The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP022720	Staphylococcus aureus strain 135 chromosome, complete genome	2730989	712438	720258	2730989		Hokovirus(16.67%)	10	NA	NA
WP_000244415.1|712438_713494_-	HAMP domain-containing histidine kinase	NA	A0A1V0SGX0	Hokovirus	29.8	3.6e-14
WP_000149344.1|713493_714180_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_001037807.1|714154_714628_-	DoxX family protein	NA	NA	NA	NA	NA
WP_001093561.1|714969_715410_-	DM13 domain-containing protein	NA	NA	NA	NA	NA
WP_000637687.1|715689_716274_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001062972.1|716372_717086_-	7-carboxy-7-deazaguanine synthase QueE	NA	A0A1U9WRB6	Streptococcus_virus	43.5	6.5e-52
WP_000941336.1|717089_717509_-	6-carboxytetrahydropterin synthase QueD	NA	S4U060	uncultured_phage	28.7	6.3e-07
WP_000446724.1|717510_718179_-	7-cyano-7-deazaguanine synthase QueC	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	57.5	9.6e-66
WP_000604515.1|718529_719123_+	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	43.5	1.2e-38
WP_001217794.1|719106_720258_+	anthranilate synthase component I family protein	NA	S4VNU7	Pandoravirus	36.1	3.5e-23
>prophage 2
NZ_CP022720	Staphylococcus aureus strain 135 chromosome, complete genome	2730989	732229	746848	2730989		uncultured_Caudovirales_phage(50.0%)	14	NA	NA
WP_000663026.1|732229_733288_+	histidinol-phosphate transaminase	NA	A0A0H3TLT9	Faustovirus	27.3	1.5e-20
WP_000197275.1|733638_734181_+	5'-3'-deoxyribonucleotidase	NA	NA	NA	NA	NA
WP_000429006.1|734804_735722_-	diacylglycerol kinase family lipid kinase	NA	A0A1V0SBJ0	Catovirus	22.0	2.1e-07
WP_031835073.1|735812_735914_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000193751.1|735991_737497_-	peptide MFS transporter	NA	A0A0P0IY73	Acinetobacter_phage	32.2	2.0e-58
WP_000930014.1|737837_738338_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	E7DN65	Pneumococcus_phage	71.5	5.9e-52
WP_001068497.1|738357_739224_-	DMT family transporter	NA	NA	NA	NA	NA
WP_000692521.1|740024_740423_+	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	A0A2H4J545	uncultured_Caudovirales_phage	72.0	1.2e-52
WP_000855505.1|740385_742491_+	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A0A2H4J2N6	uncultured_Caudovirales_phage	91.7	0.0e+00
WP_000562498.1|742608_743580_+	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	A0A2H4J4P3	uncultured_Caudovirales_phage	91.3	4.2e-171
WP_000499195.1|743981_744137_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000876318.1|744175_745147_+	ABC transporter permease	NA	A0A2H4IY97	uncultured_Caudovirales_phage	78.9	4.3e-139
WP_001245577.1|745133_746090_+	iron chelate uptake ABC transporter family permease subunit	NA	A0A2H4J116	uncultured_Caudovirales_phage	57.8	1.2e-05
WP_000616842.1|746086_746848_+	ABC transporter ATP-binding protein	NA	Q9EMR9	Amsacta_moorei_entomopoxvirus	31.6	8.5e-18
>prophage 3
NZ_CP022720	Staphylococcus aureus strain 135 chromosome, complete genome	2730989	921275	976983	2730989	transposase,bacteriocin,protease,tRNA	Streptococcus_phage(28.57%)	55	NA	NA
WP_000448934.1|921275_922265_-|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_000258003.1|922559_922955_+	transcriptional regulator Spx	NA	NA	NA	NA	NA
WP_115304429.1|923018_924665_-|transposase	IS1182 family transposase	transposase	A0ZS58	Staphylococcus_virus	97.3	6.1e-287
WP_001217728.1|925245_925965_+	adaptor protein MecA	NA	NA	NA	NA	NA
WP_000959289.1|926085_927072_+	competence protein CoiA	NA	NA	NA	NA	NA
WP_000082725.1|927119_928928_+	oligoendopeptidase F	NA	A0A1X9I5X5	Streptococcus_phage	24.5	5.5e-47
WP_115304430.1|929387_930194_-	DsbA family protein	NA	NA	NA	NA	NA
WP_000214069.1|930216_930582_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000224619.1|930685_931279_-	CYTH domain-containing protein	NA	NA	NA	NA	NA
WP_001242102.1|931464_931812_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001077683.1|931828_932464_+	GTP pyrophosphokinase family protein	NA	NA	NA	NA	NA
WP_001270834.1|932480_933290_+	NAD kinase	NA	NA	NA	NA	NA
WP_000669923.1|933286_934141_+	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_000062407.1|934161_935547_+	magnesium transporter	NA	NA	NA	NA	NA
WP_000395152.1|935556_937401_+	sodium:proton antiporter	NA	NA	NA	NA	NA
WP_000933195.1|937678_938449_+	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_000933105.1|938644_939730_-	AI-2E family transporter	NA	NA	NA	NA	NA
WP_000570700.1|940070_941639_+	alanine:cation symporter family protein	NA	NA	NA	NA	NA
WP_000889191.1|941783_942542_+	esterase family protein	NA	NA	NA	NA	NA
WP_000600387.1|942735_943245_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001794241.1|943357_944566_-	MFS transporter	NA	NA	NA	NA	NA
WP_000258650.1|944525_945701_-	diglucosyl diacylglycerol synthase	NA	NA	NA	NA	NA
WP_000340119.1|946133_947618_+	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L- lysine ligase	NA	NA	NA	NA	NA
WP_001795833.1|947598_947859_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001049951.1|947858_949421_+	peptide chain release factor 3	NA	A0A1S5SF82	Streptococcus_phage	28.2	1.7e-36
WP_000928413.1|949722_950526_+	TerC family protein	NA	S5MAL1	Bacillus_phage	40.5	1.6e-30
WP_000455278.1|950744_953069_+|protease	serine protease	protease	W5SAB9	Pithovirus	27.4	2.8e-11
WP_000021865.1|953085_954444_+	TrkH family potassium uptake protein	NA	NA	NA	NA	NA
WP_000414185.1|954582_956094_+	bifunctional metallophosphatase/5'-nucleotidase	NA	NA	NA	NA	NA
WP_000287265.1|956580_957150_-	competence protein ComK	NA	NA	NA	NA	NA
WP_000876826.1|957359_957578_+	IDEAL domain-containing protein	NA	NA	NA	NA	NA
WP_000668818.1|957658_958645_-	lipoate--protein ligase	NA	NA	NA	NA	NA
WP_000214898.1|958843_959020_+	YkvS family protein	NA	NA	NA	NA	NA
WP_001033865.1|959034_959637_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_031763719.1|960552_960654_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001797239.1|960663_960936_+|bacteriocin	lactococcin 972 family bacteriocin	bacteriocin	NA	NA	NA	NA
WP_000870832.1|960979_962944_+|bacteriocin	bacteriocin-associated integral membrane family protein	bacteriocin	NA	NA	NA	NA
WP_000668627.1|962946_963267_+	YxeA family protein	NA	NA	NA	NA	NA
WP_000571167.1|963263_963905_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.0	1.7e-19
WP_072361064.1|963992_964283_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000410720.1|964561_964849_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000719184.1|964854_966336_+	glycosyltransferase	NA	NA	NA	NA	NA
WP_000766009.1|966424_966781_-	DoxX family protein	NA	NA	NA	NA	NA
WP_001081344.1|967268_968228_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_020978112.1|968273_968405_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001788574.1|968468_968759_-	TM2 domain-containing protein	NA	A0A060AN66	Enterococcus_phage	38.0	7.5e-07
WP_000620949.1|968848_969400_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_103151798.1|969451_970390_-	1,4-dihydroxy-2-naphthoate polyprenyltransferase	NA	NA	NA	NA	NA
WP_001791731.1|970540_970645_+	hypothetical protein	NA	NA	NA	NA	NA
WP_072399156.1|970721_971933_+	isochorismate synthase	NA	NA	NA	NA	NA
WP_000526685.1|971919_973593_+	2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylic-acid synthase	NA	NA	NA	NA	NA
WP_000150223.1|973579_974383_+	2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylate synthase	NA	NA	NA	NA	NA
WP_000184947.1|974375_975197_+	1,4-dihydroxy-2-naphthoyl-CoA synthase	NA	NA	NA	NA	NA
WP_000284457.1|975434_975764_-	staphostatin B	NA	NA	NA	NA	NA
WP_001089097.1|975801_976983_-|protease	cysteine protease staphopain B	protease	NA	NA	NA	NA
>prophage 4
NZ_CP022720	Staphylococcus aureus strain 135 chromosome, complete genome	2730989	997156	1005629	2730989		Synechococcus_phage(33.33%)	9	NA	NA
WP_000861572.1|997156_997639_+	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	44.7	6.2e-22
WP_001010414.1|997625_998750_+	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA	NA
WP_000174044.1|998753_999458_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	M4R1E8	Synechococcus_phage	41.6	8.1e-47
WP_000848350.1|999457_999721_+	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
WP_000666806.1|999722_1000394_+	phosphoribosylformylglycinamidine synthase I	NA	NA	NA	NA	NA
WP_000032733.1|1000386_1002576_+	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	39.8	2.7e-141
WP_000483713.1|1002554_1004039_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	31.7	3.2e-45
WP_115304431.1|1004031_1005060_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	41.7	4.5e-62
WP_000238675.1|1005062_1005629_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	40.7	7.2e-30
>prophage 5
NZ_CP022720	Staphylococcus aureus strain 135 chromosome, complete genome	2730989	1446254	1533144	2730989	plate,holin,tRNA,portal,terminase,capsid,protease,head,integrase,tail	Staphylococcus_phage(70.27%)	99	1485939:1485956	1531661:1531678
WP_000858791.1|1446254_1447547_-|tRNA	asparagine--tRNA ligase	tRNA	A0A2P1EMB4	Moumouvirus	30.0	1.9e-54
WP_000525074.1|1447868_1450562_-	ATP-dependent helicase	NA	A0A1X9I5C8	Streptococcus_phage	34.4	8.2e-47
WP_000049921.1|1450585_1451557_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_000361532.1|1451543_1452746_-|tRNA	CCA tRNA nucleotidyltransferase	tRNA	H7BUW3	unidentified_phage	42.0	1.2e-34
WP_000690027.1|1452750_1453893_-	N-acetyl-alpha-D-glucosaminyl L-malate synthase BshA	NA	NA	NA	NA	NA
WP_000839931.1|1454133_1454451_-	nucleotide pyrophosphohydrolase	NA	NA	NA	NA	NA
WP_001827022.1|1454787_1455468_-	zinc metallopeptidase	NA	NA	NA	NA	NA
WP_000152734.1|1455539_1456127_-	DUF1405 domain-containing protein	NA	NA	NA	NA	NA
WP_000005213.1|1456116_1456692_-	IDEAL domain-containing protein	NA	G3MAV7	Bacillus_virus	27.2	2.7e-08
WP_011443634.1|1456705_1457809_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000245900.1|1457956_1459255_-	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
WP_000776326.1|1459264_1460329_-	3-dehydroquinate synthase	NA	NA	NA	NA	NA
WP_001269929.1|1460354_1461521_-	chorismate synthase	NA	A0A291AU41	Pandoravirus	32.1	7.6e-34
WP_000789522.1|1461906_1462107_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000442480.1|1462315_1462765_-	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.8	2.4e-28
WP_016169114.1|1462856_1463801_-	heptaprenyl diphosphate synthase component II	NA	A0A1V0SE37	Indivirus	24.4	1.3e-10
WP_000774684.1|1463817_1464543_-	demethylmenaquinone methyltransferase	NA	NA	NA	NA	NA
WP_000450555.1|1464545_1465118_-	heptaprenyl diphosphate synthase component 1	NA	NA	NA	NA	NA
WP_001043863.1|1465548_1465821_-	HU family DNA-binding protein	NA	A7KV42	Bacillus_phage	73.3	4.2e-28
WP_000161746.1|1465991_1466990_-	NAD(P)H-dependent glycerol-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_000165533.1|1467006_1468317_-	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_000133950.1|1468538_1469714_-	30S ribosomal protein S1	NA	NA	NA	NA	NA
WP_000644391.1|1470411_1471071_-	(d)CMP kinase	NA	NA	NA	NA	NA
WP_000681769.1|1471147_1472116_+	asparaginase	NA	NA	NA	NA	NA
WP_001174260.1|1472230_1473217_-	YpdA family putative bacillithiol disulfide reductase	NA	NA	NA	NA	NA
WP_031824588.1|1473377_1473494_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000069314.1|1473618_1475073_-	elastin-binding protein EbpS	NA	NA	NA	NA	NA
WP_000902122.1|1475225_1476605_-	ATP-dependent DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	33.3	3.8e-56
WP_001163805.1|1476594_1477548_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001151997.1|1477655_1477904_+	ferredoxin	NA	A0A127AYY7	Bacillus_phage	48.0	8.3e-15
WP_001186912.1|1478009_1478555_-	ECF transporter S component	NA	NA	NA	NA	NA
WP_000476341.1|1478956_1479889_-	DUF1672 domain-containing protein	NA	NA	NA	NA	NA
WP_000476338.1|1479945_1480863_-	DUF1672 domain-containing protein	NA	NA	NA	NA	NA
WP_000476867.1|1480920_1481826_-	DUF1672 domain-containing protein	NA	NA	NA	NA	NA
WP_078064398.1|1481916_1482279_-	hypothetical protein	NA	Q4ZCJ7	Staphylococcus_virus	100.0	3.4e-25
WP_000909210.1|1483952_1485407_-	CHAP domain-containing protein	NA	Q8SDN4	Staphylococcus_virus	99.8	7.5e-289
WP_000339144.1|1485417_1485720_-|holin	phage holin	holin	B7T0L0	Staphylococcus_virus	100.0	4.1e-48
WP_000466784.1|1485855_1486155_-	DUF2951 domain-containing protein	NA	A0A2I6PER2	Staphylococcus_phage	100.0	2.0e-31
1485939:1485956	attL	TGTCTCTAATATTTTTAG	NA	NA	NA	NA
WP_000916020.1|1486200_1486365_-	XkdX family protein	NA	A0A2I6PES4	Staphylococcus_phage	100.0	4.9e-24
WP_001166599.1|1486357_1486747_-	DUF2977 domain-containing protein	NA	A0A2I6PER1	Staphylococcus_phage	100.0	2.2e-62
WP_000067148.1|1486746_1488213_-|plate	BppU family phage baseplate upper protein	plate	Q8SDN8	Staphylococcus_virus	100.0	3.4e-257
WP_000429551.1|1488212_1490123_-	minor structural protein	NA	A0A2I6PF35	Staphylococcus_phage	100.0	0.0e+00
WP_000179862.1|1490138_1490429_-	hypothetical protein	NA	Q8SDP0	Staphylococcus_virus	100.0	2.1e-49
WP_000384462.1|1490428_1492012_-	peptidase	NA	Q8SDP1	Staphylococcus_virus	100.0	7.1e-309
WP_001190533.1|1492020_1492845_-|tail	phage tail family protein	tail	A0A2I6PER3	Staphylococcus_phage	100.0	4.1e-159
WP_000438833.1|1499057_1499216_-	hypothetical protein	NA	A0A2I6PES8	Staphylococcus_phage	100.0	1.2e-19
WP_000589165.1|1499257_1499608_-	hypothetical protein	NA	A0A2I6PDE6	Staphylococcus_phage	100.0	1.1e-55
WP_000169128.1|1499665_1500121_-	Ig domain-containing protein	NA	A0A2I6PF45	Staphylococcus_phage	100.0	1.3e-77
WP_000807536.1|1500212_1500854_-|tail	tail protein	tail	A0A2I6PEP6	Staphylococcus_phage	100.0	5.9e-121
WP_001023802.1|1500888_1501284_-	DUF3168 domain-containing protein	NA	A0A2I6PDD8	Staphylococcus_phage	100.0	2.6e-66
WP_000110020.1|1501284_1501686_-	hypothetical protein	NA	A0A2I6PDD3	Staphylococcus_phage	100.0	6.2e-68
WP_000395501.1|1501682_1502015_-	hypothetical protein	NA	A0A2I6PDD6	Staphylococcus_phage	100.0	6.2e-58
WP_000050973.1|1502026_1502305_-|head,tail	phage gp6-like head-tail connector protein	head,tail	A0A2I6PEQ1	Staphylococcus_phage	100.0	2.1e-46
WP_001142739.1|1502373_1503537_-|capsid	phage major capsid protein	capsid	A0A2I6PDD7	Staphylococcus_phage	100.0	9.4e-218
WP_000061872.1|1503548_1504322_-|protease	Clp protease ClpP	protease	M1TAZ4	Staphylococcus_phage	100.0	9.2e-137
WP_001100669.1|1504305_1505544_-|portal	phage portal protein	portal	A0A2K9VBP0	Staphylococcus_phage	100.0	6.9e-235
WP_043054673.1|1505548_1507240_-|terminase	terminase large subunit	terminase	A0A2I6PE44	Staphylococcus_phage	99.8	0.0e+00
WP_000778932.1|1507229_1507535_-|terminase	terminase	terminase	A0A2I6PE27	Staphylococcus_phage	100.0	2.9e-49
WP_000160689.1|1507663_1507978_-	HNH endonuclease	NA	A0A2I6PDC4	Staphylococcus_phage	100.0	2.5e-56
WP_000513703.1|1508134_1508572_-	transcriptional regulator	NA	A0A2K9VBV2	Staphylococcus_phage	99.3	7.9e-77
WP_001795330.1|1508584_1509952_-	DEAD/DEAH box helicase	NA	Q4ZCF6	Staphylococcus_virus	100.0	4.6e-264
WP_000665203.1|1509932_1510223_-	VRR-NUC domain-containing protein	NA	A0A2I6PEN7	Staphylococcus_phage	100.0	6.5e-51
WP_011447017.1|1510356_1510461_+	hypothetical protein	NA	Q4ZCF8	Staphylococcus_virus	100.0	9.4e-13
WP_000884854.1|1510563_1513011_-	hypothetical protein	NA	Q4ZCG0	Staphylococcus_virus	100.0	0.0e+00
WP_000265258.1|1513062_1513263_-	DUF1514 family protein	NA	A0A2I6PF41	Staphylococcus_phage	100.0	2.9e-26
WP_000595260.1|1513330_1513483_-	transcriptional activator RinB	NA	A7TWI2	Staphylococcus_phage	100.0	2.6e-19
WP_000195820.1|1513479_1513686_-	DUF1381 domain-containing protein	NA	A0A1X9H0C2	Staphylococcus_phage	100.0	1.3e-21
WP_001066444.1|1513722_1514259_-	hypothetical protein	NA	A0A1X9H0S5	Staphylococcus_phage	100.0	1.4e-96
WP_000197967.1|1514251_1514662_-	hypothetical protein	NA	C8CH13	Staphylococcus_phage	100.0	2.3e-70
WP_031868690.1|1514658_1515192_-	hypothetical protein	NA	A0A1X9H0D4	Staphylococcus_phage	96.1	8.5e-81
WP_000979209.1|1515188_1515536_-	hypothetical protein	NA	D2JGL4	Staphylococcus_phage	100.0	5.9e-59
WP_000695759.1|1515532_1515934_-	hypothetical protein	NA	A0A0N7E0T5	Staphylococcus_phage	100.0	7.0e-72
WP_000693987.1|1515936_1516143_-	hypothetical protein	NA	A0A0N9BAW9	Staphylococcus_phage	100.0	3.0e-34
WP_015968801.1|1516156_1516405_-	PVL orf 51-like protein	NA	Q8SDR2	Staphylococcus_virus	100.0	1.8e-41
WP_000235381.1|1516413_1516614_-	hypothetical protein	NA	A0A2I6PF32	Staphylococcus_phage	100.0	1.3e-29
WP_000111488.1|1516616_1516874_-	DUF3310 domain-containing protein	NA	A0A2I6PF10	Staphylococcus_phage	100.0	5.7e-43
WP_000113981.1|1516873_1517275_-	PVL family protein	NA	A0A2I6PF14	Staphylococcus_phage	100.0	1.2e-68
WP_001164629.1|1517274_1517460_-	DUF3113 family protein	NA	A0A2I6PEM8	Staphylococcus_phage	100.0	7.0e-27
WP_001796208.1|1517472_1519425_-	DNA polymerase	NA	A0A2I6PF18	Staphylococcus_phage	100.0	0.0e+00
WP_000645042.1|1519493_1520051_-	DUF2815 family protein	NA	A0A2I6PF05	Staphylococcus_phage	100.0	1.8e-97
WP_000762532.1|1520076_1521243_-	DUF2800 domain-containing protein	NA	A0A2I6PDL4	Staphylococcus_phage	100.0	8.3e-222
WP_000279445.1|1521239_1521602_-	hypothetical protein	NA	A0A2K9VBV1	Staphylococcus_phage	100.0	6.4e-56
WP_000175003.1|1521616_1521940_-	hypothetical protein	NA	A7TWG2	Staphylococcus_phage	99.1	2.5e-51
WP_000066008.1|1522018_1522180_-	DUF1270 family protein	NA	A0A2I6PDF7	Staphylococcus_phage	96.2	1.2e-19
WP_001124198.1|1522191_1522455_-	helix-turn-helix domain-containing protein	NA	A0A2I6PEL8	Staphylococcus_phage	100.0	2.5e-46
WP_001036303.1|1522479_1522695_-	hypothetical protein	NA	A0A2I6PDN5	Staphylococcus_phage	95.8	5.5e-31
WP_000549549.1|1522750_1522981_+	hypothetical protein	NA	A0A2I6PE22	Staphylococcus_phage	97.4	1.8e-35
WP_001115060.1|1523242_1523434_-	helix-turn-helix transcriptional regulator	NA	A0A2I6PEL6	Staphylococcus_phage	100.0	2.3e-28
WP_000429766.1|1523594_1523924_+	helix-turn-helix transcriptional regulator	NA	A0A2I6PEN2	Staphylococcus_phage	100.0	3.2e-54
WP_000524999.1|1523936_1524398_+	hypothetical protein	NA	A0A2I6PEK4	Staphylococcus_phage	98.7	3.7e-85
WP_000755721.1|1524415_1524850_+	hypothetical protein	NA	A0A2I6PEM0	Staphylococcus_phage	100.0	1.2e-24
WP_000449657.1|1524878_1525274_+	hypothetical protein	NA	A0A2I6PEJ7	Staphylococcus_phage	99.2	1.1e-69
WP_001013104.1|1525363_1525510_+	hypothetical protein	NA	A0A2I6PEK8	Staphylococcus_phage	89.6	1.1e-14
WP_000191458.1|1525506_1526121_-	hypothetical protein	NA	A7TW88	Staphylococcus_phage	99.5	8.8e-106
WP_000264751.1|1526246_1527452_+|integrase	site-specific integrase	integrase	A0A2I6PEN0	Staphylococcus_phage	100.0	7.7e-223
WP_001802420.1|1527494_1529522_-	hypothetical protein	NA	B5WZK7	Staphylococcus_phage	95.8	4.2e-112
WP_001641538.1|1529533_1530442_-	DUF1672 domain-containing protein	NA	NA	NA	NA	NA
WP_000987769.1|1530686_1532438_-	HAMP domain-containing protein	NA	A0A1V0SGX0	Hokovirus	33.6	1.7e-21
1531661:1531678	attR	TGTCTCTAATATTTTTAG	NA	NA	NA	NA
WP_000064078.1|1532418_1533144_-	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	43.0	3.5e-45
>prophage 6
NZ_CP022720	Staphylococcus aureus strain 135 chromosome, complete genome	2730989	1591965	1600295	2730989	tRNA	Staphylococcus_phage(16.67%)	7	NA	NA
WP_001213908.1|1591965_1592751_-	metal ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.3	8.0e-19
WP_000924220.1|1592876_1593767_-	deoxyribonuclease IV	NA	A0A2H4UU70	Bodo_saltans_virus	36.0	3.4e-26
WP_001062183.1|1593776_1595123_-	DEAD/DEAH box helicase	NA	A0A1V0SIR5	Klosneuvirus	34.0	1.8e-55
WP_000683933.1|1595236_1596337_-	Nif3-like dinuclear metal center hexameric protein	NA	A0A1S5V250	Saudi_moumouvirus	29.6	5.2e-08
WP_000624583.1|1596339_1597017_-|tRNA	tRNA (adenine-N(1))-methyltransferase	tRNA	NA	NA	NA	NA
WP_001283055.1|1597147_1598254_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	38.1	1.1e-37
WP_001217252.1|1598477_1600295_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	36.0	3.6e-54
>prophage 7
NZ_CP022720	Staphylococcus aureus strain 135 chromosome, complete genome	2730989	1668149	1677192	2730989	tRNA	uncultured_Mediterranean_phage(50.0%)	7	NA	NA
WP_000364542.1|1668149_1668668_-	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	46.5	5.6e-29
WP_000594993.1|1668689_1670963_-	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	28.8	1.2e-62
WP_000749789.1|1671165_1673445_-	protein translocase subunit SecDF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.8	1.8e-31
WP_001160682.1|1673719_1673980_-	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	35.3	8.2e-05
WP_001112045.1|1673998_1675138_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.7	5.4e-85
WP_001019172.1|1675160_1676186_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_001005769.1|1676187_1677192_-	Holliday junction branch migration DNA helicase RuvB	NA	B3GAM6	uncultured_virus	29.1	1.7e-05
>prophage 8
NZ_CP022720	Staphylococcus aureus strain 135 chromosome, complete genome	2730989	1801708	1874849	2730989	protease,tRNA	Staphylococcus_phage(94.12%)	71	NA	NA
WP_001641584.1|1801708_1808269_-	LPXTG-anchored repetitive surface protein SasC	NA	A0A2H4PQU6	Staphylococcus_phage	97.1	1.3e-300
WP_000836465.1|1808594_1808906_-	rhodanese-like domain-containing protein	NA	A0A2H4PQR9	Staphylococcus_phage	100.0	1.6e-52
WP_001108730.1|1808927_1811342_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	99.5	0.0e+00
WP_001025061.1|1811632_1812814_-	MFS transporter	NA	A0A2H4PQR6	Staphylococcus_phage	100.0	5.6e-218
WP_000526539.1|1812923_1813877_+	TIGR01212 family radical SAM protein	NA	A0A2H4PQV5	Staphylococcus_phage	100.0	2.2e-79
WP_000764419.1|1813873_1814437_+	methyltransferase domain-containing protein	NA	A0A2H4PQV0	Staphylococcus_phage	99.5	8.3e-103
WP_000757543.1|1814556_1814958_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000266096.1|1815529_1816357_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_001790712.1|1816359_1816479_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001196360.1|1816590_1817592_+	proline dehydrogenase	NA	A0A2H4PQT6	Staphylococcus_phage	99.1	7.7e-184
WP_001008551.1|1817713_1818178_-	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	99.4	5.8e-70
WP_001175484.1|1818190_1819372_-	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	NA	A0A2H4PQS2	Staphylococcus_phage	99.7	1.5e-226
WP_000493886.1|1819382_1820015_-	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	99.0	6.4e-112
WP_000384181.1|1820021_1821053_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	99.4	4.8e-197
WP_001261679.1|1821545_1823048_-	FAD-dependent oxidoreductase	NA	A0A2H4PQX2	Staphylococcus_phage	100.0	2.3e-30
WP_000221179.1|1823570_1823885_+	winged helix-turn-helix transcriptional regulator	NA	A0A2H4PQT4	Staphylococcus_phage	100.0	2.0e-53
WP_000989121.1|1823884_1825177_+	arsenite efflux transporter membrane subunit ArsB	NA	A0A2H4PQU3	Staphylococcus_phage	99.5	5.0e-228
WP_000163236.1|1825194_1825590_+	arsenate reductase (thioredoxin)	NA	A0A2H4PQT9	Staphylococcus_phage	99.2	3.1e-72
WP_001032833.1|1825884_1826739_-	autolysin	NA	Q4ZCC7	Staphylococcus_virus	38.6	9.8e-39
WP_000384171.1|1827014_1827239_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000671057.1|1827437_1827908_+	RNA polymerase sigma factor	NA	A0A2H4PQT5	Staphylococcus_phage	98.1	8.8e-82
WP_001153745.1|1828020_1828464_+	competence protein ComK	NA	NA	NA	NA	NA
WP_001030469.1|1828450_1828894_-	hypothetical protein	NA	A0A2H4PQT8	Staphylococcus_phage	98.6	2.4e-57
WP_001168904.1|1829189_1829825_+|protease	CPBP family intramembrane metalloprotease SdpA	protease	NA	NA	NA	NA
WP_001096494.1|1830264_1830978_-	transaldolase	NA	M1PR54	Cyanophage	35.3	5.5e-19
WP_000091445.1|1831237_1831540_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001200542.1|1831795_1832161_+	fluoride efflux transporter CrcB	NA	A0A2H4PQR0	Staphylococcus_phage	100.0	3.6e-59
WP_000623471.1|1832157_1832511_+	CrcB family protein	NA	A0A2H4PQQ7	Staphylococcus_phage	99.1	1.0e-21
WP_000453317.1|1834608_1835442_-	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	99.6	3.5e-158
WP_000366155.1|1835653_1836562_-	NERD domain-containing protein	NA	A0A2H4PQQ8	Staphylococcus_phage	99.0	1.7e-137
WP_000933822.1|1836686_1837880_-	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	99.7	1.9e-218
WP_000109906.1|1838251_1839844_+	phosphoenolpyruvate carboxykinase (ATP)	NA	A0A2H4PQN1	Staphylococcus_phage	100.0	0.0e+00
WP_001834463.1|1840221_1840968_-	S9 family peptidase	NA	A0A2H4PQM6	Staphylococcus_phage	98.8	1.4e-142
WP_000672015.1|1840972_1841446_-	nucleoside triphosphatase YtkD	NA	A0A2H4PQM4	Staphylococcus_phage	99.4	5.5e-84
WP_000718107.1|1841511_1841769_+	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	100.0	7.2e-46
WP_000778538.1|1841765_1842767_-	o-succinylbenzoate synthase	NA	A0A2H4PQM0	Staphylococcus_phage	97.0	9.0e-185
WP_000348365.1|1842771_1844250_-	o-succinylbenzoate--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	97.6	2.8e-283
WP_072414246.1|1844408_1844864_-	DUF4909 domain-containing protein	NA	A0A2H4PQN7	Staphylococcus_phage	98.6	1.5e-78
WP_001795535.1|1845166_1845817_+	calcium-binding protein	NA	A0A2H4PQM8	Staphylococcus_phage	88.4	2.7e-44
WP_000070655.1|1845897_1846893_+	DUF4352 domain-containing protein	NA	A0A2H4PQN2	Staphylococcus_phage	98.8	6.2e-77
WP_000669027.1|1846968_1847595_+	hypothetical protein	NA	A0A2H4PQM7	Staphylococcus_phage	93.8	5.3e-90
WP_000627537.1|1847635_1847977_+	DUF3969 family protein	NA	A0A2H4PQN6	Staphylococcus_phage	95.6	3.0e-55
WP_000414214.1|1848077_1848650_+	hypothetical protein	NA	A0A2H4PQN4	Staphylococcus_phage	96.6	1.1e-25
WP_000864136.1|1848847_1849405_-	ImmA/IrrE family metallo-endopeptidase	NA	A0A2H4PQN8	Staphylococcus_phage	96.8	3.7e-79
WP_000375476.1|1849775_1849952_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000731412.1|1851059_1851503_-	DUF1433 domain-containing protein	NA	NA	NA	NA	NA
WP_000731418.1|1851502_1851946_-	DUF1433 domain-containing protein	NA	NA	NA	NA	NA
WP_000745473.1|1851945_1852389_-	DUF1433 domain-containing protein	NA	NA	NA	NA	NA
WP_000221410.1|1852927_1855351_+	polysaccharide lyase 8 family protein	NA	NA	NA	NA	NA
WP_072414244.1|1855474_1855834_-	DUF1433 domain-containing protein	NA	NA	NA	NA	NA
WP_000759947.1|1856057_1856498_-	DUF1433 domain-containing protein	NA	NA	NA	NA	NA
WP_000926706.1|1856542_1858156_+	lipase	NA	NA	NA	NA	NA
WP_000095395.1|1858170_1858470_+	secretion protein	NA	NA	NA	NA	NA
WP_000072556.1|1858596_1859832_-	restriction endonuclease subunit S	NA	A0A2H4PQP5	Staphylococcus_phage	37.2	6.4e-47
WP_000028658.1|1859824_1861381_-	type I restriction-modification system subunit M	NA	A0A2H4PQP4	Staphylococcus_phage	99.0	3.4e-287
WP_031835054.1|1861544_1861679_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001038693.1|1861745_1862465_-|protease	serine protease SplF	protease	A0A2H4PQP1	Staphylococcus_phage	99.2	1.2e-130
WP_001038760.1|1862615_1863332_-|protease	serine protease SplE	protease	A0A2H4PQN5	Staphylococcus_phage	99.6	3.2e-131
WP_103150108.1|1863433_1863541_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001038723.1|1863489_1864209_-|protease	serine protease SplD	protease	A0A2H4PQP9	Staphylococcus_phage	97.9	4.3e-128
WP_001038866.1|1864329_1865049_-|protease	serine protease SplC	protease	A0A2H4PQP7	Staphylococcus_phage	98.7	3.5e-130
WP_001039455.1|1865106_1865829_-|protease	serine protease SplB	protease	A0A2H4PQN0	Staphylococcus_phage	99.2	1.2e-130
WP_025174851.1|1865953_1866661_-|protease	serine protease SplA	protease	A0A2H4PQN3	Staphylococcus_phage	95.7	2.4e-123
WP_001092783.1|1867624_1868194_+	DUF4888 domain-containing protein	NA	A0A2H4PQH6	Staphylococcus_phage	62.6	2.6e-51
WP_025174387.1|1868665_1868884_-	hypothetical protein	NA	A0A2H4PQH0	Staphylococcus_phage	80.6	9.2e-26
WP_000550254.1|1869139_1869613_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000543848.1|1869617_1870409_+	DUF1828 domain-containing protein	NA	NA	NA	NA	NA
WP_000782463.1|1870778_1871762_-	bi-component leukocidin LukED subunit D	NA	A0A2H4PQH7	Staphylococcus_phage	99.4	1.8e-185
WP_000473596.1|1871763_1872699_-	beta-channel forming cytolysin	NA	A0A2H4PQI5	Staphylococcus_phage	100.0	1.4e-174
WP_001086053.1|1873592_1874048_+	hypothetical protein	NA	Q4ZCB9	Staphylococcus_virus	76.8	1.7e-61
WP_000206349.1|1874060_1874849_+	DUF1828 domain-containing protein	NA	A0A2H4PQI0	Staphylococcus_phage	95.0	1.0e-138
>prophage 9
NZ_CP022720	Staphylococcus aureus strain 135 chromosome, complete genome	2730989	1999411	2005090	2730989		Staphylococcus_phage(100.0%)	6	NA	NA
WP_000669789.1|1999411_1999591_+	hypothetical protein	NA	A0A1W6JQ29	Staphylococcus_phage	100.0	2.2e-25
WP_001791826.1|1999901_2000162_+	hypothetical protein	NA	M9NS66	Staphylococcus_phage	100.0	2.3e-23
WP_000702262.1|2000214_2000565_-	complement inhibitor SCIN-A	NA	A7TWS0	Staphylococcus_phage	100.0	7.5e-54
WP_000727643.1|2001247_2001697_+	chemotaxis-inhibiting protein CHIPS	NA	A7TWR9	Staphylococcus_phage	100.0	1.5e-78
WP_000595392.1|2002996_2004013_-	bi-component leukocidin LukGH subunit G	NA	A0A1X9IGW5	Staphylococcus_phage	30.2	6.7e-26
WP_000791411.1|2004034_2005090_-	bi-component leukocidin LukGH subunit H	NA	A0A1X9IGW5	Staphylococcus_phage	34.3	2.8e-35
>prophage 1
NZ_CP022721	Staphylococcus aureus strain 135 plasmid pPS00087.1A.1, complete sequence	20730	0	17687	20730		Streptococcus_phage(20.0%)	20	NA	NA
WP_000122363.1|863_1169_+	recombinase	NA	NA	NA	NA	NA
WP_000390798.1|1193_1493_+	recombinase	NA	NA	NA	NA	NA
WP_000273005.1|1586_2132_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000145511.1|2515_3376_+	replication initiation protein	NA	NA	NA	NA	NA
WP_000761341.1|3462_3804_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_106873653.1|4042_4114_-	type I toxin-antitoxin system Fst family toxin	NA	NA	NA	NA	NA
WP_000466619.1|4262_4448_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000843758.1|4666_5410_-	DUF536 domain-containing protein	NA	NA	NA	NA	NA
WP_001641725.1|5820_6096_+	replication initiation protein	NA	NA	NA	NA	NA
WP_001789670.1|6383_6497_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000616820.1|8000_8618_+	cadmium resistance transporter CadD	NA	NA	NA	NA	NA
WP_000119691.1|8636_8984_+	helix-turn-helix transcriptional regulator	NA	E4ZFI8	Streptococcus_phage	36.8	6.4e-13
WP_001791613.1|9152_9245_+	type I toxin-antitoxin system Fst family toxin	NA	NA	NA	NA	NA
WP_000072391.1|9456_10431_+	DUF4062 domain-containing protein	NA	NA	NA	NA	NA
WP_000164958.1|10550_11366_-	AAA family ATPase	NA	A0A0M3LP72	Mannheimia_phage	29.8	4.0e-05
WP_000690638.1|12773_13367_-	recombinase family protein	NA	A0A0A7NPV4	Enterobacteria_phage	51.1	1.5e-41
WP_001284653.1|13630_14011_-	penicillinase repressor BlaI	NA	NA	NA	NA	NA
WP_001096385.1|14000_15758_-	beta-lactam sensor/signal transducer BlaR1	NA	NA	NA	NA	NA
WP_000733289.1|15864_16710_+	penicillin-hydrolyzing class A beta-lactamase BlaZ	NA	A0A1B0VBP7	Salmonella_phage	34.4	1.2e-31
WP_001566953.1|17078_17687_+	recombinase family protein	NA	E5FFF9	Burkholderia_phage	28.5	6.2e-11
