assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_003354925.1_ASM335492v1	NZ_CP022720	Staphylococcus aureus strain 135 chromosome, complete genome	1	775215-775295	1	CRISPRCasFinder	no	cas3	cas3,DEDDh,DinG,csa3,WYL	Unclear	TTCTTTATGTTGGGGCCCCGCCAACT	26	1	16	775241-775269|775241-775269|775241-775269|775241-775269|775241-775269|775241-775269|775241-775269|775241-775269|775241-775269|775241-775269|775241-775269|775241-775269|775241-775269|775241-775269|775241-775269|775241-775269	NZ_CP022720.1_1092645-1092617|NZ_CP022720.1_2689281-2689309|NZ_CP022720.1_249187-249159|NZ_CP022720.1_331595-331567|NZ_CP022720.1_331650-331622|NZ_CP022720.1_1620361-1620389|NZ_CP022720.1_1741430-1741402|NZ_CP022720.1_1796624-1796596|NZ_CP022720.1_129780-129752|NZ_CP022720.1_129838-129810|NZ_CP022720.1_995474-995502|NZ_CP022720.1_1180887-1180859|NZ_CP022720.1_1954813-1954841|NZ_CP022720.1_2253166-2253194|NZ_CP022720.1_2444236-2444208|NZ_CP022720.1_2444294-2444266	NA	1	1	Unclear	cas3,DEDDh,DinG,csa3,WYL	NA|35aa|up_7|NZ_CP022720.1_766128_766233_+,NA|36aa|up_5|NZ_CP022720.1_767665_767773_+,NA	NA|191aa|up_9|NZ_CP022720.1_762569_763142_+	COG1544, COG1544, Ribosome-associated protein Y (PSrp-1) [Translation, ribosomal structure and biogenesis]	NA|844aa|up_8|NZ_CP022720.1_763555_766087_+	PRK12904, PRK12904, preprotein translocase subunit SecA; Reviewed	NA|35aa|up_7|NZ_CP022720.1_766128_766233_+	NA	NA|370aa|up_6|NZ_CP022720.1_766401_767512_+	PRK00578, prfB, peptide chain release factor 2; Validated	NA|36aa|up_5|NZ_CP022720.1_767665_767773_+	NA	NA|280aa|up_4|NZ_CP022720.1_767920_768760_+	COG3942, COG3942, Surface antigen [General function prediction only]	NA|217aa|up_3|NZ_CP022720.1_768933_769584_+	pfam12917, HD_2, HD containing hydrolase-like enzyme	NA|79aa|up_2|NZ_CP022720.1_769580_769817_+	COG4897, CsbA, Uncharacterized protein conserved in bacteria [Function unknown]	NA|662aa|up_1|NZ_CP022720.1_770085_772071_+	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|949aa|up_0|NZ_CP022720.1_772078_774925_+	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|311aa|down_0|NZ_CP022720.1_775531_776464_+	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional	NA|280aa|down_1|NZ_CP022720.1_776469_777309_+	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed	NA|162aa|down_2|NZ_CP022720.1_777316_777802_+	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins	NA|480aa|down_3|NZ_CP022720.1_777809_779249_+	sd00008, TPR_YbbN, C-terminal Tetratricopeptide repeat (TPR) region of YbbN and similar motifs	NA|312aa|down_4|NZ_CP022720.1_779315_780251_+	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase	NA|304aa|down_5|NZ_CP022720.1_781075_781987_+	COG1660, COG1660, Predicted P-loop-containing kinase [General function prediction only]	NA|332aa|down_6|NZ_CP022720.1_781983_782979_+	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|315aa|down_7|NZ_CP022720.1_783089_784034_+	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA	NA|196aa|down_8|NZ_CP022720.1_784606_785194_+	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed	NA|301aa|down_9|NZ_CP022720.1_785436_786339_-	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]
GCF_003354925.1_ASM335492v1	NZ_CP022720	Staphylococcus aureus strain 135 chromosome, complete genome	2	780708-780791	2	CRISPRCasFinder	no	cas3	cas3,DEDDh,DinG,csa3,WYL	Unclear	TCTGTGTTGGCGCCCACACCCCAACT	26	1	5	780734-780765|780734-780765|780734-780765|780734-780765|780734-780765	NZ_CP022720.1_1022031-1022062|NZ_CP022720.1_1305286-1305255|NZ_CP022720.1_1392962-1392993|NZ_CP022720.1_1945405-1945436|NZ_CP022720.1_1652925-1652956	NA	1	1	Unclear	cas3,DEDDh,DinG,csa3,WYL	NA,NA	NA|280aa|up_9|NZ_CP022720.1_767920_768760_+	COG3942, COG3942, Surface antigen [General function prediction only]	NA|217aa|up_8|NZ_CP022720.1_768933_769584_+	pfam12917, HD_2, HD containing hydrolase-like enzyme	NA|79aa|up_7|NZ_CP022720.1_769580_769817_+	COG4897, CsbA, Uncharacterized protein conserved in bacteria [Function unknown]	NA|662aa|up_6|NZ_CP022720.1_770085_772071_+	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|949aa|up_5|NZ_CP022720.1_772078_774925_+	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|311aa|up_4|NZ_CP022720.1_775531_776464_+	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional	NA|280aa|up_3|NZ_CP022720.1_776469_777309_+	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed	NA|162aa|up_2|NZ_CP022720.1_777316_777802_+	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins	NA|480aa|up_1|NZ_CP022720.1_777809_779249_+	sd00008, TPR_YbbN, C-terminal Tetratricopeptide repeat (TPR) region of YbbN and similar motifs	NA|312aa|up_0|NZ_CP022720.1_779315_780251_+	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase	NA|304aa|down_0|NZ_CP022720.1_781075_781987_+	COG1660, COG1660, Predicted P-loop-containing kinase [General function prediction only]	NA|332aa|down_1|NZ_CP022720.1_781983_782979_+	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|315aa|down_2|NZ_CP022720.1_783089_784034_+	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA	NA|196aa|down_3|NZ_CP022720.1_784606_785194_+	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed	NA|301aa|down_4|NZ_CP022720.1_785436_786339_-	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]	NA|210aa|down_5|NZ_CP022720.1_787041_787671_+	PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed	NA|338aa|down_6|NZ_CP022720.1_788425_789439_+	COG2390, DeoR, Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription]	NA|337aa|down_7|NZ_CP022720.1_789491_790502_+	TIGR01534, Glyceraldehyde-3-phosphate_dehydrogenase, glyceraldehyde-3-phosphate dehydrogenase, type I	NA|397aa|down_8|NZ_CP022720.1_790639_791830_+	PRK00073, pgk, phosphoglycerate kinase; Provisional	NA|254aa|down_9|NZ_CP022720.1_791951_792713_+	PRK00042, tpiA, triosephosphate isomerase; Provisional
GCF_003354925.1_ASM335492v1	NZ_CP022720	Staphylococcus aureus strain 135 chromosome, complete genome	3	1652957-1653042	3	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	TCTGTGTTGGGGCCCCATCCCCAACTT	27	1	9	1652984-1653015|1652984-1653015|1652984-1653015|1652984-1653015|1652984-1653015|1652984-1653015|1652984-1653015|1652984-1653015|1652984-1653015	NZ_CP022720.1_233994-234025|NZ_CP022720.1_331481-331450|NZ_CP022720.1_995532-995563|NZ_CP022720.1_995648-995679|NZ_CP022720.1_1096840-1096809|NZ_CP022720.1_1180828-1180797|NZ_CP022720.1_1305344-1305313|NZ_CP022720.1_1392904-1392935|NZ_CP022720.1_1796738-1796707	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA,NA|49aa|down_3|NZ_CP022720.1_1657047_1657194_-,NA|43aa|down_8|NZ_CP022720.1_1660230_1660359_-	NA|208aa|up_9|NZ_CP022720.1_1641694_1642318_-	PRK05480, PRK05480, uridine/cytidine kinase; Provisional	NA|423aa|up_8|NZ_CP022720.1_1642317_1643586_-	COG0826, COG0826, Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]	NA|308aa|up_7|NZ_CP022720.1_1643597_1644521_-	COG0826, COG0826, Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]	NA|213aa|up_6|NZ_CP022720.1_1644523_1645162_-	COG4122, COG4122, Predicted O-methyltransferase [General function prediction only]	NA|103aa|up_5|NZ_CP022720.1_1645446_1645755_-	PRK13678, PRK13678, hypothetical protein; Provisional	NA|143aa|up_4|NZ_CP022720.1_1645769_1646198_-	COG0816, COG0816, Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B	NA|87aa|up_3|NZ_CP022720.1_1646201_1646462_-	PRK05473, IreB-like, IreB family regulatory phosphoprotein	NA|877aa|up_2|NZ_CP022720.1_1646524_1649155_-	PRK00252, alaS, alanyl-tRNA synthetase; Reviewed	NA|826aa|up_1|NZ_CP022720.1_1649497_1651975_-	TIGR01448, recD_rel, helicase, putative, RecD/TraA family	NA|223aa|up_0|NZ_CP022720.1_1651976_1652645_-	sd00006, TPR, Tetratricopeptide repeat	NA|373aa|down_0|NZ_CP022720.1_1653224_1654343_-	PRK00143, mnmA, tRNA-specific 2-thiouridylase MnmA; Reviewed	NA|381aa|down_1|NZ_CP022720.1_1654343_1655486_-	COG1104, NifS, Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]	NA|338aa|down_2|NZ_CP022720.1_1655797_1656811_+	TIGR03558, oxido_grp_1, luciferase family oxidoreductase, group 1	NA|49aa|down_3|NZ_CP022720.1_1657047_1657194_-	NA	NA|61aa|down_4|NZ_CP022720.1_1657233_1657416_-	COG3237, COG3237, Uncharacterized protein conserved in bacteria [Function unknown]	NA|141aa|down_5|NZ_CP022720.1_1657515_1657938_-	COG1959, COG1959, Predicted transcriptional regulator [Transcription]	NA|425aa|down_6|NZ_CP022720.1_1658022_1659297_+	PRK13342, PRK13342, recombination factor protein RarA; Reviewed	NA|258aa|down_7|NZ_CP022720.1_1659457_1660231_-	COG1179, COG1179, Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]	NA|43aa|down_8|NZ_CP022720.1_1660230_1660359_-	NA	NA|589aa|down_9|NZ_CP022720.1_1660691_1662458_-	PRK00476, aspS, aspartyl-tRNA synthetase; Validated
GCF_003354925.1_ASM335492v1	NZ_CP022720	Staphylococcus aureus strain 135 chromosome, complete genome	4	1739095-1739177	4	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	ATGCAAGTTGGGGTGGGGCCCCAACA	26	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA,NA|38aa|down_4|NZ_CP022720.1_1743631_1743745_-	NA|423aa|up_9|NZ_CP022720.1_1723474_1724743_-	PRK07006, PRK07006, isocitrate dehydrogenase; Reviewed	NA|374aa|up_8|NZ_CP022720.1_1724791_1725913_-	PRK14035, PRK14035, citrate synthase; Provisional	NA|454aa|up_7|NZ_CP022720.1_1726260_1727622_+	COG1113, AnsP, Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]	NA|586aa|up_6|NZ_CP022720.1_1727969_1729727_-	PRK06354, PRK06354, pyruvate kinase; Provisional	NA|323aa|up_5|NZ_CP022720.1_1729748_1730717_-	PRK03202, PRK03202, ATP-dependent 6-phosphofructokinase	NA|315aa|up_4|NZ_CP022720.1_1730985_1731930_-	PRK05724, PRK05724, acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated	NA|286aa|up_3|NZ_CP022720.1_1731929_1732787_-	PRK05654, PRK05654, acetyl-CoA carboxylase carboxyltransferase subunit beta	NA|410aa|up_2|NZ_CP022720.1_1732981_1734211_-	PRK07232, PRK07232, bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed	NA|1066aa|up_1|NZ_CP022720.1_1734660_1737858_-	COG0587, DnaE, DNA polymerase III, alpha subunit [DNA replication, recombination, and repair]	NA|314aa|up_0|NZ_CP022720.1_1737878_1738820_-	COG0618, COG0618, Exopolyphosphatase-related proteins [General function prediction only]	NA|433aa|down_0|NZ_CP022720.1_1739271_1740570_-	COG4109, COG4109, Predicted transcriptional regulator containing CBS domains [Transcription]	NA|138aa|down_1|NZ_CP022720.1_1740774_1741188_+	pfam00582, Usp, Universal stress protein family	NA|230aa|down_2|NZ_CP022720.1_1741633_1742323_-	PRK00685, PRK00685, metal-dependent hydrolase; Provisional	NA|352aa|down_3|NZ_CP022720.1_1742497_1743553_+	COG0006, PepP, Xaa-Pro aminopeptidase [Amino acid transport and metabolism]	NA|38aa|down_4|NZ_CP022720.1_1743631_1743745_-	NA	NA|373aa|down_5|NZ_CP022720.1_1743868_1744987_-	cd05305, L-AlaDH, Alanine dehydrogenase NAD-binding and catalytic domains	NA|167aa|down_6|NZ_CP022720.1_1745127_1745628_+	pfam00582, Usp, Universal stress protein family	NA|401aa|down_7|NZ_CP022720.1_1745873_1747076_-	PRK00180, PRK00180, acetate kinase A/propionate kinase 2; Reviewed	NA|316aa|down_8|NZ_CP022720.1_1747163_1748111_-	COG0827, COG0827, Adenine-specific DNA methylase [DNA replication, recombination, and repair]	NA|165aa|down_9|NZ_CP022720.1_1748233_1748728_-	PRK00522, tpx, thiol peroxidase
GCF_003354925.1_ASM335492v1	NZ_CP022720	Staphylococcus aureus strain 135 chromosome, complete genome	5	2403465-2403562	5	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	TTTCTGCGAATTTTATGAGCTAGAAAGGC	29	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|35aa|up_2|NZ_CP022720.1_2401187_2401292_+,NA|40aa|down_0|NZ_CP022720.1_2403740_2403860_-	NA|200aa|up_9|NZ_CP022720.1_2394664_2395264_-	COG1651, DsbG, Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]	NA|121aa|up_8|NZ_CP022720.1_2395282_2395645_-	pfam14729, DUF4467, Domain of unknown function with cystatin-like fold (DUF4467)	NA|417aa|up_7|NZ_CP022720.1_2395899_2397150_+	pfam02388, FemAB, FemAB family	NA|244aa|up_6|NZ_CP022720.1_2397246_2397978_-	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]	NA|240aa|up_5|NZ_CP022720.1_2397974_2398694_-	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|260aa|up_4|NZ_CP022720.1_2398674_2399454_-	cd13711, PBP2_Ngo0372_TcyA, Substrate binding domain of ABC transporters involved in cystine import; the type 2 periplasmic binding protein fold	NA|480aa|up_3|NZ_CP022720.1_2399574_2401014_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|35aa|up_2|NZ_CP022720.1_2401187_2401292_+	NA	NA|229aa|up_1|NZ_CP022720.1_2401445_2402132_-	PRK14119, gpmA, phosphoglyceromutase; Provisional	NA|289aa|up_0|NZ_CP022720.1_2402458_2403325_-	COG0053, MMT1, Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]	NA|40aa|down_0|NZ_CP022720.1_2403740_2403860_-	NA	NA|438aa|down_1|NZ_CP022720.1_2403954_2405268_+	pfam11621, Sbi-IV, C3 binding domain 4 of IgG-bind protein SBI	NA|310aa|down_2|NZ_CP022720.1_2405803_2406733_+	pfam07968, Leukocidin, Leukocidin/Hemolysin toxin family	NA|316aa|down_3|NZ_CP022720.1_2407299_2408247_+	pfam07968, Leukocidin, Leukocidin/Hemolysin toxin family	NA|326aa|down_4|NZ_CP022720.1_2408248_2409226_+	TIGR01002, synergohymenotropic_toxin, beta-channel forming cytolysin	NA|156aa|down_5|NZ_CP022720.1_2409277_2409745_-	pfam06177, QueT, QueT transporter	NA|231aa|down_6|NZ_CP022720.1_2409755_2410448_-	COG1424, BioW, Pimeloyl-CoA synthetase [Coenzyme metabolism]	NA|372aa|down_7|NZ_CP022720.1_2410458_2411574_-	COG0156, BioF, 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism]	NA|336aa|down_8|NZ_CP022720.1_2411551_2412559_-	PRK06256, PRK06256, biotin synthase; Validated	NA|453aa|down_9|NZ_CP022720.1_2412560_2413919_-	TIGR00508, hypothetical_protein_DESPIG_00326, adenosylmethionine-8-amino-7-oxononanoate transaminase
