The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP031476	Listeria monocytogenes strain M13455 chromosome, complete genome	2950983	697637	704164	2950983	tail	Streptococcus_pyogenes_phage(33.33%)	10	NA	NA
WP_003734720.1|697637_698456_-|tail	phage tail family protein	tail	A0A060AFE1	Staphylococcus_phage	35.0	7.2e-39
WP_003731178.1|698452_700321_-	membrane protein	NA	A0A097PAU2	Streptococcus_pyogenes_phage	45.8	3.5e-20
WP_003740367.1|700307_700712_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003721745.1|700753_701056_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003721744.1|701103_701616_-|tail	phage major tail protein, TP901-1 family	tail	A0A097PBF4	Streptococcus_pyogenes_phage	62.7	1.2e-47
WP_003728212.1|701628_702018_-	DUF5072 domain-containing protein	NA	NA	NA	NA	NA
WP_003728213.1|702297_702714_-	hypothetical protein	NA	A8ASQ1	Listeria_phage	37.9	3.2e-19
WP_003724946.1|702725_703154_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003721740.1|703370_703706_+	helix-turn-helix transcriptional regulator	NA	A0A2H4JAR9	uncultured_Caudovirales_phage	52.5	4.0e-20
WP_003728215.1|703711_704164_+	ImmA/IrrE family metallo-endopeptidase	NA	A0A059T7S0	Listeria_phage	47.9	4.0e-31
>prophage 2
NZ_CP031476	Listeria monocytogenes strain M13455 chromosome, complete genome	2950983	1217109	1224954	2950983		Streptococcus_phage(50.0%)	7	NA	NA
WP_003722610.1|1217109_1218069_+	thioredoxin-disulfide reductase	NA	G3MA85	Bacillus_virus	53.7	2.0e-88
WP_003725411.1|1218188_1219172_+	UDP-glucose 4-epimerase GalE	NA	A0A2K9L5H6	Tupanvirus	38.1	4.0e-52
WP_003741152.1|1219188_1220250_+	galactose mutarotase	NA	NA	NA	NA	NA
WP_003734494.1|1220291_1222022_+	phospho-sugar mutase	NA	A0A1X9I671	Streptococcus_phage	53.3	5.6e-174
WP_003722606.1|1222129_1223005_+	RNase adapter RapZ	NA	A0A0R8VB27	Thermobifida_phage	29.7	1.9e-08
WP_003734495.1|1223006_1223975_+	YvcK family protein	NA	A1IMD5	Streptococcus_phage	43.6	1.8e-68
WP_003725407.1|1223982_1224954_+	DNA-binding protein WhiA	NA	Q7AWZ3	Streptococcus_phage	39.4	5.2e-52
>prophage 3
NZ_CP031476	Listeria monocytogenes strain M13455 chromosome, complete genome	2950983	1948608	1956894	2950983		Synechococcus_phage(33.33%)	8	NA	NA
WP_003726215.1|1948608_1949901_+	adenylosuccinate lyase	NA	A0A1B3B081	Gordonia_phage	33.0	2.5e-17
WP_003734637.1|1949981_1950695_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	A0A0E3F9V5	Synechococcus_phage	38.3	6.7e-41
WP_003722248.1|1950706_1950952_+	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
WP_003734638.1|1950955_1951639_+	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA	NA
WP_003731570.1|1951631_1953851_+	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	40.8	6.5e-159
WP_003722245.1|1953835_1955263_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	34.6	1.1e-53
WP_003726210.1|1955281_1956331_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	44.4	3.2e-63
WP_003726209.1|1956327_1956894_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	36.4	8.3e-26
>prophage 4
NZ_CP031476	Listeria monocytogenes strain M13455 chromosome, complete genome	2950983	2448095	2506695	2950983	protease,tRNA	Streptococcus_phage(16.67%)	57	NA	NA
WP_003734511.1|2448095_2449802_-|tRNA	proline--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003734512.1|2449842_2451105_-|protease	RIP metalloprotease RseP	protease	NA	NA	NA	NA
WP_003726414.1|2451118_2452261_-	1-deoxy-D-xylulose-5-phosphate reductoisomerase	NA	NA	NA	NA	NA
WP_003734513.1|2452275_2453064_-	phosphatidate cytidylyltransferase	NA	NA	NA	NA	NA
WP_003727497.1|2453077_2453836_-	isoprenyl transferase	NA	R9W0U9	Flavobacterium_phage	42.1	4.4e-22
WP_003723450.1|2454066_2454624_-	ribosome recycling factor	NA	NA	NA	NA	NA
WP_003723449.1|2454623_2455352_-	UMP kinase	NA	NA	NA	NA	NA
WP_003734514.1|2455644_2456019_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003744007.1|2455996_2457202_+	helicase SNF2	NA	L0P6E9	Lactobacillus_phage	46.6	4.1e-91
WP_003727499.1|2457191_2458496_+	DUF3440 domain-containing protein	NA	A0A220GKF8	Streptococcus_phage	52.1	1.2e-133
WP_003726669.1|2458505_2459012_+	ParB-like nuclease domain-containing protein	NA	A0A220GKT8	Streptococcus_phage	66.7	1.4e-56
WP_003726668.1|2459033_2459765_+	class I SAM-dependent methyltransferase	NA	A0A1X9I6N4	Streptococcus_phage	58.0	2.3e-81
WP_003726667.1|2459813_2460053_-	YneF family protein	NA	NA	NA	NA	NA
WP_003734516.1|2460273_2462268_-	transketolase	NA	NA	NA	NA	NA
WP_003734517.1|2462414_2462642_-	DUF896 domain-containing protein	NA	NA	NA	NA	NA
WP_003734518.1|2462735_2463065_-	cell division suppressor protein YneA	NA	NA	NA	NA	NA
WP_003723438.1|2463221_2463836_+	transcriptional repressor LexA	NA	A0A1B2APZ1	Phage_Wrath	62.1	9.3e-15
WP_003734519.1|2463866_2464391_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003726564.1|2464424_2465720_-	arsenic transporter	NA	A0A2H4PQU3	Staphylococcus_phage	62.6	2.5e-147
WP_003723435.1|2465863_2467198_-	type I glutamate--ammonia ligase	NA	A0A1V0SJ53	Klosneuvirus	26.4	2.0e-06
WP_003719570.1|2467268_2467637_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003727505.1|2467838_2469065_-	methionine gamma-lyase family protein	NA	NA	NA	NA	NA
WP_012681271.1|2469057_2470281_-	GTPase HflX	NA	NA	NA	NA	NA
WP_003719566.1|2470391_2470625_-	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_003726658.1|2470746_2471664_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_003723738.1|2471790_2473467_-	glycerol-3-phosphate dehydrogenase/oxidase	NA	NA	NA	NA	NA
WP_003726657.1|2473699_2474398_-	glycerophosphodiester phosphodiesterase	NA	A0A0S2MYI4	Enterococcus_phage	31.9	6.4e-12
WP_003734520.1|2474610_2476497_+	acetyltransferase	NA	B5WZU0	Pseudomonas_phage	32.2	2.9e-43
WP_003734521.1|2476529_2478350_-	class 1 internalin InlK	NA	NA	NA	NA	NA
WP_003726814.1|2478977_2479445_-	S-ribosylhomocysteine lyase	NA	NA	NA	NA	NA
WP_003734522.1|2479527_2481987_-	DNA topoisomerase IV subunit A	NA	G3M9Z5	Bacillus_virus	31.6	1.1e-101
WP_003727510.1|2481983_2483951_-	DNA topoisomerase IV subunit B	NA	G3M9Z3	Bacillus_virus	42.5	5.1e-123
WP_003727511.1|2484131_2484539_-	CoA-binding protein	NA	NA	NA	NA	NA
WP_003726698.1|2484697_2485294_+	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA	NA
WP_003726697.1|2485335_2486208_-	aldose 1-epimerase family protein	NA	NA	NA	NA	NA
WP_003724130.1|2486210_2486522_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003727513.1|2486544_2486964_-	acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003726695.1|2487066_2487846_-	GTP-sensing pleiotropic transcriptional regulator CodY	NA	NA	NA	NA	NA
WP_003727514.1|2487866_2489276_-|protease	ATP-dependent protease ATPase subunit HslU	protease	W6AS21	Erwinia_phage	27.8	7.5e-44
WP_003724001.1|2489289_2489829_-|protease	ATP-dependent protease subunit HslV	protease	NA	NA	NA	NA
WP_003731303.1|2489849_2490752_-	tyrosine recombinase XerC	NA	A0A142K7N4	Mycobacterium_phage	29.5	1.8e-14
WP_003727516.1|2491034_2492339_-|tRNA	FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO	tRNA	NA	NA	NA	NA
WP_003727517.1|2492401_2494480_-	type I DNA topoisomerase	NA	A0A1V0SB35	Catovirus	37.5	5.4e-107
WP_003727518.1|2494752_2495613_-	DNA-protecting protein DprA	NA	NA	NA	NA	NA
WP_003727519.1|2495746_2496532_-	ribonuclease HII	NA	G4YAY0	Emiliania_huxleyi_virus	37.6	6.7e-26
WP_003726396.1|2496528_2497392_-	ribosome biogenesis GTPase YlqF	NA	NA	NA	NA	NA
WP_003727520.1|2497401_2497944_-	type I signal peptidase SipZ	NA	NA	NA	NA	NA
WP_003726394.1|2498045_2498615_-	type I signal peptidase SipY	NA	NA	NA	NA	NA
WP_060555167.1|2498649_2499216_-	type I signal peptidase SipX	NA	NA	NA	NA	NA
WP_003723886.1|2499334_2500594_-|protease	ATP-dependent protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	63.2	1.4e-145
WP_003723884.1|2500778_2502062_-	trigger factor	NA	NA	NA	NA	NA
WP_060555168.1|2502176_2503115_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003731300.1|2503376_2504042_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003727523.1|2504057_2504591_-|protease	matrixin family metalloprotease	protease	NA	NA	NA	NA
WP_003727524.1|2504714_2504930_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003723563.1|2505080_2505476_+	helix-turn-helix transcriptional regulator	NA	A9D9J6	Lactobacillus_prophage	57.4	1.3e-14
WP_003734523.1|2505555_2506695_+|protease	PrsW family intramembrane metalloprotease	protease	NA	NA	NA	NA
