The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP025838	Streptococcus pneumoniae strain SPN XDR SMC1710-32 chromosome, complete genome	2057144	7088	16738	2057144	integrase	Streptococcus_phage(55.56%)	14	3142:3156	16804:16818
3142:3156	attL	TCCCTTTTTGTGTTA	NA	NA	NA	NA
WP_000434362.1|7088_8558_-	DNA primase	NA	Q9AZI5	Lactococcus_phage	34.5	6.8e-64
WP_000158204.1|8610_9471_-	hypothetical protein	NA	A0A1X9I6L2	Streptococcus_phage	74.5	6.5e-123
WP_000492143.1|9610_9886_-	hypothetical protein	NA	A0A1X9I5U9	Streptococcus_phage	56.8	5.6e-20
WP_000058847.1|9878_10220_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000122653.1|10200_10494_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001003747.1|10490_10706_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000171245.1|10707_10908_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001812970.1|10904_11300_-	hypothetical protein	NA	A7J274	Streptococcus_phage	34.8	1.3e-06
WP_000424667.1|11808_12435_-	Rha family transcriptional regulator	NA	R9QNB1	Lactococcus_phage	40.8	6.1e-30
WP_000438800.1|12524_12758_-	helix-turn-helix transcriptional regulator	NA	Q38329	Lactococcus_phage	50.0	6.4e-09
WP_001107586.1|12914_13871_+	helix-turn-helix transcriptional regulator	NA	A0A060QNS7	Streptococcus_phage	41.0	5.5e-14
WP_000131181.1|14019_15024_+	hypothetical protein	NA	Q331X4	Clostridium_botulinum_C_phage	28.9	3.4e-14
WP_000357940.1|15023_15476_+	type II toxin-antitoxin system death-on-curing family toxin	NA	NA	NA	NA	NA
WP_000704684.1|15571_16738_+|integrase	site-specific integrase	integrase	A0A1X9I5Y5	Streptococcus_phage	51.5	5.9e-103
16804:16818	attR	TCCCTTTTTGTGTTA	NA	NA	NA	NA
>prophage 2
NZ_CP025838	Streptococcus pneumoniae strain SPN XDR SMC1710-32 chromosome, complete genome	2057144	58910	70366	2057144		Cyanophage(33.33%)	7	NA	NA
WP_000668299.1|58910_61064_+	peptide cleavage/export ABC transporter	NA	W8CYL7	Bacillus_phage	28.2	4.2e-46
WP_000801603.1|61076_62426_+	HlyD family secretion protein	NA	NA	NA	NA	NA
WP_000043304.1|62595_63303_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	A0A1D7SE76	Cyanophage	40.1	2.7e-42
WP_000361164.1|63504_67230_+	phosphoribosylformylglycinamidine synthase	NA	A6N228	Microbacterium_phage	25.6	3.6e-37
WP_000220632.1|67322_68765_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	35.1	5.7e-55
WP_000182575.1|68801_69824_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	A0A1D7SE90	Cyanophage	43.9	1.2e-64
WP_000717506.1|69820_70366_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	35.0	7.4e-24
>prophage 3
NZ_CP025838	Streptococcus pneumoniae strain SPN XDR SMC1710-32 chromosome, complete genome	2057144	124765	156679	2057144	tRNA,bacteriocin	Streptococcus_phage(50.0%)	30	NA	NA
WP_100910945.1|124765_125050_+|bacteriocin	lactococcin 972 family bacteriocin	bacteriocin	NA	NA	NA	NA
WP_100910946.1|125104_127213_+|bacteriocin	bacteriocin-associated integral membrane family protein	bacteriocin	NA	NA	NA	NA
WP_000571330.1|127209_127851_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	34.8	4.3e-23
WP_001038484.1|128057_128864_+	transporter substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_001810177.1|128880_130077_+	argininosuccinate synthase	NA	NA	NA	NA	NA
WP_115259262.1|131213_132077_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_001818085.1|132542_134762_+	peptidase domain-containing ABC transporter	NA	F2Y302	Organic_Lake_phycodnavirus	31.9	1.1e-20
WP_001096141.1|134754_135222_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000781019.1|135218_136571_+	HlyD family efflux transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_000420335.1|136718_137024_+|bacteriocin	SPAR17_0115 family bacteriocin-like peptide	bacteriocin	NA	NA	NA	NA
WP_000424408.1|137357_137711_+	hypothetical protein	NA	NA	NA	NA	NA
WP_162797806.1|137707_138436_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000989850.1|138589_138802_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000513492.1|139280_139526_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001810284.1|139682_140741_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001810285.1|141055_142033_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000424473.1|142409_142784_+|bacteriocin	SPH_0224 family bacteriocin-like peptide	bacteriocin	NA	NA	NA	NA
WP_000511666.1|142790_142973_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000619777.1|142991_143894_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000366643.1|143949_144303_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000072912.1|144299_145028_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000770312.1|146160_146400_+	hypothetical protein	NA	M1Q0Z8	Streptococcus_phage	51.4	4.0e-14
WP_001810010.1|146384_146663_+	hypothetical protein	NA	M1Q0Z8	Streptococcus_phage	50.5	1.1e-20
WP_115259264.1|146948_149189_+	cell surface protein	NA	NA	NA	NA	NA
WP_001282967.1|149589_150711_+|tRNA	tRNA 2-thiouridine(34) synthase MnmA	tRNA	NA	NA	NA	NA
WP_050078531.1|150851_151307_+	NUDIX hydrolase	NA	NA	NA	NA	NA
WP_000220946.1|151316_153230_+|tRNA	tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG	tRNA	NA	NA	NA	NA
WP_000639577.1|155288_155522_-	DNA-dependent RNA polymerase auxiliary subunit epsilon family protein	NA	NA	NA	NA	NA
WP_000977347.1|156339_156492_-|bacteriocin	fratricide two-peptide bacteriocin subunit CibB	bacteriocin	NA	NA	NA	NA
WP_000180803.1|156493_156679_-|bacteriocin	fratricide two-peptide bacteriocin subunit CibA	bacteriocin	NA	NA	NA	NA
>prophage 4
NZ_CP025838	Streptococcus pneumoniae strain SPN XDR SMC1710-32 chromosome, complete genome	2057144	284176	358520	2057144	integrase,holin,protease,transposase	Streptococcus_phage(30.77%)	60	285615:285648	365330:365363
WP_000530081.1|284176_285433_-|transposase	ISL3 family transposase	transposase	A0A1S5SBP9	Streptococcus_phage	97.1	4.5e-234
285615:285648	attL	ATACTCTTCGAAAATCTCTTCAAACCACGTCAGC	NA	NA	NA	NA
WP_000886031.1|285717_286035_-	DUF960 domain-containing protein	NA	NA	NA	NA	NA
WP_001044624.1|286390_286837_+	50S ribosomal protein L13	NA	NA	NA	NA	NA
WP_000075973.1|286855_287248_+	30S ribosomal protein S9	NA	NA	NA	NA	NA
WP_162797807.1|287459_287882_-|integrase	tyrosine-type recombinase/integrase	integrase	A0A0P0I3D2	Lactobacillus_phage	38.8	6.0e-05
WP_078139270.1|289191_290442_+	glycoside hydrolase family 31 protein	NA	NA	NA	NA	NA
WP_000203063.1|290663_291140_-	glutathione peroxidase	NA	Q70H87	Fowlpox_virus	33.5	6.3e-19
WP_001193713.1|291362_294566_+	LPXTG-anchored hyaluronate lyase	NA	NA	NA	NA	NA
WP_000167295.1|295709_296339_-	bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase	NA	NA	NA	NA	NA
WP_000161480.1|296348_297350_-	sugar kinase	NA	NA	NA	NA	NA
WP_000684786.1|297380_298022_-	RpiB/LacA/LacB family sugar-phosphate isomerase	NA	NA	NA	NA	NA
WP_000706826.1|299125_299560_+	PTS sugar transporter subunit IIA	NA	NA	NA	NA	NA
WP_000592943.1|299571_300762_+	unsaturated chondroitin disaccharide hydrolase	NA	NA	NA	NA	NA
WP_000178622.1|300772_301264_+	PTS system mannose/fructose/N-acetylgalactosamine-transporter subunit IIB	NA	NA	NA	NA	NA
WP_000026610.1|301278_302058_+	PTS mannose/fructose/sorbose/N-acetylgalactosamine transporter subunit IIC	NA	NA	NA	NA	NA
WP_000148012.1|302044_302863_+	PTS mannose/fructose/sorbose transporter family subunit IID	NA	NA	NA	NA	NA
WP_000381739.1|302862_303156_+	preprotein translocase subunit YajC	NA	NA	NA	NA	NA
WP_000657078.1|303177_305079_+	alginate lyase family protein	NA	NA	NA	NA	NA
WP_000412453.1|305138_306140_+	LacI family DNA-binding transcriptional regulator	NA	C6ZCU4	Enterobacteria_phage	23.8	3.1e-07
WP_000838117.1|306249_306585_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000711739.1|306595_306838_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001082474.1|306853_307048_-	helix-turn-helix transcriptional regulator	NA	A0A142LP09	Marinitoga_camini_virus	37.1	7.2e-06
WP_000159418.1|307213_308164_+	16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH	NA	NA	NA	NA	NA
WP_000818547.1|308175_308493_+	cell division protein FtsL	NA	NA	NA	NA	NA
WP_100910957.1|308496_310749_+	PASTA domain-containing protein	NA	NA	NA	NA	NA
WP_100910958.1|310750_311731_+	phospho-N-acetylmuramoyl-pentapeptide- transferase	NA	NA	NA	NA	NA
WP_054376650.1|312294_314400_+|protease	ATP-dependent Clp protease ATP-binding subunit	protease	H6X3M6	Enterobacteria_phage	37.7	1.0e-116
WP_000032552.1|315261_315744_-	S-ribosylhomocysteine lyase	NA	NA	NA	NA	NA
WP_000743570.1|315838_317323_-	DUF1846 domain-containing protein	NA	NA	NA	NA	NA
WP_115259277.1|317475_319083_+	alpha-glucosidase	NA	NA	NA	NA	NA
WP_001022228.1|319241_319415_+	S-ribosylhomocysteinase	NA	NA	NA	NA	NA
WP_115259279.1|320151_321597_+	LCP family protein	NA	A0A1X9I5X1	Streptococcus_phage	59.4	8.9e-133
WP_000567604.1|321598_322330_+	tyrosine protein phosphatase	NA	NA	NA	NA	NA
WP_000392514.1|322338_323031_+	capsular polysaccharide biosynthesis protein CpsC	NA	A0A1X9I5E1	Streptococcus_phage	56.3	1.6e-63
WP_001142531.1|323040_323730_+	tyrosine-protein kinase	NA	A0A1X9I5D6	Streptococcus_phage	62.8	2.9e-73
WP_115259281.1|323744_325112_+	sugar transferase	NA	NA	NA	NA	NA
WP_000686638.1|325115_325565_+	UDP-N-acetylglucosamine--LPS N-acetylglucosamine transferase	NA	NA	NA	NA	NA
WP_000578432.1|325564_326071_+	multidrug MFS transporter	NA	NA	NA	NA	NA
WP_000170479.1|326063_327263_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000405438.1|327264_328293_+	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_000389755.1|328300_329257_+	glycosyltransferase	NA	A0A1V0SAH6	Catovirus	36.4	2.9e-15
WP_000570495.1|329272_330181_+	capsular polysaccharide biosynthesis protein	NA	NA	NA	NA	NA
WP_000066241.1|330185_331649_+	flippase	NA	NA	NA	NA	NA
WP_000261151.1|332842_333991_+	CDP-glycerol--glycerophosphate glycerophosphotransferase	NA	NA	NA	NA	NA
WP_000794264.1|334026_335055_+	iron-containing alcohol dehydrogenase family protein	NA	NA	NA	NA	NA
WP_000645464.1|335070_335775_+|holin	phosphocholine cytidylyltransferase family protein	holin	NA	NA	NA	NA
WP_000779206.1|335789_336623_+	HAD-IIA family hydrolase	NA	NA	NA	NA	NA
WP_000842576.1|337422_339405_+	peptide ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_115259283.1|339705_345009_+	YSIRK-type signal peptide-containing protein	NA	NA	NA	NA	NA
WP_115259285.1|345176_347345_-	PBP1A family penicillin-binding protein	NA	NA	NA	NA	NA
WP_100910964.1|347341_347938_-	Holliday junction resolvase RecU	NA	R9TMF8	Paenibacillus_phage	34.9	2.6e-22
WP_000179549.1|348004_348532_+	DUF1273 domain-containing protein	NA	NA	NA	NA	NA
WP_000200645.1|348601_348943_+	cell division regulator GpsB	NA	NA	NA	NA	NA
WP_000711414.1|349428_350586_+	class I SAM-dependent RNA methyltransferase	NA	NA	NA	NA	NA
WP_000039255.1|350598_351993_+	mid-cell-anchored protein MapZ	NA	NA	NA	NA	NA
WP_000158793.1|352068_353493_+	NADP-dependent phosphogluconate dehydrogenase	NA	M4QQM4	Ostreococcus_lucimarinus_virus	29.6	2.1e-41
WP_000518008.1|353504_354194_+	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	26.1	1.3e-12
WP_000771053.1|354292_355291_+|holin	choline-binding protein CbpJ	holin	NA	NA	NA	NA
WP_000765684.1|355408_356641_-	MFS transporter	NA	NA	NA	NA	NA
WP_000619581.1|358190_358520_+|transposase	transposase	transposase	NA	NA	NA	NA
365330:365363	attR	ATACTCTTCGAAAATCTCTTCAAACCACGTCAGC	NA	NA	NA	NA
>prophage 5
NZ_CP025838	Streptococcus pneumoniae strain SPN XDR SMC1710-32 chromosome, complete genome	2057144	416167	525182	2057144	tRNA,protease,bacteriocin,transposase	Bacillus_phage(10.53%)	99	NA	NA
WP_115259293.1|416167_417304_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
WP_000280773.1|417559_418405_+	undecaprenyl-diphosphate phosphatase	NA	NA	NA	NA	NA
WP_000904591.1|418551_419613_-	DNA polymerase IV	NA	I6RSM4	Salmonella_phage	29.7	3.6e-14
WP_000260644.1|419960_422285_+	formate C-acetyltransferase	NA	A0A2P0VNR5	Tetraselmis_virus	32.9	1.3e-114
WP_001811329.1|422651_422867_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000384133.1|423196_423481_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001809505.1|424092_424263_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_074186948.1|425022_425280_+	PTS mannose transporter subunit IIA	NA	NA	NA	NA	NA
WP_115259295.1|425404_426844_-	TrkH family potassium uptake protein	NA	NA	NA	NA	NA
WP_000691685.1|426847_428197_-	Trk system potassium transporter TrkA	NA	NA	NA	NA	NA
WP_001063601.1|428384_429233_+	S-adenosyl-l-methionine hydroxide adenosyltransferase family protein	NA	NA	NA	NA	NA
WP_000403162.1|429247_429796_+	ECF-type riboflavin transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_000693286.1|429802_430060_+	hypothetical protein	NA	NA	NA	NA	NA
WP_115259297.1|430161_431844_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	34.4	7.7e-19
WP_115259299.1|431828_432659_+	energy-coupling factor transporter transmembrane protein EcfT	NA	NA	NA	NA	NA
WP_000181374.1|432851_433355_+|tRNA	tRNA (cytidine(34)-2'-O)-methyltransferase	tRNA	NA	NA	NA	NA
WP_000185827.1|433807_434371_+	ECF transporter S component	NA	NA	NA	NA	NA
WP_000678691.1|434384_435011_+	phosphatase PAP2 family protein	NA	NA	NA	NA	NA
WP_000867289.1|435037_435427_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000418402.1|436007_436595_+	DNA-directed RNA polymerase subunit delta	NA	NA	NA	NA	NA
WP_000105239.1|436984_438592_+	CTP synthase	NA	A0A1J0FA14	Only_Syngen_Nebraska_virus	47.0	2.0e-141
WP_000026638.1|439150_440782_-	Na/Pi cotransporter family protein	NA	NA	NA	NA	NA
WP_115259301.1|441074_446054_+	YSIRK-type signal peptide-containing protein	NA	NA	NA	NA	NA
WP_001096750.1|446143_447340_+	phosphoglycerate kinase	NA	NA	NA	NA	NA
WP_000119900.1|447475_448003_+	aromatic acid exporter family protein	NA	NA	NA	NA	NA
WP_000659547.1|448079_448436_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_001122900.1|448472_449819_+	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
WP_001808898.1|449914_450034_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000410533.1|449998_450148_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000651177.1|452416_453214_-	tyrosine-type DNA invertase PsrA	NA	A0A0H4TI16	Erysipelothrix_phage	28.7	1.3e-21
WP_000029046.1|454836_456300_-	SAM-dependent DNA methyltransferase	NA	J7I0U9	Acinetobacter_phage	24.8	9.0e-24
WP_000229097.1|456312_458646_-	DEAD/DEAH box helicase family protein	NA	Q6NDX2	Leptospira_phage	25.8	1.1e-18
WP_001088694.1|459250_459760_+	DUF2812 domain-containing protein	NA	NA	NA	NA	NA
WP_000255770.1|459923_460958_+	heat-inducible transcriptional repressor HrcA	NA	NA	NA	NA	NA
WP_000046031.1|460984_461509_+	nucleotide exchange factor GrpE	NA	NA	NA	NA	NA
WP_000034662.1|461997_463821_+	molecular chaperone DnaK	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	47.2	1.3e-133
WP_000114433.1|463822_464179_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001810236.1|464580_465717_+	molecular chaperone DnaJ	NA	A0A0P0YNN4	Yellowstone_lake_phycodnavirus	27.4	1.5e-21
WP_001810235.1|466050_466290_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000777760.1|466451_466739_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001278300.1|466748_467159_-	HIT family protein	NA	B5LJ12	Mycobacterium_phage	31.6	3.4e-05
WP_000889925.1|467226_467958_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	29.5	1.4e-22
WP_000653767.1|467954_469004_+	multidrug ABC transporter permease	NA	NA	NA	NA	NA
WP_000132572.1|469171_469501_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000682135.1|469777_470116_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_001017638.1|470870_472211_+	sensor histidine kinase	NA	NA	NA	NA	NA
WP_000358817.1|472252_472408_-	quorum-sensing system pheromone BlpC	NA	NA	NA	NA	NA
WP_001069091.1|472464_473826_-|bacteriocin	bacteriocin secretion accessory protein	bacteriocin	NA	NA	NA	NA
WP_050237984.1|476275_476428_+|bacteriocin	class IIb bacteriocin, lactobin A/cerein 7B family	bacteriocin	NA	NA	NA	NA
WP_001093248.1|476894_477164_+|bacteriocin	bacteriocin-like peptide BlpJ	bacteriocin	NA	NA	NA	NA
WP_000379964.1|477232_477463_+|bacteriocin	bacteriocin-like peptide BlpU	bacteriocin	NA	NA	NA	NA
WP_000346298.1|477465_477585_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000846944.1|478042_478447_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000379879.1|479498_479753_+|bacteriocin	two-peptide bacteriocin subunit BlpM	bacteriocin	NA	NA	NA	NA
WP_001099492.1|479768_479972_+|bacteriocin	two-peptide bacteriocin subunit BlpN	bacteriocin	NA	NA	NA	NA
WP_001809846.1|480215_480365_+|bacteriocin	bacteriocin-like peptide BlpO	bacteriocin	NA	NA	NA	NA
WP_000346296.1|480468_480588_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000877385.1|481373_481793_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000760521.1|481807_482497_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_000276498.1|482538_482772_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001838554.1|483102_484449_+|transposase	IS1380-like element ISSpn5 family transposase	transposase	A0A1X9I6F6	Streptococcus_phage	40.2	2.6e-78
WP_000638370.1|484630_485242_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_000363002.1|485402_486197_+	phosphotransferase family protein	NA	NA	NA	NA	NA
WP_001266083.1|486193_486829_+|tRNA	tRNA (guanosine(46)-N7)-methyltransferase TrmB	tRNA	NA	NA	NA	NA
WP_001808691.1|486954_487434_+	ribosome maturation factor RimP	NA	NA	NA	NA	NA
WP_000032273.1|487477_488614_+	transcription termination/antitermination protein NusA	NA	NA	NA	NA	NA
WP_000857562.1|488635_488929_+	YlxR family protein	NA	NA	NA	NA	NA
WP_001041390.1|488921_489221_+	YlxQ-related RNA-binding protein	NA	NA	NA	NA	NA
WP_000039210.1|489237_492030_+	translation initiation factor IF-2	NA	A0A2H4UTS4	Bodo_saltans_virus	22.9	3.3e-19
WP_001273601.1|492280_492631_+	30S ribosome-binding factor RbfA	NA	NA	NA	NA	NA
WP_000840403.1|492909_493689_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000522937.1|493690_493873_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000368737.1|494287_494521_+	DUF1858 domain-containing protein	NA	NA	NA	NA	NA
WP_000752891.1|494520_495855_+	DUF438 domain-containing protein	NA	NA	NA	NA	NA
WP_000119707.1|495864_496119_+	DUF1912 family protein	NA	NA	NA	NA	NA
WP_000038619.1|496214_496610_+	helicase	NA	NA	NA	NA	NA
WP_000124551.1|497459_498020_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_000550021.1|498019_498598_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_115259303.1|498590_501242_+|tRNA	valine--tRNA ligase	tRNA	A0A1V0S951	Catovirus	40.9	2.3e-150
WP_000033775.1|501311_502067_+	DUF3883 domain-containing protein	NA	NA	NA	NA	NA
WP_001183267.1|502349_503153_+	cell division protein Fic	NA	NA	NA	NA	NA
WP_001814445.1|503268_503487_-|transposase	IS3 family transposase	transposase	A0A1B1P773	Bacillus_phage	60.3	4.4e-12
WP_001808922.1|503450_503756_-|transposase	IS3 family transposase	transposase	A0A2I6AZV9	Macacine_betaherpesvirus	51.1	2.7e-15
WP_001818155.1|503817_504090_-|transposase	transposase	transposase	A0A1B1P773	Bacillus_phage	50.6	5.9e-14
WP_014632402.1|504569_504770_+	helicase	NA	NA	NA	NA	NA
WP_000584535.1|505069_505909_+	PRD domain-containing protein	NA	NA	NA	NA	NA
WP_000120558.1|505926_507765_+	PTS transporter subunit EIIC	NA	NA	NA	NA	NA
WP_000151838.1|507777_509193_+	glycoside hydrolase family 1 protein	NA	NA	NA	NA	NA
WP_001812918.1|509784_510831_+|tRNA	phenylalanine--tRNA ligase subunit alpha	tRNA	A0A2K9L3A8	Tupanvirus	33.3	1.2e-27
WP_000619941.1|510830_511340_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_000961594.1|511416_513822_+|tRNA	phenylalanine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_000597976.1|513889_514891_-	endonuclease/exonuclease/phosphatase family protein	NA	NA	NA	NA	NA
WP_001814186.1|515618_515885_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_000108220.1|516145_518395_+	5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase	NA	NA	NA	NA	NA
WP_000089975.1|518458_519325_+	methylenetetrahydrofolate reductase [NAD(P)H]	NA	NA	NA	NA	NA
WP_001118979.1|520009_522223_+	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA	NA
WP_000539953.1|522238_522856_+	serine O-acetyltransferase	NA	NA	NA	NA	NA
WP_000613675.1|522867_523752_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_000591096.1|523838_525182_+|tRNA	cysteine--tRNA ligase	tRNA	M1PG92	Moumouvirus	35.8	1.2e-46
>prophage 6
NZ_CP025838	Streptococcus pneumoniae strain SPN XDR SMC1710-32 chromosome, complete genome	2057144	789981	851755	2057144	tRNA,protease,transposase,integrase,bacteriocin	Streptococcus_phage(45.83%)	52	793591:793631	846580:846620
WP_001200062.1|789981_791196_+|tRNA	tRNA 4-thiouridine(8) synthase ThiI	tRNA	NA	NA	NA	NA
WP_001076703.1|791330_792155_+	esterase family protein	NA	NA	NA	NA	NA
WP_001108634.1|792167_793334_+	ATP-grasp domain-containing protein	NA	NA	NA	NA	NA
793591:793631	attL	TCAATGAAAATCAAAGAGCAAACTAGGAAGCTAGCCGCAGG	NA	NA	NA	NA
WP_000627748.1|793841_795335_+	SAM-dependent DNA methyltransferase	NA	J7I0U9	Acinetobacter_phage	31.7	4.0e-35
WP_050119496.1|795347_796271_+	restriction endonuclease subunit S	NA	NA	NA	NA	NA
WP_000260605.1|796362_796599_+	AbrB family transcriptional regulator	NA	NA	NA	NA	NA
WP_000158366.1|796595_797009_+	type II toxin-antitoxin system death-on-curing family toxin	NA	A0A0N9SKD8	Staphylococcus_phage	38.5	3.1e-14
WP_000444455.1|797126_798092_+|integrase	tyrosine-type recombinase/integrase	integrase	A0A2H4JAA2	uncultured_Caudovirales_phage	29.6	1.4e-33
WP_000756128.1|798125_799169_+	restriction endonuclease subunit S	NA	NA	NA	NA	NA
WP_000526339.1|799198_802549_+	DEAD/DEAH box helicase family protein	NA	A0A2I7RGD1	Vibrio_phage	25.2	9.6e-13
WP_001042999.1|803054_803525_-	arginine repressor	NA	NA	NA	NA	NA
WP_001212055.1|803541_805815_-	Xaa-Pro dipeptidyl-peptidase	NA	NA	NA	NA	NA
WP_000561506.1|806160_809262_+	DNA polymerase III subunit alpha	NA	A0A291AWR1	Streptomyces_phage	32.8	3.1e-114
WP_000820852.1|809344_810352_+	6-phosphofructokinase	NA	NA	NA	NA	NA
WP_001042809.1|810410_811916_+	pyruvate kinase	NA	NA	NA	NA	NA
WP_001845837.1|812648_812864_-	S24 family peptidase	NA	Q708R9	Streptococcus_phage	86.4	1.1e-15
WP_000536835.1|813021_813276_-	phage repressor protein	NA	B3GVX0	Streptococcus_phage	61.2	3.3e-19
WP_000749599.1|813711_814584_+	DUF4300 family protein	NA	NA	NA	NA	NA
WP_000420565.1|815216_815528_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000759772.1|815531_816248_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_000530081.1|816369_817626_-|transposase	ISL3 family transposase	transposase	A0A1S5SBP9	Streptococcus_phage	97.1	4.5e-234
WP_000617843.1|817798_818614_-	TIGR03943 family protein	NA	NA	NA	NA	NA
WP_000123614.1|818610_819516_-	permease	NA	NA	NA	NA	NA
WP_115259328.1|819972_822102_+	RNA-binding transcriptional accessory protein	NA	NA	NA	NA	NA
WP_000778587.1|822088_822538_+	SprT family protein	NA	NA	NA	NA	NA
WP_001085044.1|822596_822869_+	PspC domain-containing protein	NA	NA	NA	NA	NA
WP_000680767.1|823222_823414_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000173358.1|823841_824600_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	36.3	7.7e-27
WP_000489386.1|824601_826590_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_001153880.1|827300_828296_-|transposase	IS30 family transposase	transposase	H7BUM7	unidentified_phage	33.6	1.4e-33
WP_000661000.1|829002_830478_+	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_000366713.1|831413_832274_+	polyamine aminopropyltransferase	NA	A0A1C9C533	Heterosigma_akashiwo_virus	30.0	1.0e-11
WP_000764369.1|833528_834656_+	carboxynorspermidine decarboxylase	NA	NA	NA	NA	NA
WP_000969445.1|834652_835738_+	agmatine deiminase	NA	M1HES8	Acanthocystis_turfacea_Chlorella_virus	47.5	1.6e-89
WP_001246753.1|835747_836623_+	N-carbamoylputrescine amidase	NA	M1H5W0	Paramecium_bursaria_Chlorella_virus	50.0	1.9e-77
WP_000593568.1|836803_837613_-	Cof-type HAD-IIB family hydrolase	NA	NA	NA	NA	NA
WP_000602449.1|837884_838106_+|bacteriocin	SP_0924 family bacteriocin-like peptide	bacteriocin	NA	NA	NA	NA
WP_000745380.1|838159_838831_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_001025709.1|839072_839981_+	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	27.7	3.1e-06
WP_000745389.1|839977_840439_+	signal peptidase II	NA	NA	NA	NA	NA
WP_000403193.1|840428_841316_+	RluA family pseudouridine synthase	NA	A0A2H4UV25	Bodo_saltans_virus	27.5	3.8e-09
WP_000728291.1|841318_843202_+	MBL fold metallo-hydrolase	NA	I2E8W4	Clostridium_phage	25.2	1.7e-14
WP_075218898.1|843281_844412_+	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	58.4	1.1e-114
WP_000254687.1|844421_845684_+	glutamate-5-semialdehyde dehydrogenase	NA	A0A1X9I5D4	Streptococcus_phage	64.8	5.0e-140
WP_000689700.1|845687_846485_+	pyrroline-5-carboxylate reductase	NA	A0A1X9I6T5	Streptococcus_phage	50.9	1.1e-60
WP_000033389.1|846706_847345_+	dTMP kinase	NA	M1PSC7	Streptococcus_phage	68.1	1.7e-75
846580:846620	attR	CCTGCGGCTAGCTTCCTAGTTTGCTCTTTGATTTTCATTGA	NA	NA	NA	NA
WP_000806716.1|847341_848232_+	DNA polymerase III subunit delta'	NA	M1NSC1	Streptococcus_phage	51.4	1.4e-72
WP_000358228.1|848271_848589_+	DNA replication initiation control protein YabA	NA	M1PFV3	Streptococcus_phage	60.0	2.9e-28
WP_001166872.1|848591_849461_+	16S rRNA (cytidine(1402)-2'-O)-methyltransferase	NA	M1PLC5	Streptococcus_phage	75.7	3.8e-115
WP_115259330.1|849687_850206_+	ClbS/DfsB family four-helix bundle protein	NA	NA	NA	NA	NA
WP_000345254.1|850314_850962_+	replication initiator protein A	NA	A0A2P0VK56	Streptococcus_phage	33.7	7.0e-13
WP_000997256.1|850950_851755_-|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
>prophage 7
NZ_CP025838	Streptococcus pneumoniae strain SPN XDR SMC1710-32 chromosome, complete genome	2057144	1071360	1085668	2057144	transposase	Streptococcus_phage(20.0%)	13	NA	NA
WP_050197910.1|1071360_1073829_-	DNA gyrase subunit A	NA	G3M9Z5	Bacillus_virus	35.5	4.6e-105
WP_000204727.1|1074022_1075009_+	L-lactate dehydrogenase	NA	NA	NA	NA	NA
WP_000731137.1|1075345_1076041_-	potassium channel family protein	NA	A0A1B0Y2S3	Lactobacillus_phage	44.0	5.4e-19
WP_001809704.1|1076087_1076342_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	A0A1S5S8E8	Streptococcus_phage	51.2	5.3e-17
WP_000208080.1|1076343_1076586_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000530078.1|1076779_1078036_+|transposase	ISL3 family transposase	transposase	A0A1S5SBP9	Streptococcus_phage	96.7	6.6e-233
WP_001289493.1|1078099_1078909_-	MBL fold metallo-hydrolase	NA	A0A0C5AFC1	Paenibacillus_phage	39.0	1.8e-34
WP_100910888.1|1078910_1080260_-	cell wall metabolism sensor histidine kinase VicK	NA	W8CYF6	Bacillus_phage	34.0	5.2e-34
WP_000722076.1|1080252_1080957_-	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	39.8	2.8e-39
WP_115259355.1|1081012_1082188_-	A/G-specific adenine glycosylase	NA	G3CB03	Aeropyrum_pernix_spindle-shaped_virus	29.8	8.8e-22
WP_000845285.1|1082515_1084186_-	formate--tetrahydrofolate ligase	NA	NA	NA	NA	NA
WP_000699494.1|1084415_1085105_+	phosphopantothenate--cysteine ligase	NA	Q9HH70	Methanothermobacter_phage	31.6	6.5e-17
WP_001284128.1|1085116_1085668_+	phosphopantothenoylcysteine decarboxylase	NA	A0A1V0S7W6	Shearwaterpox_virus	36.1	3.1e-25
>prophage 8
NZ_CP025838	Streptococcus pneumoniae strain SPN XDR SMC1710-32 chromosome, complete genome	2057144	1125547	1188469	2057144	integrase,holin,protease,transposase	Streptococcus_phage(62.5%)	61	1118394:1118429	1197019:1197054
1118394:1118429	attL	GCTGACGTGGTTTGAAGAGATTTTCGAAGAGTATTA	NA	NA	NA	NA
WP_000811991.1|1125547_1126351_+|holin	phosphorylcholine transferase LicD	holin	A0A1V0SD50	Indivirus	27.1	4.0e-10
WP_001199652.1|1126352_1127162_+|holin	phosphorylcholine transferase LicD	holin	A0A1V0SD50	Indivirus	30.3	9.1e-10
WP_001126409.1|1127436_1130613_-	carbamoyl-phosphate synthase large subunit	NA	NA	NA	NA	NA
WP_000166701.1|1130925_1132005_-	glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit	NA	R4TGJ8	Halovirus	35.9	6.3e-59
WP_001293838.1|1132054_1132978_-	aspartate carbamoyltransferase catalytic subunit	NA	M1HGA5	Paramecium_bursaria_Chlorella_virus	31.7	5.1e-25
WP_000850024.1|1132996_1133518_-	bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR	NA	NA	NA	NA	NA
WP_000244450.1|1133752_1134358_-	endonuclease III	NA	NA	NA	NA	NA
WP_000773231.1|1134357_1134900_-	DUF177 domain-containing protein	NA	NA	NA	NA	NA
WP_001861318.1|1135624_1137184_+	ABC-F family ATP-binding cassette domain-containing protein	NA	A0A2I4R674	Erysipelothrix_phage	24.8	3.5e-26
WP_000895733.1|1137332_1138232_-|protease	zinc metalloprotease HtpX	protease	NA	NA	NA	NA
WP_000219823.1|1138233_1138794_-	LemA family protein	NA	A0A1X9IGG1	Lactococcus_phage	32.5	1.1e-11
WP_000801931.1|1138887_1139601_+	16S rRNA (guanine(527)-N(7))-methyltransferase RsmG	NA	NA	NA	NA	NA
WP_000863623.1|1141331_1142903_-	signal recognition particle protein	NA	NA	NA	NA	NA
WP_000402066.1|1142914_1143247_-	putative DNA-binding protein	NA	NA	NA	NA	NA
WP_001246421.1|1143337_1143703_-	DUF1934 domain-containing protein	NA	NA	NA	NA	NA
WP_001003502.1|1143786_1145091_+	HD domain-containing protein	NA	A0A1B1ISR1	uncultured_Mediterranean_phage	35.1	3.4e-30
WP_000023523.1|1145103_1145910_+	sugar-phosphatase	NA	NA	NA	NA	NA
WP_001009001.1|1145952_1146951_+	SAP domain-containing protein	NA	NA	NA	NA	NA
WP_001068669.1|1147230_1147578_-	50S ribosomal protein L19	NA	NA	NA	NA	NA
WP_000237399.1|1147696_1148026_-	fluoride efflux transporter CrcB	NA	A0A2H4PQR0	Staphylococcus_phage	37.0	1.4e-09
WP_000712093.1|1148019_1148394_-	fluoride efflux transporter CrcB	NA	NA	NA	NA	NA
WP_000362445.1|1148390_1148657_-	chorismate mutase	NA	NA	NA	NA	NA
WP_001162128.1|1148772_1149216_-	flavodoxin	NA	A7KUZ7	Bacillus_phage	37.4	1.6e-08
WP_000401770.1|1149319_1150255_+	bifunctional oligoribonuclease/PAP phosphatase NrnA	NA	NA	NA	NA	NA
WP_001808393.1|1150308_1150593_+	type B 50S ribosomal protein L31	NA	NA	NA	NA	NA
WP_001818242.1|1150649_1150868_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000199553.1|1151976_1153323_+	NADP-specific glutamate dehydrogenase	NA	NA	NA	NA	NA
WP_000941984.1|1156777_1157074_-	hypothetical protein	NA	NA	NA	NA	NA
WP_050273120.1|1157231_1157519_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000492399.1|1157801_1158638_-	nucleotidyl transferase AbiEii/AbiGii toxin family protein	NA	NA	NA	NA	NA
WP_000227919.1|1158637_1159228_-	type IV toxin-antitoxin system AbiEi family antitoxin domain-containing protein	NA	NA	NA	NA	NA
WP_000420682.1|1159658_1159973_+	YdcP family protein	NA	A0A1S5SF38	Streptococcus_phage	100.0	5.2e-54
WP_000985015.1|1159988_1160375_+	YdcP family protein	NA	A0A1S5SF96	Streptococcus_phage	100.0	3.0e-64
WP_000813488.1|1160403_1161789_+	DNA translocase FtsK	NA	A0A1S5SFB5	Streptococcus_phage	100.0	1.1e-265
WP_001815707.1|1161965_1163384_+	helix-turn-helix domain-containing protein	NA	A0A1S5SEX3	Streptococcus_phage	100.0	1.5e-233
WP_001860874.1|1163432_1163516_+	23S rRNA methyltransferase attenuator leader peptide ErmL	NA	NA	NA	NA	NA
WP_001038795.1|1163640_1164378_+	23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(B)	NA	E4ZFQ0	Streptococcus_phage	99.2	3.1e-134
WP_000019067.1|1164634_1165882_-|transposase	ISL3 family transposase	transposase	Q6V7R1	Burkholderia_virus	23.9	3.9e-12
WP_001009056.1|1166061_1166283_+	hypothetical protein	NA	A0A1S5SEY0	Streptococcus_phage	100.0	4.3e-31
WP_000342539.1|1166399_1166897_+	antirestriction protein ArdA	NA	A0A1S5SF25	Streptococcus_phage	100.0	1.7e-91
WP_000506270.1|1166871_1167378_+	conjugal transfer protein	NA	A0A1S5SEX7	Streptococcus_phage	100.0	8.6e-91
WP_000331160.1|1167361_1169809_+	ATP-binding protein	NA	A0A1S5SF64	Streptococcus_phage	100.0	0.0e+00
WP_100910889.1|1169811_1171989_+	hypothetical protein	NA	A0A1S5SF30	Streptococcus_phage	99.9	0.0e+00
WP_000769868.1|1171985_1172987_+	peptidase P60	NA	A0A1S5SEZ8	Streptococcus_phage	100.0	5.0e-191
WP_100910890.1|1172983_1173871_+	conjugal transfer protein	NA	A0A1S5SF22	Streptococcus_phage	93.9	1.4e-157
WP_001814923.1|1174115_1174232_+	tetracycline resistance determinant leader peptide	NA	NA	NA	NA	NA
WP_000691744.1|1174247_1176167_+	tetracycline resistance ribosomal protection protein Tet(M)	NA	A0A1S5SF82	Streptococcus_phage	97.3	0.0e+00
WP_000336323.1|1176285_1176453_+	conjugal transfer protein	NA	D0R0F6	Streptococcus_phage	68.0	1.6e-14
WP_001814874.1|1177065_1177149_+	23S rRNA methyltransferase attenuation leader peptide	NA	NA	NA	NA	NA
WP_001038790.1|1177273_1178011_+	23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(B)	NA	E4ZFQ0	Streptococcus_phage	99.6	1.4e-134
WP_000576156.1|1178365_1178920_+	recombinase family protein	NA	A0A0F7LA37	Escherichia_phage	52.1	2.3e-36
WP_001240982.1|1178923_1181842_+|transposase	Tn3 family transposase	transposase	A0A1B0V7H9	Salmonella_phage	36.1	1.1e-169
WP_000804885.1|1182641_1183064_+	sigma-70 family RNA polymerase sigma factor	NA	A0A1S5SEW0	Streptococcus_phage	100.0	2.5e-72
WP_000857133.1|1183060_1183291_+	helix-turn-helix domain-containing protein	NA	A0A1S5SEX1	Streptococcus_phage	100.0	2.7e-36
WP_000814511.1|1183751_1183955_+	excisionase	NA	A0A1S5SF07	Streptococcus_phage	100.0	4.0e-31
WP_001291561.1|1184036_1185254_+|integrase	tyrosine-type recombinase/integrase	integrase	A0A1S5SEW7	Streptococcus_phage	100.0	3.7e-233
WP_000821309.1|1185468_1186056_-|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_000840776.1|1186058_1186292_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000566524.1|1186304_1186685_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000645887.1|1186677_1187127_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001210966.1|1187110_1188469_-	DNA (cytosine-5-)-methyltransferase	NA	A0A141E1L1	Streptococcus_phage	56.3	3.9e-130
1197019:1197054	attR	TAATACTCTTCGAAAATCTCTTCAAACCACGTCAGC	NA	NA	NA	NA
>prophage 9
NZ_CP025838	Streptococcus pneumoniae strain SPN XDR SMC1710-32 chromosome, complete genome	2057144	1273369	1314519	2057144	tRNA,holin,transposase	Streptococcus_phage(20.0%)	45	NA	NA
WP_115259363.1|1273369_1273495_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_000484478.1|1273789_1274095_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_000691853.1|1274081_1274276_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_001812990.1|1274472_1274796_-	IS66 family insertion sequence element accessory protein TnpB	NA	NA	NA	NA	NA
WP_001136122.1|1274776_1274962_-	hypothetical protein	NA	NA	NA	NA	NA
WP_100910896.1|1275265_1276828_-	glutamine-hydrolyzing GMP synthase	NA	A0A1V0SH76	Hokovirus	32.8	1.9e-19
WP_100910897.1|1276968_1277667_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000071672.1|1277709_1278606_-	EamA family transporter	NA	NA	NA	NA	NA
WP_000872215.1|1278614_1279550_-	serine hydrolase	NA	NA	NA	NA	NA
WP_001102211.1|1279546_1280272_-	proteinase	NA	NA	NA	NA	NA
WP_000290657.1|1280355_1280991_-|holin	1-alkyl-2-acetylglycerophosphocholine esterase	holin	A0A2K9L661	Tupanvirus	28.7	8.7e-08
WP_115259366.1|1280992_1281820_-	HAD family phosphatase	NA	NA	NA	NA	NA
WP_000930004.1|1282783_1282906_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001272961.1|1283418_1284030_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	42.4	4.9e-16
WP_000855753.1|1284074_1284803_+	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	NA	NA	NA	NA	NA
WP_000272294.1|1284841_1285753_-	thioredoxin-disulfide reductase	NA	G3MA85	Bacillus_virus	51.5	5.9e-90
WP_000926599.1|1285818_1286043_-	DUF4059 family protein	NA	NA	NA	NA	NA
WP_000590970.1|1286120_1286864_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	40.5	4.7e-29
WP_001103449.1|1286863_1287664_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_000889093.1|1287821_1288178_-	arsenate reductase family protein	NA	M1PLC0	Streptococcus_phage	57.3	1.2e-33
WP_001170346.1|1288190_1288703_-	methylated-DNA--[protein]-cysteine S-methyltransferase	NA	M1PFU9	Streptococcus_phage	55.6	1.3e-46
WP_000405832.1|1288702_1289197_-	GNAT family N-acetyltransferase	NA	M1PSC3	Streptococcus_phage	52.1	1.9e-42
WP_000858730.1|1289331_1289778_+	DUF1836 domain-containing protein	NA	NA	NA	NA	NA
WP_001097993.1|1289774_1290422_+	hemolysin III family protein	NA	NA	NA	NA	NA
WP_000689945.1|1290442_1291024_-	pyridoxal 5'-phosphate synthase glutaminase subunit PdxT	NA	NA	NA	NA	NA
WP_000138517.1|1291024_1291900_-	pyridoxal 5'-phosphate synthase lyase subunit PdxS	NA	NA	NA	NA	NA
WP_000036789.1|1292051_1293431_-	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_000175407.1|1293724_1294648_+	FAD:protein FMN transferase	NA	NA	NA	NA	NA
WP_000915944.1|1294707_1295313_+	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL77	Lactobacillus_phage	54.2	5.9e-54
WP_000673678.1|1295330_1296575_+	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	52.7	3.8e-55
WP_000371287.1|1296670_1296928_-	DUF896 family protein	NA	NA	NA	NA	NA
WP_000164771.1|1296969_1299006_-|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_000038736.1|1299217_1300135_-|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
WP_000369583.1|1300502_1301264_-	hypothetical protein	NA	NA	NA	NA	NA
WP_115259368.1|1301536_1302379_-	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	40.2	1.7e-51
WP_162797819.1|1302493_1303831_-	polysaccharide deacetylase family protein	NA	NA	NA	NA	NA
WP_000915890.1|1304728_1305706_+	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA	NA
WP_000850564.1|1305702_1306785_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	31.0	4.4e-36
WP_001040724.1|1308267_1309464_-	elongation factor Tu	NA	A0A076FFS6	Aureococcus_anophage	29.6	7.3e-32
WP_000348122.1|1310384_1311254_-	aquaporin family protein	NA	M1H9L8	Acanthocystis_turfacea_Chlorella_virus	29.6	4.2e-21
WP_000248996.1|1311476_1311998_-	LPXTG cell wall anchor domain-containing protein	NA	NA	NA	NA	NA
WP_001810000.1|1311969_1313061_-	MucBP domain-containing protein	NA	NA	NA	NA	NA
WP_000935663.1|1313171_1313426_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000200307.1|1313783_1314317_-|transposase	IS630 family transposase	transposase	S5VXX4	Leptospira_phage	29.5	8.9e-06
WP_001809998.1|1314303_1314519_-|transposase	transposase	transposase	NA	NA	NA	NA
>prophage 10
NZ_CP025838	Streptococcus pneumoniae strain SPN XDR SMC1710-32 chromosome, complete genome	2057144	1371542	1425506	2057144	capsid,tRNA,protease,tail,terminase,integrase,holin	Streptococcus_phage(96.36%)	66	1360173:1360205	1433254:1433286
1360173:1360205	attL	AATACTCTTCGAAAATCTCTTCAAACCACGTCA	NA	NA	NA	NA
WP_001138805.1|1371542_1372727_-|tRNA	CCA tRNA nucleotidyltransferase	tRNA	H7BUW3	unidentified_phage	32.6	6.8e-38
WP_000027897.1|1372738_1373506_-	4-hydroxy-tetrahydrodipicolinate reductase	NA	NA	NA	NA	NA
WP_000762061.1|1373771_1374620_-	DegV family protein	NA	NA	NA	NA	NA
WP_001050086.1|1374621_1374996_-	DUF1149 family protein	NA	NA	NA	NA	NA
WP_000521418.1|1375069_1376422_-	phosphoglucosamine mutase	NA	NA	NA	NA	NA
WP_000742290.1|1376445_1377225_-	YbbR-like domain-containing protein	NA	NA	NA	NA	NA
WP_001011058.1|1377211_1378069_-	TIGR00159 family protein	NA	NA	NA	NA	NA
WP_000081003.1|1378204_1379173_+	NAD(P)/FAD-dependent oxidoreductase	NA	Q9JRK7	Streptococcus_phage	100.0	2.8e-66
WP_000350525.1|1379425_1380382_-	N-acetylmuramoyl-L-alanine amidase family protein	NA	A0A1S5SBM2	Streptococcus_phage	99.4	1.5e-144
WP_001186239.1|1380381_1380717_-|holin	phage holin	holin	A0A126GGL9	Streptococcus_phage	99.1	3.4e-51
WP_001810279.1|1380720_1381020_-	hypothetical protein	NA	A0A1S5SC89	Streptococcus_phage	100.0	1.4e-45
WP_000852249.1|1381029_1381380_-	hypothetical protein	NA	A0A060QMT7	Streptococcus_phage	100.0	4.7e-64
WP_001091119.1|1381382_1381586_-	hypothetical protein	NA	X2KU40	Streptococcus_phage	100.0	1.1e-25
WP_000068023.1|1388127_1388478_-	hypothetical protein	NA	A0A141E0R8	Streptococcus_phage	99.1	9.8e-62
WP_000212166.1|1388486_1392080_-	hypothetical protein	NA	A0A141E0R9	Streptococcus_phage	98.6	0.0e+00
WP_000478007.1|1392066_1392417_-	hypothetical protein	NA	A0A060QN56	Streptococcus_phage	100.0	2.1e-56
WP_001185631.1|1392455_1392836_-	hypothetical protein	NA	A0A1S5SF40	Streptococcus_phage	100.0	9.3e-66
WP_000880665.1|1392840_1393254_-|tail	tail protein	tail	A0A1S5SF61	Streptococcus_phage	99.3	3.3e-72
WP_000608235.1|1393256_1393625_-	hypothetical protein	NA	A0A1S5SFB8	Streptococcus_phage	100.0	1.2e-65
WP_000015940.1|1393621_1394137_-	HK97 gp10 family phage protein	NA	A0A141E0I0	Streptococcus_phage	100.0	9.3e-93
WP_001812940.1|1394111_1394414_-	hypothetical protein	NA	X2KU30	Streptococcus_phage	100.0	2.0e-42
WP_000021218.1|1394430_1394742_-	hypothetical protein	NA	A0A1S5S8S7	Streptococcus_phage	99.0	7.2e-48
WP_000669348.1|1394743_1394932_-	hypothetical protein	NA	A0A141DZN7	Streptococcus_phage	100.0	1.4e-27
WP_000863393.1|1394941_1395967_-	sugar-binding protein	NA	A0A1S5S8Q2	Streptococcus_phage	99.7	7.3e-190
WP_001288018.1|1395989_1396514_-	DUF4355 domain-containing protein	NA	E8ZDV2	Streptococcus_phage	98.9	1.7e-73
WP_000565273.1|1396995_1397409_-	HD domain-containing protein	NA	A0A1S5SBR9	Streptococcus_phage	100.0	5.4e-67
WP_000651746.1|1397405_1397615_-	hypothetical protein	NA	A0A1S5SB88	Streptococcus_phage	100.0	3.3e-33
WP_000356287.1|1397616_1399200_-|capsid	minor capsid protein	capsid	A0A1S5SDJ1	Streptococcus_phage	99.2	5.1e-299
WP_000084412.1|1400642_1401941_-|terminase	PBSX family phage terminase large subunit	terminase	A0A141E1F1	Streptococcus_phage	99.3	7.2e-259
WP_000863690.1|1401918_1402431_-|terminase	terminase small subunit	terminase	A0A060QNR7	Streptococcus_phage	99.4	1.5e-87
WP_001030244.1|1403700_1404123_-	DUF1492 domain-containing protein	NA	A0A141E1Y4	Streptococcus_phage	100.0	6.3e-71
WP_001268499.1|1404240_1404558_-	hypothetical protein	NA	A0A1S5SDY8	Streptococcus_phage	98.1	1.4e-51
WP_001041163.1|1404619_1405147_-	DUF1642 domain-containing protein	NA	A0A1S5SE80	Streptococcus_phage	96.0	2.4e-96
WP_000391853.1|1405148_1405463_-	hypothetical protein	NA	A0A1S5SDB3	Streptococcus_phage	98.1	1.5e-56
WP_000119453.1|1405613_1405952_-	hypothetical protein	NA	A0A1S5SDI1	Streptococcus_phage	100.0	5.6e-62
WP_000580029.1|1406396_1407740_-	hypothetical protein	NA	A0A1S5SAS5	Streptococcus_phage	99.3	7.7e-256
WP_000097191.1|1407742_1408564_-	hypothetical protein	NA	A0A1S5SDK7	Streptococcus_phage	99.3	6.5e-157
WP_000054337.1|1408736_1409240_-	hypothetical protein	NA	A0A126GGP3	Streptococcus_phage	98.8	2.9e-91
WP_000885998.1|1409259_1410036_-	AAA family ATPase	NA	A0A141DZQ7	Streptococcus_phage	100.0	8.7e-143
WP_001044592.1|1410035_1410353_-	hypothetical protein	NA	X2KPG0	Streptococcus_phage	100.0	2.0e-53
WP_100910900.1|1410371_1411565_-	type III restriction endonuclease subunit R	NA	X2KU10	Streptococcus_phage	99.7	5.3e-232
WP_000696057.1|1411527_1412013_-	hypothetical protein	NA	X2KUD4	Streptococcus_phage	98.8	1.4e-87
WP_000422308.1|1412012_1412372_-	hypothetical protein	NA	A0A1S5SB89	Streptococcus_phage	99.2	2.3e-58
WP_000157805.1|1412371_1412854_-	siphovirus Gp157 family protein	NA	A0A1S5S7W2	Streptococcus_phage	100.0	1.4e-79
WP_000544342.1|1412846_1413569_-	HNH endonuclease	NA	A0A141E0V1	Streptococcus_phage	98.8	3.3e-136
WP_000252078.1|1413582_1413813_-	hypothetical protein	NA	X2KU06	Streptococcus_phage	100.0	2.2e-33
WP_000189400.1|1413813_1414155_-	hypothetical protein	NA	A0A1S5S7X8	Streptococcus_phage	100.0	1.4e-57
WP_000970850.1|1414166_1414358_-	hypothetical protein	NA	A0A1S5SDN5	Streptococcus_phage	100.0	2.3e-28
WP_001050924.1|1414354_1414549_-	hypothetical protein	NA	X2KSX0	Streptococcus_phage	100.0	1.8e-09
WP_000454230.1|1414545_1414818_-	hypothetical protein	NA	A0A1S5SDW9	Streptococcus_phage	100.0	8.8e-42
WP_000834564.1|1415158_1415350_+	hypothetical protein	NA	X2KSW6	Streptococcus_phage	98.4	1.5e-27
WP_001826935.1|1415303_1415510_-	hypothetical protein	NA	A0A141E1R6	Streptococcus_phage	100.0	4.0e-31
WP_001112859.1|1415532_1415724_-	DNA-binding protein	NA	A0A141DZR9	Streptococcus_phage	100.0	3.0e-28
WP_000142893.1|1415788_1416028_+	hypothetical protein	NA	A0A141DZS0	Streptococcus_phage	100.0	4.7e-39
WP_001810072.1|1416251_1416341_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000970295.1|1416563_1416656_+	type I toxin-antitoxin system Fst family toxin	NA	NA	NA	NA	NA
WP_000493111.1|1417053_1417407_+	helix-turn-helix transcriptional regulator	NA	A0A1S5SEQ8	Streptococcus_phage	99.1	7.1e-60
WP_000156313.1|1417408_1418503_+	hypothetical protein	NA	A0A1S5SFA1	Streptococcus_phage	100.0	3.5e-206
WP_000151192.1|1418725_1419106_+	ImmA/IrrE family metallo-endopeptidase	NA	A0A1S5SFH2	Streptococcus_phage	99.2	1.1e-66
WP_000266847.1|1419247_1420375_+|integrase	site-specific integrase	integrase	A0A1S5SEM0	Streptococcus_phage	100.0	4.5e-209
WP_000011306.1|1420462_1421374_-	DNA-binding protein WhiA	NA	Q7AWZ3	Streptococcus_phage	99.7	1.5e-154
WP_001231086.1|1421370_1422348_-	YvcK family protein	NA	A1IMD5	Streptococcus_phage	100.0	1.2e-184
WP_000163035.1|1422344_1423235_-	RNase adapter RapZ	NA	NA	NA	NA	NA
WP_001140412.1|1423286_1423667_-	RidA family protein	NA	NA	NA	NA	NA
WP_000422599.1|1423677_1424265_-	YihA family ribosome biogenesis GTP-binding protein	NA	NA	NA	NA	NA
WP_024478652.1|1424273_1425506_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	59.0	1.4e-131
1433254:1433286	attR	TGACGTGGTTTGAAGAGATTTTCGAAGAGTATT	NA	NA	NA	NA
>prophage 11
NZ_CP025838	Streptococcus pneumoniae strain SPN XDR SMC1710-32 chromosome, complete genome	2057144	2034013	2042766	2057144		Streptococcus_phage(33.33%)	9	NA	NA
WP_000510412.1|2034013_2034853_-	energy-coupling factor transporter ATPase	NA	A0A2K9L3Z8	Tupanvirus	29.8	2.3e-16
WP_000835713.1|2034837_2035665_-	energy-coupling factor transporter ATPase	NA	G9BWD6	Planktothrix_phage	32.9	2.1e-22
WP_000712132.1|2035661_2036207_-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_001227958.1|2036217_2037039_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_000170191.1|2037080_2038364_-	insulinase family protein	NA	A0A167R9K4	Powai_lake_megavirus	30.7	5.5e-17
WP_000424269.1|2038360_2039611_-	insulinase family protein	NA	A0A1X9I714	Streptococcus_phage	42.1	8.6e-92
WP_000455898.1|2039769_2040138_+	hypothetical protein	NA	A0A1X9I5V8	Streptococcus_phage	56.0	4.5e-17
WP_100910936.1|2040140_2041238_+	DNA replication/repair protein RecF	NA	NA	NA	NA	NA
WP_100910937.1|2041287_2042766_-	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	40.5	4.9e-94
