NA
WP_128787688.1|1575620_1576913_-	Xaa-Pro aminopeptidase	NA	NA	NA	NA	NA
WP_128787689.1|1576925_1577474_-	YecA family protein	NA	NA	NA	NA	NA
WP_005696764.1|1577585_1579232_-	chaperonin GroEL	NA	A0A2I7SAK5	Vibrio_phage	68.3	1.4e-190
