assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_003354805.1_ASM335480v1	NZ_CP022892	Staphylococcus aureus strain 54 chromosome, complete genome	1	378327-378427	1	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	TTATGAATTGAGTATTAAATTTG	23	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|70aa|up_9|NZ_CP022892.1_369899_370109_-,NA|128aa|up_7|NZ_CP022892.1_370933_371317_-,NA|98aa|up_5|NZ_CP022892.1_372270_372564_-,NA|34aa|up_0|NZ_CP022892.1_377551_377653_+,NA|221aa|down_1|NZ_CP022892.1_379517_380180_-,NA|179aa|down_7|NZ_CP022892.1_386271_386808_-	NA|70aa|up_9|NZ_CP022892.1_369899_370109_-	NA	NA|194aa|up_8|NZ_CP022892.1_370286_370868_+	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]	NA|128aa|up_7|NZ_CP022892.1_370933_371317_-	NA	NA|209aa|up_6|NZ_CP022892.1_371571_372198_-	NF033193, lipo_NDxxF, NDxxF motif lipoprotein	NA|98aa|up_5|NZ_CP022892.1_372270_372564_-	NA	NA|508aa|up_4|NZ_CP022892.1_372642_374166_-	PRK15317, PRK15317, alkyl hydroperoxide reductase subunit F; Provisional	NA|190aa|up_3|NZ_CP022892.1_374181_374751_-	TIGR03137, AhpC, peroxiredoxin	NA|252aa|up_2|NZ_CP022892.1_375242_375998_+	cd02146, NfsA-like, nitroreductase similar to Escherichia coli NfsA	NA|463aa|up_1|NZ_CP022892.1_376078_377467_-	COG1823, COG1823, Predicted Na+/dicarboxylate symporter [General function prediction only]	NA|34aa|up_0|NZ_CP022892.1_377551_377653_+	NA	NA|319aa|down_0|NZ_CP022892.1_378443_379400_-	PRK05035, PRK05035, electron transport complex protein RnfC; Provisional	NA|221aa|down_1|NZ_CP022892.1_379517_380180_-	NA	NA|136aa|down_2|NZ_CP022892.1_380322_380730_-	pfam11181, YflT, Heat induced stress protein YflT	NA|193aa|down_3|NZ_CP022892.1_381242_381821_+	PRK09219, PRK09219, xanthine phosphoribosyltransferase; Validated	NA|423aa|down_4|NZ_CP022892.1_381820_383089_+	TIGR03173, pbuX, xanthine permease	NA|489aa|down_5|NZ_CP022892.1_383126_384593_+	PRK05567, PRK05567, inosine 5'-monophosphate dehydrogenase; Reviewed	NA|514aa|down_6|NZ_CP022892.1_384617_386159_+	PRK00074, guaA, GMP synthase; Reviewed	NA|179aa|down_7|NZ_CP022892.1_386271_386808_-	NA	NA|235aa|down_8|NZ_CP022892.1_387200_387905_-	pfam02452, PemK_toxin, PemK-like, MazF-like toxin of type II toxin-antitoxin system	NA|91aa|down_9|NZ_CP022892.1_388303_388576_-	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair]
GCF_003354805.1_ASM335480v1	NZ_CP022892	Staphylococcus aureus strain 54 chromosome, complete genome	2	622521-622613	2	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	CTAAAGGTGAAGAGGAACGCAGTTGGATGCTA	32	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|36aa|up_3|NZ_CP022892.1_619003_619111_+,NA|169aa|down_4|NZ_CP022892.1_626360_626867_+,NA|239aa|down_5|NZ_CP022892.1_627028_627745_+	NA|313aa|up_9|NZ_CP022892.1_613217_614156_+	cd19083, AKR_AKR11A1_11D1, AKR11A and  AKR11D families of aldo-keto reductase (AKR)	NA|179aa|up_8|NZ_CP022892.1_614366_614903_+	COG0655, WrbA, Multimeric flavodoxin WrbA [General function prediction only]	NA|159aa|up_7|NZ_CP022892.1_615071_615548_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|432aa|up_6|NZ_CP022892.1_615587_616883_+	COG1078, COG1078, HD superfamily phosphohydrolases [General function prediction only]	NA|174aa|up_5|NZ_CP022892.1_616910_617432_+	pfam08741, YwhD, YwhD family	NA|337aa|up_4|NZ_CP022892.1_617918_618929_+	PRK09422, PRK09422, ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional	NA|36aa|up_3|NZ_CP022892.1_619003_619111_+	NA	NA|128aa|up_2|NZ_CP022892.1_619236_619620_+	COG4506, COG4506, Uncharacterized protein conserved in bacteria [Function unknown]	NA|554aa|up_1|NZ_CP022892.1_619616_621278_+	PRK01611, argS, arginyl-tRNA synthetase; Reviewed	NA|212aa|up_0|NZ_CP022892.1_621666_622302_+	COG2231, COG2231, Uncharacterized protein related to Endonuclease III [DNA replication, recombination, and repair]	NA|276aa|down_0|NZ_CP022892.1_622741_623569_+	cd01143, YvrC, Periplasmic binding protein YvrC	NA|317aa|down_1|NZ_CP022892.1_623716_624667_+	pfam01032, FecCD, FecCD transport family	NA|240aa|down_2|NZ_CP022892.1_624721_625441_+	COG1011, COG1011, Predicted hydrolase (HAD superfamily) [General function prediction only]	NA|267aa|down_3|NZ_CP022892.1_625424_626225_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|169aa|down_4|NZ_CP022892.1_626360_626867_+	NA	NA|239aa|down_5|NZ_CP022892.1_627028_627745_+	NA	NA|263aa|down_6|NZ_CP022892.1_627913_628702_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|125aa|down_7|NZ_CP022892.1_628952_629327_-	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|310aa|down_8|NZ_CP022892.1_630274_631204_-	COG3238, COG3238, Uncharacterized protein conserved in bacteria [Function unknown]	NA|75aa|down_9|NZ_CP022892.1_631398_631623_-	pfam11148, DUF2922, Protein of unknown function (DUF2922)
GCF_003354805.1_ASM335480v1	NZ_CP022892	Staphylococcus aureus strain 54 chromosome, complete genome	3	738803-738885	3	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	CCAATTTCTACAGACAATGCAAGTTGG	27	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|69aa|up_9|NZ_CP022892.1_725402_725609_+,NA|34aa|down_1|NZ_CP022892.1_740341_740443_+,NA|52aa|down_8|NZ_CP022892.1_748611_748767_+	NA|69aa|up_9|NZ_CP022892.1_725402_725609_+	NA	NA|237aa|up_8|NZ_CP022892.1_725696_726407_+	COG2049, DUR1, Allophanate hydrolase subunit 1 [Amino acid transport and metabolism]	NA|335aa|up_7|NZ_CP022892.1_726390_727395_+	COG1984, DUR1, Allophanate hydrolase subunit 2 [Amino acid transport and metabolism]	NA|647aa|up_6|NZ_CP022892.1_727868_729809_+	COG1368, MdoB, Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily [Cell envelope biogenesis, outer membrane]	NA|628aa|up_5|NZ_CP022892.1_730079_731963_+	COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]	NA|594aa|up_4|NZ_CP022892.1_731974_733756_+	TIGR01389, recQ, ATP-dependent DNA helicase RecQ	NA|326aa|up_3|NZ_CP022892.1_733977_734955_+	COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]	NA|505aa|up_2|NZ_CP022892.1_734947_736462_+	cd13610, PBP2_ChoS, Substrate-binding domain ChoS of an osmoregulated ABC-type transporter and related proteins; type 2 periplasmic-binding protein fold	NA|353aa|up_1|NZ_CP022892.1_736702_737761_+	PRK03158, PRK03158, histidinol-phosphate aminotransferase; Provisional	NA|181aa|up_0|NZ_CP022892.1_738111_738654_+	COG4502, COG4502, 5'(3')-deoxyribonucleotidase [Nucleotide transport and metabolism]	NA|306aa|down_0|NZ_CP022892.1_739333_740251_-	COG1597, LCB5, Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]	NA|34aa|down_1|NZ_CP022892.1_740341_740443_+	NA	NA|502aa|down_2|NZ_CP022892.1_740520_742026_-	COG3104, PTR2, Dipeptide/tripeptide permease [Amino acid transport and metabolism]	NA|167aa|down_3|NZ_CP022892.1_742366_742867_-	COG0780, COG0780, Enzyme related to GTP cyclohydrolase I [General function prediction only]	NA|289aa|down_4|NZ_CP022892.1_742886_743753_-	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]	NA|133aa|down_5|NZ_CP022892.1_744542_744941_+	COG1780, NrdI, Protein involved in ribonucleotide reduction [Nucleotide transport and metabolism]	NA|702aa|down_6|NZ_CP022892.1_744903_747009_+	PRK07632, PRK07632, ribonucleotide-diphosphate reductase subunit alpha; Validated	NA|324aa|down_7|NZ_CP022892.1_747126_748098_+	TIGR04171, ribonucleotide-diphosphate_reductase_subunit_beta, ribonucleoside-diphosphate reductase, class 1b, beta subunit	NA|52aa|down_8|NZ_CP022892.1_748611_748767_+	NA	NA|324aa|down_9|NZ_CP022892.1_748805_749777_+	COG4606, CeuB, ABC-type enterochelin transport system, permease component [Inorganic ion transport and metabolism]
GCF_003354805.1_ASM335480v1	NZ_CP022892	Staphylococcus aureus strain 54 chromosome, complete genome	4	785352-785437	4	CRISPRCasFinder	no	cas3	cas3,DEDDh,DinG,csa3,WYL	Unclear	CCAACTTGCACATTATTGTAAGCTGACTTT	30	1	5	785382-785407|785382-785407|785382-785407|785382-785407|785382-785407	NZ_CP022892.1_748289-748264|NZ_CP022892.1_2725200-2725225|NZ_CP022892.1_2725256-2725281|NZ_CP022892.1_748345-748320|NZ_CP022892.1_893471-893446	NA	1	1	Unclear	cas3,DEDDh,DinG,csa3,WYL	NA,NA	NA|280aa|up_9|NZ_CP022892.1_772549_773389_+	COG3942, COG3942, Surface antigen [General function prediction only]	NA|217aa|up_8|NZ_CP022892.1_773562_774213_+	pfam12917, HD_2, HD containing hydrolase-like enzyme	NA|79aa|up_7|NZ_CP022892.1_774209_774446_+	COG4897, CsbA, Uncharacterized protein conserved in bacteria [Function unknown]	NA|662aa|up_6|NZ_CP022892.1_774714_776700_+	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|949aa|up_5|NZ_CP022892.1_776707_779554_+	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|311aa|up_4|NZ_CP022892.1_780270_781203_+	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional	NA|280aa|up_3|NZ_CP022892.1_781208_782048_+	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed	NA|162aa|up_2|NZ_CP022892.1_782055_782541_+	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins	NA|480aa|up_1|NZ_CP022892.1_782548_783988_+	sd00008, TPR_YbbN, C-terminal Tetratricopeptide repeat (TPR) region of YbbN and similar motifs	NA|312aa|up_0|NZ_CP022892.1_784054_784990_+	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase	NA|304aa|down_0|NZ_CP022892.1_785869_786781_+	COG1660, COG1660, Predicted P-loop-containing kinase [General function prediction only]	NA|332aa|down_1|NZ_CP022892.1_786777_787773_+	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|315aa|down_2|NZ_CP022892.1_787882_788827_+	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA	NA|196aa|down_3|NZ_CP022892.1_789400_789988_+	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed	NA|301aa|down_4|NZ_CP022892.1_790230_791133_-	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]	NA|210aa|down_5|NZ_CP022892.1_791835_792465_+	PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed	NA|338aa|down_6|NZ_CP022892.1_793224_794238_+	COG2390, DeoR, Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription]	NA|337aa|down_7|NZ_CP022892.1_794290_795301_+	TIGR01534, Glyceraldehyde-3-phosphate_dehydrogenase, glyceraldehyde-3-phosphate dehydrogenase, type I	NA|397aa|down_8|NZ_CP022892.1_795439_796630_+	PRK00073, pgk, phosphoglycerate kinase; Provisional	NA|254aa|down_9|NZ_CP022892.1_796751_797513_+	PRK00042, tpiA, triosephosphate isomerase; Provisional
GCF_003354805.1_ASM335480v1	NZ_CP022892	Staphylococcus aureus strain 54 chromosome, complete genome	5	828683-828764	5	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	CCCCAACTTGCATTGTCTGTAGAA	24	1	2	828707-828740|828707-828740	NZ_CP022892.1_1317864-1317831|NZ_CP022892.1_1407018-1407051	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|38aa|up_1|NZ_CP022892.1_827585_827699_+,NA|144aa|down_8|NZ_CP022892.1_835798_836230_-	NA|206aa|up_9|NZ_CP022892.1_822440_823058_-	COG1279, COG1279, Lysine efflux permease [General function prediction only]	NA|165aa|up_8|NZ_CP022892.1_823212_823707_-	pfam13420, Acetyltransf_4, Acetyltransferase (GNAT) domain	NA|141aa|up_7|NZ_CP022892.1_824105_824528_-	TIGR03561, organ_hyd_perox, peroxiredoxin, Ohr subfamily	NA|239aa|up_6|NZ_CP022892.1_824675_825392_+	PRK13575, PRK13575, type I 3-dehydroquinate dehydratase	NA|180aa|up_5|NZ_CP022892.1_825474_826014_+	cd02135, YdjA-like, nitroreductase family protein similar to Escherichia coli YdjA	NA|107aa|up_4|NZ_CP022892.1_826163_826484_-	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|119aa|up_3|NZ_CP022892.1_826627_826984_+	cd03036, ArsC_like, Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC	NA|127aa|up_2|NZ_CP022892.1_827141_827522_+	PRK01202, PRK01202, glycine cleavage system protein GcvH	NA|38aa|up_1|NZ_CP022892.1_827585_827699_+	NA	NA|293aa|up_0|NZ_CP022892.1_827700_828579_+	COG3878, COG3878, Uncharacterized protein conserved in bacteria [Function unknown]	NA|129aa|down_0|NZ_CP022892.1_829320_829707_+	COG1658, COG1658, Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair]	NA|99aa|down_1|NZ_CP022892.1_829699_829996_+	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|342aa|down_2|NZ_CP022892.1_830245_831271_+	COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]	NA|232aa|down_3|NZ_CP022892.1_831263_831959_+	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism]	NA|274aa|down_4|NZ_CP022892.1_831976_832798_+	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]	NA|407aa|down_5|NZ_CP022892.1_832939_834160_-	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|243aa|down_6|NZ_CP022892.1_834248_834977_-	pfam02876, Stap_Strp_tox_C, Staphylococcal/Streptococcal toxin, beta-grasp domain	NA|243aa|down_7|NZ_CP022892.1_835000_835729_-	pfam02876, Stap_Strp_tox_C, Staphylococcal/Streptococcal toxin, beta-grasp domain	NA|144aa|down_8|NZ_CP022892.1_835798_836230_-	NA	NA|153aa|down_9|NZ_CP022892.1_836246_836705_-	pfam06114, Peptidase_M78, IrrE N-terminal-like domain
GCF_003354805.1_ASM335480v1	NZ_CP022892	Staphylococcus aureus strain 54 chromosome, complete genome	6	893472-893557	6	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	AAAGTCAGCTTACAATAGTGTGCAAGTTGG	30	1	2	893502-893527|893502-893527	NZ_CP022892.1_785463-785438|NZ_CP022892.1_339716-339741	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA,NA	NA|499aa|up_9|NZ_CP022892.1_882360_883857_-	PRK07691, PRK07691, putative monovalent cation/H+ antiporter subunit D; Reviewed	NA|110aa|up_8|NZ_CP022892.1_883849_884179_-	PRK08600, PRK08600, putative monovalent cation/H+ antiporter subunit C; Reviewed	NA|143aa|up_7|NZ_CP022892.1_884190_884619_-	PRK12573, PRK12573, Na(+)/H(+) antiporter subunit B	NA|802aa|up_6|NZ_CP022892.1_884611_887017_-	PRK12645, PRK12645, monovalent cation/H+ antiporter subunit A; Reviewed	NA|128aa|up_5|NZ_CP022892.1_887147_887531_-	pfam08810, KapB, Kinase associated protein B	NA|198aa|up_4|NZ_CP022892.1_887594_888188_+	cd01927, cyclophilin_WD40, cyclophilin_WD40: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a WD40 domain	NA|126aa|up_3|NZ_CP022892.1_888603_888981_+	COG1098, VacB, Predicted RNA binding protein (contains ribosomal protein S1 domain) [Translation, ribosomal structure and biogenesis]	NA|376aa|up_2|NZ_CP022892.1_889342_890470_+	cd04735, OYE_like_4_FMN, Old yellow enzyme (OYE)-related FMN binding domain, group 4	NA|397aa|up_1|NZ_CP022892.1_890777_891968_+	PRK04073, rocD, ornithine--oxo-acid transaminase; Provisional	NA|415aa|up_0|NZ_CP022892.1_892076_893321_+	COG0334, GdhA, Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]	NA|310aa|down_0|NZ_CP022892.1_893709_894639_-	cd08601, GDPD_SaGlpQ_like, Glycerophosphodiester phosphodiesterase domain of Staphylococcus aureus and similar proteins	NA|460aa|down_1|NZ_CP022892.1_894880_896260_-	PRK00855, PRK00855, argininosuccinate lyase; Provisional	NA|402aa|down_2|NZ_CP022892.1_896249_897455_-	PRK00509, PRK00509, argininosuccinate synthase; Provisional	NA|444aa|down_3|NZ_CP022892.1_897805_899137_+	PRK14097, pgi, glucose-6-phosphate isomerase; Provisional	NA|192aa|down_4|NZ_CP022892.1_899461_900037_+	COG0398, COG0398, Uncharacterized conserved protein [Function unknown]	NA|175aa|down_5|NZ_CP022892.1_900041_900566_+	TIGR02227, Inactive_signal_peptidase_IA	NA|192aa|down_6|NZ_CP022892.1_900581_901157_+	TIGR02227, Inactive_signal_peptidase_IA	NA|1159aa|down_7|NZ_CP022892.1_901316_904793_+	TIGR02773, ATP-dependent_helicase/deoxyribonuclease_subunit_B, helicase-exonuclease AddAB, AddB subunit	NA|1218aa|down_8|NZ_CP022892.1_904793_908447_+	TIGR02785, ATP-dependent_helicase/nuclease_subunit_A, helicase-exonuclease AddAB, AddA subunit, Firmicutes type	NA|301aa|down_9|NZ_CP022892.1_908612_909515_+	COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism]
GCF_003354805.1_ASM335480v1	NZ_CP022892	Staphylococcus aureus strain 54 chromosome, complete genome	7	1027030-1027117	7	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	CCCCTAACAACTAAAAGTTGTAAGG	25	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|40aa|up_0|NZ_CP022892.1_1026906_1027026_+,NA|45aa|down_0|NZ_CP022892.1_1027126_1027261_-,NA|432aa|down_1|NZ_CP022892.1_1027412_1028708_+	NA|730aa|up_9|NZ_CP022892.1_1015484_1017674_+	PRK01213, PRK01213, phosphoribosylformylglycinamidine synthase subunit PurL	NA|495aa|up_8|NZ_CP022892.1_1017652_1019137_+	PRK07272, PRK07272, amidophosphoribosyltransferase; Provisional	NA|343aa|up_7|NZ_CP022892.1_1019129_1020158_+	PRK05385, PRK05385, phosphoribosylaminoimidazole synthetase; Provisional	NA|189aa|up_6|NZ_CP022892.1_1020160_1020727_+	COG0299, PurN, Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]	NA|493aa|up_5|NZ_CP022892.1_1020741_1022220_+	PRK00881, purH, bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional	NA|416aa|up_4|NZ_CP022892.1_1022241_1023489_+	PRK13790, PRK13790, phosphoribosylamine--glycine ligase; Provisional	NA|269aa|up_3|NZ_CP022892.1_1023753_1024560_-	COG0619, CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters [Inorganic ion transport and metabolism]	NA|467aa|up_2|NZ_CP022892.1_1024552_1025953_-	cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system	NA|192aa|up_1|NZ_CP022892.1_1025967_1026543_-	COG4721, COG4721, ABC-type cobalt transport system, predicted permease component [Inorganic ion transport and metabolism]	NA|40aa|up_0|NZ_CP022892.1_1026906_1027026_+	NA	NA|45aa|down_0|NZ_CP022892.1_1027126_1027261_-	NA	NA|432aa|down_1|NZ_CP022892.1_1027412_1028708_+	NA	NA|391aa|down_2|NZ_CP022892.1_1029132_1030305_+	COG1092, COG1092, Predicted SAM-dependent methyltransferases [General function prediction only]	NA|181aa|down_3|NZ_CP022892.1_1030358_1030901_+	pfam05128, DUF697, Domain of unknown function (DUF697)	NA|89aa|down_4|NZ_CP022892.1_1031054_1031321_+	PRK13780, PRK13780, phosphocarrier protein HPr; Provisional	NA|573aa|down_5|NZ_CP022892.1_1031323_1033042_+	COG1080, PtsA, Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) [Carbohydrate transport and metabolism]	NA|78aa|down_6|NZ_CP022892.1_1033278_1033512_-	cd02976, NrdH, NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile	NA|454aa|down_7|NZ_CP022892.1_1033709_1035071_+	pfam01654, Cyt_bd_oxida_I, Cytochrome bd terminal oxidase subunit I	NA|340aa|down_8|NZ_CP022892.1_1035067_1036087_+	COG1294, AppB, Cytochrome bd-type quinol oxidase, subunit 2 [Energy production and conversion]	NA|221aa|down_9|NZ_CP022892.1_1036219_1036882_+	COG0569, TrkA, K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
GCF_003354805.1_ASM335480v1	NZ_CP022892	Staphylococcus aureus strain 54 chromosome, complete genome	8	1810216-1810426	1	CRT	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	CAATAATGTGCAAGTTGGGNTAAGGGCCCCAACACAGANNN	41	3	27	1810254-1810274|1810313-1810332|1810313-1810332|1810313-1810332|1810313-1810332|1810313-1810332|1810313-1810332|1810313-1810332|1810313-1810332|1810313-1810332|1810313-1810332|1810313-1810332|1810313-1810332|1810313-1810332|1810313-1810332|1810313-1810332|1810313-1810332|1810313-1810332|1810313-1810332|1810313-1810332|1810313-1810332|1810313-1810332|1810313-1810332|1810313-1810332|1810313-1810332|1810313-1810332|1810371-1810388	NZ_CP022892.1_1810195-1810215|NZ_CP022892.1_114777-114796|NZ_CP022892.1_257973-257992|NZ_CP022892.1_339847-339866|NZ_CP022892.1_779901-779882|NZ_CP022892.1_779956-779937|NZ_CP022892.1_780011-779992|NZ_CP022892.1_785560-785541|NZ_CP022892.1_785618-785599|NZ_CP022892.1_828780-828761|NZ_CP022892.1_913058-913039|NZ_CP022892.1_1037032-1037013|NZ_CP022892.1_1317732-1317751|NZ_CP022892.1_1407150-1407131|NZ_CP022892.1_1631614-1631595|NZ_CP022892.1_1810140-1810159|NZ_CP022892.1_1968199-1968180|NZ_CP022892.1_2474494-2474513|NZ_CP022892.1_2725319-2725300|NZ_CP022892.1_258028-258047|NZ_CP022892.1_792827-792808|NZ_CP022892.1_1111306-1111325|NZ_CP022892.1_1367078-1367059|NZ_CP022892.1_1665580-1665561|NZ_CP022892.1_1977607-1977588|NZ_CP022892.1_752864-752883|NZ_CP022892.1_1810198-1810215	NA	3	3	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA,NA	NA|199aa|up_9|NZ_CP022892.1_1800735_1801332_-	PRK00629, pheT, phenylalanyl-tRNA synthetase subunit beta; Reviewed	NA|286aa|up_8|NZ_CP022892.1_1801360_1802218_-	PRK13668, PRK13668, hypothetical protein; Provisional	NA|104aa|up_7|NZ_CP022892.1_1802317_1802629_-	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|359aa|up_6|NZ_CP022892.1_1802693_1803770_-	cd05656, M42_Frv, M42 Peptidase, endoglucanases	NA|104aa|up_5|NZ_CP022892.1_1803856_1804168_+	COG5584, COG5584, Predicted small secreted protein [Function unknown]	NA|281aa|up_4|NZ_CP022892.1_1804292_1805135_-	cd07728, YtnP-like_MBL-fold, Bacillus subtilis YtnP and related proteins; MBL-fold metallo hydrolase domain	NA|215aa|up_3|NZ_CP022892.1_1805604_1806249_-	PRK00121, trmB, tRNA (guanine-N(7)-)-methyltransferase; Reviewed	NA|264aa|up_2|NZ_CP022892.1_1806263_1807055_-	COG0510, ycfN, Thiamine kinase and related kinases [Coenzyme transport and metabolism]	NA|283aa|up_1|NZ_CP022892.1_1807604_1808453_-	TIGR01121, D-alanine_aminotransferase, D-amino acid aminotransferase	NA|470aa|up_0|NZ_CP022892.1_1808456_1809866_-	PRK07318, PRK07318, dipeptidase PepV; Reviewed	NA|141aa|down_0|NZ_CP022892.1_1810729_1811152_-	pfam12732, YtxH, YtxH-like protein	NA|232aa|down_1|NZ_CP022892.1_1811168_1811864_-	COG1187, RsuA, 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases [Translation, ribosomal structure and biogenesis]	NA|554aa|down_2|NZ_CP022892.1_1811860_1813522_-	cd13124, MATE_SpoVB_like, Stage V sporulation protein B, also known as Stage III sporulation protein F, and related proteins	NA|423aa|down_3|NZ_CP022892.1_1813928_1815197_+	pfam03486, HI0933_like, HI0933-like protein	NA|2187aa|down_4|NZ_CP022892.1_1815313_1821874_-	TIGR04263, cell_wall_surface_anchor_family_protein, SasC/Mrp/FmtB intercellular aggregation domain	NA|104aa|down_5|NZ_CP022892.1_1822199_1822511_-	cd00158, RHOD, Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein	NA|805aa|down_6|NZ_CP022892.1_1822532_1824947_-	PRK00390, leuS, leucyl-tRNA synthetase; Validated	NA|394aa|down_7|NZ_CP022892.1_1825237_1826419_-	cd17329, MFS_MdtH_MDR_like, Multidrug resistance protein MdtH and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily	NA|318aa|down_8|NZ_CP022892.1_1826528_1827482_+	COG1242, COG1242, Predicted Fe-S oxidoreductase [General function prediction only]	NA|188aa|down_9|NZ_CP022892.1_1827478_1828042_+	pfam06962, rRNA_methylase, Putative rRNA methylase
GCF_003354805.1_ASM335480v1	NZ_CP022892	Staphylococcus aureus strain 54 chromosome, complete genome	9	2158730-2158880	8	CRISPRCasFinder	no	csa3	cas3,DEDDh,DinG,csa3,WYL	Type I-A	AACTTTAGTTGTTAGGGGCTCTTATGCA	28	0	0	NA	NA	NA	2	2	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|77aa|up_5|NZ_CP022892.1_2153601_2153832_-,NA|364aa|up_0|NZ_CP022892.1_2157620_2158712_+,NA|35aa|down_0|NZ_CP022892.1_2159211_2159316_-,NA|31aa|down_2|NZ_CP022892.1_2161427_2161520_+	NA|237aa|up_9|NZ_CP022892.1_2149211_2149922_+	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase	NA|148aa|up_8|NZ_CP022892.1_2150042_2150486_-	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism]	NA|138aa|up_7|NZ_CP022892.1_2150685_2151099_-	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function    prediction only]	NA|458aa|up_6|NZ_CP022892.1_2151556_2152930_-	pfam01878, EVE, EVE domain	NA|77aa|up_5|NZ_CP022892.1_2153601_2153832_-	NA	NA|313aa|up_4|NZ_CP022892.1_2153862_2154801_-	COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism]	NA|222aa|up_3|NZ_CP022892.1_2155235_2155901_-	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5	csa3|107aa|up_2|NZ_CP022892.1_2156052_2156373_+	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|327aa|up_1|NZ_CP022892.1_2156374_2157355_+	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	NA|364aa|up_0|NZ_CP022892.1_2157620_2158712_+	NA	NA|35aa|down_0|NZ_CP022892.1_2159211_2159316_-	NA	NA|379aa|down_1|NZ_CP022892.1_2160002_2161139_-	pfam02037, SAP, SAP domain	NA|31aa|down_2|NZ_CP022892.1_2161427_2161520_+	NA	NA|286aa|down_3|NZ_CP022892.1_2162224_2163082_-	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|261aa|down_4|NZ_CP022892.1_2163149_2163932_-	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|602aa|down_5|NZ_CP022892.1_2164163_2165969_-	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|513aa|down_6|NZ_CP022892.1_2166649_2168188_+	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]	NA|711aa|down_7|NZ_CP022892.1_2168222_2170355_+	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|145aa|down_8|NZ_CP022892.1_2170366_2170801_+	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]	NA|369aa|down_9|NZ_CP022892.1_2170800_2171907_+	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional
GCF_003354805.1_ASM335480v1	NZ_CP022892	Staphylococcus aureus strain 54 chromosome, complete genome	10	2282892-2283085	2	CRT	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	TGTTGGGGCCCCGCCAACTTGCA	23	3	13	2282915-2282947|2282915-2282947|2282915-2282947|2282915-2282947|2282915-2282947|2282971-2283006|2282971-2283006|2282971-2283006|2282971-2283006|2283030-2283062|2283030-2283062|2283030-2283062|2283030-2283062	NZ_CP022892.1_785418-785450|NZ_CP022892.1_1111390-1111358|NZ_CP022892.1_1317818-1317786|NZ_CP022892.1_1407064-1407096|NZ_CP022892.1_2559556-2559588|NZ_CP022892.1_1111337-1111302|NZ_CP022892.1_1810171-1810136|NZ_CP022892.1_1631583-1631618|NZ_CP022892.1_1977576-1977611|NZ_CP022892.1_785418-785450|NZ_CP022892.1_1111390-1111358|NZ_CP022892.1_1317818-1317786|NZ_CP022892.1_2559556-2559588	NA	3	3	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|55aa|up_9|NZ_CP022892.1_2273419_2273584_+,NA|106aa|up_8|NZ_CP022892.1_2273828_2274146_+,NA|84aa|up_5|NZ_CP022892.1_2279270_2279522_+,NA|57aa|up_0|NZ_CP022892.1_2282661_2282832_+,NA	NA|55aa|up_9|NZ_CP022892.1_2273419_2273584_+	NA	NA|106aa|up_8|NZ_CP022892.1_2273828_2274146_+	NA	NA|1056aa|up_7|NZ_CP022892.1_2274332_2277500_-	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms]	NA|422aa|up_6|NZ_CP022892.1_2277616_2278882_-	COG2348, COG2348, Peptidoglycan interpeptide bridge formation enzyme [Cell wall/membrane/envelope biogenesis]	NA|84aa|up_5|NZ_CP022892.1_2279270_2279522_+	NA	NA|255aa|up_4|NZ_CP022892.1_2279513_2280278_-	pfam13468, Glyoxalase_3, Glyoxalase-like domain	NA|147aa|up_3|NZ_CP022892.1_2280439_2280880_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|404aa|up_2|NZ_CP022892.1_2280872_2282084_+	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily	NA|117aa|up_1|NZ_CP022892.1_2282185_2282536_-	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|57aa|up_0|NZ_CP022892.1_2282661_2282832_+	NA	NA|341aa|down_0|NZ_CP022892.1_2283226_2284249_-	TIGR02666, Cyclic_pyranopterin_monophosphate_synthase, molybdenum cofactor biosynthesis protein A, bacterial	NA|200aa|down_1|NZ_CP022892.1_2284268_2284868_-	PRK00317, mobA, molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed	NA|78aa|down_2|NZ_CP022892.1_2284874_2285108_-	cd00754, Ubl_MoaD, ubiquitin-like (Ubl) domain found in molybdenum cofactor biosynthesis protein D (MoaD) and similar proteins	NA|149aa|down_3|NZ_CP022892.1_2285113_2285560_-	COG0314, MoaE, Molybdopterin converting factor, large subunit [Coenzyme metabolism]	NA|162aa|down_4|NZ_CP022892.1_2285573_2286059_-	COG1763, MobB, Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]	NA|420aa|down_5|NZ_CP022892.1_2286055_2287315_-	cd00887, MoeA, MoeA family	NA|165aa|down_6|NZ_CP022892.1_2287377_2287872_+	PRK09364, moaC, cyclic pyranopterin monophosphate synthase MoaC	NA|169aa|down_7|NZ_CP022892.1_2287873_2288380_-	COG0521, MoaB, Molybdopterin biosynthesis enzymes [Coenzyme metabolism]	NA|335aa|down_8|NZ_CP022892.1_2288410_2289415_-	PRK07688, PRK07688, thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated	NA|202aa|down_9|NZ_CP022892.1_2289584_2290190_-	COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
