The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP022892	Staphylococcus aureus strain 54 chromosome, complete genome	2768276	716909	724729	2768276		Hokovirus(16.67%)	10	NA	NA
WP_000244412.1|716909_717965_-	HAMP domain-containing histidine kinase	NA	A0A1V0SGX0	Hokovirus	30.0	2.1e-14
WP_000149344.1|717964_718651_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_001037807.1|718625_719099_-	DoxX family protein	NA	NA	NA	NA	NA
WP_001093553.1|719440_719881_-	DM13 domain-containing protein	NA	NA	NA	NA	NA
WP_000637687.1|720160_720745_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001062972.1|720843_721557_-	7-carboxy-7-deazaguanine synthase QueE	NA	A0A1U9WRB6	Streptococcus_virus	43.5	6.5e-52
WP_000941336.1|721560_721980_-	6-carboxytetrahydropterin synthase QueD	NA	S4U060	uncultured_phage	28.7	6.3e-07
WP_000446724.1|721981_722650_-	7-cyano-7-deazaguanine synthase QueC	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	57.5	9.6e-66
WP_000604514.1|723000_723594_+	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	42.9	4.4e-38
WP_001217785.1|723577_724729_+	anthranilate synthase component I family protein	NA	A0A0B5J984	Pandoravirus	35.7	1.6e-23
>prophage 2
NZ_CP022892	Staphylococcus aureus strain 54 chromosome, complete genome	2768276	736702	751478	2768276		uncultured_Caudovirales_phage(50.0%)	14	NA	NA
WP_000663030.1|736702_737761_+	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	26.7	7.9e-22
WP_000197271.1|738111_738654_+	5'-3'-deoxyribonucleotidase	NA	NA	NA	NA	NA
WP_000429014.1|739333_740251_-	diacylglycerol kinase family lipid kinase	NA	A0A1V0SBJ0	Catovirus	22.0	3.7e-07
WP_001790641.1|740341_740443_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000193751.1|740520_742026_-	peptide MFS transporter	NA	A0A0P0IY73	Acinetobacter_phage	32.2	2.0e-58
WP_000930014.1|742366_742867_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	E7DN65	Pneumococcus_phage	71.5	5.9e-52
WP_001068497.1|742886_743753_-	DMT family transporter	NA	NA	NA	NA	NA
WP_000692521.1|744542_744941_+	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	A0A2H4J545	uncultured_Caudovirales_phage	72.0	1.2e-52
WP_000855505.1|744903_747009_+	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A0A2H4J2N6	uncultured_Caudovirales_phage	91.7	0.0e+00
WP_000562498.1|747126_748098_+	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	A0A2H4J4P3	uncultured_Caudovirales_phage	91.3	4.2e-171
WP_000499195.1|748611_748767_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000876318.1|748805_749777_+	ABC transporter permease	NA	A0A2H4IY97	uncultured_Caudovirales_phage	78.9	4.3e-139
WP_001245577.1|749763_750720_+	iron chelate uptake ABC transporter family permease subunit	NA	A0A2H4J116	uncultured_Caudovirales_phage	57.8	1.2e-05
WP_000616842.1|750716_751478_+	ABC transporter ATP-binding protein	NA	Q9EMR9	Amsacta_moorei_entomopoxvirus	31.6	8.5e-18
>prophage 3
NZ_CP022892	Staphylococcus aureus strain 54 chromosome, complete genome	2768276	830245	851453	2768276	integrase,terminase,coat	Staphylococcus_phage(77.78%)	33	832782:832798	848716:848732
WP_000571218.1|830245_831271_+	methionine ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.3	3.9e-26
WP_000520233.1|831263_831959_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_000732326.1|831976_832798_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
832782:832798	attL	TTATTCCTGCTAAATAA	NA	NA	NA	NA
WP_000266157.1|832939_834160_-|integrase	site-specific integrase	integrase	Q4ZE80	Staphylococcus_phage	47.5	6.4e-100
WP_000733775.1|834248_834977_-	staphylococcal enterotoxin type K	NA	A0EX09	Staphylococcus_phage	32.3	1.9e-22
WP_001033316.1|835000_835729_-	staphylococcal enterotoxin type Q	NA	A0EX09	Staphylococcus_phage	35.4	2.3e-28
WP_001228759.1|835798_836230_-	hypothetical protein	NA	Q4ZCB6	Staphylococcus_virus	56.0	5.1e-36
WP_000281657.1|836246_836705_-	ImmA/IrrE family metallo-endopeptidase	NA	A0A0H4J322	Staphylococcus_phage	83.0	5.1e-66
WP_001260004.1|836716_837049_-	helix-turn-helix transcriptional regulator	NA	A0A1J0MFC1	Staphylococcus_phage	74.5	1.6e-37
WP_000243851.1|837241_837505_+	helix-turn-helix transcriptional regulator	NA	A0A2H4J9X2	uncultured_Caudovirales_phage	94.8	3.1e-36
WP_000091731.1|837497_837770_+	winged helix-turn-helix domain-containing protein	NA	Q4ZE77	Staphylococcus_phage	90.0	9.7e-41
WP_000784875.1|837781_837928_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001058486.1|837920_838130_+	hypothetical protein	NA	Q4ZE76	Staphylococcus_phage	94.2	1.7e-29
WP_001103942.1|838132_838453_+	DUF1474 family protein	NA	Q4ZE75	Staphylococcus_phage	51.9	1.3e-20
WP_001002732.1|838516_839386_+	hypothetical protein	NA	A0A1W6JQL5	Staphylococcus_phage	92.7	3.4e-156
WP_000390455.1|839402_840860_+	hypothetical protein	NA	A0A1W6JQD6	Staphylococcus_phage	96.1	1.0e-277
WP_001039168.1|841160_841523_+	hypothetical protein	NA	A0A1W6JQD5	Staphylococcus_phage	99.2	8.9e-66
WP_000998181.1|841524_841809_+	hypothetical protein	NA	A0A1W6JQE4	Staphylococcus_phage	95.7	1.9e-47
WP_001019764.1|841805_842447_+	hypothetical protein	NA	Q4ZE67	Staphylococcus_phage	91.5	1.5e-108
WP_001190615.1|842963_843305_+	hypothetical protein	NA	Q4ZE66	Staphylococcus_phage	99.1	1.4e-57
WP_000846285.1|843316_843895_+	hypothetical protein	NA	A0A2H4JBG0	uncultured_Caudovirales_phage	38.4	1.4e-28
WP_000448101.1|843912_844131_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000771368.1|844181_844709_+|coat	spore coat protein	coat	A0A1W6JQH7	Staphylococcus_phage	97.1	3.5e-87
WP_000358777.1|844711_845053_+	hypothetical protein	NA	A0A1W6JQM3	Staphylococcus_phage	98.2	1.4e-57
WP_001293067.1|845049_845619_+|terminase	terminase small subunit	terminase	Q4ZE85	Staphylococcus_phage	97.9	1.0e-100
WP_000278085.1|845926_846727_+	staphylococcal enterotoxin type B	NA	A0A097PAT7	Streptococcus_pyogenes_phage	49.4	1.0e-53
WP_001035631.1|846804_847362_-	DUF4888 domain-containing protein	NA	A0A1W6JQE5	Staphylococcus_phage	73.8	1.4e-70
WP_001795626.1|847734_847887_+	hypothetical protein	NA	A0A0F6N3H2	Staphylococcus_phage	98.0	7.6e-19
WP_000139424.1|847957_848068_+	hypothetical protein	NA	W5R8J7	Staphylococcus_phage	94.4	2.4e-11
WP_000382163.1|848054_848255_+	hypothetical protein	NA	W5R9N2	Staphylococcus_phage	100.0	3.7e-29
WP_000752917.1|849085_849280_+	CsbD family protein	NA	NA	NA	NA	NA
848716:848732	attR	TTATTCCTGCTAAATAA	NA	NA	NA	NA
WP_001183858.1|849512_850364_-	DUF368 domain-containing protein	NA	NA	NA	NA	NA
WP_000168845.1|850691_851453_+	Fe-S cluster assembly ATPase SufC	NA	A0A1V0SE00	Indivirus	23.3	4.4e-06
>prophage 4
NZ_CP022892	Staphylococcus aureus strain 54 chromosome, complete genome	2768276	1012254	1020727	2768276		Synechococcus_phage(33.33%)	9	NA	NA
WP_000861572.1|1012254_1012737_+	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	44.7	6.2e-22
WP_001010412.1|1012723_1013848_+	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA	NA
WP_000174053.1|1013851_1014556_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	M4R1E8	Synechococcus_phage	42.1	7.3e-48
WP_000848350.1|1014555_1014819_+	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
WP_000666799.1|1014820_1015492_+	phosphoribosylformylglycinamidine synthase I	NA	NA	NA	NA	NA
WP_000032727.1|1015484_1017674_+	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	39.7	1.0e-140
WP_000483713.1|1017652_1019137_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	31.7	3.2e-45
WP_000030812.1|1019129_1020158_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	41.4	1.3e-61
WP_000238664.1|1020160_1020727_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	40.1	6.1e-29
>prophage 5
NZ_CP022892	Staphylococcus aureus strain 54 chromosome, complete genome	2768276	1277392	1282144	2768276	capsid	Staphylococcus_phage(66.67%)	10	NA	NA
WP_001789891.1|1277392_1277590_+	hypothetical protein	NA	A0A1W6JNK0	Staphylococcus_phage	48.4	1.7e-10
WP_001789892.1|1278278_1278503_+	hypothetical protein	NA	A0A1W6JNK0	Staphylococcus_phage	71.0	4.3e-18
WP_001002340.1|1278796_1279003_+	hypothetical protein	NA	A0A2H4PQT0	Staphylococcus_phage	59.7	1.3e-13
WP_001788716.1|1279703_1279814_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000006110.1|1280241_1280427_+	hypothetical protein	NA	A0A0F6N3H3	Staphylococcus_phage	78.7	2.4e-19
WP_000477492.1|1280938_1281043_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001791646.1|1280997_1281171_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000956747.1|1281171_1281423_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001566030.1|1281468_1281762_+|capsid	minor capsid protein	capsid	Q4ZE35	Staphylococcus_virus	69.4	5.7e-31
WP_000900530.1|1281853_1282144_+	hypothetical protein	NA	S6B1L4	Thermus_phage	35.1	5.4e-05
>prophage 6
NZ_CP022892	Staphylococcus aureus strain 54 chromosome, complete genome	2768276	1461021	1548081	2768276	protease,capsid,holin,plate,portal,head,integrase,tRNA,terminase,tail	Staphylococcus_phage(64.47%)	105	1501101:1501118	1546598:1546615
WP_000858789.1|1461021_1462314_-|tRNA	asparagine--tRNA ligase	tRNA	A0A2P1EMB4	Moumouvirus	30.0	1.9e-54
WP_000525078.1|1462635_1465329_-	ATP-dependent helicase DinG	NA	A0A1X9I5C8	Streptococcus_phage	34.4	8.2e-47
WP_000049919.1|1465352_1466324_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_000361544.1|1466310_1467513_-|tRNA	CCA tRNA nucleotidyltransferase	tRNA	H7BUW3	unidentified_phage	42.5	3.2e-35
WP_000690027.1|1467517_1468660_-	N-acetyl-alpha-D-glucosaminyl L-malate synthase BshA	NA	NA	NA	NA	NA
WP_000839926.1|1468900_1469218_-	nucleotide pyrophosphohydrolase	NA	NA	NA	NA	NA
WP_001827022.1|1469554_1470235_-	zinc metallopeptidase	NA	NA	NA	NA	NA
WP_000152734.1|1470306_1470894_-	DUF1405 domain-containing protein	NA	NA	NA	NA	NA
WP_000004947.1|1470883_1471459_-	IDEAL domain-containing protein	NA	G3MAV7	Bacillus_virus	27.2	2.7e-08
WP_011443634.1|1471472_1472576_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000245895.1|1472723_1474022_-	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
WP_000776323.1|1474031_1475096_-	3-dehydroquinate synthase	NA	NA	NA	NA	NA
WP_001269929.1|1475121_1476288_-	chorismate synthase	NA	A0A291AU41	Pandoravirus	32.1	7.6e-34
WP_000789522.1|1476673_1476874_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000442480.1|1477082_1477532_-	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.8	2.4e-28
WP_001817755.1|1477623_1478568_-	heptaprenyl diphosphate synthase subunit II	NA	A0A1V0SE37	Indivirus	24.4	1.3e-10
WP_000774684.1|1478584_1479310_-	demethylmenaquinone methyltransferase	NA	NA	NA	NA	NA
WP_000450553.1|1479312_1479885_-	heptaprenyl diphosphate synthase component 1	NA	NA	NA	NA	NA
WP_001043863.1|1480315_1480588_-	HU family DNA-binding protein	NA	A7KV42	Bacillus_phage	73.3	4.2e-28
WP_000161738.1|1480758_1481757_-	NAD(P)H-dependent glycerol-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_000165530.1|1481773_1483084_-	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_000133954.1|1483305_1484481_-	30S ribosomal protein S1	NA	NA	NA	NA	NA
WP_001789944.1|1484737_1484929_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001789945.1|1485045_1485162_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000644391.1|1485192_1485852_-	(d)CMP kinase	NA	NA	NA	NA	NA
WP_000681756.1|1485928_1486897_+	asparaginase	NA	NA	NA	NA	NA
WP_001174260.1|1487011_1487998_-	YpdA family putative bacillithiol disulfide reductase	NA	NA	NA	NA	NA
WP_001789943.1|1488158_1488275_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000069282.1|1488399_1489860_-	elastin-binding protein EbpS	NA	NA	NA	NA	NA
WP_000902119.1|1490012_1491392_-	ATP-dependent DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	33.6	2.9e-56
WP_001163801.1|1491381_1492335_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001151997.1|1492442_1492691_+	ferredoxin	NA	A0A127AYY7	Bacillus_phage	48.0	8.3e-15
WP_001186912.1|1492796_1493342_-	ECF transporter S component	NA	NA	NA	NA	NA
WP_001789947.1|1493620_1493740_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000913219.1|1493938_1494853_-	DUF1672 domain-containing protein	NA	NA	NA	NA	NA
WP_001033757.1|1494867_1495074_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000472936.1|1495066_1496005_-	DUF1672 domain-containing protein	NA	NA	NA	NA	NA
WP_000476873.1|1496062_1496980_-	DUF1672 domain-containing protein	NA	NA	NA	NA	NA
WP_000464818.1|1497070_1497418_-	hypothetical protein	NA	Q4ZCJ7	Staphylococcus_virus	100.0	3.0e-26
WP_000675478.1|1497662_1498499_-	hypothetical protein	NA	D2JLG6	Staphylococcus_phage	100.0	8.4e-152
WP_000909210.1|1499114_1500569_-	CHAP domain-containing protein	NA	Q8SDN4	Staphylococcus_virus	99.8	7.5e-289
WP_000339144.1|1500579_1500882_-|holin	phage holin	holin	B7T0L0	Staphylococcus_virus	100.0	4.1e-48
WP_000466784.1|1501017_1501317_-	DUF2951 domain-containing protein	NA	A0A2I6PER2	Staphylococcus_phage	100.0	2.0e-31
1501101:1501118	attL	TGTCTCTAATATTTTTAG	NA	NA	NA	NA
WP_000916020.1|1501362_1501527_-	XkdX family protein	NA	A0A2I6PES4	Staphylococcus_phage	100.0	4.9e-24
WP_001166599.1|1501519_1501909_-	DUF2977 domain-containing protein	NA	A0A2I6PER1	Staphylococcus_phage	100.0	2.2e-62
WP_000067148.1|1501908_1503375_-|plate	BppU family phage baseplate upper protein	plate	Q8SDN8	Staphylococcus_virus	100.0	3.4e-257
WP_000429551.1|1503374_1505285_-	minor structural protein	NA	A0A2I6PF35	Staphylococcus_phage	100.0	0.0e+00
WP_000179862.1|1505300_1505591_-	hypothetical protein	NA	Q8SDP0	Staphylococcus_virus	100.0	2.1e-49
WP_000384461.1|1505590_1507174_-	peptidase	NA	Q8SDP1	Staphylococcus_virus	99.8	1.2e-308
WP_001190533.1|1507182_1508007_-|tail	phage tail family protein	tail	A0A2I6PER3	Staphylococcus_phage	100.0	4.1e-159
WP_001003443.1|1508006_1514207_-|tail	phage tail tape measure protein	tail	Q8SDP3	Staphylococcus_virus	100.0	0.0e+00
WP_000438833.1|1514220_1514379_-	hypothetical protein	NA	A0A2I6PES8	Staphylococcus_phage	100.0	1.2e-19
WP_000589167.1|1514420_1514771_-	hypothetical protein	NA	A0A2I6PEQ2	Staphylococcus_phage	100.0	1.1e-55
WP_000169128.1|1514828_1515284_-	Ig domain-containing protein	NA	A0A2I6PF45	Staphylococcus_phage	100.0	1.3e-77
WP_000807536.1|1515375_1516017_-|tail	tail protein	tail	A0A2I6PEP6	Staphylococcus_phage	100.0	5.9e-121
WP_001023806.1|1516051_1516447_-	DUF3168 domain-containing protein	NA	A0A2I6PEQ4	Staphylococcus_phage	100.0	8.8e-67
WP_000110023.1|1516447_1516849_-	hypothetical protein	NA	A0A2I6PF54	Staphylococcus_phage	100.0	8.1e-68
WP_000395498.1|1516845_1517178_-	hypothetical protein	NA	A0A2I6PES3	Staphylococcus_phage	100.0	4.1e-57
WP_000050973.1|1517189_1517468_-|head,tail	phage gp6-like head-tail connector protein	head,tail	A0A2I6PEQ1	Staphylococcus_phage	100.0	2.1e-46
WP_001142734.1|1517536_1518700_-|capsid	phage major capsid protein	capsid	A0A2I6PEQ3	Staphylococcus_phage	100.0	1.2e-217
WP_000061866.1|1518711_1519485_-|protease	Clp protease ClpP	protease	A0A2I6PEQ7	Staphylococcus_phage	100.0	2.4e-137
WP_001100665.1|1519468_1520707_-|portal	phage portal protein	portal	A0A2I6PF26	Staphylococcus_phage	100.0	1.2e-234
WP_115312388.1|1520711_1522403_-|terminase	terminase large subunit	terminase	Q4ZD20	Staphylococcus_virus	99.8	0.0e+00
WP_000778933.1|1522392_1522698_-|terminase	terminase	terminase	A0A2I6PEQ6	Staphylococcus_phage	100.0	2.9e-49
WP_000160683.1|1522819_1523134_-	HNH endonuclease	NA	Q8SDQ2	Staphylococcus_virus	100.0	1.9e-56
WP_000513703.1|1523290_1523728_-	transcriptional regulator	NA	A0A2K9VBV2	Staphylococcus_phage	99.3	7.9e-77
WP_001795330.1|1523740_1525108_-	DEAD/DEAH box helicase	NA	Q4ZCF6	Staphylococcus_virus	100.0	4.6e-264
WP_000665203.1|1525088_1525379_-	VRR-NUC domain-containing protein	NA	A0A2I6PEN7	Staphylococcus_phage	100.0	6.5e-51
WP_011447017.1|1525512_1525617_+	hypothetical protein	NA	Q4ZCF8	Staphylococcus_virus	100.0	9.4e-13
WP_000884857.1|1525719_1528167_-	hypothetical protein	NA	Q4ZCG0	Staphylococcus_virus	99.9	0.0e+00
WP_000265258.1|1528218_1528419_-	DUF1514 family protein	NA	A0A2I6PF41	Staphylococcus_phage	100.0	2.9e-26
WP_001825321.1|1528486_1528654_-	transcriptional activator RinB	NA	A0A2I6PF16	Staphylococcus_phage	100.0	2.1e-22
WP_001125015.1|1528641_1528842_-	hypothetical protein	NA	A0A2I6PF22	Staphylococcus_phage	100.0	1.8e-28
WP_000195837.1|1528816_1529005_-	DUF1381 domain-containing protein	NA	Q4ZCG4	Staphylococcus_virus	100.0	1.6e-26
WP_115312389.1|1529041_1529584_-	dUTP pyrophosphatase	NA	Q4ZD81	Staphylococcus_virus	99.4	2.1e-95
WP_001065023.1|1529588_1529825_-	DUF1024 family protein	NA	C8CH04	Staphylococcus_phage	100.0	1.1e-35
WP_000144708.1|1529817_1530126_-	hypothetical protein	NA	Q4ZBK6	Staphylococcus_phage	100.0	8.1e-52
WP_000979209.1|1530122_1530470_-	hypothetical protein	NA	D2JGL4	Staphylococcus_phage	100.0	5.9e-59
WP_000695759.1|1530466_1530868_-	hypothetical protein	NA	A0A0N7E0T5	Staphylococcus_phage	100.0	7.0e-72
WP_000693987.1|1530870_1531077_-	hypothetical protein	NA	A0A0N9BAW9	Staphylococcus_phage	100.0	3.0e-34
WP_015968801.1|1531090_1531339_-	PVL orf 51-like protein	NA	Q8SDR2	Staphylococcus_virus	100.0	1.8e-41
WP_000235381.1|1531347_1531548_-	hypothetical protein	NA	A0A2I6PF32	Staphylococcus_phage	100.0	1.3e-29
WP_000111488.1|1531550_1531808_-	DUF3310 domain-containing protein	NA	A0A2I6PF10	Staphylococcus_phage	100.0	5.7e-43
WP_000113981.1|1531807_1532209_-	PVL family protein	NA	A0A2I6PF14	Staphylococcus_phage	100.0	1.2e-68
WP_001164629.1|1532208_1532394_-	DUF3113 family protein	NA	A0A2I6PEM8	Staphylococcus_phage	100.0	7.0e-27
WP_001796208.1|1532406_1534359_-	DNA polymerase	NA	A0A2I6PF18	Staphylococcus_phage	100.0	0.0e+00
WP_000645042.1|1534427_1534985_-	DUF2815 family protein	NA	A0A2I6PF05	Staphylococcus_phage	100.0	1.8e-97
WP_000762532.1|1535010_1536177_-	DUF2800 domain-containing protein	NA	A0A2I6PDL4	Staphylococcus_phage	100.0	8.3e-222
WP_000279445.1|1536173_1536536_-	hypothetical protein	NA	A0A2K9VBV1	Staphylococcus_phage	100.0	6.4e-56
WP_000066008.1|1536953_1537115_-	DUF1270 family protein	NA	A0A2I6PDF7	Staphylococcus_phage	96.2	1.2e-19
WP_001124198.1|1537126_1537390_-	helix-turn-helix domain-containing protein	NA	A0A2I6PEL8	Staphylococcus_phage	100.0	2.5e-46
WP_001036303.1|1537414_1537630_-	hypothetical protein	NA	A0A2I6PDN5	Staphylococcus_phage	95.8	5.5e-31
WP_000549549.1|1537685_1537916_+	hypothetical protein	NA	A0A2I6PE22	Staphylococcus_phage	97.4	1.8e-35
WP_001115060.1|1538177_1538369_-	helix-turn-helix transcriptional regulator	NA	A0A2I6PEL6	Staphylococcus_phage	100.0	2.3e-28
WP_000429766.1|1538529_1538859_+	helix-turn-helix transcriptional regulator	NA	A0A2I6PEN2	Staphylococcus_phage	100.0	3.2e-54
WP_115312390.1|1538871_1539333_+	toxin	NA	A0A2I6PEK4	Staphylococcus_phage	98.0	7.1e-84
WP_000755721.1|1539350_1539785_+	hypothetical protein	NA	A0A2I6PEM0	Staphylococcus_phage	100.0	1.2e-24
WP_000449657.1|1539813_1540209_+	hypothetical protein	NA	A0A2I6PEJ7	Staphylococcus_phage	99.2	1.1e-69
WP_001013104.1|1540298_1540445_+	hypothetical protein	NA	A0A2I6PEK8	Staphylococcus_phage	89.6	1.1e-14
WP_000191458.1|1540441_1541056_-	hypothetical protein	NA	A7TW88	Staphylococcus_phage	99.5	8.8e-106
WP_000264751.1|1541181_1542387_+|integrase	site-specific integrase	integrase	A0A2I6PEN0	Staphylococcus_phage	100.0	7.7e-223
WP_001804554.1|1542429_1544457_-	hypothetical protein	NA	B5WZK7	Staphylococcus_phage	97.2	3.4e-114
WP_001548912.1|1544449_1545379_-	DUF1672 domain-containing protein	NA	NA	NA	NA	NA
WP_000987769.1|1545623_1547375_-	HAMP domain-containing protein	NA	A0A1V0SGX0	Hokovirus	33.6	1.7e-21
1546598:1546615	attR	TGTCTCTAATATTTTTAG	NA	NA	NA	NA
WP_000064078.1|1547355_1548081_-	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	43.0	3.5e-45
>prophage 7
NZ_CP022892	Staphylococcus aureus strain 54 chromosome, complete genome	2768276	1603205	1611517	2768276	tRNA	Staphylococcus_phage(16.67%)	7	NA	NA
WP_001213908.1|1603205_1603991_-	metal ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.3	8.0e-19
WP_000924214.1|1604116_1605007_-	deoxyribonuclease IV	NA	A0A2H4UU70	Bodo_saltans_virus	33.1	2.0e-26
WP_001062180.1|1605016_1606363_-	DEAD/DEAH box helicase	NA	A0A1V0SIR5	Klosneuvirus	33.7	5.3e-55
WP_000683931.1|1606476_1607577_-	Nif3-like dinuclear metal center hexameric protein	NA	A0A1S5V250	Saudi_moumouvirus	29.6	5.2e-08
WP_000624584.1|1607579_1608257_-|tRNA	tRNA (adenine-N(1))-methyltransferase	tRNA	NA	NA	NA	NA
WP_001283055.1|1608387_1609494_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	38.1	1.1e-37
WP_001217261.1|1609717_1611517_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	36.0	4.6e-54
>prophage 8
NZ_CP022892	Staphylococcus aureus strain 54 chromosome, complete genome	2768276	1680655	1689698	2768276	tRNA	uncultured_Mediterranean_phage(50.0%)	7	NA	NA
WP_000364542.1|1680655_1681174_-	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	46.5	5.6e-29
WP_000594993.1|1681195_1683469_-	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	28.8	1.2e-62
WP_000749795.1|1683671_1685951_-	protein translocase subunit SecDF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.8	1.8e-31
WP_001160682.1|1686225_1686486_-	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	35.3	8.2e-05
WP_001112045.1|1686504_1687644_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.7	5.4e-85
WP_001019172.1|1687666_1688692_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_001005767.1|1688693_1689698_-	Holliday junction branch migration DNA helicase RuvB	NA	B3GAM6	uncultured_virus	29.1	1.7e-05
>prophage 9
NZ_CP022892	Staphylococcus aureus strain 54 chromosome, complete genome	2768276	1815313	1896785	2768276	protease,transposase,tRNA	Staphylococcus_phage(93.44%)	77	NA	NA
WP_115285401.1|1815313_1821874_-	LPXTG-anchored repetitive surface protein SasC	NA	A0A2H4PQU6	Staphylococcus_phage	98.1	2.0e-304
WP_000836465.1|1822199_1822511_-	rhodanese-like domain-containing protein	NA	A0A2H4PQR9	Staphylococcus_phage	100.0	1.6e-52
WP_001108732.1|1822532_1824947_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	99.2	0.0e+00
WP_001025061.1|1825237_1826419_-	MFS transporter	NA	A0A2H4PQR6	Staphylococcus_phage	100.0	5.6e-218
WP_000526539.1|1826528_1827482_+	TIGR01212 family radical SAM protein	NA	A0A2H4PQV5	Staphylococcus_phage	100.0	2.2e-79
WP_000764419.1|1827478_1828042_+	methyltransferase domain-containing protein	NA	A0A2H4PQV0	Staphylococcus_phage	99.5	8.3e-103
WP_000757543.1|1828161_1828563_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000266096.1|1830141_1830969_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_001790712.1|1830971_1831091_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001196354.1|1831202_1832204_+	proline dehydrogenase	NA	A0A2H4PQT6	Staphylococcus_phage	99.7	9.0e-185
WP_001008551.1|1832325_1832790_-	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	99.4	5.8e-70
WP_001159022.1|1832802_1833984_-	3,4-dihydroxy-2-butanone-4-phosphate synthase	NA	A0A2H4PQS2	Staphylococcus_phage	99.7	6.6e-227
WP_000493892.1|1833994_1834627_-	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	99.5	1.7e-112
WP_000384181.1|1834633_1835665_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	99.4	4.8e-197
WP_001261677.1|1836157_1837660_-	FAD-dependent oxidoreductase	NA	A0A2H4PQX2	Staphylococcus_phage	100.0	2.3e-30
WP_000221179.1|1838182_1838497_+	winged helix-turn-helix transcriptional regulator	NA	A0A2H4PQT4	Staphylococcus_phage	100.0	2.0e-53
WP_000989121.1|1838496_1839789_+	arsenite efflux transporter membrane subunit ArsB	NA	A0A2H4PQU3	Staphylococcus_phage	99.5	5.0e-228
WP_000163235.1|1839806_1840202_+	arsenate reductase (thioredoxin)	NA	A0A2H4PQT9	Staphylococcus_phage	100.0	6.3e-73
WP_115312397.1|1840496_1841351_-	autolysin	NA	Q4ZCC7	Staphylococcus_virus	38.6	4.4e-39
WP_000384171.1|1841626_1841851_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000671052.1|1842049_1842520_+	RNA polymerase sigma factor	NA	A0A2H4PQT5	Staphylococcus_phage	99.4	1.0e-82
WP_001153742.1|1842632_1843076_+	competence protein ComK	NA	NA	NA	NA	NA
WP_001030465.1|1843062_1843506_-	hypothetical protein	NA	A0A2H4PQT8	Staphylococcus_phage	85.0	3.0e-55
WP_001168904.1|1843801_1844437_+|protease	CPBP family intramembrane metalloprotease SdpA	protease	NA	NA	NA	NA
WP_001096494.1|1844876_1845590_-	transaldolase	NA	M1PR54	Cyanophage	35.3	5.5e-19
WP_000091445.1|1845849_1846152_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001200542.1|1846407_1846773_+	fluoride efflux transporter CrcB	NA	A0A2H4PQR0	Staphylococcus_phage	100.0	3.6e-59
WP_000623471.1|1846769_1847123_+	CrcB family protein	NA	A0A2H4PQQ7	Staphylococcus_phage	99.1	1.0e-21
WP_000453320.1|1849205_1850039_-	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	98.6	9.6e-156
WP_000366154.1|1850250_1851159_-	NERD domain-containing protein	NA	A0A2H4PQQ8	Staphylococcus_phage	98.7	3.2e-136
WP_000933822.1|1851283_1852477_-	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	99.7	1.9e-218
WP_000109906.1|1852847_1854440_+	phosphoenolpyruvate carboxykinase (ATP)	NA	A0A2H4PQN1	Staphylococcus_phage	100.0	0.0e+00
WP_000093392.1|1854575_1855061_-|transposase	IS200/IS605 family transposase	transposase	A0A1P8BMC0	Lactococcus_phage	35.4	4.9e-19
WP_002868962.1|1855435_1856182_-	S9 family peptidase	NA	A0A2H4PQM6	Staphylococcus_phage	98.4	7.1e-142
WP_000672014.1|1856186_1856660_-	nucleoside triphosphatase YtkD	NA	A0A2H4PQM4	Staphylococcus_phage	98.1	4.7e-83
WP_000718107.1|1856725_1856983_+	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	100.0	7.2e-46
WP_000778523.1|1856979_1857981_-	o-succinylbenzoate synthase	NA	A0A2H4PQM0	Staphylococcus_phage	97.6	4.8e-186
WP_000348360.1|1857985_1859464_-	o-succinylbenzoate--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	97.0	2.0e-281
WP_011443643.1|1859622_1860078_-	DUF4909 domain-containing protein	NA	A0A2H4PQN7	Staphylococcus_phage	98.6	3.0e-79
WP_001795535.1|1860380_1861031_+	calcium-binding protein	NA	A0A2H4PQM8	Staphylococcus_phage	88.4	2.7e-44
WP_000070653.1|1861111_1862107_+	DUF4352 domain-containing protein	NA	A0A2H4PQN2	Staphylococcus_phage	96.4	7.1e-73
WP_000669046.1|1862182_1862809_+	hypothetical protein	NA	A0A2H4PQM7	Staphylococcus_phage	82.7	7.1e-79
WP_000627551.1|1862849_1863194_+	DUF3969 family protein	NA	A0A2H4PQN6	Staphylococcus_phage	92.0	6.3e-53
WP_000414205.1|1863291_1863843_+	hypothetical protein	NA	A0A2H4PQN4	Staphylococcus_phage	94.1	1.0e-20
WP_000494956.1|1864060_1864702_-	ImmA/IrrE family metallo-endopeptidase	NA	A0A2H4PQN8	Staphylococcus_phage	93.2	2.6e-76
WP_000809857.1|1864815_1865001_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000375476.1|1865002_1865179_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000070811.1|1865189_1865573_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001549059.1|1866176_1866320_-|transposase	transposase	transposase	A0A2H4PQU1	Staphylococcus_phage	100.0	6.4e-20
WP_001801861.1|1866522_1866618_+	type I toxin-antitoxin system Fst family toxin PepA1	NA	NA	NA	NA	NA
WP_001791893.1|1866740_1866842_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002868972.1|1867189_1867549_-	DUF1433 domain-containing protein	NA	NA	NA	NA	NA
WP_000831218.1|1868087_1872200_-	SMEK domain-containing protein	NA	A0A2H4PQT3	Staphylococcus_phage	100.0	0.0e+00
WP_000072576.1|1873049_1874249_-	restriction endonuclease subunit S	NA	A0A2H4PQP5	Staphylococcus_phage	99.7	5.5e-229
WP_011443644.1|1874241_1875981_-	type I restriction-modification system subunit M	NA	A0A2H4PQP4	Staphylococcus_phage	99.4	4.4e-288
WP_001791797.1|1875961_1876096_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001038688.1|1876160_1876880_-|protease	serine protease SplF	protease	A0A2H4PQP1	Staphylococcus_phage	100.0	1.1e-131
WP_001038759.1|1877030_1877747_-|protease	serine protease SplE	protease	A0A2H4PQN5	Staphylococcus_phage	100.0	1.1e-131
WP_011447030.1|1877848_1877956_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001038704.1|1877904_1878624_-|protease	serine protease SplD	protease	A0A2H4PQP9	Staphylococcus_phage	99.6	4.6e-130
WP_001038867.1|1878744_1879464_-|protease	serine protease SplC	protease	A0A2H4PQP7	Staphylococcus_phage	99.2	1.2e-130
WP_001039447.1|1879521_1880244_-|protease	serine protease SplB	protease	A0A2H4PQN0	Staphylococcus_phage	99.6	2.4e-131
WP_001039435.1|1880368_1881076_-|protease	serine protease SplA	protease	A0A2H4PQN3	Staphylococcus_phage	100.0	2.6e-130
WP_001092763.1|1882039_1882606_+	DUF4888 domain-containing protein	NA	A0A2H4PQH6	Staphylococcus_phage	100.0	3.3e-99
WP_000586140.1|1883079_1883778_-	hypothetical protein	NA	A0A2H4PQH0	Staphylococcus_phage	94.4	3.8e-113
WP_000581552.1|1883774_1884536_-	lantibiotic immunity ABC transporter MutE/EpiE family permease subunit	NA	A0A2H4PQH2	Staphylococcus_phage	100.0	4.4e-131
WP_001096791.1|1884532_1885225_-	lantibiotic protection ABC transporter ATP-binding subunit	NA	A0A2H4PQG7	Staphylococcus_phage	100.0	6.2e-124
WP_000691541.1|1885247_1886621_-	S8 family serine peptidase	NA	A0A2H4PQH1	Staphylococcus_phage	100.0	2.9e-258
WP_000504439.1|1886630_1887149_-	enterotoxin	NA	A0A2H4PQG9	Staphylococcus_phage	100.0	2.0e-95
WP_000566596.1|1887164_1888409_-	lanthionine synthetase C family protein	NA	A0A2H4PQH9	Staphylococcus_phage	100.0	5.1e-238
WP_001092605.1|1888401_1891395_-	lantibiotic dehydratase	NA	A0A2H4PQG8	Staphylococcus_phage	97.3	0.0e+00
WP_000416756.1|1891459_1891603_-	gallidermin/nisin family lantibiotic	NA	A0A2H4PQH4	Staphylococcus_phage	80.9	5.3e-14
WP_000416759.1|1892339_1892483_-	gallidermin/nisin family lantibiotic	NA	NA	NA	NA	NA
WP_000782464.1|1892724_1893708_-	bi-component leukocidin LukED subunit D	NA	A0A2H4PQH7	Staphylococcus_phage	99.1	2.3e-185
WP_000473596.1|1893709_1894645_-	beta-channel forming cytolysin	NA	A0A2H4PQI5	Staphylococcus_phage	100.0	1.4e-174
WP_001790220.1|1895444_1895984_+	hypothetical protein	NA	Q4ZCB9	Staphylococcus_virus	76.8	2.0e-61
WP_000206350.1|1895996_1896785_+	DUF1828 domain-containing protein	NA	A0A2H4PQI0	Staphylococcus_phage	95.8	5.3e-140
