The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP027107	Cronobacter sakazakii strain CS-931 chromosome, complete genome	4267208	356534	392183	4267208	tail,terminase,lysis,holin	Cronobacter_phage(78.57%)	50	NA	NA
WP_053531972.1|356534_356735_-	AlpA family phage regulatory protein	NA	K7P7V0	Enterobacteria_phage	68.2	2.4e-20
WP_175299713.1|356810_357458_-	DNA methyltransferase	NA	I6PDF5	Cronobacter_phage	95.3	1.6e-118
WP_165154977.1|357454_357763_-	hypothetical protein	NA	NA	NA	NA	NA
WP_175299714.1|357772_358279_-	single-stranded DNA-binding protein	NA	A0A0A0P1Q9	Enterobacteria_phage	83.2	9.6e-50
WP_175299715.1|358282_359014_-	ERF family protein	NA	A0A0N7CFJ3	Salmonella_phage	56.9	6.2e-58
WP_105537572.1|359144_359321_-	cell division protein FtsZ	NA	G8C7T2	Escherichia_phage	52.1	1.5e-05
WP_175299716.1|359346_360237_-	hypothetical protein	NA	NA	NA	NA	NA
WP_175299717.1|360633_361239_-	helix-turn-helix domain-containing protein	NA	A0A2D1GM27	Escherichia_phage	50.6	5.4e-15
WP_097578481.1|361347_361569_+	helix-turn-helix domain-containing protein	NA	A0A0N7C1T6	Escherichia_phage	54.9	2.4e-13
WP_097566031.1|361630_361975_+	hypothetical protein	NA	I6PCV6	Cronobacter_phage	78.2	3.9e-39
WP_175299718.1|362060_362942_+	helix-turn-helix domain-containing protein	NA	A0A2H4J2W5	uncultured_Caudovirales_phage	60.7	9.2e-48
WP_175299719.1|362938_363673_+	DNA replication protein	NA	I6PBN0	Cronobacter_phage	85.3	2.3e-113
WP_175299720.1|363669_364017_+	hypothetical protein	NA	I6PDF7	Cronobacter_phage	49.0	7.8e-19
WP_165154959.1|364419_364875_+	hypothetical protein	NA	I6PD71	Cronobacter_phage	90.7	1.5e-78
WP_175299721.1|364878_365079_+	hypothetical protein	NA	I6PCV7	Cronobacter_phage	95.5	6.7e-31
WP_032970690.1|365081_365369_+	DUF1364 domain-containing protein	NA	I6PDJ4	Cronobacter_phage	98.9	7.1e-50
WP_104677423.1|365365_365728_+	RusA family crossover junction endodeoxyribonuclease	NA	I6PBN1	Cronobacter_phage	93.3	1.6e-59
WP_104677422.1|365724_366420_+	antiterminator	NA	I6PDF8	Cronobacter_phage	74.9	3.1e-91
WP_097578479.1|366693_367173_+	hypothetical protein	NA	K7PKJ4	Enterobacteria_phage	42.5	3.1e-34
WP_097578419.1|367280_367466_+	hypothetical protein	NA	NA	NA	NA	NA
WP_175299722.1|367605_367992_+	hypothetical protein	NA	NA	NA	NA	NA
WP_175299723.1|367988_368267_+|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_175299724.1|368253_368694_+	lysozyme	NA	A0A0M4R365	Salmonella_phage	74.5	7.8e-56
WP_175299725.1|368690_369164_+|lysis	lysis protein	lysis	I6PDF9	Cronobacter_phage	70.5	1.4e-47
WP_175299726.1|369393_369672_+	hypothetical protein	NA	NA	NA	NA	NA
WP_175299727.1|369716_369989_-	hypothetical protein	NA	NA	NA	NA	NA
WP_175299728.1|369975_370170_-	DUF2158 domain-containing protein	NA	NA	NA	NA	NA
WP_007850297.1|370192_370717_+|terminase	terminase small subunit	terminase	I6PDJ6	Cronobacter_phage	97.7	8.0e-92
WP_007850295.1|370716_372207_+	hypothetical protein	NA	I6PBN3	Cronobacter_phage	98.2	3.6e-294
WP_175299729.1|372206_373622_+	DUF4055 domain-containing protein	NA	I6PDG0	Cronobacter_phage	98.7	1.9e-268
WP_175299730.1|373605_374709_+	hypothetical protein	NA	I6PD76	Cronobacter_phage	99.2	3.3e-204
WP_007850285.1|374784_375468_+	hypothetical protein	NA	I6PCW0	Cronobacter_phage	99.6	2.7e-100
WP_044594637.1|375467_376430_+	hypothetical protein	NA	I6PDJ7	Cronobacter_phage	97.5	2.9e-172
WP_014728228.1|376441_376693_+	Ig-like domain-containing protein	NA	I6PBN5	Cronobacter_phage	100.0	3.0e-36
WP_175299731.1|376733_377216_+	hypothetical protein	NA	I6PDG1	Cronobacter_phage	96.2	4.3e-84
WP_014728229.1|377219_377570_+	hypothetical protein	NA	I6PD77	Cronobacter_phage	100.0	2.9e-61
WP_104677414.1|377571_377985_+	HK97 gp10 family phage protein	NA	I6PCW1	Cronobacter_phage	96.4	2.4e-67
WP_175299732.1|377981_378395_+	hypothetical protein	NA	I6PDJ8	Cronobacter_phage	96.4	1.5e-72
WP_175299733.1|378444_379401_+	Ig-like domain-containing protein	NA	I6PBN6	Cronobacter_phage	91.5	5.7e-152
WP_175299734.1|379438_379750_+	hypothetical protein	NA	I6PDG2	Cronobacter_phage	96.1	3.7e-52
WP_171999300.1|379797_380067_+	DUF1799 domain-containing protein	NA	I6PD79	Cronobacter_phage	88.7	3.3e-33
WP_175299735.1|380059_382774_+|tail	phage tail tape measure protein	tail	I6PCW3	Cronobacter_phage	91.8	0.0e+00
WP_175299736.1|382859_383429_+	zinc ribbon domain-containing protein	NA	I6PDJ9	Cronobacter_phage	84.1	2.5e-83
WP_175299737.1|383493_383841_+|tail	phage tail protein	tail	I6PBN7	Cronobacter_phage	97.4	7.0e-60
WP_007850246.1|383837_384614_+|tail	phage minor tail protein L	tail	I6PDG3	Cronobacter_phage	99.6	6.0e-152
WP_175299738.1|384616_385336_+	C40 family peptidase	NA	I6PD81	Cronobacter_phage	97.5	4.1e-147
WP_007850243.1|385332_385923_+|tail	tail assembly protein	tail	I6PCW4	Cronobacter_phage	99.0	5.1e-103
WP_175299739.1|385973_389282_+	host specificity protein J	NA	I6PDK0	Cronobacter_phage	98.9	0.0e+00
WP_014728238.1|389284_390241_+	hypothetical protein	NA	I6PBN9	Cronobacter_phage	100.0	2.3e-185
WP_175299740.1|390299_392183_+|tail	tail fiber domain-containing protein	tail	I6PDG4	Cronobacter_phage	96.7	4.7e-283
>prophage 2
NZ_CP027107	Cronobacter sakazakii strain CS-931 chromosome, complete genome	4267208	736221	745211	4267208		Burkholderia_phage(33.33%)	9	NA	NA
WP_007794693.1|736221_736461_-	DinI family protein	NA	K7PKM2	Enterobacterial_phage	84.8	5.5e-32
WP_097573561.1|736614_737739_-	porin OmpC	NA	Q1MVN1	Enterobacteria_phage	56.2	2.3e-104
WP_007868970.1|738384_739083_+	phosphohydrolase	NA	S4W232	Pandoravirus	26.3	1.3e-07
WP_029039561.1|739209_740577_+	DNA (cytosine-5-)-methyltransferase	NA	E5E3X6	Burkholderia_phage	53.4	2.2e-101
WP_029039562.1|740560_741058_+	very short patch repair endonuclease	NA	E5E3X5	Burkholderia_phage	49.0	1.2e-33
WP_029039563.1|741061_741973_-	drug/metabolite exporter YedA	NA	NA	NA	NA	NA
WP_029039564.1|742151_743066_+	DUF808 domain-containing protein	NA	NA	NA	NA	NA
WP_004388133.1|743155_743338_+	DUF2158 domain-containing protein	NA	NA	NA	NA	NA
WP_015386531.1|743540_745211_+	cellulose biosynthesis regulator YedQ	NA	A0A127AWB9	Bacillus_phage	38.6	1.7e-23
>prophage 3
NZ_CP027107	Cronobacter sakazakii strain CS-931 chromosome, complete genome	4267208	1538512	1548710	4267208	tRNA	Bacillus_phage(14.29%)	12	NA	NA
WP_004387814.1|1538512_1538977_-	C40 family peptidase	NA	S5MM68	Bacillus_phage	36.0	1.0e-10
WP_007894056.1|1539054_1539798_-	vitamin B12 ABC transporter ATP-binding protein BtuD	NA	A0A2R8FG22	Brazilian_cedratvirus	28.0	2.4e-09
WP_007894053.1|1539800_1540352_-	glutathione peroxidase	NA	NA	NA	NA	NA
WP_029038968.1|1540381_1541383_-	vitamin B12 ABC transporter permease BtuC	NA	NA	NA	NA	NA
WP_004387086.1|1541460_1541760_-	integration host factor subunit alpha	NA	A0A0H3UZA0	Geobacillus_virus	40.0	7.2e-13
WP_007894049.1|1541764_1544152_-|tRNA	phenylalanine--tRNA ligase subunit beta	tRNA	A0A1L3IZU3	BeAn_58058_virus	27.1	7.3e-07
WP_007867262.1|1544167_1545151_-|tRNA	phenylalanine--tRNA ligase subunit alpha	tRNA	A0A2H4UW22	Bodo_saltans_virus	42.6	6.4e-34
WP_124752678.1|1545370_1545565_-	pheST operon leader peptide PheM	NA	NA	NA	NA	NA
WP_000124849.1|1545536_1545893_-	50S ribosomal protein L20	NA	NA	NA	NA	NA
WP_001124225.1|1545940_1546138_-	50S ribosomal protein L35	NA	NA	NA	NA	NA
WP_012905609.1|1546235_1546778_-	translation initiation factor IF-3	NA	A0A2L0UZ54	Agrobacterium_phage	32.3	1.1e-14
WP_004387090.1|1546781_1548710_-|tRNA	threonine--tRNA ligase	tRNA	A0A2K9L297	Tupanvirus	37.6	1.1e-130
>prophage 4
NZ_CP027107	Cronobacter sakazakii strain CS-931 chromosome, complete genome	4267208	1598466	1666539	4267208	tRNA,portal,capsid,integrase,terminase,protease,holin,head,lysis,tail	Cronobacter_phage(22.0%)	87	1646869:1646884	1662161:1662176
WP_007849374.1|1598466_1598991_+|tRNA	YbaK/prolyl-tRNA synthetase associated domain-containing protein	tRNA	NA	NA	NA	NA
WP_007866964.1|1599178_1599625_+	DUF441 domain-containing protein	NA	NA	NA	NA	NA
WP_097573641.1|1599697_1600882_+	CynX/NimT family MFS transporter	NA	NA	NA	NA	NA
WP_004386635.1|1600883_1601591_-	CTP synthase	NA	NA	NA	NA	NA
WP_007893923.1|1601794_1602151_+	DUF488 domain-containing protein	NA	NA	NA	NA	NA
WP_004386637.1|1602147_1602453_-	hypothetical protein	NA	NA	NA	NA	NA
WP_029038977.1|1602889_1603831_+	DUF535 domain-containing protein	NA	NA	NA	NA	NA
WP_007670864.1|1603965_1604139_-	hypothetical protein	NA	NA	NA	NA	NA
WP_004385761.1|1604263_1605232_-	chemotaxis protein CheV	NA	Q56AR1	Bacillus_thuringiensis_phage	27.7	1.1e-30
WP_004385762.1|1605458_1605629_-	hypothetical protein	NA	NA	NA	NA	NA
WP_004385763.1|1605776_1606013_+	hypothetical protein	NA	NA	NA	NA	NA
WP_004385764.1|1606129_1606354_-	hypothetical protein	NA	NA	NA	NA	NA
WP_004385765.1|1606337_1606550_-	cold-shock protein	NA	A0A1W6JNX5	Morganella_phage	77.1	1.7e-24
WP_004385766.1|1607083_1607737_+	epoxyqueuosine reductase QueH	NA	NA	NA	NA	NA
WP_007866942.1|1607803_1608265_-	hypothetical protein	NA	NA	NA	NA	NA
WP_004385768.1|1608442_1608616_+	hypothetical protein	NA	NA	NA	NA	NA
WP_007849347.1|1609005_1610544_+	Tar ligand binding domain-containing protein	NA	NA	NA	NA	NA
WP_007900322.1|1610747_1611554_+	phosphotransferase	NA	NA	NA	NA	NA
WP_007900325.1|1611872_1612475_+	hypothetical protein	NA	NA	NA	NA	NA
WP_029039687.1|1612638_1613577_-	alpha/beta hydrolase	NA	A0A0G2YDK2	Acanthamoeba_polyphaga_mimivirus	22.9	1.3e-07
WP_097573643.1|1613647_1614583_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_029039688.1|1614706_1615123_-	VOC family protein	NA	NA	NA	NA	NA
WP_007900334.1|1615461_1615809_-	outer membrane protein assembly factor BamE	NA	NA	NA	NA	NA
WP_012125051.1|1615805_1616180_-	hypothetical protein	NA	NA	NA	NA	NA
WP_007900335.1|1616547_1616700_-	isocitrate dehydrogenase (NADP(+))	NA	Q77Z09	Phage_21	94.0	1.2e-19
WP_024558003.1|1617287_1617638_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_029039689.1|1617641_1618178_+	ImmA/IrrE family metallo-endopeptidase	NA	NA	NA	NA	NA
WP_063265412.1|1618968_1619550_-|tail	tail fiber assembly protein	tail	K7PMH7	Enterobacteria_phage	40.9	1.2e-32
WP_129088559.1|1619549_1620440_-|tail	tail fiber protein	tail	F1C569	Cronobacter_phage	80.4	6.6e-54
WP_007898651.1|1620476_1621433_-	hypothetical protein	NA	I6PBN9	Cronobacter_phage	63.0	1.8e-118
WP_046623084.1|1621435_1624642_-	host specificity protein J	NA	F1C571	Cronobacter_phage	96.2	0.0e+00
WP_007895145.1|1624691_1625288_-|tail	tail assembly protein	tail	F1C572	Cronobacter_phage	98.0	2.0e-102
WP_029039764.1|1625284_1625989_-	C40 family peptidase	NA	F1C573	Cronobacter_phage	98.7	3.3e-141
WP_046623085.1|1625991_1626744_-|tail	phage minor tail protein L	tail	F1C574	Cronobacter_phage	99.2	6.9e-145
WP_007898321.1|1626750_1627089_-|tail	phage tail protein	tail	K7PKL8	Enterobacterial_phage	61.6	4.7e-37
WP_175299784.1|1627135_1629532_-|tail	phage tail tape measure protein	tail	Q9MCU6	Escherichia_phage	49.9	5.2e-186
WP_171965163.1|1629638_1630103_-	hypothetical protein	NA	NA	NA	NA	NA
WP_171965164.1|1630154_1630310_-	hypothetical protein	NA	A0A286S1P2	Klebsiella_phage	76.0	1.0e-15
WP_171965165.1|1630315_1630798_-|tail	phage tail assembly chaperone family protein, TAC	tail	K7PJU9	Enterobacteria_phage	80.5	4.1e-50
WP_007898337.1|1630846_1631350_-|tail	phage tail fibers	tail	Q9MCU9	Escherichia_phage	85.8	2.9e-75
WP_105517584.1|1631401_1631767_-	DUF3168 domain-containing protein	NA	K7PHI9	Enterobacteria_phage	81.8	1.2e-54
WP_084997510.1|1631763_1632249_-	HK97 gp10 family phage protein	NA	A0A0U3TGT7	Pseudomonas_phage	67.5	1.5e-55
WP_104675811.1|1632241_1632574_-|head	phage head closure protein	head	A0A286S2A2	Klebsiella_phage	71.8	5.9e-40
WP_104675812.1|1632576_1632756_-	hypothetical protein	NA	A0A286S2A5	Klebsiella_phage	53.0	9.6e-05
WP_007898361.1|1632826_1633153_-|head,tail	phage gp6-like head-tail connector protein	head,tail	S4TSQ3	Salmonella_phage	57.4	2.1e-26
WP_171965166.1|1633149_1634193_-|head,tail	phage gp6-like head-tail connector protein	head,tail	S4TNN1	Salmonella_phage	84.1	3.3e-105
WP_046623019.1|1634189_1635530_-|portal	phage portal protein	portal	S4TTG7	Salmonella_phage	81.0	9.8e-211
WP_007889812.1|1635529_1635697_-	hypothetical protein	NA	S4TR49	Salmonella_phage	67.3	3.2e-10
WP_029039747.1|1635734_1637675_-|capsid	phage major capsid protein	capsid	S4TNE3	Salmonella_phage	92.0	0.0e+00
WP_029039748.1|1637733_1639392_-|terminase	terminase large subunit	terminase	Q3HQS7	Burkholderia_phage	71.1	5.2e-238
WP_029039749.1|1639395_1639893_-|terminase	terminase small subunit	terminase	S4TNN3	Salmonella_phage	70.9	1.8e-53
WP_029039468.1|1640288_1640654_-	HNH endonuclease	NA	S4TTG9	Salmonella_phage	86.6	1.3e-51
WP_029039467.1|1640646_1641240_-	hypothetical protein	NA	S4TR53	Salmonella_phage	64.8	5.5e-73
WP_029039466.1|1641328_1641499_+	hypothetical protein	NA	NA	NA	NA	NA
WP_029039465.1|1641636_1643094_-	glycosyl transferase	NA	F1C589	Cronobacter_phage	91.3	2.3e-269
WP_133051736.1|1643200_1643689_-	hypothetical protein	NA	NA	NA	NA	NA
WP_029039463.1|1643932_1644835_-|protease	serine protease	protease	NA	NA	NA	NA
WP_029039461.1|1645533_1645998_-|lysis	lysis protein	lysis	G0ZNC9	Cronobacter_phage	61.4	3.5e-38
WP_007900994.1|1645997_1646621_-	glycoside hydrolase family 19 protein	NA	F1C591	Cronobacter_phage	92.3	2.0e-105
WP_007900995.1|1646617_1646902_-|holin	phage holin family protein	holin	K7PKN9	Enterobacterial_phage	54.3	2.9e-19
1646869:1646884	attL	CGTTGGTCAGCACCAG	NA	NA	NA	NA
WP_007900996.1|1646888_1647266_-|holin	phage holin family protein	holin	F1C592	Cronobacter_phage	91.3	5.1e-56
WP_007900997.1|1647377_1647533_-	DUF3927 family protein	NA	A0A0A0YRI9	Escherichia_phage	64.0	2.0e-06
WP_007901009.1|1647529_1647955_-	tellurite/colicin resistance protein	NA	Q71TK7	Escherichia_phage	82.3	5.2e-57
WP_007901011.1|1648277_1649108_-	antitermination protein	NA	K7P7B9	Enterobacteria_phage	48.1	2.9e-59
WP_007901015.1|1649126_1650176_-	DUF968 domain-containing protein	NA	A0A291AWV9	Escherichia_phage	64.8	2.5e-132
WP_080818326.1|1650172_1650898_-	phage antirepressor KilAC domain-containing protein	NA	G0ZND1	Cronobacter_phage	53.9	4.9e-55
WP_004388343.1|1650913_1651297_-	RusA family crossover junction endodeoxyribonuclease	NA	A0A1C9IIA0	Salmonella_phage	77.2	2.2e-51
WP_007901019.1|1651293_1651623_-|protease	SOS-response repressor and protease LexA	protease	U5P451	Shigella_phage	50.0	1.9e-19
WP_105577072.1|1651619_1652798_-	phage N-6-adenine-methyltransferase	NA	A5LH72	Enterobacteria_phage	82.4	2.2e-105
WP_007725982.1|1652797_1653034_-	PerC family transcriptional regulator	NA	NA	NA	NA	NA
WP_105567900.1|1653030_1653927_-	conserved phage C-terminal domain-containing protein	NA	A0A1C9IHW0	Salmonella_phage	61.0	6.7e-38
WP_123947956.1|1653923_1654091_-	DUF4222 domain-containing protein	NA	NA	NA	NA	NA
WP_105567902.1|1654284_1654821_-	hypothetical protein	NA	NA	NA	NA	NA
WP_032986805.1|1654849_1655080_-	helix-turn-helix domain-containing protein	NA	U5P445	Shigella_phage	64.1	4.1e-16
WP_032806734.1|1655167_1655836_+	LexA family transcriptional regulator	NA	U5P0T5	Shigella_phage	76.8	7.8e-100
WP_007901038.1|1656125_1657055_+	recombination-associated protein RdgC	NA	S4TWL4	Salmonella_phage	60.3	2.7e-98
WP_007901050.1|1657151_1657442_+	hypothetical protein	NA	NA	NA	NA	NA
WP_007901052.1|1657438_1657795_+	hypothetical protein	NA	NA	NA	NA	NA
WP_029039458.1|1657787_1658519_+	hypothetical protein	NA	Q5QF30	Pseudomonas_virus	49.2	2.9e-55
WP_007901056.1|1658515_1658755_+	hypothetical protein	NA	G8C7S3	Escherichia_phage	63.1	4.2e-16
WP_029039456.1|1659069_1659315_+	excisionase	NA	NA	NA	NA	NA
WP_007901058.1|1659295_1660423_+|integrase	phage integrase Arm DNA-binding domain-containing protein	integrase	O21925	Phage_21	61.2	4.5e-124
WP_007849342.1|1660539_1661790_-	NADP-dependent isocitrate dehydrogenase	NA	Q77Z09	Phage_21	94.4	3.6e-21
WP_029039455.1|1661935_1662562_+	23S rRNA pseudouridine(2457) synthase RluE	NA	NA	NA	NA	NA
1662161:1662176	attR	CTGGTGCTGACCAACG	NA	NA	NA	NA
WP_004387964.1|1662572_1663022_+	NUDIX hydrolase	NA	NA	NA	NA	NA
WP_007901065.1|1663290_1665240_+	methyl-accepting chemotaxis protein	NA	NA	NA	NA	NA
WP_007849335.1|1665429_1666539_+|tRNA	tRNA 2-thiouridine(34) synthase MnmA	tRNA	NA	NA	NA	NA
>prophage 5
NZ_CP027107	Cronobacter sakazakii strain CS-931 chromosome, complete genome	4267208	1959076	1989486	4267208	portal,capsid,integrase,terminase,holin,plate,head,tail	Cronobacter_phage(84.85%)	40	1949442:1949456	1988702:1988716
1949442:1949456	attL	AGCGCGGCGTTCAGC	NA	NA	NA	NA
WP_054622760.1|1959076_1960777_-	hypothetical protein	NA	F1BUJ7	Cronobacter_phage	100.0	3.8e-268
WP_054622759.1|1960779_1961328_-	hypothetical protein	NA	F1BUJ9	Cronobacter_phage	100.0	3.3e-88
WP_175299768.1|1961299_1962025_-	hypothetical protein	NA	F1BUK1	Cronobacter_phage	99.2	4.6e-106
WP_054622757.1|1962014_1962533_-|tail	tail fiber assembly protein	tail	F1BUK2	Cronobacter_phage	100.0	1.1e-93
WP_104671534.1|1962532_1963489_-|tail	tail fiber protein	tail	F1BUK3	Cronobacter_phage	85.0	2.1e-167
WP_015386836.1|1964523_1965111_-	hypothetical protein	NA	F1BUK5	Cronobacter_phage	100.0	1.9e-110
WP_015386837.1|1965103_1966288_-|plate	baseplate J/gp47 family protein	plate	F1BUK6	Cronobacter_phage	100.0	2.4e-221
WP_007710803.1|1966284_1966611_-	DUF2590 family protein	NA	F1BUK8	Cronobacter_phage	100.0	2.8e-55
WP_015386838.1|1966610_1968671_-|tail	phage tail tape measure protein	tail	F1BUK9	Cronobacter_phage	99.9	0.0e+00
WP_007710810.1|1968858_1969116_-|tail	putative phage tail assembly chaperone	tail	A5X9I7	Aeromonas_virus	64.6	1.2e-21
WP_072186353.1|1969102_1969291_-	hypothetical protein	NA	F1BUL1	Cronobacter_phage	98.4	5.0e-28
WP_054622755.1|1969262_1969595_-	hypothetical protein	NA	F1BUL2	Cronobacter_phage	100.0	2.3e-52
WP_054622754.1|1969594_1969936_-	M15 family metallopeptidase	NA	F1BUL3	Cronobacter_phage	100.0	6.6e-55
WP_015386841.1|1969936_1970230_-|holin	phage holin family protein	holin	C7BGD7	Burkholderia_phage	51.8	1.1e-16
WP_015386842.1|1970239_1970695_-	DUF2597 family protein	NA	F1BUL4	Cronobacter_phage	100.0	2.2e-82
WP_054622753.1|1970691_1971819_-	DUF2586 family protein	NA	F1BUL5	Cronobacter_phage	100.0	2.7e-209
WP_015386844.1|1971815_1972523_-	hypothetical protein	NA	F1BUL6	Cronobacter_phage	100.0	5.0e-129
WP_015386845.1|1972522_1973023_-|tail	phage tail protein	tail	F1BUL7	Cronobacter_phage	100.0	6.5e-91
WP_007710835.1|1973019_1973472_-|head	head completion/stabilization protein	head	F1BUL8	Cronobacter_phage	100.0	1.7e-77
WP_054622752.1|1973568_1974267_-|terminase	terminase	terminase	F1BUM0	Cronobacter_phage	99.6	7.1e-128
WP_080781723.1|1974270_1975293_-|capsid	phage major capsid protein, P2 family	capsid	F1BUM2	Cronobacter_phage	99.4	6.0e-192
WP_069681845.1|1975353_1976178_-|capsid	GPO family capsid scaffolding protein	capsid	F1BUM4	Cronobacter_phage	96.4	1.2e-153
WP_054628492.1|1976342_1978121_+|terminase	terminase	terminase	F1BUM5	Cronobacter_phage	98.3	0.0e+00
WP_015386851.1|1978117_1979158_+|portal	phage portal protein	portal	F1BUM7	Cronobacter_phage	99.1	2.0e-198
WP_015386852.1|1979208_1979478_+	ogr/Delta-like zinc finger family protein	NA	F1BUM8	Cronobacter_phage	100.0	2.1e-43
WP_054622748.1|1979451_1979664_-	hypothetical protein	NA	NA	NA	NA	NA
WP_015386853.1|1979780_1981799_-	replication endonuclease	NA	F1BUM9	Cronobacter_phage	99.4	0.0e+00
WP_110809640.1|1981795_1982659_-	DNA adenine methylase	NA	F1BUN1	Cronobacter_phage	99.7	6.6e-160
WP_015386855.1|1982655_1982898_-	hypothetical protein	NA	NA	NA	NA	NA
WP_015386856.1|1982888_1983122_-	DUF2732 family protein	NA	NA	NA	NA	NA
WP_015386857.1|1983188_1983590_-	hypothetical protein	NA	F1BUN2	Cronobacter_phage	96.2	1.3e-70
WP_041461003.1|1983593_1983905_-	hypothetical protein	NA	F1BUN5	Cronobacter_phage	89.3	7.2e-48
WP_015386859.1|1984002_1984194_-	DUF2724 domain-containing protein	NA	NA	NA	NA	NA
WP_015386860.1|1984205_1984709_-	phage regulatory CII family protein	NA	F1BUN6	Cronobacter_phage	93.4	1.5e-79
WP_015386861.1|1984739_1984961_-	hypothetical protein	NA	NA	NA	NA	NA
WP_041461004.1|1985094_1985676_+	phage repressor protein CI	NA	F1BUS8	Erwinia_phage	41.9	1.9e-33
WP_015386863.1|1985676_1986717_+|integrase	tyrosine-type recombinase/integrase	integrase	A0A218M4I3	Erwinia_phage	60.5	2.2e-117
WP_007848577.1|1986883_1987018_+	manganase accumulation protein MntS	NA	NA	NA	NA	NA
WP_007848572.1|1987310_1988894_+	phosphoethanolamine transferase	NA	NA	NA	NA	NA
1988702:1988716	attR	AGCGCGGCGTTCAGC	NA	NA	NA	NA
WP_004388453.1|1988973_1989486_-	outer membrane protein OmpX	NA	A0A0P0ZE39	Stx2-converting_phage	36.6	3.0e-19
>prophage 1
NZ_CP027108	Cronobacter sakazakii strain CS-931 plasmid pCsaCS931a, complete sequence	51588	5271	44869	51588	integrase	Salmonella_phage(88.89%)	48	19424:19442	49536:49554
WP_029463968.1|5271_5745_-	hypothetical protein	NA	J9Q711	Salmonella_phage	94.3	7.8e-78
WP_165770212.1|5836_6187_-	hypothetical protein	NA	J9Q7R2	Salmonella_phage	79.8	5.1e-42
WP_175299786.1|7201_8761_+	DEAD/DEAH box helicase	NA	J9Q7I4	Salmonella_phage	95.2	1.7e-283
WP_080781206.1|8763_9042_+	hypothetical protein	NA	J9Q7T9	Salmonella_phage	90.1	6.0e-38
WP_175299787.1|9104_9353_+	hypothetical protein	NA	NA	NA	NA	NA
WP_175299788.1|9361_9643_+	hypothetical protein	NA	NA	NA	NA	NA
WP_133051723.1|9952_10363_+	hypothetical protein	NA	NA	NA	NA	NA
WP_029463952.1|10407_10761_+	hypothetical protein	NA	NA	NA	NA	NA
WP_029463951.1|10805_11336_+	transcriptional regulator	NA	J9Q6L0	Salmonella_phage	67.6	2.3e-54
WP_080322178.1|11643_12294_+	hypothetical protein	NA	J9Q754	Salmonella_phage	94.0	3.1e-109
WP_080817829.1|12948_13431_-	hypothetical protein	NA	J9Q805	Salmonella_phage	76.7	3.4e-65
WP_016051708.1|13636_13918_-	hypothetical protein	NA	J9Q753	Salmonella_phage	100.0	1.2e-49
WP_080953193.1|14045_14441_-	hypothetical protein	NA	J9Q7I1	Salmonella_phage	99.2	3.3e-66
WP_097573806.1|14568_14880_-	hypothetical protein	NA	J9Q7T7	Salmonella_phage	95.1	2.3e-46
WP_133115894.1|15060_15369_+	hypothetical protein	NA	NA	NA	NA	NA
WP_164708971.1|15416_15632_-	hypothetical protein	NA	J9Q804	Salmonella_phage	98.6	2.4e-34
WP_085047093.1|15645_15861_-	hypothetical protein	NA	J9Q6K7	Salmonella_phage	97.2	1.5e-33
WP_016051703.1|16006_16249_+	hypothetical protein	NA	J9Q751	Salmonella_phage	100.0	5.6e-40
WP_097573804.1|17660_18851_-	hypothetical protein	NA	J9Q803	Salmonella_phage	55.1	6.4e-121
19424:19442	attL	CTTAAACAAATTGTTTTCT	NA	NA	NA	NA
WP_080953198.1|19496_19763_-	hypothetical protein	NA	J9Q7T5	Salmonella_phage	75.0	9.5e-33
WP_080953199.1|20053_20458_-	DUF2251 domain-containing protein	NA	NA	NA	NA	NA
WP_080953200.1|20549_21035_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_175299789.1|21410_21980_-	hypothetical protein	NA	J9Q7H6	Salmonella_phage	60.8	5.3e-57
WP_080953202.1|22181_23147_+	restriction endonuclease	NA	NA	NA	NA	NA
WP_080953203.1|23156_23330_-	DUF3927 family protein	NA	H6WZJ7	Escherichia_phage	56.9	9.3e-05
WP_080953204.1|23329_23755_-	tellurite resistance TerB family protein	NA	Q71TK7	Escherichia_phage	80.1	1.3e-55
WP_085047083.1|23820_24009_-	hypothetical protein	NA	J9Q800	Salmonella_phage	66.1	7.4e-16
WP_158686347.1|24018_24495_-	hypothetical protein	NA	J9Q6J9	Salmonella_phage	61.6	3.0e-45
WP_097573802.1|24638_25235_-	ribonuclease HI	NA	J9Q745	Salmonella_phage	86.6	6.3e-101
WP_032970845.1|25820_26051_-	hypothetical protein	NA	J9Q7H5	Salmonella_phage	89.3	8.2e-33
WP_069682837.1|26250_26844_-	phage N-6-adenine-methyltransferase	NA	J9Q7T2	Salmonella_phage	92.4	1.9e-105
WP_133115893.1|27127_27763_+	hypothetical protein	NA	NA	NA	NA	NA
WP_097573798.1|28097_28901_-	hypothetical protein	NA	J9Q7Z9	Salmonella_phage	60.0	1.1e-79
WP_080321901.1|29224_30331_+	50S ribosome-binding GTPase	NA	NA	NA	NA	NA
WP_076734800.1|30365_30908_-	3'-5' exonuclease	NA	J9Q6J8	Salmonella_phage	88.8	2.9e-89
WP_075191848.1|30917_31337_-	hypothetical protein	NA	J9Q743	Salmonella_phage	86.3	3.4e-61
WP_080817851.1|31400_32045_-	AAA family ATPase	NA	J9Q7H4	Salmonella_phage	82.2	1.1e-98
WP_029590247.1|34750_35395_-	hypothetical protein	NA	J9Q739	Salmonella_phage	92.5	1.5e-116
WP_075183849.1|35717_36818_+	RepB family plasmid replication initiator protein	NA	J9Q7H0	Salmonella_phage	45.1	1.1e-74
WP_029463913.1|37368_37581_-	hypothetical protein	NA	J9Q7S8	Salmonella_phage	84.1	7.3e-28
WP_029590243.1|37580_37919_-	hypothetical protein	NA	J9Q7Z5	Salmonella_phage	78.0	5.8e-43
WP_029463912.1|38135_38411_-	hypothetical protein	NA	J9Q738	Salmonella_phage	78.0	5.4e-39
WP_032803458.1|38477_38897_-	hypothetical protein	NA	J9Q7G9	Salmonella_phage	83.7	1.5e-64
WP_105512499.1|39999_41712_-	porphyrin biosynthesis protein	NA	J9Q7G6	Salmonella_phage	85.7	4.8e-178
WP_097573796.1|41723_41915_-	hypothetical protein	NA	NA	NA	NA	NA
WP_069682814.1|42551_43655_-|integrase	site-specific integrase	integrase	A0A1P8DTG6	Proteus_phage	32.2	1.6e-25
WP_131824844.1|43921_44461_+	hypothetical protein	NA	NA	NA	NA	NA
WP_075183898.1|44623_44869_-	GrxA family glutaredoxin	NA	A0A2I7SAE2	Vibrio_phage	46.8	2.2e-12
49536:49554	attR	CTTAAACAAATTGTTTTCT	NA	NA	NA	NA
>prophage 1
NZ_CP049260	Cronobacter sakazakii strain CS-931 plasmid pCsaCS931b, complete sequence	119197	0	12064	119197	protease	Bacillus_phage(100.0%)	9	NA	NA
WP_076722230.1|1606_3271_+	ShlB/FhaC/HecB family hemolysin secretion/activation protein	NA	NA	NA	NA	NA
WP_032989735.1|4763_5702_+|protease	omptin family outer membrane protease	protease	NA	NA	NA	NA
WP_011998928.1|5950_6493_+	hypothetical protein	NA	NA	NA	NA	NA
WP_080818198.1|7061_7757_+	YafY family transcriptional regulator	NA	NA	NA	NA	NA
WP_038859171.1|7813_8197_+	drug:proton antiporter	NA	NA	NA	NA	NA
WP_076722061.1|8249_9140_-	transcriptional regulator	NA	NA	NA	NA	NA
WP_076722060.1|9301_10072_-	MipA/OmpV family protein	NA	NA	NA	NA	NA
WP_007854387.1|10196_10889_+	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	34.2	1.2e-26
WP_097573839.1|10885_12064_+	two-component sensor histidine kinase	NA	W8CYF6	Bacillus_phage	24.3	5.0e-17
>prophage 2
NZ_CP049260	Cronobacter sakazakii strain CS-931 plasmid pCsaCS931b, complete sequence	119197	19775	21083	119197		Burkholderia_virus(100.0%)	1	NA	NA
WP_007873133.1|19775_21083_+	MFS transporter	NA	Q6JIH2	Burkholderia_virus	37.0	4.6e-64
>prophage 3
NZ_CP049260	Cronobacter sakazakii strain CS-931 plasmid pCsaCS931b, complete sequence	119197	28017	38636	119197		Enterobacteria_phage(20.0%)	12	NA	NA
WP_007873161.1|28017_28761_+	MerR family transcriptional regulator	NA	Q9EYF2	Enterobacteria_phage	48.2	1.1e-46
WP_080818210.1|28839_30750_-	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	33.5	7.6e-15
WP_076722054.1|31182_31569_+	glyoxalase	NA	NA	NA	NA	NA
WP_080818217.1|31605_32121_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_076722053.1|32222_32546_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_080818218.1|32538_32937_+	amino acid-binding protein	NA	NA	NA	NA	NA
WP_038859156.1|32909_33635_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_007798787.1|33716_34538_+	alpha/beta hydrolase	NA	A0A220NRX7	Mycobacterium_phage	29.3	3.6e-14
WP_076722052.1|34584_35961_-	PTS transporter subunit EIIC	NA	NA	NA	NA	NA
WP_097573832.1|36240_37440_+	starvation-sensing protein RspA	NA	Q6A202	Oenococcus_phage	28.1	4.4e-37
WP_007854485.1|37427_38147_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_007780690.1|38342_38636_-	NINE protein	NA	M4ZS56	Bacillus_phage	68.8	3.6e-17
>prophage 4
NZ_CP049260	Cronobacter sakazakii strain CS-931 plasmid pCsaCS931b, complete sequence	119197	45729	51199	119197		uncultured_Caudovirales_phage(75.0%)	6	NA	NA
WP_076722205.1|45729_46143_-	arsenate reductase (glutaredoxin)	NA	A0A2H4J8T1	uncultured_Caudovirales_phage	70.7	1.1e-46
WP_080818224.1|46186_47470_-	arsenic transporter	NA	A0A2H4J144	uncultured_Caudovirales_phage	72.1	3.4e-168
WP_032989694.1|47557_47893_-	metalloregulator ArsR/SmtB family transcription factor	NA	A0A2H4J145	uncultured_Caudovirales_phage	61.9	1.6e-24
WP_080818226.1|47982_48870_-	dihydrodipicolinate synthase family protein	NA	NA	NA	NA	NA
WP_097573828.1|48894_49773_-	DMT family transporter	NA	NA	NA	NA	NA
WP_076722207.1|49864_51199_+	PLP-dependent aminotransferase family protein	NA	A0A1X9I5H2	Streptococcus_phage	21.1	2.0e-14
>prophage 5
NZ_CP049260	Cronobacter sakazakii strain CS-931 plasmid pCsaCS931b, complete sequence	119197	63319	64078	119197		Indivirus(100.0%)	1	NA	NA
WP_007896826.1|63319_64078_-	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	28.9	2.6e-14
>prophage 6
NZ_CP049260	Cronobacter sakazakii strain CS-931 plasmid pCsaCS931b, complete sequence	119197	68892	69867	119197	integrase	Gordonia_phage(100.0%)	1	63546:63559	78262:78275
63546:63559	attL	ATCAGGTGCATCTG	NA	NA	NA	NA
WP_097573865.1|68892_69867_+|integrase	tyrosine-type recombinase/integrase	integrase	A0A0K0N6I5	Gordonia_phage	37.9	1.1e-12
WP_097573865.1|68892_69867_+|integrase	tyrosine-type recombinase/integrase	integrase	A0A0K0N6I5	Gordonia_phage	37.9	1.1e-12
78262:78275	attR	CAGATGCACCTGAT	NA	NA	NA	NA
>prophage 7
NZ_CP049260	Cronobacter sakazakii strain CS-931 plasmid pCsaCS931b, complete sequence	119197	78012	79671	119197		uncultured_Caudovirales_phage(100.0%)	1	NA	NA
WP_029039502.1|78012_79671_-	MCP four helix bundle domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	45.9	1.1e-09
>prophage 8
NZ_CP049260	Cronobacter sakazakii strain CS-931 plasmid pCsaCS931b, complete sequence	119197	83947	85894	119197		uncultured_Caudovirales_phage(100.0%)	1	NA	NA
WP_007896778.1|83947_85894_-	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	30.3	1.1e-13
>prophage 9
NZ_CP049260	Cronobacter sakazakii strain CS-931 plasmid pCsaCS931b, complete sequence	119197	89061	91776	119197		Paramecium_bursaria_Chlorella_virus(100.0%)	1	NA	NA
WP_175299792.1|89061_91776_-	magnesium-translocating P-type ATPase	NA	M1HX51	Paramecium_bursaria_Chlorella_virus	23.7	3.2e-35
>prophage 10
NZ_CP049260	Cronobacter sakazakii strain CS-931 plasmid pCsaCS931b, complete sequence	119197	116128	118304	119197		Escherichia_phage(100.0%)	2	NA	NA
WP_029039471.1|116128_117097_-	ParB/RepB/Spo0J family partition protein	NA	Q38420	Escherichia_phage	56.9	1.4e-89
WP_032803578.1|117104_118304_-	AAA family ATPase	NA	A0A077SL49	Escherichia_phage	78.3	5.2e-179
