assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_003354725.1_ASM335472v1	NZ_CP022899	Staphylococcus aureus strain 143 chromosome, complete genome	1	806581-806665	1	CRISPRCasFinder	no	cas3	cas3,csa3,DEDDh,DinG,WYL	Unclear	CACCCCAACTTGCATTGTCTGTAGAA	26	1	2	806607-806639|806607-806639	NZ_CP022899.1_1039942-1039974|NZ_CP022899.1_2371980-2371948	NA	1	1	Unclear	cas3,csa3,DEDDh,DinG,WYL	NA|33aa|up_1|NZ_CP022899.1_805021_805120_+,NA	NA|357aa|up_9|NZ_CP022899.1_795030_796101_-	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain	NA|352aa|up_8|NZ_CP022899.1_796418_797474_+	cd06853, GT_WecA_like, This subfamily contains Escherichia coli WecA, Bacillus subtilis TagO and related proteins	NA|214aa|up_7|NZ_CP022899.1_797637_798279_-	COG1739, COG1739, Uncharacterized conserved protein [Function unknown]	NA|289aa|up_6|NZ_CP022899.1_798422_799289_+	TIGR00762, DegV, EDD domain protein, DegV family	cas3|361aa|up_5|NZ_CP022899.1_799652_800735_+	COG4098, comFA, Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]	NA|225aa|up_4|NZ_CP022899.1_800727_801402_+	COG1040, ComFC, Predicted amidophosphoribosyltransferases [General function prediction only]	NA|191aa|up_3|NZ_CP022899.1_801462_802035_+	COG1544, COG1544, Ribosome-associated protein Y (PSrp-1) [Translation, ribosomal structure and biogenesis]	NA|844aa|up_2|NZ_CP022899.1_802448_804980_+	PRK12904, PRK12904, preprotein translocase subunit SecA; Reviewed	NA|33aa|up_1|NZ_CP022899.1_805021_805120_+	NA	NA|370aa|up_0|NZ_CP022899.1_805294_806405_+	PRK00578, prfB, peptide chain release factor 2; Validated	NA|280aa|down_0|NZ_CP022899.1_807173_808013_+	COG3942, COG3942, Surface antigen [General function prediction only]	NA|217aa|down_1|NZ_CP022899.1_808186_808837_+	pfam12917, HD_2, HD containing hydrolase-like enzyme	NA|79aa|down_2|NZ_CP022899.1_808833_809070_+	COG4897, CsbA, Uncharacterized protein conserved in bacteria [Function unknown]	NA|662aa|down_3|NZ_CP022899.1_809338_811324_+	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|949aa|down_4|NZ_CP022899.1_811331_814178_+	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|311aa|down_5|NZ_CP022899.1_814788_815721_+	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional	NA|281aa|down_6|NZ_CP022899.1_815726_816569_+	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed	NA|162aa|down_7|NZ_CP022899.1_816576_817062_+	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins	NA|480aa|down_8|NZ_CP022899.1_817069_818509_+	sd00008, TPR_YbbN, C-terminal Tetratricopeptide repeat (TPR) region of YbbN and similar motifs	NA|312aa|down_9|NZ_CP022899.1_818575_819511_+	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase
GCF_003354725.1_ASM335472v1	NZ_CP022899	Staphylococcus aureus strain 143 chromosome, complete genome	2	864985-865064	2	CRISPRCasFinder	no		cas3,csa3,DEDDh,DinG,WYL	Orphan	CCGTCAGCTTCTGTGTTGGGGCCC	24	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,DEDDh,DinG,WYL	NA,NA	NA|187aa|up_9|NZ_CP022899.1_857959_858520_+	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]	NA|206aa|up_8|NZ_CP022899.1_858592_859210_-	COG1279, COG1279, Lysine efflux permease [General function prediction only]	NA|165aa|up_7|NZ_CP022899.1_859365_859860_-	pfam13420, Acetyltransf_4, Acetyltransferase (GNAT) domain	NA|141aa|up_6|NZ_CP022899.1_860258_860681_-	TIGR03561, organ_hyd_perox, peroxiredoxin, Ohr subfamily	NA|239aa|up_5|NZ_CP022899.1_860828_861545_+	PRK13575, PRK13575, type I 3-dehydroquinate dehydratase	NA|180aa|up_4|NZ_CP022899.1_861627_862167_+	cd02135, YdjA-like, nitroreductase family protein similar to Escherichia coli YdjA	NA|107aa|up_3|NZ_CP022899.1_862316_862637_-	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|119aa|up_2|NZ_CP022899.1_862780_863137_+	cd03036, ArsC_like, Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC	NA|127aa|up_1|NZ_CP022899.1_863294_863675_+	PRK01202, PRK01202, glycine cleavage system protein GcvH	NA|293aa|up_0|NZ_CP022899.1_863852_864731_+	COG3878, COG3878, Uncharacterized protein conserved in bacteria [Function unknown]	NA|129aa|down_0|NZ_CP022899.1_865321_865708_+	COG1658, COG1658, Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair]	NA|99aa|down_1|NZ_CP022899.1_865700_865997_+	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|342aa|down_2|NZ_CP022899.1_866246_867272_+	COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]	NA|232aa|down_3|NZ_CP022899.1_867264_867960_+	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism]	NA|274aa|down_4|NZ_CP022899.1_867977_868799_+	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]	NA|65aa|down_5|NZ_CP022899.1_869613_869808_+	COG3237, COG3237, Uncharacterized protein conserved in bacteria [Function unknown]	NA|284aa|down_6|NZ_CP022899.1_870041_870893_-	COG2035, COG2035, Predicted membrane protein [Function unknown]	NA|254aa|down_7|NZ_CP022899.1_871220_871982_+	COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]	NA|436aa|down_8|NZ_CP022899.1_872079_873387_+	COG0719, SufB, Cysteine desulfurase activator SufB [Posttranslational modification, protein turnover, chaperones]	NA|417aa|down_9|NZ_CP022899.1_873492_874743_+	TIGR01979, Probable_cysteine_desulfurase, cysteine desulfurases, SufSfamily
GCF_003354725.1_ASM335472v1	NZ_CP022899	Staphylococcus aureus strain 143 chromosome, complete genome	3	914105-914190	3	CRISPRCasFinder	no		cas3,csa3,DEDDh,DinG,WYL	Orphan	AAAGTCAGCTTACAATAATGTGCAAGTTGG	30	1	2	914135-914160|914135-914160	NZ_CP022899.1_2112336-2112361|NZ_CP022899.1_2172420-2172445	NA	1	1	Orphan	cas3,csa3,DEDDh,DinG,WYL	NA,NA	NA|499aa|up_9|NZ_CP022899.1_902994_904491_-	PRK07691, PRK07691, putative monovalent cation/H+ antiporter subunit D; Reviewed	NA|110aa|up_8|NZ_CP022899.1_904483_904813_-	PRK08600, PRK08600, putative monovalent cation/H+ antiporter subunit C; Reviewed	NA|143aa|up_7|NZ_CP022899.1_904824_905253_-	PRK12573, PRK12573, Na(+)/H(+) antiporter subunit B	NA|802aa|up_6|NZ_CP022899.1_905245_907651_-	PRK12645, PRK12645, monovalent cation/H+ antiporter subunit A; Reviewed	NA|128aa|up_5|NZ_CP022899.1_907781_908165_-	pfam08810, KapB, Kinase associated protein B	NA|198aa|up_4|NZ_CP022899.1_908228_908822_+	cd01927, cyclophilin_WD40, cyclophilin_WD40: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a WD40 domain	NA|126aa|up_3|NZ_CP022899.1_909236_909614_+	COG1098, VacB, Predicted RNA binding protein (contains ribosomal protein S1 domain) [Translation, ribosomal structure and biogenesis]	NA|376aa|up_2|NZ_CP022899.1_909975_911103_+	cd04735, OYE_like_4_FMN, Old yellow enzyme (OYE)-related FMN binding domain, group 4	NA|397aa|up_1|NZ_CP022899.1_911410_912601_+	PRK04073, rocD, ornithine--oxo-acid transaminase; Provisional	NA|415aa|up_0|NZ_CP022899.1_912709_913954_+	COG0334, GdhA, Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]	NA|310aa|down_0|NZ_CP022899.1_914348_915278_-	cd08601, GDPD_SaGlpQ_like, Glycerophosphodiester phosphodiesterase domain of Staphylococcus aureus and similar proteins	NA|460aa|down_1|NZ_CP022899.1_915519_916899_-	PRK00855, PRK00855, argininosuccinate lyase; Provisional	NA|402aa|down_2|NZ_CP022899.1_916888_918094_-	PRK00509, PRK00509, argininosuccinate synthase; Provisional	NA|444aa|down_3|NZ_CP022899.1_918444_919776_+	PRK14097, pgi, glucose-6-phosphate isomerase; Provisional	NA|192aa|down_4|NZ_CP022899.1_920101_920677_+	COG0398, COG0398, Uncharacterized conserved protein [Function unknown]	NA|175aa|down_5|NZ_CP022899.1_920681_921206_+	TIGR02227, Inactive_signal_peptidase_IA	NA|192aa|down_6|NZ_CP022899.1_921221_921797_+	TIGR02227, Inactive_signal_peptidase_IA	NA|1159aa|down_7|NZ_CP022899.1_921956_925433_+	TIGR02773, ATP-dependent_helicase/deoxyribonuclease_subunit_B, helicase-exonuclease AddAB, AddB subunit	NA|1218aa|down_8|NZ_CP022899.1_925433_929087_+	TIGR02785, ATP-dependent_helicase/nuclease_subunit_A, helicase-exonuclease AddAB, AddA subunit, Firmicutes type	NA|301aa|down_9|NZ_CP022899.1_929252_930155_+	COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism]
GCF_003354725.1_ASM335472v1	NZ_CP022899	Staphylococcus aureus strain 143 chromosome, complete genome	4	1215355-1215447	4	CRISPRCasFinder	no	cas3	cas3,csa3,DEDDh,DinG,WYL	Unclear	TAAGAAACAGTAATCAATAAATTGATAACT	30	0	0	NA	NA	NA	1	1	Unclear	cas3,csa3,DEDDh,DinG,WYL	NA,NA	NA|215aa|up_9|NZ_CP022899.1_1205229_1205874_+	COG0036, Rpe, Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]	NA|214aa|up_8|NZ_CP022899.1_1205880_1206522_+	COG1564, THI80, Thiamine pyrophosphokinase [Coenzyme metabolism]	NA|63aa|up_7|NZ_CP022899.1_1206902_1207091_-	PRK00359, rpmB, 50S ribosomal protein L28; Reviewed	NA|125aa|up_6|NZ_CP022899.1_1207533_1207908_+	COG1302, COG1302, Uncharacterized protein conserved in bacteria [Function unknown]	NA|549aa|up_5|NZ_CP022899.1_1207922_1209569_+	COG1461, COG1461, Predicted kinase related to dihydroxyacetone kinase [General function prediction only]	cas3|687aa|up_4|NZ_CP022899.1_1209758_1211819_+	PRK10917, PRK10917, ATP-dependent DNA helicase RecG; Provisional	NA|191aa|up_3|NZ_CP022899.1_1212021_1212594_+	PRK04424, PRK04424, transcription factor FapR	NA|329aa|up_2|NZ_CP022899.1_1212598_1213585_+	PRK05331, PRK05331, phosphate acyltransferase PlsX	NA|309aa|up_1|NZ_CP022899.1_1213577_1214504_+	COG0331, FabD, (acyl-carrier-protein) S-malonyltransferase [Lipid metabolism]	NA|245aa|up_0|NZ_CP022899.1_1214496_1215231_+	PRK05557, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Validated	NA|78aa|down_0|NZ_CP022899.1_1215536_1215770_+	PRK00982, acpP, acyl carrier protein; Provisional	NA|244aa|down_1|NZ_CP022899.1_1215885_1216617_+	PRK00102, rnc, ribonuclease III; Reviewed	NA|1189aa|down_2|NZ_CP022899.1_1216763_1220330_+	COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	NA|417aa|down_3|NZ_CP022899.1_1220329_1221580_+	PRK10416, PRK10416, signal recognition particle-docking protein FtsY; Provisional	NA|111aa|down_4|NZ_CP022899.1_1221566_1221899_+	PRK00118, PRK00118, putative DNA-binding protein; Validated	NA|456aa|down_5|NZ_CP022899.1_1221924_1223292_+	PRK10867, PRK10867, signal recognition particle protein; Provisional	NA|92aa|down_6|NZ_CP022899.1_1223726_1224002_+	COG0228, RpsP, Ribosomal protein S16 [Translation, ribosomal structure and biogenesis]	NA|168aa|down_7|NZ_CP022899.1_1224189_1224693_+	PRK00122, rimM, 16S rRNA-processing protein RimM; Provisional	NA|246aa|down_8|NZ_CP022899.1_1224692_1225430_+	PRK00026, trmD, tRNA (guanine-N(1)-)-methyltransferase; Reviewed	NA|117aa|down_9|NZ_CP022899.1_1225532_1225883_+	PRK05338, rplS, 50S ribosomal protein L19; Provisional
GCF_003354725.1_ASM335472v1	NZ_CP022899	Staphylococcus aureus strain 143 chromosome, complete genome	5	1938232-1938359	5	CRISPRCasFinder	no		cas3,csa3,DEDDh,DinG,WYL	Orphan	AATTATGGAGCGGAAGATAGGATTTACACCTATACCTC	38	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,DEDDh,DinG,WYL	NA|132aa|up_7|NZ_CP022899.1_1930391_1930787_-,NA|51aa|up_6|NZ_CP022899.1_1931387_1931540_-,NA	NA|274aa|up_9|NZ_CP022899.1_1927533_1928355_+	COG0564, RluA, Pseudouridylate synthases, 23S RNA-specific [Translation, ribosomal structure and biogenesis]	NA|462aa|up_8|NZ_CP022899.1_1928810_1930196_-	PRK00485, fumC, fumarate hydratase; Reviewed	NA|132aa|up_7|NZ_CP022899.1_1930391_1930787_-	NA	NA|51aa|up_6|NZ_CP022899.1_1931387_1931540_-	NA	NA|200aa|up_5|NZ_CP022899.1_1931564_1932164_-	COG0363, NagB, 6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase [Carbohydrate transport and metabolism]	NA|157aa|up_4|NZ_CP022899.1_1932322_1932793_-	COG0219, CspR, Predicted rRNA methylase (SpoU class) [Translation, ribosomal structure and biogenesis]	NA|381aa|up_3|NZ_CP022899.1_1932797_1933940_-	TIGR00276, iron-sulfur_cluster-binding_protein, epoxyqueuosine reductase	NA|243aa|up_2|NZ_CP022899.1_1934075_1934804_-	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]	NA|486aa|up_1|NZ_CP022899.1_1934790_1936248_-	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|354aa|up_0|NZ_CP022899.1_1936506_1937568_-	COG3641, PfoR, Predicted membrane protein, putative toxin regulator [General function prediction only]	NA|149aa|down_0|NZ_CP022899.1_1946397_1946844_-	COG0735, Fur, Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]	NA|317aa|down_1|NZ_CP022899.1_1946940_1947891_-	cd12155, PGDH_1, Phosphoglycerate Dehydrogenase, 2-hydroxyacid dehydrogenase family	NA|152aa|down_2|NZ_CP022899.1_1947896_1948352_-	COG1225, Bcp, Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]	NA|430aa|down_3|NZ_CP022899.1_1948432_1949722_+	PRK12389, PRK12389, glutamate-1-semialdehyde aminotransferase; Provisional	NA|365aa|down_4|NZ_CP022899.1_1950014_1951109_+	COG4129, COG4129, Predicted membrane protein [Function unknown]	NA|579aa|down_5|NZ_CP022899.1_1951299_1953036_-	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|181aa|down_6|NZ_CP022899.1_1953326_1953869_-	PRK13662, PRK13662, hypothetical protein; Provisional	NA|346aa|down_7|NZ_CP022899.1_1954171_1955209_-	COG1194, MutY, A/G-specific DNA glycosylase [DNA replication, recombination, and repair]	NA|326aa|down_8|NZ_CP022899.1_1955360_1956338_+	COG1988, COG1988, Predicted membrane-bound metal-dependent hydrolases [General function prediction only]	NA|279aa|down_9|NZ_CP022899.1_1956598_1957435_-	COG1682, TagG, ABC-type polysaccharide/polyol phosphate export systems, permease component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
GCF_003354725.1_ASM335472v1	NZ_CP022899	Staphylococcus aureus strain 143 chromosome, complete genome	6	2021544-2021735	1	CRT	no	DEDDh	cas3,csa3,DEDDh,DinG,WYL	Unclear	NNTCTNTGTTGGGGCCCNCACC	22	2	9	2021565-2021601|2021623-2021656|2021623-2021656|2021623-2021656|2021623-2021656|2021623-2021656|2021623-2021656|2021623-2021656|2021623-2021656	NZ_CP022899.1_819873-819909|NZ_CP022899.1_257717-257684|NZ_CP022899.1_334391-334358|NZ_CP022899.1_773475-773442|NZ_CP022899.1_806646-806679|NZ_CP022899.1_1066157-1066190|NZ_CP022899.1_1760248-1760215|NZ_CP022899.1_2336586-2336619|NZ_CP022899.1_2479613-2479580	NA	3	3	Orphan	cas3,csa3,DEDDh,DinG,WYL	NA|37aa|up_9|NZ_CP022899.1_2012949_2013060_-,NA|31aa|up_5|NZ_CP022899.1_2016065_2016158_-,NA|49aa|down_0|NZ_CP022899.1_2022039_2022186_-	NA|37aa|up_9|NZ_CP022899.1_2012949_2013060_-	NA	NA|244aa|up_8|NZ_CP022899.1_2013145_2013877_-	COG3442, COG3442, Predicted glutamine amidotransferase [General function prediction only]	NA|438aa|up_7|NZ_CP022899.1_2013878_2015192_-	COG0769, MurE, UDP-N-acetylmuramyl tripeptide synthase [Cell envelope biogenesis, outer membrane]	NA|167aa|up_6|NZ_CP022899.1_2015483_2015984_+	COG1528, Ftn, Ferritin-like protein [Inorganic ion transport and metabolism]	NA|31aa|up_5|NZ_CP022899.1_2016065_2016158_-	NA	DEDDh|185aa|up_4|NZ_CP022899.1_2016374_2016929_+	cd06130, DNA_pol_III_epsilon_like, an uncharacterized bacterial subgroup of the DEDDh 3'-5' exonuclease domain family with similarity to the epsilon subunit of DNA polymerase III	NA|357aa|up_3|NZ_CP022899.1_2016995_2018066_-	PRK02406, PRK02406, DNA polymerase IV; Validated	NA|177aa|up_2|NZ_CP022899.1_2018312_2018843_-	pfam11667, DUF3267, Putative zincin peptidase	NA|454aa|up_1|NZ_CP022899.1_2019012_2020374_-	COG2265, TrmA, SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]	NA|316aa|up_0|NZ_CP022899.1_2020454_2021402_-	PRK13337, PRK13337, putative lipid kinase; Reviewed	NA|49aa|down_0|NZ_CP022899.1_2022039_2022186_-	NA	NA|476aa|down_1|NZ_CP022899.1_2022224_2023652_-	PRK05477, gatB, Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB	NA|486aa|down_2|NZ_CP022899.1_2023664_2025122_-	PRK00012, gatA, Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA	NA|101aa|down_3|NZ_CP022899.1_2025123_2025426_-	PRK00034, gatC, Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC	NA|513aa|down_4|NZ_CP022899.1_2025792_2027331_+	TIGR02121, Osmoregulated_proline_transporter, sodium/proline symporter	NA|400aa|down_5|NZ_CP022899.1_2027419_2028619_-	COG4851, CamS, Protein involved in sex pheromone biosynthesis [General function prediction only]	NA|668aa|down_6|NZ_CP022899.1_2028631_2030635_-	PRK07956, ligA, NAD-dependent DNA ligase LigA; Validated	NA|731aa|down_7|NZ_CP022899.1_2030638_2032831_-	TIGR01073, ATP-dependent_DNA_helicase_PcrA, ATP-dependent DNA helicase PcrA	NA|231aa|down_8|NZ_CP022899.1_2032827_2033520_-	COG1646, COG1646, Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]	NA|101aa|down_9|NZ_CP022899.1_2033702_2034005_-	COG4496, COG4496, Uncharacterized protein conserved in bacteria [Function unknown]
GCF_003354725.1_ASM335472v1	NZ_CP022899	Staphylococcus aureus strain 143 chromosome, complete genome	7	2088325-2088413	6	CRISPRCasFinder	no		cas3,csa3,DEDDh,DinG,WYL	Orphan	GTTTTTGACTGACTTCTCAATCA	23	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,DEDDh,DinG,WYL	NA|127aa|up_8|NZ_CP022899.1_2083375_2083756_-,NA|128aa|up_4|NZ_CP022899.1_2087041_2087425_-,NA|68aa|up_3|NZ_CP022899.1_2087426_2087630_-,NA|52aa|up_2|NZ_CP022899.1_2087614_2087770_-,NA	NA|208aa|up_9|NZ_CP022899.1_2082755_2083379_-	pfam16560, SAPI, Putative mobile pathogenicity island	NA|127aa|up_8|NZ_CP022899.1_2083375_2083756_-	NA	NA|570aa|up_7|NZ_CP022899.1_2084067_2085777_-	COG5519, COG5519, Superfamily II helicase and inactivated derivatives [DNA replication, recombination, and repair]	NA|290aa|up_6|NZ_CP022899.1_2085790_2086660_-	smart00942, PriCT_1, Primase C terminal 1 (PriCT-1)	NA|106aa|up_5|NZ_CP022899.1_2086723_2087041_-	pfam07342, DUF1474, Protein of unknown function (DUF1474)	NA|128aa|up_4|NZ_CP022899.1_2087041_2087425_-	NA	NA|68aa|up_3|NZ_CP022899.1_2087426_2087630_-	NA	NA|52aa|up_2|NZ_CP022899.1_2087614_2087770_-	NA	NA|106aa|up_1|NZ_CP022899.1_2087766_2088084_-	TIGR01764, Probable_excisionase, DNA binding domain, excisionase family	NA|73aa|up_0|NZ_CP022899.1_2088088_2088307_-	smart00530, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|225aa|down_0|NZ_CP022899.1_2088479_2089154_+	pfam13443, HTH_26, Cro/C1-type HTH DNA-binding domain	NA|391aa|down_1|NZ_CP022899.1_2089167_2090340_+	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|539aa|down_2|NZ_CP022899.1_2090408_2092025_-	PRK00013, groEL, chaperonin GroEL; Reviewed	NA|95aa|down_3|NZ_CP022899.1_2092100_2092385_-	PRK00364, groES, co-chaperonin GroES; Reviewed	NA|248aa|down_4|NZ_CP022899.1_2092559_2093303_+	pfam02517, Abi, CAAX protease self-immunity	NA|405aa|down_5|NZ_CP022899.1_2093327_2094542_-	PRK10819, PRK10819, transport protein TonB; Provisional	NA|209aa|down_6|NZ_CP022899.1_2094738_2095365_+	COG3560, FMR2, Predicted oxidoreductase related to nitroreductase [General function prediction only]	NA|45aa|down_7|NZ_CP022899.1_2097112_2097247_-	PRK14752, PRK14752, delta-lysin family phenol-soluble modulin	NA|188aa|down_8|NZ_CP022899.1_2097482_2098046_+	smart00793, AgrB, Accessory gene regulator B	NA|47aa|down_9|NZ_CP022899.1_2098049_2098190_+	smart00794, AgrD, Staphylococcal AgrD protein
GCF_003354725.1_ASM335472v1	NZ_CP022899	Staphylococcus aureus strain 143 chromosome, complete genome	8	2296615-2296740	7	CRISPRCasFinder	no		cas3,csa3,DEDDh,DinG,WYL	Orphan	CCTCTTTACTCGAAAGCTCACAAAACTCTTGATATCA	37	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,DEDDh,DinG,WYL	NA|56aa|up_8|NZ_CP022899.1_2287021_2287189_+,NA|61aa|up_1|NZ_CP022899.1_2295537_2295720_-,NA	NA|139aa|up_9|NZ_CP022899.1_2286362_2286779_-	cd01109, HTH_YyaN, Helix-Turn-Helix DNA binding domain of the MerR-like transcription regulators YyaN and YraB	NA|56aa|up_8|NZ_CP022899.1_2287021_2287189_+	NA	NA|809aa|up_7|NZ_CP022899.1_2287185_2289612_+	cd01083, GAG_Lyase, Glycosaminoglycan (GAG) polysaccharide lyase family	NA|285aa|up_6|NZ_CP022899.1_2289671_2290526_-	pfam01551, Peptidase_M23, Peptidase family M23	NA|272aa|up_5|NZ_CP022899.1_2290736_2291552_-	cd02605, HAD_SPP, sucrose-phosphatase, similar to Synechocystis sp PCC 6803 SPP	NA|142aa|up_4|NZ_CP022899.1_2291846_2292272_+	pfam03642, MAP, MAP domain	NA|235aa|up_3|NZ_CP022899.1_2292662_2293367_-	COG3527, AlsD, Alpha-acetolactate decarboxylase [Secondary metabolites biosynthesis, transport, and catabolism]	NA|555aa|up_2|NZ_CP022899.1_2293403_2295068_-	PRK08617, PRK08617, acetolactate synthase AlsS	NA|61aa|up_1|NZ_CP022899.1_2295537_2295720_-	NA	NA|60aa|up_0|NZ_CP022899.1_2296369_2296549_-	PRK09775, PRK09775, type II toxin-antitoxin system HipA family toxin YjjJ	NA|479aa|down_0|NZ_CP022899.1_2296797_2298234_-	COG2865, COG2865, Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen [Transcription]	NA|133aa|down_1|NZ_CP022899.1_2298582_2298981_-	PRK00132, rpsI, 30S ribosomal protein S9; Reviewed	NA|146aa|down_2|NZ_CP022899.1_2298994_2299432_-	PRK09216, rplM, 50S ribosomal protein L13; Reviewed	NA|265aa|down_3|NZ_CP022899.1_2299680_2300475_-	PRK00021, truA, tRNA pseudouridine(38-40) synthase TruA	NA|269aa|down_4|NZ_CP022899.1_2300479_2301286_-	COG0619, CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters [Inorganic ion transport and metabolism]	NA|287aa|down_5|NZ_CP022899.1_2301275_2302136_-	PRK13646, cbiO, energy-coupling factor transporter ATPase	NA|270aa|down_6|NZ_CP022899.1_2302132_2302942_-	PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional	NA|523aa|down_7|NZ_CP022899.1_2303317_2304885_+	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|123aa|down_8|NZ_CP022899.1_2305137_2305506_-	PRK05591, rplQ, 50S ribosomal protein L17; Validated	NA|315aa|down_9|NZ_CP022899.1_2305522_2306467_-	PRK05182, PRK05182, DNA-directed RNA polymerase subunit alpha; Provisional
GCF_003354725.1_ASM335472v1	NZ_CP022899	Staphylococcus aureus strain 143 chromosome, complete genome	9	2336622-2336702	8	CRISPRCasFinder	no		cas3,csa3,DEDDh,DinG,WYL	Orphan	TCTATGTTGGGGCCCCGCCAACTTG	25	1	6	2336647-2336677|2336647-2336677|2336647-2336677|2336647-2336677|2336647-2336677|2336647-2336677	NZ_CP022899.1_1066220-1066250|NZ_CP022899.1_1640303-1640333|NZ_CP022899.1_819997-820027|NZ_CP022899.1_869296-869266|NZ_CP022899.1_914126-914096|NZ_CP022899.1_2011007-2011037	NA	1	1	Orphan	cas3,csa3,DEDDh,DinG,WYL	NA|55aa|up_9|NZ_CP022899.1_2327151_2327316_+,NA|106aa|up_8|NZ_CP022899.1_2327560_2327878_+,NA|84aa|up_5|NZ_CP022899.1_2333002_2333254_+,NA|57aa|up_0|NZ_CP022899.1_2336394_2336565_+,NA	NA|55aa|up_9|NZ_CP022899.1_2327151_2327316_+	NA	NA|106aa|up_8|NZ_CP022899.1_2327560_2327878_+	NA	NA|1056aa|up_7|NZ_CP022899.1_2328064_2331232_-	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms]	NA|422aa|up_6|NZ_CP022899.1_2331348_2332614_-	COG2348, COG2348, Peptidoglycan interpeptide bridge formation enzyme [Cell wall/membrane/envelope biogenesis]	NA|84aa|up_5|NZ_CP022899.1_2333002_2333254_+	NA	NA|255aa|up_4|NZ_CP022899.1_2333245_2334010_-	pfam13468, Glyoxalase_3, Glyoxalase-like domain	NA|147aa|up_3|NZ_CP022899.1_2334172_2334613_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|404aa|up_2|NZ_CP022899.1_2334605_2335817_+	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily	NA|117aa|up_1|NZ_CP022899.1_2335918_2336269_-	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|57aa|up_0|NZ_CP022899.1_2336394_2336565_+	NA	NA|341aa|down_0|NZ_CP022899.1_2336845_2337868_-	TIGR02666, Cyclic_pyranopterin_monophosphate_synthase, molybdenum cofactor biosynthesis protein A, bacterial	NA|200aa|down_1|NZ_CP022899.1_2337887_2338487_-	PRK00317, mobA, molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed	NA|78aa|down_2|NZ_CP022899.1_2338493_2338727_-	cd00754, Ubl_MoaD, ubiquitin-like (Ubl) domain found in molybdenum cofactor biosynthesis protein D (MoaD) and similar proteins	NA|149aa|down_3|NZ_CP022899.1_2338732_2339179_-	COG0314, MoaE, Molybdopterin converting factor, large subunit [Coenzyme metabolism]	NA|162aa|down_4|NZ_CP022899.1_2339192_2339678_-	COG1763, MobB, Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]	NA|420aa|down_5|NZ_CP022899.1_2339674_2340934_-	cd00887, MoeA, MoeA family	NA|165aa|down_6|NZ_CP022899.1_2340996_2341491_+	PRK09364, moaC, cyclic pyranopterin monophosphate synthase MoaC	NA|169aa|down_7|NZ_CP022899.1_2341492_2341999_-	COG0521, MoaB, Molybdopterin biosynthesis enzymes [Coenzyme metabolism]	NA|335aa|down_8|NZ_CP022899.1_2342027_2343032_-	PRK07688, PRK07688, thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated	NA|202aa|down_9|NZ_CP022899.1_2343199_2343805_-	COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
