The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP012214	Campylobacter jejuni strain CJ088CC52 chromosome, complete genome	1605714	0	3466	1605714		Bacillus_virus(50.0%)	3	NA	NA
WP_053921057.1|260_2042_+	PhoX family phosphatase	NA	NA	NA	NA	NA
WP_002885293.1|2079_3018_-	thioredoxin-disulfide reductase	NA	G3MA85	Bacillus_virus	42.5	2.1e-58
WP_002778629.1|3151_3466_-	thioredoxin	NA	A0A1X9I9P5	Staphylococcus_phage	48.9	1.5e-21
>prophage 2
NZ_CP012214	Campylobacter jejuni strain CJ088CC52 chromosome, complete genome	1605714	8753	12671	1605714		Streptococcus_phage(50.0%)	7	NA	NA
WP_002869759.1|8753_9578_-	16S rRNA (cytidine(1402)-2'-O)-methyltransferase	NA	M1PLC5	Streptococcus_phage	35.3	1.3e-32
WP_002851603.1|9580_9781_-	50S ribosomal protein L31	NA	NA	NA	NA	NA
WP_002869760.1|9859_10516_-	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
WP_002885291.1|10517_10925_-	membrane protein	NA	NA	NA	NA	NA
WP_002867930.1|10924_11350_-	cytochrome c	NA	NA	NA	NA	NA
WP_002851757.1|11349_11931_-	6-carboxytetrahydropterin synthase	NA	NA	NA	NA	NA
WP_002851883.1|11927_12671_-	7-carboxy-7-deazaguanine synthase QueE	NA	M1PXL8	Cellulophaga_phage	34.4	1.3e-23
>prophage 3
NZ_CP012214	Campylobacter jejuni strain CJ088CC52 chromosome, complete genome	1605714	17829	21419	1605714		Bacillus_thuringiensis_phage(50.0%)	5	NA	NA
WP_002885854.1|17829_18492_+	superoxide dismutase [Fe]	NA	Q56AR7	Bacillus_thuringiensis_phage	34.0	3.3e-26
WP_002857297.1|18560_18779_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002870694.1|18888_19251_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002869054.1|19263_20469_-	saccharopine dehydrogenase family protein	NA	NA	NA	NA	NA
WP_079269907.1|20510_21419_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.0	2.7e-18
>prophage 4
NZ_CP012214	Campylobacter jejuni strain CJ088CC52 chromosome, complete genome	1605714	32126	34880	1605714		Staphylococcus_phage(33.33%)	4	NA	NA
WP_002851935.1|32126_33311_-	serine/threonine protein phosphatase	NA	Q4Z932	Staphylococcus_phage	32.0	1.4e-51
WP_002851709.1|33320_33530_-	alkylphosphonate utilization protein	NA	NA	NA	NA	NA
WP_002900759.1|33522_34242_-	TerC family protein	NA	A0A0R6PEZ3	Moraxella_phage	48.7	5.9e-45
WP_002900760.1|34313_34880_-	phosphoribosylglycinamide formyltransferase	NA	E3SNR5	Prochlorococcus_phage	41.0	6.3e-26
>prophage 5
NZ_CP012214	Campylobacter jejuni strain CJ088CC52 chromosome, complete genome	1605714	38426	46323	1605714		Synechococcus_phage(20.0%)	8	NA	NA
WP_002917788.1|38426_38954_-	peptide deformylase	NA	E3SLL2	Synechococcus_phage	43.0	9.4e-16
WP_002806309.1|38989_39574_-	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	NA	A0A223W000	Agrobacterium_phage	59.8	6.0e-56
WP_002851938.1|39573_40908_-	trigger factor	NA	NA	NA	NA	NA
WP_004307579.1|41051_41624_+	GTP cyclohydrolase I FolE	NA	A0A0P0HSD2	Acinetobacter_phage	57.3	4.1e-49
WP_002851735.1|41623_43009_+	flagellar protein export ATPase FliI	NA	NA	NA	NA	NA
WP_004307582.1|43011_44349_-	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	33.2	3.3e-57
WP_004307584.1|44350_45079_-	4-hydroxy-tetrahydrodipicolinate reductase	NA	NA	NA	NA	NA
WP_004307586.1|45141_46323_-	AAA family ATPase	NA	A0A127AWE7	Bacillus_phage	34.0	8.0e-47
>prophage 6
NZ_CP012214	Campylobacter jejuni strain CJ088CC52 chromosome, complete genome	1605714	53705	59711	1605714	protease,tRNA	Tupanvirus(25.0%)	4	NA	NA
WP_002882272.1|53705_55514_+|tRNA	threonine--tRNA ligase	tRNA	A0A2K9L6B6	Tupanvirus	36.5	2.0e-110
WP_002851726.1|55510_56029_+	translation initiation factor IF-3	NA	K4F6Y6	Cronobacter_phage	28.6	3.1e-11
WP_002869494.1|56067_57159_+	DNA adenine methylase	NA	E5ERN5	Ostreococcus_lucimarinus_virus	39.9	1.2e-60
WP_004307601.1|57527_59711_+|protease	serine protease	protease	Q9LA54	Enterobacteria_phage	24.3	3.3e-30
>prophage 7
NZ_CP012214	Campylobacter jejuni strain CJ088CC52 chromosome, complete genome	1605714	63166	75629	1605714		uncultured_Mediterranean_phage(28.57%)	14	NA	NA
WP_074485628.1|63166_64354_+	aspartate aminotransferase family protein	NA	A0A1V0SKB7	Klosneuvirus	31.7	3.0e-38
WP_002859395.1|64372_65002_-	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	36.5	6.8e-21
WP_002874478.1|65090_65639_+	gamma carbonic anhydrase family protein	NA	NA	NA	NA	NA
WP_079264876.1|65607_66981_-	nicotinate phosphoribosyltransferase	NA	G3MA18	Bacillus_virus	43.1	4.8e-96
WP_002892686.1|66967_67990_-	ribonucleotide-diphosphate reductase subunit beta	NA	A2PYN0	Cyanophage	33.7	2.2e-45
WP_002851998.1|68003_68414_-	RDD family protein	NA	NA	NA	NA	NA
WP_002857434.1|68414_69023_-	orotate phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_079254734.1|69025_69589_-	ribosome recycling factor	NA	NA	NA	NA	NA
WP_002854650.1|69598_69970_-	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
WP_002851668.1|70072_70768_-	Bax inhibitor-1/YccA family protein	NA	A0A2H4JFM9	uncultured_Caudovirales_phage	32.5	1.6e-15
WP_002859401.1|70928_71564_+	carbonic anhydrase	NA	NA	NA	NA	NA
WP_004307616.1|71560_73444_+	mechanosensitive ion channel family protein	NA	NA	NA	NA	NA
WP_004307618.1|73466_74438_-	iron-sulfur cluster assembly scaffold protein NifU	NA	A0A1B1IT19	uncultured_Mediterranean_phage	37.6	1.6e-13
WP_002859404.1|74447_75629_-	cysteine desulfurase, NifS family	NA	H7BUW1	unidentified_phage	37.1	2.1e-31
>prophage 8
NZ_CP012214	Campylobacter jejuni strain CJ088CC52 chromosome, complete genome	1605714	84704	85463	1605714		Cafeteria_roenbergensis_virus(100.0%)	1	NA	NA
WP_002867799.1|84704_85463_-	exodeoxyribonuclease III	NA	E3T4M6	Cafeteria_roenbergensis_virus	34.5	1.8e-31
>prophage 9
NZ_CP012214	Campylobacter jejuni strain CJ088CC52 chromosome, complete genome	1605714	96840	100596	1605714		uncultured_Mediterranean_phage(100.0%)	1	NA	NA
WP_002865702.1|96840_100596_+	type II restriction endonuclease	NA	A0A1B1IUC6	uncultured_Mediterranean_phage	25.3	5.9e-11
>prophage 10
NZ_CP012214	Campylobacter jejuni strain CJ088CC52 chromosome, complete genome	1605714	109225	111034	1605714		Tupanvirus(100.0%)	1	NA	NA
WP_002859745.1|109225_111034_-	translational GTPase TypA	NA	A0A2K9L2P9	Tupanvirus	37.1	7.0e-26
>prophage 11
NZ_CP012214	Campylobacter jejuni strain CJ088CC52 chromosome, complete genome	1605714	133169	134066	1605714		Citrobacter_phage(100.0%)	1	NA	NA
WP_002859758.1|133169_134066_+	signal peptide peptidase SppA	NA	A0A0A0RQ86	Citrobacter_phage	32.6	5.3e-19
>prophage 12
NZ_CP012214	Campylobacter jejuni strain CJ088CC52 chromosome, complete genome	1605714	141592	142390	1605714		Enterobacteria_phage(100.0%)	1	NA	NA
WP_002851847.1|141592_142390_-	cytolethal distending toxin nuclease subunit Cj-CdtB	NA	A5LH53	Enterobacteria_phage	55.2	2.1e-75
>prophage 13
NZ_CP012214	Campylobacter jejuni strain CJ088CC52 chromosome, complete genome	1605714	147234	147930	1605714		Sphenicid_alphaherpesvirus(100.0%)	1	NA	NA
WP_002859767.1|147234_147930_-	uracil-DNA glycosylase	NA	A0A1R3T3N6	Sphenicid_alphaherpesvirus	44.4	6.5e-49
>prophage 14
NZ_CP012214	Campylobacter jejuni strain CJ088CC52 chromosome, complete genome	1605714	158080	162067	1605714	tRNA	Streptococcus_phage(25.0%)	5	NA	NA
WP_002885346.1|158080_158836_+	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	40.5	2.1e-37
WP_002859775.1|158909_159827_+|tRNA	methionyl-tRNA formyltransferase	tRNA	M4QRX9	Synechococcus_phage	25.6	2.6e-05
WP_002859776.1|159789_160443_+	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_002851697.1|160439_161225_+	ParA family protein	NA	H7BUL8	unidentified_phage	32.5	8.8e-18
WP_002885348.1|161230_162067_+	ParB/RepB/Spo0J family partition protein	NA	S5VSZ7	Leptospira_phage	30.7	1.3e-14
>prophage 15
NZ_CP012214	Campylobacter jejuni strain CJ088CC52 chromosome, complete genome	1605714	174491	175253	1605714	tRNA	Escherichia_phage(100.0%)	1	NA	NA
WP_002885356.1|174491_175253_+|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	32.5	4.1e-28
>prophage 16
NZ_CP012214	Campylobacter jejuni strain CJ088CC52 chromosome, complete genome	1605714	188978	191594	1605714		Cafeteria_roenbergensis_virus(100.0%)	1	NA	NA
WP_002882997.1|188978_191594_+	translation initiation factor IF-2	NA	E3T4N3	Cafeteria_roenbergensis_virus	28.1	3.7e-28
>prophage 17
NZ_CP012214	Campylobacter jejuni strain CJ088CC52 chromosome, complete genome	1605714	196853	197708	1605714		Planktothrix_phage(100.0%)	1	NA	NA
WP_002854487.1|196853_197708_-	metal ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	34.8	1.9e-13
>prophage 18
NZ_CP012214	Campylobacter jejuni strain CJ088CC52 chromosome, complete genome	1605714	202367	203456	1605714		Acanthamoeba_polyphaga_moumouvirus(100.0%)	1	NA	NA
WP_002874129.1|202367_203456_-	membrane protein	NA	L7RCW8	Acanthamoeba_polyphaga_moumouvirus	23.0	9.1e-05
>prophage 19
NZ_CP012214	Campylobacter jejuni strain CJ088CC52 chromosome, complete genome	1605714	207597	208851	1605714	protease	Bacillus_virus(100.0%)	1	NA	NA
WP_079264882.1|207597_208851_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	54.0	2.7e-117
>prophage 20
NZ_CP012214	Campylobacter jejuni strain CJ088CC52 chromosome, complete genome	1605714	216190	219986	1605714		Bacillus_thuringiensis_phage(100.0%)	3	NA	NA
WP_002826355.1|216190_216712_-	purine-binding chemotaxis protein CheW	NA	Q56AR1	Bacillus_thuringiensis_phage	24.8	1.9e-05
WP_002859840.1|216716_219026_-	hybrid sensor histidine kinase/response regulator	NA	Q56AR1	Bacillus_thuringiensis_phage	26.0	1.3e-13
WP_002851778.1|219029_219986_-	chemotaxis protein CheV	NA	Q56AR1	Bacillus_thuringiensis_phage	31.2	4.5e-40
>prophage 21
NZ_CP012214	Campylobacter jejuni strain CJ088CC52 chromosome, complete genome	1605714	224876	237864	1605714	tRNA	uncultured_Mediterranean_phage(12.5%)	16	NA	NA
WP_002884598.1|224876_225653_+	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	33.7	1.7e-34
WP_079263976.1|225642_226296_+|tRNA	tRNA cyclic N6-threonylcarbamoyladenosine(37) synthase TcdA	tRNA	S4VW33	Pandoravirus	28.2	2.3e-11
WP_002854245.1|226370_226751_-	aspartate 1-decarboxylase	NA	NA	NA	NA	NA
WP_002884594.1|226747_227596_-	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
WP_002854572.1|227606_228431_-	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	40.2	4.8e-51
WP_053921012.1|228647_229409_+	OXA-61 family class D beta-lactamase OXA-603	NA	NA	NA	NA	NA
WP_052777735.1|229507_230392_-	sulfate/molybdate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.6	7.8e-23
WP_002778136.1|230401_231070_-	molybdate ABC transporter permease subunit	NA	Q6GZ02	Mycoplasma_phage	31.4	4.3e-05
WP_002885464.1|231062_231464_-	TOBE domain-containing protein	NA	NA	NA	NA	NA
WP_002885462.1|231460_232210_-	molybdate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_002778141.1|232263_232950_-	malonyl-ACP O-methyltransferase BioC	NA	NA	NA	NA	NA
WP_002778143.1|232946_233558_-	DUF452 family protein	NA	NA	NA	NA	NA
WP_002873470.1|233554_234697_-	pyridoxal phosphate-dependent aminotransferase family protein	NA	V5LQ39	Emiliania_huxleyi_virus	26.2	2.1e-28
WP_002873471.1|234764_236048_+	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	NA	NA	NA	NA
WP_002794062.1|236087_236705_+	hypothetical protein	NA	E3SSZ8	Prochlorococcus_phage	37.6	5.6e-28
WP_002794060.1|236661_237864_+	class I SAM-dependent methyltransferase	NA	A0A1V0SF64	Hokovirus	32.3	3.9e-41
>prophage 22
NZ_CP012214	Campylobacter jejuni strain CJ088CC52 chromosome, complete genome	1605714	241386	245509	1605714		Bovine_gammaherpesvirus(50.0%)	4	NA	NA
WP_002867747.1|241386_242595_+	diaminopimelate decarboxylase	NA	A0A060D2X4	Bovine_gammaherpesvirus	27.7	1.1e-22
WP_002785344.1|242596_243364_+	HAD-IIA family hydrolase	NA	NA	NA	NA	NA
WP_002867749.1|243351_244425_+	prephenate dehydratase	NA	NA	NA	NA	NA
WP_002867750.1|244414_245509_+	histidinol-phosphate transaminase	NA	A0A0H3TLT9	Faustovirus	26.1	9.7e-15
>prophage 23
NZ_CP012214	Campylobacter jejuni strain CJ088CC52 chromosome, complete genome	1605714	253393	258883	1605714		Klosneuvirus(33.33%)	8	NA	NA
WP_002859429.1|253393_254557_+	exodeoxyribonuclease VII large subunit	NA	A0A1V0SIT1	Klosneuvirus	32.2	5.3e-43
WP_002868752.1|254566_255643_+	phosphoserine transaminase	NA	M1Q1P2	Streptococcus_phage	39.8	1.5e-71
WP_002868753.1|255639_255990_+	RidA family protein	NA	NA	NA	NA	NA
WP_002858639.1|255986_256961_-	ketoacyl-ACP synthase III	NA	NA	NA	NA	NA
WP_002868169.1|256953_257940_-	phosphate acyltransferase PlsX	NA	NA	NA	NA	NA
WP_002858674.1|257945_258092_-	50S ribosomal protein L32	NA	NA	NA	NA	NA
WP_002859434.1|258115_258469_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002859435.1|258469_258883_-	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	42.6	2.6e-21
>prophage 24
NZ_CP012214	Campylobacter jejuni strain CJ088CC52 chromosome, complete genome	1605714	262832	275347	1605714		uncultured_virus(25.0%)	9	NA	NA
WP_002859439.1|262832_265472_-	DNA polymerase I	NA	A0A218MKQ4	uncultured_virus	29.4	1.1e-64
WP_002875281.1|265633_266995_+	MHS family MFS transporter	NA	Q6JIH2	Burkholderia_virus	31.1	6.0e-38
WP_002868914.1|266991_267999_+	nucleoside hydrolase	NA	NA	NA	NA	NA
WP_002859441.1|267954_268398_-	DedA family protein	NA	NA	NA	NA	NA
WP_002859442.1|268402_271228_-	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	49.8	6.6e-249
WP_002858695.1|271300_272086_-	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
WP_002854718.1|272208_272334_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002858746.1|272498_273749_+	anthranilate synthase component I family protein	NA	NA	NA	NA	NA
WP_002868916.1|273745_275347_+	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	32.7	4.9e-39
>prophage 25
NZ_CP012214	Campylobacter jejuni strain CJ088CC52 chromosome, complete genome	1605714	289694	292817	1605714		Leptospira_phage(100.0%)	1	NA	NA
WP_002859457.1|289694_292817_-	multidrug efflux RND transporter permease subunit CmeB	NA	S5VTK5	Leptospira_phage	22.8	2.6e-65
>prophage 26
NZ_CP012214	Campylobacter jejuni strain CJ088CC52 chromosome, complete genome	1605714	297116	302738	1605714		Ralstonia_phage(33.33%)	6	NA	NA
WP_053920992.1|297116_298286_+	glutathionylspermidine synthase family protein	NA	B2ZXR7	Ralstonia_phage	34.6	1.3e-41
WP_002854730.1|298289_299225_+	D-2-hydroxyacid dehydrogenase	NA	M1NSB9	Streptococcus_phage	27.5	3.3e-19
WP_002854188.1|299214_299706_+	YajQ family cyclic di-GMP-binding protein	NA	NA	NA	NA	NA
WP_002854442.1|299714_300191_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002869746.1|300201_301026_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002854291.1|301025_302738_+	ATP-binding protein	NA	A0A0R6PCP6	Moraxella_phage	30.8	8.3e-21
>prophage 27
NZ_CP012214	Campylobacter jejuni strain CJ088CC52 chromosome, complete genome	1605714	306239	307516	1605714		Staphylococcus_phage(50.0%)	2	NA	NA
WP_002854278.1|306239_306704_-	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	45.3	2.7e-30
WP_002854449.1|306700_307516_-	3-deoxy-8-phosphooctulonate synthase	NA	E3T537	Cafeteria_roenbergensis_virus	42.1	8.5e-48
>prophage 28
NZ_CP012214	Campylobacter jejuni strain CJ088CC52 chromosome, complete genome	1605714	311378	312614	1605714	tRNA	uncultured_Mediterranean_phage(100.0%)	1	NA	NA
WP_052777729.1|311378_312614_+|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	50.0	1.1e-86
>prophage 29
NZ_CP012214	Campylobacter jejuni strain CJ088CC52 chromosome, complete genome	1605714	322793	325540	1605714	tRNA	Catovirus(50.0%)	2	NA	NA
WP_002869930.1|322793_324299_+|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	37.0	4.8e-89
WP_002860267.1|324295_325540_+	serine hydroxymethyltransferase	NA	A0A219YB23	Aeromonas_phage	51.7	4.1e-102
>prophage 30
NZ_CP012214	Campylobacter jejuni strain CJ088CC52 chromosome, complete genome	1605714	330429	332421	1605714		Paramecium_bursaria_Chlorella_virus(100.0%)	1	NA	NA
WP_002885525.1|330429_332421_+	fumarate reductase flavoprotein subunit	NA	M1HTN0	Paramecium_bursaria_Chlorella_virus	25.9	3.2e-16
>prophage 31
NZ_CP012214	Campylobacter jejuni strain CJ088CC52 chromosome, complete genome	1605714	346187	349178	1605714		Tupanvirus(50.0%)	4	NA	NA
WP_002885554.1|346187_347765_+	ABC-F family ATP-binding cassette domain-containing protein	NA	A0A2K9L3Z8	Tupanvirus	27.2	2.9e-52
WP_002859498.1|347754_348090_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002860258.1|348166_348550_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002875084.1|348593_349178_-	YigZ family protein	NA	A0A1X9I5T8	Streptococcus_phage	36.1	4.2e-17
>prophage 32
NZ_CP012214	Campylobacter jejuni strain CJ088CC52 chromosome, complete genome	1605714	355610	356354	1605714		Chrysochromulina_ericina_virus(100.0%)	1	NA	NA
WP_002859879.1|355610_356354_+	3-oxoacyl-ACP reductase FabG	NA	A0A0N9R355	Chrysochromulina_ericina_virus	25.8	1.5e-11
>prophage 33
NZ_CP012214	Campylobacter jejuni strain CJ088CC52 chromosome, complete genome	1605714	366896	370152	1605714		uncultured_Caudovirales_phage(50.0%)	5	NA	NA
WP_002858516.1|366896_367994_-	chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	43.6	5.3e-13
WP_002855201.1|368003_368219_-	YdcH family protein	NA	NA	NA	NA	NA
WP_002854974.1|368403_368598_-	50S ribosomal protein L28	NA	NA	NA	NA	NA
WP_002859889.1|368737_369385_+	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_002867619.1|369381_370152_+	3'-5' exonuclease	NA	A0A1X9I5C8	Streptococcus_phage	34.6	2.6e-14
>prophage 34
NZ_CP012214	Campylobacter jejuni strain CJ088CC52 chromosome, complete genome	1605714	378249	380516	1605714		Mamastrovirus(50.0%)	2	NA	NA
WP_002884838.1|378249_379296_+	dehypoxanthine futalosine cyclase	NA	A9ZMK9	Mamastrovirus	47.6	9.9e-25
WP_002872881.1|379295_380516_+	insulinase family protein	NA	G3MBJ8	Bacillus_virus	20.3	6.0e-05
>prophage 35
NZ_CP012214	Campylobacter jejuni strain CJ088CC52 chromosome, complete genome	1605714	384767	387360	1605714		Planktothrix_phage(50.0%)	2	NA	NA
WP_002867606.1|384767_385505_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	40.2	1.3e-34
WP_002855271.1|386160_387360_+	elongation factor Tu	NA	A0A076FFS6	Aureococcus_anophage	27.6	2.3e-33
>prophage 36
NZ_CP012214	Campylobacter jejuni strain CJ088CC52 chromosome, complete genome	1605714	390744	399427	1605714		Organic_Lake_phycodnavirus(50.0%)	2	NA	NA
WP_002859036.1|390744_394881_+	DNA-directed RNA polymerase subunit beta	NA	F2Y186	Organic_Lake_phycodnavirus	30.6	2.7e-25
WP_002884848.1|394873_399427_+	DNA-directed RNA polymerase subunit beta'	NA	A0A2I7QNZ7	Vibrio_phage	26.2	4.4e-69
>prophage 37
NZ_CP012214	Campylobacter jejuni strain CJ088CC52 chromosome, complete genome	1605714	409932	415374	1605714	tRNA	Streptococcus_phage(50.0%)	6	NA	NA
WP_002797112.1|409932_412008_+	elongation factor G	NA	E4ZFJ7	Streptococcus_phage	26.9	3.9e-65
WP_002854981.1|412130_412280_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002854777.1|412285_412987_+|tRNA	tRNA1(Val) (adenine(37)-N6)-methyltransferase	tRNA	NA	NA	NA	NA
WP_002855009.1|412976_413351_+	YkgJ family cysteine cluster protein	NA	NA	NA	NA	NA
WP_002855132.1|413323_414601_+	lipoprotein	NA	NA	NA	NA	NA
WP_002854779.1|414597_415374_+	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	37.6	2.0e-38
>prophage 38
NZ_CP012214	Campylobacter jejuni strain CJ088CC52 chromosome, complete genome	1605714	420217	436619	1605714	tRNA	Tupanvirus(28.57%)	14	NA	NA
WP_002867665.1|420217_421291_-	DegT/DnrJ/EryC1/StrS aminotransferase family protein	NA	A0A2K9L0G1	Tupanvirus	31.3	5.2e-37
WP_002859051.1|421405_423934_+|tRNA	alanine--tRNA ligase	tRNA	A0A2K9L1X7	Tupanvirus	38.1	3.8e-78
WP_002855005.1|423933_424485_+	septum formation inhibitor Maf	NA	NA	NA	NA	NA
WP_002885707.1|424481_426413_+	penicillin-binding protein 1A	NA	NA	NA	NA	NA
WP_032590777.1|426440_429014_-	AAA domain-containing protein	NA	K4FB40	Cronobacter_phage	34.4	4.6e-116
WP_002884545.1|429125_429416_-	metal-sensing transcriptional repressor	NA	NA	NA	NA	NA
WP_002884543.1|429542_430877_+	S41 family peptidase	NA	A0A0R6PIZ1	Moraxella_phage	28.0	1.7e-21
WP_002854922.1|430878_431589_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	A0A127KMU1	Cyanophage	40.9	5.7e-40
WP_002884541.1|431597_431843_+	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
WP_002867670.1|431844_432492_+	phosphoribosylformylglycinamidine synthase I	NA	NA	NA	NA	NA
WP_002884539.1|432488_433685_+	SH3 domain-containing protein	NA	NA	NA	NA	NA
WP_002867672.1|433665_434358_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_002859058.1|434351_434720_+	fluoride efflux transporter CrcB	NA	A0A2H4J148	uncultured_Caudovirales_phage	41.0	6.8e-05
WP_002866408.1|434792_436619_+	molecular chaperone HtpG	NA	A0A1B1ISV4	uncultured_Mediterranean_phage	32.0	8.7e-85
>prophage 39
NZ_CP012214	Campylobacter jejuni strain CJ088CC52 chromosome, complete genome	1605714	448976	450140	1605714		Tupanvirus(100.0%)	1	NA	NA
WP_002884522.1|448976_450140_+	ADP-forming succinate--CoA ligase subunit beta	NA	A0A2K9L5E9	Tupanvirus	24.6	8.8e-06
>prophage 40
NZ_CP012214	Campylobacter jejuni strain CJ088CC52 chromosome, complete genome	1605714	457007	458717	1605714	tRNA	Orpheovirus(100.0%)	1	NA	NA
WP_079742437.1|457007_458717_+|tRNA	proline--tRNA ligase	tRNA	A0A2I2L3K8	Orpheovirus	24.1	5.2e-07
>prophage 41
NZ_CP012214	Campylobacter jejuni strain CJ088CC52 chromosome, complete genome	1605714	472035	478290	1605714		Streptococcus_phage(33.33%)	5	NA	NA
WP_002884502.1|472035_473268_-	glutamate-5-semialdehyde dehydrogenase	NA	A0A1X9I5D4	Streptococcus_phage	40.6	4.1e-78
WP_052777689.1|473338_474274_+	NAD(P)-binding domain-containing protein	NA	A0A2K9L162	Tupanvirus	27.7	1.6e-05
WP_002859084.1|474454_475783_+	MATE family efflux transporter	NA	NA	NA	NA	NA
WP_002859085.1|475830_476760_-	DUF2860 domain-containing protein	NA	NA	NA	NA	NA
WP_002859086.1|476913_478290_+	replicative DNA helicase	NA	A0A077SK18	Escherichia_phage	36.2	5.6e-68
>prophage 42
NZ_CP012214	Campylobacter jejuni strain CJ088CC52 chromosome, complete genome	1605714	485167	491530	1605714	tRNA	Staphylococcus_phage(25.0%)	7	NA	NA
WP_002852104.1|485167_486187_+	bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II	NA	A0A2H4PQS2	Staphylococcus_phage	36.7	1.2e-59
WP_002852081.1|486198_486642_+	GatB/YqeY domain-containing protein	NA	A0A292GL36	Xanthomonas_phage	34.0	7.7e-11
WP_002852093.1|486659_488360_+	acetolactate synthase large subunit	NA	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	28.9	2.2e-53
WP_002852211.1|488356_488821_+	acetolactate synthase small subunit	NA	NA	NA	NA	NA
WP_002852180.1|488817_489783_+	UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase	NA	NA	NA	NA	NA
WP_002884491.1|489771_490800_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_002856930.1|490792_491530_-	twin-arginine translocase subunit TatC	NA	A0A1B1IVR7	uncultured_Mediterranean_phage	32.9	1.0e-28
>prophage 43
NZ_CP012214	Campylobacter jejuni strain CJ088CC52 chromosome, complete genome	1605714	497125	504945	1605714		Pseudomonas_phage(25.0%)	10	NA	NA
WP_052777683.1|497125_499069_+	NAD-dependent DNA ligase LigA	NA	A0A1Y0SVC9	Pseudomonas_phage	32.5	4.2e-85
WP_079462649.1|499049_500054_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002854799.1|500050_500812_+	TlyA family RNA methyltransferase	NA	NA	NA	NA	NA
WP_052777681.1|500777_501632_+	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA	NA
WP_002859101.1|501618_502329_+	carboxy-S-adenosyl-L-methionine synthase CmoA	NA	A0A0N9SHZ9	Staphylococcus_phage	31.7	1.5e-24
WP_002859102.1|502318_502540_-	EexN family lipoprotein	NA	NA	NA	NA	NA
WP_002884104.1|502536_502971_-	EexN family lipoprotein	NA	NA	NA	NA	NA
WP_002852232.1|503028_503661_-	trimeric intracellular cation channel family protein	NA	NA	NA	NA	NA
WP_002852117.1|503671_504322_-	DNA/RNA non-specific endonuclease	NA	X2KR27	Campylobacter_phage	65.9	2.6e-76
WP_002852225.1|504318_504945_-	endonuclease III	NA	G3CB03	Aeropyrum_pernix_spindle-shaped_virus	28.5	7.7e-17
>prophage 44
NZ_CP012214	Campylobacter jejuni strain CJ088CC52 chromosome, complete genome	1605714	517438	519364	1605714		Planktothrix_phage(100.0%)	1	NA	NA
WP_002852201.1|517438_519364_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	40.7	2.6e-31
>prophage 45
NZ_CP012214	Campylobacter jejuni strain CJ088CC52 chromosome, complete genome	1605714	522914	528769	1605714		Pseudomonas_phage(33.33%)	6	NA	NA
WP_002858515.1|522914_524291_-	MBOAT family protein	NA	A0A125RNP0	Pseudomonas_phage	35.1	4.8e-43
WP_002852256.1|524333_524837_-	non-heme ferritin	NA	NA	NA	NA	NA
WP_002859112.1|525027_526023_+	phosphate-binding protein	NA	A0A1B1IWY0	uncultured_Mediterranean_phage	43.1	3.0e-63
WP_002776292.1|526032_526947_+	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
WP_002885789.1|526943_528032_+	phosphate ABC transporter permease PstA	NA	NA	NA	NA	NA
WP_002776307.1|528028_528769_+	phosphate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.4	5.4e-17
>prophage 46
NZ_CP012214	Campylobacter jejuni strain CJ088CC52 chromosome, complete genome	1605714	544301	546236	1605714		Lactococcus_phage(100.0%)	1	NA	NA
WP_002884143.1|544301_546236_-	VacB/RNase II family 3'-5' exoribonuclease	NA	Q0GXV6	Lactococcus_phage	29.7	2.2e-38
>prophage 47
NZ_CP012214	Campylobacter jejuni strain CJ088CC52 chromosome, complete genome	1605714	551189	554044	1605714	tRNA	uncultured_Caudovirales_phage(50.0%)	3	NA	NA
WP_002867724.1|551189_551708_-	inorganic diphosphatase	NA	A0A2H4J8U1	uncultured_Caudovirales_phage	50.0	1.0e-38
WP_002859580.1|551717_552296_-	adenylate kinase	NA	NA	NA	NA	NA
WP_002875506.1|552292_554044_-|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	24.6	1.8e-10
>prophage 48
NZ_CP012214	Campylobacter jejuni strain CJ088CC52 chromosome, complete genome	1605714	558673	561073	1605714		Pasteurella_phage(33.33%)	3	NA	NA
WP_115768218.1|558673_559792_+	lytic transglycosylase domain-containing protein	NA	A0A218M4G6	Pasteurella_phage	34.1	2.1e-09
WP_002852227.1|559751_560579_+	septal ring lytic transglycosylase RlpA family protein	NA	F5B3X9	Synechococcus_phage	50.0	5.6e-23
WP_002872380.1|560584_561073_+	HAD-IIIA family hydrolase	NA	A0A140XBD6	Dickeya_phage	41.2	2.5e-15
>prophage 49
NZ_CP012214	Campylobacter jejuni strain CJ088CC52 chromosome, complete genome	1605714	565032	569012	1605714		Acinetobacter_phage(100.0%)	3	NA	NA
WP_002884147.1|565032_566823_-	aminopeptidase P family protein	NA	A0A0P0I8D7	Acinetobacter_phage	47.6	2.1e-160
WP_002867729.1|566838_568392_-	peptide MFS transporter	NA	A0A0P0IY73	Acinetobacter_phage	47.7	2.4e-128
WP_032582494.1|568589_569012_-	hypothetical protein	NA	A0A0P0IY73	Acinetobacter_phage	50.8	1.3e-28
>prophage 50
NZ_CP012214	Campylobacter jejuni strain CJ088CC52 chromosome, complete genome	1605714	572711	574031	1605714	protease	Erwinia_phage(100.0%)	1	NA	NA
WP_002875198.1|572711_574031_-|protease	ATP-dependent protease ATPase subunit HslU	protease	A0A191ZC11	Erwinia_phage	28.2	4.0e-39
>prophage 51
NZ_CP012214	Campylobacter jejuni strain CJ088CC52 chromosome, complete genome	1605714	577042	577771	1605714		Staphylococcus_phage(100.0%)	1	NA	NA
WP_002855252.1|577042_577771_+	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	31.8	1.4e-25
>prophage 52
NZ_CP012214	Campylobacter jejuni strain CJ088CC52 chromosome, complete genome	1605714	598266	602019	1605714		uncultured_Mediterranean_phage(100.0%)	1	NA	NA
WP_002884654.1|598266_602019_-	restriction endonuclease	NA	A0A1B1IUC6	uncultured_Mediterranean_phage	24.1	1.6e-45
>prophage 53
NZ_CP012214	Campylobacter jejuni strain CJ088CC52 chromosome, complete genome	1605714	612866	614120	1605714		Phage_TP(100.0%)	1	NA	NA
WP_002852318.1|612866_614120_+	U32 family peptidase	NA	Q6DW11	Phage_TP	31.1	1.4e-38
>prophage 54
NZ_CP012214	Campylobacter jejuni strain CJ088CC52 chromosome, complete genome	1605714	618608	619361	1605714		Bodo_saltans_virus(100.0%)	1	NA	NA
WP_002876293.1|618608_619361_+	RluA family pseudouridine synthase	NA	A0A2H4UV25	Bodo_saltans_virus	31.8	3.7e-05
>prophage 55
NZ_CP012214	Campylobacter jejuni strain CJ088CC52 chromosome, complete genome	1605714	625588	629191	1605714		Streptomyces_phage(100.0%)	1	NA	NA
WP_052825549.1|625588_629191_+	DNA polymerase III subunit alpha	NA	A0A0K1Y9G6	Streptomyces_phage	37.5	2.0e-197
>prophage 56
NZ_CP012214	Campylobacter jejuni strain CJ088CC52 chromosome, complete genome	1605714	639920	640910	1605714		Bacillus_virus(100.0%)	1	NA	NA
WP_002776579.1|639920_640910_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	39.9	2.9e-34
>prophage 57
NZ_CP012214	Campylobacter jejuni strain CJ088CC52 chromosome, complete genome	1605714	651694	658954	1605714	transposase	Helicobacter_phage(33.33%)	6	NA	NA
WP_002874194.1|651694_652240_+|transposase	IS200/IS605 family element transposase accessory protein TnpB	transposase	A0A1S5RHD5	Helicobacter_phage	62.1	5.3e-54
WP_002859789.1|652340_653024_-	energy transducer TonB	NA	NA	NA	NA	NA
WP_002874193.1|653347_655438_+	TonB-dependent ferric enterobactin receptor CfrA	NA	A0A0P0I887	Acinetobacter_phage	27.8	2.9e-07
WP_079263663.1|655738_656533_+	HrcA family transcriptional regulator	NA	NA	NA	NA	NA
WP_002874191.1|656529_657060_+	nucleotide exchange factor GrpE	NA	NA	NA	NA	NA
WP_002826316.1|657082_658954_+	molecular chaperone DnaK	NA	A0A167RF67	Powai_lake_megavirus	47.1	1.8e-149
>prophage 58
NZ_CP012214	Campylobacter jejuni strain CJ088CC52 chromosome, complete genome	1605714	664519	666788	1605714	tRNA	Hokovirus(33.33%)	3	NA	NA
WP_002885130.1|664519_665746_-|tRNA	histidine--tRNA ligase	tRNA	A0A1V0SFH3	Hokovirus	25.5	1.4e-22
WP_002852526.1|665742_666321_-	dTMP kinase	NA	A0A1L2BX49	Bacteriophage	33.7	2.0e-11
WP_002852633.1|666311_666788_-	pantetheine-phosphate adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	39.5	5.5e-23
>prophage 59
NZ_CP012214	Campylobacter jejuni strain CJ088CC52 chromosome, complete genome	1605714	671608	678436	1605714	tRNA	Planktothrix_phage(33.33%)	4	NA	NA
WP_052777768.1|671608_672619_-	methionine ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	38.7	9.5e-33
WP_002885164.1|672622_675235_-|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	41.6	5.0e-150
WP_002885166.1|675257_676277_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002885168.1|676405_678436_+	ATP-dependent helicase	NA	A7KV33	Bacillus_phage	27.9	2.6e-45
>prophage 60
NZ_CP012214	Campylobacter jejuni strain CJ088CC52 chromosome, complete genome	1605714	687138	690349	1605714	tRNA	Vibrio_phage(33.33%)	3	NA	NA
WP_053921013.1|687138_688257_+|tRNA	CCA tRNA nucleotidyltransferase	tRNA	A0A0U4J6Z1	Vibrio_phage	34.6	3.0e-19
WP_002885176.1|688253_689078_+	formyltetrahydrofolate deformylase	NA	M4QRX9	Synechococcus_phage	36.7	2.8e-14
WP_021137666.1|689074_690349_-	aminotransferase class V-fold PLP-dependent enzyme	NA	A0A1C9C5E2	Heterosigma_akashiwo_virus	31.0	3.6e-37
>prophage 61
NZ_CP012214	Campylobacter jejuni strain CJ088CC52 chromosome, complete genome	1605714	701133	710030	1605714	tRNA	Terra1_virus(20.0%)	9	NA	NA
WP_002884909.1|701133_702522_+|tRNA	cysteine--tRNA ligase	tRNA	F1C979	Terra1_virus	30.8	2.7e-46
WP_002858782.1|702514_704257_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	29.5	9.6e-57
WP_002884914.1|704288_705347_+	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA	NA
WP_002884915.1|705343_706594_+	insulinase family protein	NA	A0A2P1EIE5	Megavirus	25.0	6.1e-29
WP_002884920.1|706586_707483_+	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA	NA
WP_002884922.1|707482_708262_+	enoyl-ACP reductase	NA	F2NZ40	Diadromus_pulchellus_ascovirus	25.3	2.0e-06
WP_002884923.1|708302_708608_-	hypothetical protein	NA	NA	NA	NA	NA
WP_057034933.1|708619_709216_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_002857155.1|709289_710030_+	NAD+ synthase	NA	A0A0K0KVL1	Prochlorococcus_phage	32.6	2.6e-19
>prophage 62
NZ_CP012214	Campylobacter jejuni strain CJ088CC52 chromosome, complete genome	1605714	716204	725667	1605714	tRNA	Chrysochromulina_ericina_virus(20.0%)	11	NA	NA
WP_002885094.1|716204_717494_+	bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU	NA	A0A0N7G7P8	Chrysochromulina_ericina_virus	35.6	6.7e-31
WP_002885091.1|717490_718645_+	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9J5A8	Fowlpox_virus	33.0	2.5e-13
WP_002885089.1|718641_719259_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002852565.1|719262_719931_+	di-trans,poly-cis-decaprenylcistransferase	NA	R9W0U9	Flavobacterium_phage	37.2	3.5e-15
WP_057036785.1|719927_720704_+	prepilin peptidase	NA	NA	NA	NA	NA
WP_002856798.1|720703_721729_+	LptF/LptG family permease	NA	NA	NA	NA	NA
WP_002852636.1|721725_722451_+|tRNA	tRNA pseudouridine(38-40) synthase TruA	tRNA	NA	NA	NA	NA
WP_002885084.1|722447_723659_-	threonine ammonia-lyase	NA	A0A1W6JHY1	Lactococcus_phage	27.9	2.3e-09
WP_044258829.1|723658_724072_-	CoA-binding protein	NA	NA	NA	NA	NA
WP_002856751.1|724190_724607_+	membrane protein	NA	NA	NA	NA	NA
WP_002874176.1|724593_725667_-|tRNA	tRNA (uridine(54)-C5)-methyltransferase TrmA	tRNA	A0A2K5B251	Erysipelothrix_phage	30.7	4.0e-13
>prophage 63
NZ_CP012214	Campylobacter jejuni strain CJ088CC52 chromosome, complete genome	1605714	732028	736346	1605714	tRNA	Hokovirus(66.67%)	5	NA	NA
WP_002859517.1|732028_732481_+	methylated-DNA--[protein]-cysteine S-methyltransferase	NA	A0A1S5V092	Saudi_moumouvirus	41.4	3.2e-20
WP_002885075.1|732472_733414_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002885074.1|733417_735304_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SEZ7	Hokovirus	33.0	1.8e-85
WP_002797008.1|735313_735511_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002868153.1|735503_736346_-	class 1 fructose-bisphosphatase	NA	A0A1V0SEY8	Hokovirus	36.1	3.7e-30
>prophage 64
NZ_CP012214	Campylobacter jejuni strain CJ088CC52 chromosome, complete genome	1605714	748643	749492	1605714		Enterococcus_phage(100.0%)	1	NA	NA
WP_002859530.1|748643_749492_+	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	37.6	5.4e-37
>prophage 65
NZ_CP012214	Campylobacter jejuni strain CJ088CC52 chromosome, complete genome	1605714	753405	756807	1605714	integrase	Acinetobacter_phage(50.0%)	3	751364:751380	764364:764380
751364:751380	attL	AAGCATAGCCATCAAGA	NA	NA	NA	NA
WP_002885044.1|753405_753972_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	36.5	6.8e-28
WP_002885042.1|753968_755753_-	para-aminobenzoate synthase	NA	NA	NA	NA	NA
WP_002885041.1|755742_756807_-|integrase	tyrosine-type recombinase/integrase	integrase	A0A1S6L016	Salmonella_phage	30.2	4.1e-10
764364:764380	attR	AAGCATAGCCATCAAGA	NA	NA	NA	NA
>prophage 66
NZ_CP012214	Campylobacter jejuni strain CJ088CC52 chromosome, complete genome	1605714	763362	764409	1605714		Moumouvirus(100.0%)	1	NA	NA
WP_002884820.1|763362_764409_-	DHH family phosphoesterase	NA	H2ECY1	Moumouvirus	24.1	1.3e-05
>prophage 67
NZ_CP012214	Campylobacter jejuni strain CJ088CC52 chromosome, complete genome	1605714	767521	778555	1605714		Mycobacterium_phage(33.33%)	6	NA	NA
WP_011812744.1|767521_770362_-	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	49.6	2.8e-82
WP_002884821.1|770471_772724_-	flagellar hook-associated protein FlgL	NA	NA	NA	NA	NA
WP_115768221.1|773104_775036_-	ABC-F family ATP-binding cassette domain-containing protein	NA	A0A2K9L0W2	Tupanvirus	29.4	3.5e-44
WP_002884308.1|775039_776329_-	HAMP domain-containing histidine kinase	NA	NA	NA	NA	NA
WP_002884307.1|776322_776985_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_002884306.1|776971_778555_-	phosphoglycerate dehydrogenase	NA	A0A1M7XU89	Cedratvirus	30.5	3.6e-34
>prophage 68
NZ_CP012214	Campylobacter jejuni strain CJ088CC52 chromosome, complete genome	1605714	785265	792118	1605714	tRNA	Orpheovirus(33.33%)	9	NA	NA
WP_002852567.1|785265_786258_-|tRNA	phenylalanine--tRNA ligase subunit alpha	tRNA	A0A2I2L4E3	Orpheovirus	35.1	1.9e-33
WP_002857192.1|786380_786746_+	histidine triad nucleotide-binding protein	NA	NA	NA	NA	NA
WP_002869165.1|786775_787345_-	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_011812746.1|787337_787517_-	hypothetical protein	NA	NA	NA	NA	NA
WP_053921051.1|787599_788343_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_002858785.1|788335_789064_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.3	4.2e-30
WP_057034914.1|789091_790558_-	sodium:alanine symporter family protein	NA	NA	NA	NA	NA
WP_002859556.1|790661_791129_-|tRNA	tRNA (cytidine(34)-2'-O)-methyltransferase	tRNA	NA	NA	NA	NA
WP_002885588.1|791131_792118_-	alanine racemase	NA	A0A0P0YM39	Yellowstone_lake_mimivirus	23.6	4.3e-14
>prophage 69
NZ_CP012214	Campylobacter jejuni strain CJ088CC52 chromosome, complete genome	1605714	795246	796569	1605714		Lactococcus_phage(50.0%)	2	NA	NA
WP_002860543.1|795246_796146_-	cysteine synthase A	NA	C3U2M1	Lactococcus_phage	49.7	2.8e-68
WP_002859562.1|796272_796569_-	HU family DNA-binding protein	NA	A7KV42	Bacillus_phage	53.9	1.8e-16
>prophage 70
NZ_CP012214	Campylobacter jejuni strain CJ088CC52 chromosome, complete genome	1605714	801473	814589	1605714		Hokovirus(20.0%)	15	NA	NA
WP_002853293.1|801473_802403_-	ribose-phosphate pyrophosphokinase	NA	A0A1V0SHF7	Hokovirus	37.2	1.9e-48
WP_002853290.1|802510_803170_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_002853332.1|803180_803933_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_002853252.1|803934_804714_-	bifunctional adhesin/ABC transporter aspartate/glutamate-binding protein PEB1a	NA	NA	NA	NA	NA
WP_052777659.1|804735_805464_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	38.2	1.7e-31
WP_002853285.1|805599_806388_-	methyltransferase domain-containing protein	NA	NA	NA	NA	NA
WP_002853263.1|806403_806958_-	chemotaxis protein CheB	NA	NA	NA	NA	NA
WP_002885429.1|807123_807561_+	ribose 5-phosphate isomerase B	NA	NA	NA	NA	NA
WP_002853247.1|807560_807893_+	membrane protein	NA	NA	NA	NA	NA
WP_002859569.1|807889_808438_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	38.3	8.0e-26
WP_002854047.1|808456_809053_+	DedA family protein	NA	NA	NA	NA	NA
WP_002885430.1|809049_810501_+	leucyl aminopeptidase	NA	Q6GYZ8	Mycoplasma_phage	35.3	2.4e-45
WP_002853275.1|810497_811601_+	redox-regulated ATPase YchF	NA	NA	NA	NA	NA
WP_002870278.1|811622_813005_-	argininosuccinate lyase	NA	NA	NA	NA	NA
WP_002885431.1|813014_814589_-	phosphoenolpyruvate carboxykinase (ATP)	NA	A0A2H4PQN1	Staphylococcus_phage	54.0	1.0e-150
>prophage 71
NZ_CP012214	Campylobacter jejuni strain CJ088CC52 chromosome, complete genome	1605714	834360	843813	1605714		Acanthocystis_turfacea_Chlorella_virus(25.0%)	10	NA	NA
WP_002885206.1|834360_835233_-	N-carbamoylputrescine amidohydrolase	NA	M1I5Z5	Acanthocystis_turfacea_Chlorella_virus	37.7	3.7e-49
WP_002853291.1|835229_836117_-	cation transporter	NA	NA	NA	NA	NA
WP_002859225.1|836113_837091_-	hypothetical protein	NA	M1HH76	Paramecium_bursaria_Chlorella_virus	27.4	5.2e-36
WP_002860707.1|837189_837624_-	META domain-containing protein	NA	NA	NA	NA	NA
WP_002886201.1|837639_837759_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002867433.1|837774_838308_-	histidine kinase	NA	NA	NA	NA	NA
WP_002885201.1|838764_839226_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002885200.1|839324_840857_-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	E3SNU8	Prochlorococcus_phage	51.6	4.8e-44
WP_002885199.1|840859_841630_-	DnaJ family molecular chaperone	NA	NA	NA	NA	NA
WP_002885197.1|841626_843813_-	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	39.4	3.5e-149
>prophage 72
NZ_CP012214	Campylobacter jejuni strain CJ088CC52 chromosome, complete genome	1605714	860429	860957	1605714		Bacillus_phage(100.0%)	1	NA	NA
WP_002853671.1|860429_860957_-	thermonuclease family protein	NA	O64020	Bacillus_phage	24.4	1.4e-06
>prophage 73
NZ_CP012214	Campylobacter jejuni strain CJ088CC52 chromosome, complete genome	1605714	873245	875764	1605714		Paramecium_bursaria_Chlorella_virus(50.0%)	3	NA	NA
WP_002858026.1|873245_874166_-	ornithine carbamoyltransferase	NA	M1I6M4	Paramecium_bursaria_Chlorella_virus	30.0	1.1e-19
WP_002852925.1|874162_875146_-	porphobilinogen synthase	NA	NA	NA	NA	NA
WP_002853056.1|875203_875764_+	GTP cyclohydrolase II	NA	A0A2H4PQS2	Staphylococcus_phage	45.0	5.3e-41
>prophage 74
NZ_CP012214	Campylobacter jejuni strain CJ088CC52 chromosome, complete genome	1605714	879184	890707	1605714	protease,tRNA	Vibrio_phage(25.0%)	10	NA	NA
WP_002852997.1|879184_881053_+	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	38.5	7.4e-39
WP_002852934.1|881068_881581_-	histidine phosphatase family protein	NA	NA	NA	NA	NA
WP_004307669.1|881577_882096_-|protease	rhomboid family intramembrane serine protease	protease	NA	NA	NA	NA
WP_002853001.1|882194_882611_+	PepSY-like domain-containing protein	NA	NA	NA	NA	NA
WP_002852990.1|882619_884236_-	ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein	NA	R4TQL5	Phaeocystis_globosa_virus	43.9	1.4e-70
WP_002858158.1|884239_885490_-|tRNA	tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))- methylthiotransferase MtaB	tRNA	NA	NA	NA	NA
WP_002852957.1|885486_887058_-	mechanosensitive ion channel	NA	NA	NA	NA	NA
WP_004307668.1|887054_888110_-	3-dehydroquinate synthase	NA	A0A0P0C619	Ostreococcus_mediterraneus_virus	35.0	5.7e-28
WP_002857878.1|888155_889556_-	potassium transporter TrkA	NA	NA	NA	NA	NA
WP_002853029.1|889585_890707_+|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	38.8	3.7e-70
>prophage 75
NZ_CP012214	Campylobacter jejuni strain CJ088CC52 chromosome, complete genome	1605714	895335	896788	1605714		Staphylococcus_phage(50.0%)	2	NA	NA
WP_002852965.1|895335_896031_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	24.9	5.4e-11
WP_002853599.1|896017_896788_-	ABC transporter ATP-binding protein	NA	M1HRF1	Paramecium_bursaria_Chlorella_virus	26.1	2.3e-10
>prophage 76
NZ_CP012214	Campylobacter jejuni strain CJ088CC52 chromosome, complete genome	1605714	905628	916505	1605714		Bacillus_virus(33.33%)	7	NA	NA
WP_002873314.1|905628_908217_-	DNA topoisomerase (ATP-hydrolyzing) subunit A	NA	G3M9Z5	Bacillus_virus	32.0	1.2e-98
WP_002859179.1|908257_908833_-	ComF family protein	NA	NA	NA	NA	NA
WP_004307658.1|908829_909474_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002837927.1|909550_911347_-	elongation factor 4	NA	E4ZFJ7	Streptococcus_phage	24.5	7.1e-23
WP_052777656.1|911473_912748_+	multidrug efflux RND transporter outer membrane subunit CmeD	NA	NA	NA	NA	NA
WP_002797145.1|912744_913485_+	multidrug efflux RND transporter periplasmic adaptor subunit CmeE	NA	NA	NA	NA	NA
WP_004307656.1|913487_916505_+	multidrug efflux RND transporter permease subunit CmeF	NA	S5VTK5	Leptospira_phage	24.4	8.8e-66
>prophage 77
NZ_CP012214	Campylobacter jejuni strain CJ088CC52 chromosome, complete genome	1605714	927561	930958	1605714		Klosneuvirus(50.0%)	5	NA	NA
WP_002859169.1|927561_928365_-	thiamine biosynthesis protein ThiF	NA	A0A1V0SIK8	Klosneuvirus	34.5	6.9e-10
WP_002858367.1|928361_928553_-	sulfur carrier protein ThiS	NA	NA	NA	NA	NA
WP_004307653.1|928562_929660_-	succinyl-diaminopimelate desuccinylase	NA	NA	NA	NA	NA
WP_004307652.1|929664_930264_-	LysE family transporter	NA	NA	NA	NA	NA
WP_002803435.1|930256_930958_-	NAD-dependent deacetylase	NA	A0A023MHA7	Escherichia_phage	43.3	1.9e-32
>prophage 78
NZ_CP012214	Campylobacter jejuni strain CJ088CC52 chromosome, complete genome	1605714	937867	944737	1605714	tRNA	Klosneuvirus(33.33%)	5	NA	NA
WP_002856408.1|937867_939325_-	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	40.7	9.4e-98
WP_002855710.1|939334_940696_-|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA	tRNA	NA	NA	NA	NA
WP_002869114.1|940692_940803_-	membrane protein	NA	NA	NA	NA	NA
WP_004307646.1|940796_943550_-|tRNA	isoleucine--tRNA ligase	tRNA	A0A2P1ELB8	Moumouvirus	24.9	1.5e-67
WP_002852915.1|943648_944737_+	CinA family protein	NA	B5TK85	Pseudomonas_phage	34.6	2.7e-09
>prophage 79
NZ_CP012214	Campylobacter jejuni strain CJ088CC52 chromosome, complete genome	1605714	949558	952817	1605714		Escherichia_phage(50.0%)	3	NA	NA
WP_002865738.1|949558_950110_+	single-stranded DNA-binding protein	NA	D5LH30	Escherichia_phage	42.7	4.9e-15
WP_002853032.1|950120_950381_+	30S ribosomal protein S18	NA	NA	NA	NA	NA
WP_002885146.1|950441_952817_-	endopeptidase La	NA	A0A0R6PGP8	Moraxella_phage	37.9	1.3e-133
>prophage 80
NZ_CP012214	Campylobacter jejuni strain CJ088CC52 chromosome, complete genome	1605714	962917	963820	1605714		Rhodococcus_phage(100.0%)	1	NA	NA
WP_002853442.1|962917_963820_-	M23 family metallopeptidase	NA	A0A2D0ZM66	Rhodococcus_phage	46.4	3.5e-18
>prophage 81
NZ_CP012214	Campylobacter jejuni strain CJ088CC52 chromosome, complete genome	1605714	966846	988532	1605714	protease,tRNA	Staphylococcus_phage(27.27%)	20	NA	NA
WP_002884936.1|966846_969276_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	40.1	4.8e-155
WP_002882593.1|969285_970257_-	protein translocase subunit SecF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	44.9	2.8e-50
WP_002882590.1|970256_971837_-	protein translocase subunit SecD	NA	NA	NA	NA	NA
WP_002786346.1|971829_972102_-	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	40.0	5.7e-09
WP_002884947.1|972074_973400_+	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
WP_002852836.1|973636_974833_-	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	40.8	1.1e-67
WP_002884950.1|974972_976196_+	serine/threonine transporter SstT	NA	NA	NA	NA	NA
WP_002852714.1|976205_977093_+	aspartate carbamoyltransferase catalytic subunit	NA	Q84489	Paramecium_bursaria_Chlorella_virus	33.0	2.1e-28
WP_002884952.1|977096_978818_+	M3 family oligoendopeptidase	NA	A0A1X9I5X5	Streptococcus_phage	20.7	2.2e-13
WP_002884955.1|978811_979249_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002878810.1|979245_981321_+	UvrD-helicase domain-containing protein	NA	A7KV33	Bacillus_phage	35.8	8.9e-94
WP_002884967.1|981317_982136_+|tRNA	tRNA pseudouridine(55) synthase TruB	tRNA	NA	NA	NA	NA
WP_002852854.1|982129_982357_+	carbon storage regulator CsrA	NA	NA	NA	NA	NA
WP_002884970.1|982353_983121_+	4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase	NA	NA	NA	NA	NA
WP_002884971.1|983117_983570_+	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	40.3	9.2e-20
WP_002872545.1|983580_984183_+	TlpA family protein disulfide reductase	NA	NA	NA	NA	NA
WP_002852892.1|984182_984473_+|protease	ATP-dependent Clp protease adaptor ClpS	protease	A0A218MMY6	uncultured_virus	50.6	2.8e-14
WP_052777652.1|984469_986599_+	AAA domain-containing protein	NA	K4FB40	Cronobacter_phage	44.8	1.2e-130
WP_002826100.1|986573_987221_+|tRNA	leucyl/phenylalanyl-tRNA--protein transferase	tRNA	NA	NA	NA	NA
WP_002858314.1|987242_988532_-	energy taxis response protein CetZ	NA	A0A2H4J162	uncultured_Caudovirales_phage	52.7	3.1e-12
>prophage 82
NZ_CP012214	Campylobacter jejuni strain CJ088CC52 chromosome, complete genome	1605714	991842	997822	1605714	protease	Bathycoccus_sp._RCC1105_virus(33.33%)	5	NA	NA
WP_002852796.1|991842_993780_-|protease	ATP-dependent zinc metalloprotease FtsH	protease	E5EQU5	Bathycoccus_sp._RCC1105_virus	45.3	5.8e-103
WP_002856135.1|993783_994629_-	50S ribosomal protein L11 methyltransferase	NA	NA	NA	NA	NA
WP_002866134.1|994651_995044_-	response regulator	NA	Q56AR1	Bacillus_thuringiensis_phage	33.6	4.9e-09
WP_002856519.1|995156_996050_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002884076.1|996049_997822_-	UDP-N-acetylglucosamine 4,6-dehydratase (configuration-retaining)	NA	L7Y3T9	Megavirus	29.4	2.0e-25
>prophage 83
NZ_CP012214	Campylobacter jejuni strain CJ088CC52 chromosome, complete genome	1605714	1006621	1009296	1605714		Aureococcus_anophage(50.0%)	2	NA	NA
WP_002935022.1|1006621_1008316_-	ABC-type lipopolysaccharide transporter PglK	NA	A0A076FI99	Aureococcus_anophage	28.0	2.4e-28
WP_002893768.1|1008309_1009296_-	UDP-glucose 4-epimerase GalE	NA	A0A2K9L5H6	Tupanvirus	36.0	1.6e-53
>prophage 84
NZ_CP012214	Campylobacter jejuni strain CJ088CC52 chromosome, complete genome	1605714	1015802	1033458	1605714		uncultured_virus(22.22%)	18	NA	NA
WP_100614661.1|1015802_1016777_-	glycosyltransferase family 2 protein	NA	K7Z8A5	Megavirus	27.8	5.6e-06
WP_052777644.1|1016769_1017657_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002884487.1|1017710_1018520_-	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_002884485.1|1018578_1019529_+	lipopolysaccharide heptosyltransferase II	NA	NA	NA	NA	NA
WP_002884483.1|1019514_1020279_-	glycosyltransferase family 25 protein	NA	M1PHE5	Moumouvirus	33.5	8.0e-16
WP_002869619.1|1020278_1020839_-	D-sedoheptulose 7-phosphate isomerase	NA	A0A067XQR2	Caulobacter_phage	37.4	5.9e-16
WP_002884480.1|1020835_1022221_-	D-glycero-beta-D-manno-heptose-7-phosphate kinase	NA	A0A0K0KVL9	Prochlorococcus_phage	45.4	1.9e-23
WP_052777643.1|1022213_1023167_-	ADP-glyceromanno-heptose 6-epimerase	NA	E3SL51	Synechococcus_phage	34.8	2.9e-23
WP_050457360.1|1023167_1023686_-	D-glycero-alpha-D-manno-heptose-1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
WP_002852762.1|1023809_1024112_+	cytochrome c	NA	NA	NA	NA	NA
WP_002852798.1|1024134_1024341_-	cbb3-type cytochrome oxidase assembly protein CcoS	NA	NA	NA	NA	NA
WP_079264880.1|1024337_1026695_-	heavy metal translocating P-type ATPase	NA	A0A218MNH6	uncultured_virus	28.6	9.0e-66
WP_002852852.1|1026803_1028102_+	transcription termination factor Rho	NA	NA	NA	NA	NA
WP_002860245.1|1028105_1029635_+	DNA polymerase III subunit gamma/tau	NA	A0A1L2BWV7	Bacteriophage	37.6	2.5e-45
WP_002884471.1|1029631_1030153_-	DUF2165 family protein	NA	NA	NA	NA	NA
WP_002884469.1|1030224_1032324_-	copper-translocating P-type ATPase CopA	NA	A0A218MNH6	uncultured_virus	28.9	5.7e-56
WP_002859258.1|1032323_1032518_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002884449.1|1032507_1033458_-	cation transporter	NA	A0A1V0SED0	Indivirus	24.8	8.5e-07
>prophage 85
NZ_CP012214	Campylobacter jejuni strain CJ088CC52 chromosome, complete genome	1605714	1038654	1049016	1605714	tRNA	Catovirus(20.0%)	13	NA	NA
WP_002884437.1|1038654_1039137_-	peptidylprolyl isomerase	NA	A0A1V0S9I2	Catovirus	42.9	2.5e-15
WP_002884436.1|1039146_1039854_-	YebC/PmpR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_002884435.1|1039962_1040304_+	multidrug efflux SMR transporter	NA	NA	NA	NA	NA
WP_002780599.1|1040303_1040612_+	multidrug efflux SMR transporter	NA	NA	NA	NA	NA
WP_002884434.1|1040629_1042222_-|tRNA	arginine--tRNA ligase	tRNA	L7RDT2	Acanthamoeba_polyphaga_moumouvirus	24.2	1.1e-06
WP_002852866.1|1042233_1042473_-	twin-arginine translocase TatA/TatE family subunit	NA	NA	NA	NA	NA
WP_002860253.1|1042474_1043098_-	guanylate kinase	NA	A0A223FN12	Murmansk_poxvirus	33.5	3.3e-20
WP_002871685.1|1043094_1044414_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002871684.1|1044470_1045238_-	flagellar type III secretion system protein FliR	NA	NA	NA	NA	NA
WP_002868581.1|1045224_1045860_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.6	5.8e-20
WP_002868580.1|1045872_1046946_-	elongation factor Ts	NA	NA	NA	NA	NA
WP_002853455.1|1046945_1047737_-	30S ribosomal protein S2	NA	NA	NA	NA	NA
WP_002852655.1|1047852_1049016_-	class I SAM-dependent methyltransferase	NA	A0A2K9L4K8	Tupanvirus	37.2	1.9e-53
>prophage 86
NZ_CP012214	Campylobacter jejuni strain CJ088CC52 chromosome, complete genome	1605714	1052110	1061969	1605714	tRNA	Salmonella_phage(40.0%)	8	NA	NA
WP_002871682.1|1052110_1053397_-	arsenic transporter	NA	A0A2H4PQU3	Staphylococcus_phage	36.5	1.7e-58
WP_002871681.1|1053397_1055257_-|tRNA	tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG	tRNA	NA	NA	NA	NA
WP_002777340.1|1055344_1055842_-	bipartate energy taxis response protein CetB	NA	A0A1B0V854	Salmonella_phage	41.6	1.8e-21
WP_002799338.1|1055859_1057239_-	bipartate energy taxis response protein CetA	NA	A0A2H4J162	uncultured_Caudovirales_phage	55.6	5.9e-17
WP_002859273.1|1057358_1057853_-	energy taxis response protein CetC	NA	A0A1B0V854	Salmonella_phage	39.3	1.6e-17
WP_002884430.1|1058121_1059498_+	cation:dicarboxylase symporter family transporter	NA	NA	NA	NA	NA
WP_002873176.1|1059494_1060301_-	inverse autotransporter beta-barrel domain-containing protein	NA	NA	NA	NA	NA
WP_002856300.1|1060442_1061969_+	inorganic phosphate transporter	NA	M4QMY4	Ostreococcus_lucimarinus_virus	27.5	3.9e-38
>prophage 87
NZ_CP012214	Campylobacter jejuni strain CJ088CC52 chromosome, complete genome	1605714	1073602	1074469	1605714		uncultured_phage(100.0%)	1	NA	NA
WP_002852840.1|1073602_1074469_-	signal recognition particle-docking protein FtsY	NA	D6PHS7	uncultured_phage	36.5	5.0e-14
>prophage 88
NZ_CP012214	Campylobacter jejuni strain CJ088CC52 chromosome, complete genome	1605714	1082019	1097317	1605714	protease	uncultured_virus(20.0%)	16	NA	NA
WP_002884404.1|1082019_1083180_+	M23 family metallopeptidase	NA	A8ATH6	Listeria_phage	46.3	9.6e-21
WP_002859287.1|1083176_1083380_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002859288.1|1083381_1084062_-	polyphenol oxidase family protein	NA	NA	NA	NA	NA
WP_002859289.1|1084025_1084637_-	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	30.8	2.1e-22
WP_002884402.1|1084645_1087186_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002825273.1|1087347_1087608_+	co-chaperone GroES	NA	A0A221S4G8	uncultured_virus	50.0	5.1e-15
WP_002859291.1|1087628_1089266_+	chaperonin GroEL	NA	A0A240F779	uncultured_virus	60.9	1.8e-166
WP_002884400.1|1089308_1090499_-	two-component system sensor histidine kinase DccS	NA	B5LWN0	Feldmannia_species_virus	28.1	5.1e-09
WP_002884392.1|1090491_1091157_-	two-component system response regulator DccR	NA	W8CYM9	Bacillus_phage	33.8	1.2e-23
WP_002859294.1|1091304_1091904_+	bacteriohemerythrin	NA	NA	NA	NA	NA
WP_002853192.1|1091914_1092163_+	ribbon-helix-helix domain-containing protein	NA	NA	NA	NA	NA
WP_002853241.1|1092420_1093668_-	HAMP domain-containing histidine kinase	NA	NA	NA	NA	NA
WP_002853196.1|1093664_1094339_-	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	32.9	1.1e-27
WP_002860448.1|1094414_1095833_-|protease	serine protease HtrA	protease	A0A1B1IT49	uncultured_Mediterranean_phage	33.9	7.9e-33
WP_002859296.1|1096033_1096927_+	DnaJ family protein	NA	A0A1V0SF83	Hokovirus	34.4	1.4e-19
WP_002853230.1|1096942_1097317_+	heat shock transcriptional regulator HspR	NA	Q9EYF2	Enterobacteria_phage	42.5	2.4e-05
>prophage 89
NZ_CP012214	Campylobacter jejuni strain CJ088CC52 chromosome, complete genome	1605714	1101954	1102776	1605714		Lactococcus_phage(100.0%)	1	NA	NA
WP_002860451.1|1101954_1102776_+	M23 family metallopeptidase	NA	A0A1P8BMJ0	Lactococcus_phage	42.2	7.3e-15
>prophage 90
NZ_CP012214	Campylobacter jejuni strain CJ088CC52 chromosome, complete genome	1605714	1114620	1116156	1605714		Hokovirus(100.0%)	1	NA	NA
WP_002859310.1|1114620_1116156_+	glutamine-hydrolyzing GMP synthase	NA	A0A1V0SH76	Hokovirus	29.1	3.2e-16
>prophage 91
NZ_CP012214	Campylobacter jejuni strain CJ088CC52 chromosome, complete genome	1605714	1128444	1130394	1605714		Catovirus(50.0%)	2	NA	NA
WP_002853203.1|1128444_1129566_-	molecular chaperone DnaJ	NA	A0A1V0SBY2	Catovirus	30.1	6.4e-30
WP_002853168.1|1129722_1130394_+	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	33.5	3.4e-26
>prophage 92
NZ_CP012214	Campylobacter jejuni strain CJ088CC52 chromosome, complete genome	1605714	1138245	1148363	1605714	tRNA	uncultured_Caudovirales_phage(25.0%)	9	NA	NA
WP_002884360.1|1138245_1140225_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	33.6	1.2e-18
WP_002857924.1|1140224_1141316_-	nitronate monooxygenase	NA	NA	NA	NA	NA
WP_002853870.1|1141312_1142518_-|tRNA	tyrosine--tRNA ligase	tRNA	A0A1S6UA79	Serratia_phage	29.9	3.8e-28
WP_002884356.1|1142529_1144725_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A1B1IUF0	uncultured_Mediterranean_phage	44.0	1.4e-07
WP_002853464.1|1144708_1144933_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
WP_002858454.1|1144943_1145663_-	UMP kinase	NA	NA	NA	NA	NA
WP_002884353.1|1145714_1146908_-	peptidoglycan DD-metalloendopeptidase family protein	NA	NA	NA	NA	NA
WP_002861969.1|1146904_1147711_-	FtsX-like permease family protein	NA	NA	NA	NA	NA
WP_002853534.1|1147697_1148363_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	34.8	2.8e-17
>prophage 93
NZ_CP012214	Campylobacter jejuni strain CJ088CC52 chromosome, complete genome	1605714	1157927	1164916	1605714	tRNA	Tupanvirus(25.0%)	7	NA	NA
WP_002884340.1|1157927_1159319_-|tRNA	glutamate--tRNA ligase	tRNA	A0A2K9L0I5	Tupanvirus	31.0	1.3e-16
WP_002853648.1|1159383_1160199_+	peptidylprolyl isomerase SalC	NA	NA	NA	NA	NA
WP_002884339.1|1160235_1161567_-	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
WP_002853623.1|1161568_1162024_-	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
WP_002859334.1|1162171_1162732_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	60.0	2.8e-58
WP_115768226.1|1162780_1163785_+	UDP-N-acetylglucosamine 4,6-dehydratase (inverting)	NA	A0A2P1ELS8	Moumouvirus	38.9	1.7e-45
WP_115768227.1|1163785_1164916_+	UDP-4-amino-4, 6-dideoxy-N-acetyl-beta-L-altrosamine transaminase	NA	A0A2D2W2B8	Stenotrophomonas_phage	32.1	1.8e-16
>prophage 94
NZ_CP012214	Campylobacter jejuni strain CJ088CC52 chromosome, complete genome	1605714	1173888	1192221	1605714	tRNA	uncultured_Mediterranean_phage(42.86%)	19	NA	NA
WP_002885469.1|1173888_1175397_+	AMP-binding protein	NA	A0A2K9L3I8	Tupanvirus	29.4	6.6e-38
WP_002777686.1|1175436_1175664_+	acyl carrier protein	NA	NA	NA	NA	NA
WP_002826465.1|1175660_1176731_-	hypothetical protein	NA	NA	NA	NA	NA
WP_052777635.1|1176727_1177966_-	DUF2920 family protein	NA	NA	NA	NA	NA
WP_002798276.1|1178057_1178756_+	pseudaminic acid cytidylyltransferase	NA	A0A1B1IVD3	uncultured_Mediterranean_phage	36.0	2.4e-06
WP_002784879.1|1178739_1179564_+	UDP-2,4-diacetamido-2,4, 6-trideoxy-beta-L-altropyranose hydrolase	NA	NA	NA	NA	NA
WP_002885001.1|1179560_1180034_+	UDP-4-amino-4, 6-dideoxy-N-acetyl-beta-L-altrosamine N-acetyltransferase	NA	NA	NA	NA	NA
WP_052777634.1|1179998_1180745_-	imidazole glycerol phosphate synthase subunit HisF	NA	A0A1V0SIZ6	Klosneuvirus	25.0	5.6e-06
WP_072225600.1|1180745_1181351_-	imidazole glycerol phosphate synthase subunit HisH	NA	NA	NA	NA	NA
WP_002784894.1|1181347_1182484_-	pseudaminic acid biosynthesis protein PseA	NA	NA	NA	NA	NA
WP_002859862.1|1182741_1183773_+	pseudaminic acid synthase	NA	A0A1B1IVE2	uncultured_Mediterranean_phage	33.7	1.4e-31
WP_115768229.1|1183769_1183931_+	motility accessory factor	NA	NA	NA	NA	NA
WP_052777771.1|1183896_1185870_+	motility associated factor glycosyltransferase family protein	NA	NA	NA	NA	NA
WP_002885828.1|1185866_1186838_+	4,6-dehydratase LegB	NA	A0A0P0YMS6	Yellowstone_lake_phycodnavirus	29.8	4.3e-30
WP_002859864.1|1186830_1187976_+	aminotransferase LegC	NA	NA	NA	NA	NA
WP_002885819.1|1187977_1188877_+|tRNA	methionyl-tRNA formyltransferase	tRNA	NA	NA	NA	NA
WP_002885817.1|1189035_1190040_+	N,N'-diacetyllegionaminate synthase	NA	A0A1B1IVE2	uncultured_Mediterranean_phage	35.4	5.4e-36
WP_115768230.1|1190032_1191187_+	GDP-N,N'-diacetylbacillosamine 2-epimerase (hydrolyzing)	NA	NA	NA	NA	NA
WP_002885812.1|1191195_1192221_+	CBS domain-containing protein	NA	G3MA50	Bacillus_virus	26.6	1.2e-11
>prophage 95
NZ_CP012214	Campylobacter jejuni strain CJ088CC52 chromosome, complete genome	1605714	1206907	1207915	1605714	tRNA	Moraxella_phage(100.0%)	1	NA	NA
WP_002884179.1|1206907_1207915_-|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	37.0	3.5e-43
>prophage 96
NZ_CP012214	Campylobacter jejuni strain CJ088CC52 chromosome, complete genome	1605714	1214464	1217116	1605714		uncultured_Caudovirales_phage(50.0%)	3	NA	NA
WP_002882700.1|1214464_1215433_+	ABC transporter permease	NA	A0A2H4IY97	uncultured_Caudovirales_phage	47.2	6.3e-74
WP_002884174.1|1215425_1216364_+	iron chelate uptake ABC transporter family permease subunit	NA	NA	NA	NA	NA
WP_002884173.1|1216360_1217116_+	ABC transporter ATP-binding protein	NA	Q9EMR9	Amsacta_moorei_entomopoxvirus	31.6	4.1e-20
>prophage 97
NZ_CP012214	Campylobacter jejuni strain CJ088CC52 chromosome, complete genome	1605714	1227151	1228159	1605714		Dinoroseobacter_phage(100.0%)	1	NA	NA
WP_002859650.1|1227151_1228159_+	Holliday junction branch migration DNA helicase RuvB	NA	A0A1V0DYC6	Dinoroseobacter_phage	31.7	2.0e-06
>prophage 98
NZ_CP012214	Campylobacter jejuni strain CJ088CC52 chromosome, complete genome	1605714	1233810	1235607	1605714		Paramecium_bursaria_Chlorella_virus(100.0%)	1	NA	NA
WP_002884165.1|1233810_1235607_-	glutamine--fructose-6-phosphate transaminase (isomerizing)	NA	M1I9J5	Paramecium_bursaria_Chlorella_virus	36.2	5.0e-93
>prophage 99
NZ_CP012214	Campylobacter jejuni strain CJ088CC52 chromosome, complete genome	1605714	1239177	1240497	1605714		Moraxella_phage(100.0%)	1	NA	NA
WP_002884163.1|1239177_1240497_+	NCS2 family permease	NA	A0A0R6PHV4	Moraxella_phage	30.3	2.0e-51
>prophage 100
NZ_CP012214	Campylobacter jejuni strain CJ088CC52 chromosome, complete genome	1605714	1244777	1245380	1605714		Cassava_brown_streak_virus(100.0%)	1	NA	NA
WP_002884160.1|1244777_1245380_-	RdgB/HAM1 family non-canonical purine NTP pyrophosphatase	NA	A0A0N7HHA4	Cassava_brown_streak_virus	29.7	8.0e-11
>prophage 101
NZ_CP012214	Campylobacter jejuni strain CJ088CC52 chromosome, complete genome	1605714	1254732	1256157	1605714		Tupanvirus(100.0%)	1	NA	NA
WP_002885231.1|1254732_1256157_+	catalase	NA	A0A2K9L0T1	Tupanvirus	44.8	9.8e-92
>prophage 102
NZ_CP012214	Campylobacter jejuni strain CJ088CC52 chromosome, complete genome	1605714	1260499	1261867	1605714		uncultured_Mediterranean_phage(100.0%)	1	NA	NA
WP_002885239.1|1260499_1261867_+	adenylosuccinate lyase	NA	A0A1B1ISB0	uncultured_Mediterranean_phage	23.6	3.8e-08
>prophage 103
NZ_CP012214	Campylobacter jejuni strain CJ088CC52 chromosome, complete genome	1605714	1266852	1267677	1605714		Diadromus_pulchellus_ascovirus(100.0%)	1	NA	NA
WP_002780456.1|1266852_1267677_-	enoyl-ACP reductase FabI	NA	F2NZ40	Diadromus_pulchellus_ascovirus	24.6	1.4e-05
>prophage 104
NZ_CP012214	Campylobacter jejuni strain CJ088CC52 chromosome, complete genome	1605714	1271966	1276119	1605714		Bacillus_phage(50.0%)	5	NA	NA
WP_079264894.1|1271966_1273355_-	phosphoglucosamine mutase PgmL	NA	A0A127AWJ1	Bacillus_phage	32.9	1.0e-53
WP_002780442.1|1273457_1273994_+	flagellar basal body-associated protein FliL	NA	NA	NA	NA	NA
WP_002857939.1|1273993_1274341_+	holo-ACP synthase	NA	NA	NA	NA	NA
WP_002780440.1|1274341_1274761_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002780438.1|1274757_1276119_-	cytochrome P450	NA	A0A2I2L481	Orpheovirus	24.6	1.7e-32
>prophage 105
NZ_CP012214	Campylobacter jejuni strain CJ088CC52 chromosome, complete genome	1605714	1280556	1281820	1605714		Tupanvirus(50.0%)	2	NA	NA
WP_052777764.1|1280556_1281069_-	adenylyl-sulfate kinase	NA	A0A2K9L4R9	Tupanvirus	29.8	4.5e-07
WP_002825812.1|1281058_1281820_-	NTP transferase domain-containing protein	NA	G3MA50	Bacillus_virus	56.9	3.4e-06
>prophage 106
NZ_CP012214	Campylobacter jejuni strain CJ088CC52 chromosome, complete genome	1605714	1288254	1294324	1605714		Synechococcus_phage(28.57%)	7	NA	NA
WP_002885276.1|1288254_1288929_-	NTP transferase domain-containing protein	NA	A0A0G2Y8M0	Acanthamoeba_polyphaga_mimivirus	25.9	3.9e-06
WP_002860371.1|1288916_1289522_-	D-sedoheptulose 7-phosphate isomerase	NA	A0A067XQR2	Caulobacter_phage	35.0	3.7e-16
WP_002885278.1|1289509_1290529_-	D-glycero-D-manno-heptose 7-phosphate kinase	NA	A0A222YW25	Synechococcus_phage	40.5	1.6e-59
WP_002885281.1|1290525_1291557_-	GDP-mannose 4,6-dehydratase	NA	A0A222YY99	Synechococcus_phage	73.6	6.5e-146
WP_002868499.1|1291553_1292717_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	A0A218MN59	uncultured_virus	29.9	7.3e-45
WP_002885286.1|1292717_1293764_-	GDP-L-fucose synthase	NA	M1HKX0	Paramecium_bursaria_Chlorella_virus	43.4	8.6e-69
WP_002868501.1|1293763_1294324_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A1D7XFA9	Escherichia_phage	31.6	5.0e-15
>prophage 107
NZ_CP012214	Campylobacter jejuni strain CJ088CC52 chromosome, complete genome	1605714	1299248	1306425	1605714		Klosneuvirus(33.33%)	7	NA	NA
WP_002884805.1|1299248_1300256_-	NAD(P)-dependent oxidoreductase	NA	A0A1V0SLA7	Klosneuvirus	26.9	1.4e-15
WP_002868243.1|1300259_1300973_-	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	NA	NA	NA	NA	NA
WP_052775286.1|1300975_1302025_-	CDP-glycerol--glycerophosphate glycerophosphotransferase	NA	NA	NA	NA	NA
WP_002868241.1|1302027_1302975_-	KpsF/GutQ family sugar-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	32.8	2.9e-39
WP_002868240.1|1302984_1304643_-	sugar ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_002858848.1|1304644_1305763_-	capsule polysaccharide transporter	NA	NA	NA	NA	NA
WP_002781126.1|1305762_1306425_-	ABC transporter ATP-binding protein	NA	Q9EMR9	Amsacta_moorei_entomopoxvirus	21.1	6.5e-06
>prophage 108
NZ_CP012214	Campylobacter jejuni strain CJ088CC52 chromosome, complete genome	1605714	1327385	1328798	1605714		Vibrio_phage(100.0%)	1	NA	NA
WP_002871859.1|1327385_1328798_-	pilus (MSHA type) biogenesis protein MshL	NA	R9TEZ5	Vibrio_phage	25.5	1.6e-14
>prophage 109
NZ_CP012214	Campylobacter jejuni strain CJ088CC52 chromosome, complete genome	1605714	1338152	1340519	1605714		Campylobacter_virus(100.0%)	1	NA	NA
WP_002869789.1|1338152_1340519_-	hypothetical protein	NA	H6SUL3	Campylobacter_virus	29.0	3.0e-05
>prophage 110
NZ_CP012214	Campylobacter jejuni strain CJ088CC52 chromosome, complete genome	1605714	1347886	1351835	1605714		Acinetobacter_phage(50.0%)	5	NA	NA
WP_002884775.1|1347886_1349005_-	glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit	NA	A0A0P0IKJ1	Acinetobacter_phage	30.1	1.3e-06
WP_002851269.1|1349004_1349556_-	DUF507 family protein	NA	NA	NA	NA	NA
WP_053920982.1|1349648_1350167_-	MotE family protein	NA	NA	NA	NA	NA
WP_002797496.1|1350159_1350588_-	FliJ family protein	NA	NA	NA	NA	NA
WP_002855302.1|1350584_1351835_-	adenylosuccinate synthase	NA	L7Y4J5	Megavirus	38.0	8.1e-74
>prophage 111
NZ_CP012214	Campylobacter jejuni strain CJ088CC52 chromosome, complete genome	1605714	1360374	1362477	1605714		uncultured_Caudovirales_phage(100.0%)	1	NA	NA
WP_002833220.1|1360374_1362477_-	aspartate chemotaxis receptor CcaA	NA	A0A2H4J162	uncultured_Caudovirales_phage	81.2	3.6e-10
>prophage 112
NZ_CP012214	Campylobacter jejuni strain CJ088CC52 chromosome, complete genome	1605714	1380878	1390887	1605714		Cyanophage(20.0%)	10	NA	NA
WP_002869553.1|1380878_1381868_-	phosphoribosylformylglycinamidine cyclo-ligase	NA	A0A1D7SQF5	Cyanophage	43.5	1.2e-59
WP_002856113.1|1381928_1382534_+	dephospho-CoA kinase	NA	NA	NA	NA	NA
WP_002855997.1|1382530_1383280_+	diaminopimelate epimerase	NA	NA	NA	NA	NA
WP_002856551.1|1383254_1383986_+	mannosyl-glycoprotein endo-beta-N-acetylglucosamidase	NA	A0A218MMX0	uncultured_virus	42.2	7.9e-13
WP_002855524.1|1383982_1385020_-	ATP-binding protein	NA	NA	NA	NA	NA
WP_002851546.1|1385084_1385534_-	DNA starvation/stationary phase protection protein	NA	NA	NA	NA	NA
WP_002860682.1|1385660_1386881_-	glucose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_002860681.1|1386874_1387699_-	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	44.9	1.7e-56
WP_002855506.1|1387780_1389754_-	acetate--CoA ligase	NA	A0A2H4PQU7	Staphylococcus_phage	37.1	2.2e-78
WP_002884263.1|1389891_1390887_-	ABC transporter ATP-binding protein	NA	A0A2H4UUX5	Bodo_saltans_virus	27.7	1.2e-11
>prophage 113
NZ_CP012214	Campylobacter jejuni strain CJ088CC52 chromosome, complete genome	1605714	1397005	1406498	1605714		Powai_lake_megavirus(20.0%)	7	NA	NA
WP_002856398.1|1397005_1397455_+	biotin transporter BioY	NA	A0A167RLA9	Powai_lake_megavirus	36.2	1.2e-16
WP_002855786.1|1397456_1398533_-	NAD(P)-dependent alcohol dehydrogenase	NA	A0A2K9L7I1	Tupanvirus	41.0	1.5e-71
WP_002884276.1|1398662_1400972_+	DEAD/DEAH box helicase family protein	NA	A0A097BY72	Enterococcus_phage	27.6	1.1e-20
WP_002884277.1|1400983_1402651_+	DUF262 domain-containing protein	NA	NA	NA	NA	NA
WP_032593121.1|1402647_1403823_+	restriction endonuclease subunit S	NA	NA	NA	NA	NA
WP_002884281.1|1403942_1405013_+	Fic family protein	NA	D7RWK9	Brochothrix_phage	30.6	4.9e-27
WP_057034976.1|1405013_1406498_+	type I restriction-modification system subunit M	NA	J7I0U9	Acinetobacter_phage	32.5	1.1e-37
>prophage 114
NZ_CP012214	Campylobacter jejuni strain CJ088CC52 chromosome, complete genome	1605714	1427324	1427990	1605714		Bacillus_virus(100.0%)	1	NA	NA
WP_002858929.1|1427324_1427990_-	ATP-binding cassette domain-containing protein	NA	G3M9Y6	Bacillus_virus	28.7	1.2e-10
>prophage 115
NZ_CP012214	Campylobacter jejuni strain CJ088CC52 chromosome, complete genome	1605714	1435425	1437057	1605714		Aureococcus_anophage(100.0%)	1	NA	NA
WP_002851469.1|1435425_1437057_-	multidrug ABC transporter permease/ATP-binding protein	NA	A0A076FI99	Aureococcus_anophage	26.2	7.2e-14
>prophage 116
NZ_CP012214	Campylobacter jejuni strain CJ088CC52 chromosome, complete genome	1605714	1442855	1447416	1605714		Cellulophaga_phage(50.0%)	5	NA	NA
WP_002858407.1|1442855_1443755_+	ATP phosphoribosyltransferase	NA	A0A0F7Q4B0	Cellulophaga_phage	67.6	2.0e-05
WP_002867578.1|1443762_1445049_+	histidinol dehydrogenase	NA	NA	NA	NA	NA
WP_002884745.1|1445045_1446104_+	bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB	NA	NA	NA	NA	NA
WP_002884742.1|1446100_1446688_+	imidazole glycerol phosphate synthase subunit HisH	NA	NA	NA	NA	NA
WP_002860060.1|1446684_1447416_+	1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase	NA	A0A2H4UVM0	Bodo_saltans_virus	27.0	3.4e-08
>prophage 117
NZ_CP012214	Campylobacter jejuni strain CJ088CC52 chromosome, complete genome	1605714	1458204	1468647	1605714		Acinetobacter_phage(25.0%)	9	NA	NA
WP_002884732.1|1458204_1460337_+	TonB-dependent receptor	NA	A0A0P0I887	Acinetobacter_phage	26.0	3.6e-05
WP_002856526.1|1460311_1461298_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_002882736.1|1461297_1462074_+	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	26.9	4.5e-14
WP_002882735.1|1462070_1462877_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_079743495.1|1462873_1463791_-	radical SAM/SPASM domain-containing protein	NA	NA	NA	NA	NA
WP_002851199.1|1463896_1465156_+	MFS transporter	NA	Q6JIH2	Burkholderia_virus	27.6	5.7e-35
WP_002858960.1|1465141_1466161_-	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
WP_002884723.1|1466233_1466986_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002858962.1|1467636_1468647_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A1V0SE20	Indivirus	35.9	1.6e-27
>prophage 118
NZ_CP012214	Campylobacter jejuni strain CJ088CC52 chromosome, complete genome	1605714	1477125	1482175	1605714		Pandoravirus(25.0%)	5	NA	NA
WP_002871882.1|1477125_1478214_-	chorismate synthase	NA	A0A291AU41	Pandoravirus	39.0	2.3e-61
WP_002851153.1|1478213_1478888_-	ribonuclease III	NA	A0A2K9L8W0	Tupanvirus	35.4	1.4e-24
WP_002871883.1|1478874_1479315_-	ribonuclease HI	NA	J9Q745	Salmonella_phage	40.0	3.2e-25
WP_002871884.1|1479301_1480288_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002871885.1|1480357_1482175_+	DNA primase	NA	A0A1S5RH90	Helicobacter_phage	35.6	1.3e-51
>prophage 119
NZ_CP012214	Campylobacter jejuni strain CJ088CC52 chromosome, complete genome	1605714	1485736	1486582	1605714		Indivirus(100.0%)	1	NA	NA
WP_002851379.1|1485736_1486582_+	polyprenyl synthetase family protein	NA	A0A1V0SE37	Indivirus	28.6	2.8e-09
>prophage 120
NZ_CP012214	Campylobacter jejuni strain CJ088CC52 chromosome, complete genome	1605714	1489601	1490324	1605714		Planktothrix_phage(100.0%)	1	NA	NA
WP_052777724.1|1489601_1490324_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	33.8	5.4e-22
>prophage 121
NZ_CP012214	Campylobacter jejuni strain CJ088CC52 chromosome, complete genome	1605714	1494255	1497037	1605714		uncultured_Caudovirales_phage(66.67%)	3	NA	NA
WP_002826385.1|1494255_1494714_-	C40 family peptidase	NA	A0A2H5BM69	Streptomyces_phage	43.9	7.9e-19
WP_002868282.1|1494722_1495892_-	Na+/H+ antiporter NhaA	NA	A0A2H4J5W3	uncultured_Caudovirales_phage	42.1	2.2e-65
WP_002867539.1|1495888_1497037_-	Na+/H+ antiporter NhaA	NA	A0A2H4J5W3	uncultured_Caudovirales_phage	45.5	7.9e-76
>prophage 122
NZ_CP012214	Campylobacter jejuni strain CJ088CC52 chromosome, complete genome	1605714	1504736	1505390	1605714		Planktothrix_phage(100.0%)	1	NA	NA
WP_002858988.1|1504736_1505390_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	38.2	2.7e-28
>prophage 123
NZ_CP012214	Campylobacter jejuni strain CJ088CC52 chromosome, complete genome	1605714	1509930	1512206	1605714		Streptococcus_phage(50.0%)	2	NA	NA
WP_052823726.1|1509930_1511175_-	phosphopyruvate hydratase	NA	A0A1X9I5Z8	Streptococcus_phage	52.6	2.0e-109
WP_002851424.1|1511174_1512206_-	recombinase RecA	NA	A0A0S2MVG1	Bacillus_phage	63.4	1.5e-113
>prophage 124
NZ_CP012214	Campylobacter jejuni strain CJ088CC52 chromosome, complete genome	1605714	1519281	1521384	1605714		Catovirus(100.0%)	1	NA	NA
WP_002899161.1|1519281_1521384_-	type I DNA topoisomerase	NA	A0A1V0SB35	Catovirus	37.8	2.1e-98
>prophage 125
NZ_CP012214	Campylobacter jejuni strain CJ088CC52 chromosome, complete genome	1605714	1546777	1547920	1605714		Halovirus(50.0%)	2	NA	NA
WP_002834281.1|1546777_1547161_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	R4T9S8	Halovirus	35.9	3.8e-06
WP_002795202.1|1547320_1547920_+	NAD(P)/FAD-dependent oxidoreductase	NA	A0A2K9L162	Tupanvirus	32.0	1.7e-08
>prophage 126
NZ_CP012214	Campylobacter jejuni strain CJ088CC52 chromosome, complete genome	1605714	1553980	1558868	1605714		uncultured_Mediterranean_phage(33.33%)	3	NA	NA
WP_002899193.1|1553980_1555303_+	chromosomal replication initiator protein DnaA	NA	A0A1B1INM7	uncultured_Mediterranean_phage	30.5	5.3e-07
WP_002855594.1|1555462_1556530_+	DNA polymerase III subunit beta	NA	A0A0A8IL17	Aurantimonas_phage	21.4	1.1e-10
WP_053920972.1|1556558_1558868_+	DNA topoisomerase (ATP-hydrolyzing) subunit B	NA	G3M9Z3	Bacillus_virus	38.6	2.8e-128
>prophage 127
NZ_CP012214	Campylobacter jejuni strain CJ088CC52 chromosome, complete genome	1605714	1569783	1570631	1605714		Emiliania_huxleyi_virus(50.0%)	2	NA	NA
WP_002853153.1|1569783_1570359_-	ribonuclease HII	NA	G9E3X7	Emiliania_huxleyi_virus	37.7	6.4e-18
WP_002855574.1|1570391_1570631_-	ComEA family DNA-binding protein	NA	A0A1V0SDW0	Indivirus	41.1	4.0e-06
>prophage 128
NZ_CP012214	Campylobacter jejuni strain CJ088CC52 chromosome, complete genome	1605714	1574982	1591398	1605714		Streptococcus_virus(14.29%)	13	NA	NA
WP_002779268.1|1574982_1575657_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A1U9WRB5	Streptococcus_virus	36.4	1.1e-27
WP_002884672.1|1575677_1577204_-	disulfide bond formation protein DsbI	NA	NA	NA	NA	NA
WP_002779270.1|1577215_1577383_-	disulfide bond formation protein Dba	NA	NA	NA	NA	NA
WP_002853148.1|1577488_1579267_-	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	35.1	3.4e-09
WP_002853120.1|1579256_1580171_-	cytochrome-c peroxidase	NA	NA	NA	NA	NA
WP_002853085.1|1580234_1581113_-	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA	NA
WP_002820948.1|1581233_1582130_-	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_002787425.1|1582210_1583539_+	adenylosuccinate lyase	NA	A0A1B3B081	Gordonia_phage	32.5	3.2e-20
WP_002853090.1|1583553_1585923_+	ribonucleoside-diphosphate reductase subunit alpha	NA	A0A2H4P767	Pseudomonas_phage	38.0	9.1e-143
WP_002884674.1|1585960_1587346_-	cation:dicarboxylase symporter family transporter	NA	NA	NA	NA	NA
WP_002853111.1|1587465_1588089_-	FAD-dependent thymidylate synthase	NA	A0A1B0XW95	Campylobacter_phage	51.7	2.9e-48
WP_002855601.1|1588208_1589840_+	CTP synthase	NA	A0A1J0FA14	Only_Syngen_Nebraska_virus	52.1	7.9e-146
WP_002855578.1|1589826_1591398_+	single-stranded-DNA-specific exonuclease RecJ	NA	A0A0R6PDC6	Moraxella_phage	47.4	3.4e-53
