The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP022899	Staphylococcus aureus strain 143 chromosome, complete genome	2813908	216589	287294	2813908	protease,transposase,holin	Staphylococcus_virus(20.0%)	58	NA	NA
WP_001801269.1|216589_217732_+|protease	PrsW family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_000556257.1|218042_219455_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_000215220.1|219715_220072_-	DUF488 domain-containing protein	NA	NA	NA	NA	NA
WP_000773985.1|220228_220402_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000954802.1|220426_221572_-	nitric oxide dioxygenase	NA	NA	NA	NA	NA
WP_001791329.1|221726_221834_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001031872.1|222144_223098_+	L-lactate dehydrogenase	NA	NA	NA	NA	NA
WP_115283814.1|223418_224948_-	PTS transporter subunit EIIC	NA	A0A2I7SAJ6	Vibrio_phage	52.0	5.3e-11
WP_000823232.1|225311_226247_+	nucleoside hydrolase	NA	NA	NA	NA	NA
WP_000531477.1|228665_229133_+	PTS sugar transporter subunit IIA	NA	NA	NA	NA	NA
WP_000815795.1|229155_229434_+	PTS sugar transporter subunit IIB	NA	NA	NA	NA	NA
WP_000120115.1|229660_230920_+	PTS galactitol transporter subunit IIC	NA	NA	NA	NA	NA
WP_000646194.1|230937_231993_+	zinc-binding dehydrogenase	NA	NA	NA	NA	NA
WP_000230358.1|231994_232141_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000645611.1|232164_233208_+	galactitol-1-phosphate 5-dehydrogenase	NA	E3SJ82	Synechococcus_phage	24.6	6.0e-14
WP_000638469.1|233735_234452_+	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	NA	NA	NA	NA	NA
WP_000610169.1|234444_235470_+	alcohol dehydrogenase catalytic domain-containing protein	NA	NA	NA	NA	NA
WP_000169001.1|235491_237186_+	CDP-glycerol glycerophosphotransferase family protein	NA	NA	NA	NA	NA
WP_000598264.1|238155_239325_+	CDP-glycerol glycerophosphotransferase family protein	NA	NA	NA	NA	NA
WP_000872486.1|239600_240317_+	D-ribitol-5-phosphate cytidylyltransferase	NA	NA	NA	NA	NA
WP_000610203.1|240309_241335_+	alcohol dehydrogenase catalytic domain-containing protein	NA	NA	NA	NA	NA
WP_000240920.1|241356_243045_+	CDP-glycerol glycerophosphotransferase family protein	NA	NA	NA	NA	NA
WP_000975347.1|243077_244802_+	glycosyltransferase family 2 protein	NA	A0A1V0SAH6	Catovirus	37.4	2.1e-11
WP_000277709.1|245087_246734_+|transposase	IS1182-like element ISSau3 family transposase	transposase	A0ZS58	Staphylococcus_virus	99.8	7.9e-295
WP_000608835.1|246852_247527_+	iron-sulfur cluster repair di-iron protein ScdA	NA	NA	NA	NA	NA
WP_000925396.1|247792_249532_+	sensor histidine kinase	NA	Q9EYF3	Enterobacteria_phage	31.5	2.0e-62
WP_000645453.1|249534_250275_+	DNA-binding response regulator	NA	NA	NA	NA	NA
WP_001792906.1|250387_250831_+|holin	antiholin-like murein hydrolase modulator LrgA	holin	NA	NA	NA	NA
WP_000607067.1|250823_251525_+|holin	antiholin-like protein LrgB	holin	NA	NA	NA	NA
WP_000062636.1|251865_254157_+	nitric oxide reductase	NA	NA	NA	NA	NA
WP_000922328.1|254382_255087_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000527262.1|255233_256025_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000163995.1|256040_257477_+	6-phospho-beta-glucosidase	NA	A0A0B5JD41	Pandoravirus	26.0	1.3e-30
WP_000031265.1|257971_258733_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_031788454.1|258751_258886_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000182742.1|258983_259898_-	ribokinase	NA	NA	NA	NA	NA
WP_000747873.1|259925_260330_-	D-ribose pyranase	NA	NA	NA	NA	NA
WP_000029204.1|260344_261226_-	ribose transporter RbsU	NA	NA	NA	NA	NA
WP_000757884.1|261457_262456_-	LacI family transcriptional regulator	NA	NA	NA	NA	NA
WP_001159764.1|262835_263228_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001066551.1|263356_264733_-	MFS transporter	NA	NA	NA	NA	NA
WP_000337379.1|264966_265959_+	linear amide C-N hydrolase	NA	NA	NA	NA	NA
WP_000736790.1|266284_267235_+	glycine-glycine endopeptidase LytM	NA	V5R8R0	Arthrobacter_phage	42.7	1.5e-16
WP_000570080.1|267286_267946_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	32.0	5.8e-23
WP_000806123.1|267959_268880_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_000848773.1|268876_270043_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_000038530.1|270110_271634_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000751212.1|271963_272857_-	CHAP domain-containing protein	NA	NA	NA	NA	NA
WP_001240826.1|273104_273398_+	WXG100 family type VII secretion effector EsxA	NA	NA	NA	NA	NA
WP_000277741.1|273691_275338_+|transposase	IS1182-like element ISSau3 family transposase	transposase	A0ZS58	Staphylococcus_virus	100.0	3.5e-295
WP_000728940.1|275396_278426_+	type VII secretion protein EsaA	NA	NA	NA	NA	NA
WP_000928937.1|278425_278884_+	type VII secretion protein EssA	NA	NA	NA	NA	NA
WP_001071606.1|278855_279098_+	type VII secretion protein EsaB	NA	NA	NA	NA	NA
WP_000240329.1|279110_280445_+	type VII secretion protein EssB	NA	NA	NA	NA	NA
WP_000549309.1|280466_284915_+	type VII secretion protein EssC	NA	V5UPA0	Mycobacterium_phage	23.7	1.7e-28
WP_000593835.1|284917_285184_+	YwqI/YxiC family protein	NA	NA	NA	NA	NA
WP_000066177.1|285206_285602_+	DUF5082 family protein	NA	NA	NA	NA	NA
WP_000540848.1|285623_287294_+|transposase	transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP022899	Staphylococcus aureus strain 143 chromosome, complete genome	2813908	357867	373797	2813908	coat,terminase,integrase	Staphylococcus_phage(90.0%)	25	359403:359420	374504:374521
WP_001052483.1|357867_358059_-	hypothetical protein	NA	U3PCX8	Staphylococcus_phage	80.0	4.9e-23
WP_001261460.1|358302_358599_+	30S ribosomal protein S6	NA	NA	NA	NA	NA
WP_000934799.1|358619_359123_+	single-stranded DNA-binding protein	NA	A0A1W6JPL9	Staphylococcus_phage	74.7	1.2e-60
WP_000897044.1|359174_359417_+	30S ribosomal protein S18	NA	NA	NA	NA	NA
359403:359420	attL	AAAGAAGAACAATAATAT	NA	NA	NA	NA
WP_000400841.1|359648_360368_-	type II toxin-antitoxin system PemK/MazF family toxin	NA	Q4ZE81	Staphylococcus_phage	29.8	3.7e-23
WP_000270135.1|360480_361695_-|integrase	site-specific integrase	integrase	Q4ZE80	Staphylococcus_phage	97.3	3.3e-221
WP_000230361.1|361855_362479_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_001611932.1|362627_362792_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_001138305.1|362792_363065_+	winged helix-turn-helix domain-containing protein	NA	Q4ZE77	Staphylococcus_phage	94.4	1.2e-43
WP_000784892.1|363076_363250_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001231376.1|363216_363420_+	hypothetical protein	NA	A0A1W6JQF4	Staphylococcus_phage	98.5	2.0e-30
WP_000403837.1|363421_363805_+	hypothetical protein	NA	A0A1W6JQI7	Staphylococcus_phage	96.1	4.8e-62
WP_001103967.1|363805_364132_+	DUF1474 family protein	NA	Q4ZE75	Staphylococcus_phage	96.3	3.5e-53
WP_001002709.1|364196_365066_+	hypothetical protein	NA	Q4ZE74	Staphylococcus_phage	96.2	5.3e-165
WP_000447468.1|365079_366789_+	DUF927 domain-containing protein	NA	Q4ZE73	Staphylococcus_phage	92.8	8.2e-303
WP_000356942.1|367098_367479_+	hypothetical protein	NA	Q4ZE71	Staphylococcus_phage	96.8	1.7e-67
WP_001019762.1|367475_368117_+	hypothetical protein	NA	Q4ZE67	Staphylococcus_phage	92.5	4.7e-110
WP_001288442.1|368824_369169_+	hypothetical protein	NA	Q4ZE66	Staphylococcus_phage	91.7	1.3e-50
WP_000214170.1|369199_369853_+	hypothetical protein	NA	Q4ZE82	Staphylococcus_phage	99.5	7.6e-116
WP_000771361.1|369905_370433_+|coat	spore coat protein	coat	Q4ZE87	Staphylococcus_phage	100.0	6.8e-91
WP_001656917.1|370564_370777_+	hypothetical protein	NA	Q4ZE86	Staphylococcus_phage	97.1	5.4e-31
WP_001293071.1|370773_371343_+|terminase	terminase small subunit	terminase	Q4ZE85	Staphylococcus_phage	98.4	4.6e-101
WP_000801980.1|371619_372588_+	Abi family protein	NA	A0A0H4U080	Erysipelothrix_phage	27.3	2.7e-24
WP_073392942.1|372729_373167_+	DUF3102 domain-containing protein	NA	A0A2H4JAH5	uncultured_Caudovirales_phage	58.2	9.8e-27
WP_000813311.1|373284_373797_+	hypothetical protein	NA	Q4ZE83	Staphylococcus_phage	100.0	1.4e-69
374504:374521	attR	AAAGAAGAACAATAATAT	NA	NA	NA	NA
>prophage 3
NZ_CP022899	Staphylococcus aureus strain 143 chromosome, complete genome	2813908	666748	717745	2813908	bacteriocin,transposase	Staphylococcus_phage(28.57%)	48	NA	NA
WP_000121211.1|666748_667696_-|transposase	IS30-like element ISSau1 family transposase	transposase	Q9MBM9	Staphylococcus_prophage	100.0	1.1e-184
WP_000980140.1|668188_669256_+	membrane protein	NA	NA	NA	NA	NA
WP_001030763.1|669406_670450_+	alpha/beta hydrolase	NA	L7RDF8	Acanthamoeba_polyphaga_moumouvirus	27.1	3.8e-16
WP_000198502.1|670778_671207_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000940129.1|671404_671911_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_000802949.1|672023_672947_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_001166499.1|672962_673637_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_001061270.1|673629_674670_+	sensor histidine kinase	NA	NA	NA	NA	NA
WP_000153733.1|674816_675578_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	35.0	3.2e-33
WP_000009406.1|675567_677457_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_000491755.1|678072_678690_+	DUF47 domain-containing protein	NA	NA	NA	NA	NA
WP_000120368.1|678705_679713_+	inorganic phosphate transporter	NA	NA	NA	NA	NA
WP_000731642.1|680299_681097_-	LysM peptidoglycan-binding domain-containing protein	NA	C1KFN7	Lactobacillus_virus	35.8	2.1e-06
WP_000081597.1|681457_682102_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001090984.1|685081_685441_+	HTH-type transcriptional regulator SarX	NA	NA	NA	NA	NA
WP_000532966.1|685630_686347_+	YebC/PmpR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_000833480.1|686346_686820_+	cupin	NA	A0A291AU44	Pandoravirus	38.7	4.6e-14
WP_031788497.1|686911_687028_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000865619.1|687172_687817_+	DUF402 domain-containing protein	NA	NA	NA	NA	NA
WP_000687413.1|687934_688801_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000367064.1|688932_690153_+	MFS transporter	NA	NA	NA	NA	NA
WP_000158021.1|690149_690617_+	DUF456 domain-containing protein	NA	NA	NA	NA	NA
WP_001105942.1|692124_692799_+|transposase	IS6-like element ISSau6 family transposase	transposase	A0A0N9RU54	Staphylococcus_phage	88.4	1.3e-113
WP_001035802.1|692833_693046_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000120605.1|693761_694076_+	As(III)-sensing metalloregulatory transcriptional repressor ArsR	NA	A0A2H4PQT4	Staphylococcus_phage	73.1	4.7e-39
WP_000153633.1|694075_695365_+	arsenite efflux transporter membrane subunit ArsB	NA	A0A2H4PQU3	Staphylococcus_phage	81.1	5.6e-187
WP_000358995.1|695382_695778_+	thioredoxin-dependent arsenate reductase	NA	A0A2H4PQT9	Staphylococcus_phage	86.3	8.5e-62
WP_000726502.1|696157_696451_+|bacteriocin	lactococcin 972 family bacteriocin	bacteriocin	NA	NA	NA	NA
WP_000713732.1|696525_698460_+|bacteriocin	bacteriocin-associated integral membrane family protein	bacteriocin	NA	NA	NA	NA
WP_000831610.1|698463_698775_+	YxeA family protein	NA	NA	NA	NA	NA
WP_000593106.1|698786_699413_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.7	6.1e-22
WP_000277741.1|699774_701421_+|transposase	IS1182-like element ISSau3 family transposase	transposase	A0ZS58	Staphylococcus_virus	100.0	3.5e-295
WP_001582045.1|701893_702220_+	recombinase	NA	NA	NA	NA	NA
WP_000273007.1|702286_702787_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000145511.1|703151_704012_+	replication initiation protein	NA	NA	NA	NA	NA
WP_000761344.1|704098_704440_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_001002795.1|704654_704750_-	type I toxin-antitoxin system Fst family toxin	NA	NA	NA	NA	NA
WP_000843733.1|705299_706043_-	DUF536 domain-containing protein	NA	NA	NA	NA	NA
WP_160175452.1|706350_706836_+	replication protein A	NA	NA	NA	NA	NA
WP_000998976.1|706832_707258_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000397995.1|708474_708798_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001791613.1|709026_709119_+	type I toxin-antitoxin system Fst family toxin	NA	NA	NA	NA	NA
WP_000377738.1|709420_710242_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000838599.1|710366_711362_+	YeiH family protein	NA	NA	NA	NA	NA
WP_000690626.1|711696_712272_-	recombinase family protein	NA	A0A0A7NPV4	Enterobacteria_phage	51.7	2.9e-42
WP_000069452.1|712538_714584_+	copper-translocating P-type ATPase CopB	NA	E4ZFI9	Streptococcus_phage	29.2	2.3e-65
WP_000277154.1|714598_716032_+	multi-copper oxidase Mco	NA	NA	NA	NA	NA
WP_000277738.1|716098_717745_-|transposase	IS1182 family transposase	transposase	A0ZS58	Staphylococcus_virus	98.4	1.0e-289
>prophage 4
NZ_CP022899	Staphylococcus aureus strain 143 chromosome, complete genome	2813908	751823	759643	2813908		Hokovirus(16.67%)	10	NA	NA
WP_000244416.1|751823_752879_-	HAMP domain-containing histidine kinase	NA	A0A1V0SGX0	Hokovirus	29.8	3.6e-14
WP_000149344.1|752878_753565_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_001037807.1|753539_754013_-	DoxX family protein	NA	NA	NA	NA	NA
WP_001093552.1|754354_754795_-	DM13 domain-containing protein	NA	NA	NA	NA	NA
WP_000637686.1|755074_755659_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001062968.1|755757_756471_-	7-carboxy-7-deazaguanine synthase QueE	NA	A0A1U9WRB6	Streptococcus_virus	43.5	6.5e-52
WP_000941336.1|756474_756894_-	6-carboxytetrahydropterin synthase QueD	NA	S4U060	uncultured_phage	28.7	6.3e-07
WP_000446724.1|756895_757564_-	7-cyano-7-deazaguanine synthase QueC	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	57.5	9.6e-66
WP_000604508.1|757914_758508_+	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	44.0	6.8e-39
WP_001217804.1|758491_759643_+	anthranilate synthase component I family protein	NA	S4VNU7	Pandoravirus	36.1	2.1e-23
>prophage 5
NZ_CP022899	Staphylococcus aureus strain 143 chromosome, complete genome	2813908	771615	785753	2813908		uncultured_Caudovirales_phage(50.0%)	13	NA	NA
WP_000663016.1|771615_772674_+	histidinol-phosphate transaminase	NA	A0A0H3TLT9	Faustovirus	26.5	5.7e-20
WP_000197262.1|772832_773375_+	5'-3'-deoxyribonucleotidase	NA	NA	NA	NA	NA
WP_000429002.1|773926_774844_-	diacylglycerol kinase family lipid kinase	NA	A0A1V0SBJ0	Catovirus	22.0	8.2e-07
WP_031788440.1|774934_775036_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000193750.1|775113_776619_-	peptide MFS transporter	NA	A0A0P0IY73	Acinetobacter_phage	32.2	2.0e-58
WP_000930016.1|776958_777459_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	E7DN65	Pneumococcus_phage	66.2	2.7e-52
WP_001068491.1|777478_778345_-	DMT family transporter	NA	NA	NA	NA	NA
WP_000692521.1|779146_779545_+	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	A0A2H4J545	uncultured_Caudovirales_phage	72.0	1.2e-52
WP_000855505.1|779507_781613_+	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A0A2H4J2N6	uncultured_Caudovirales_phage	91.7	0.0e+00
WP_000562498.1|781732_782704_+	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	A0A2H4J4P3	uncultured_Caudovirales_phage	91.3	4.2e-171
WP_000876311.1|783080_784052_+	ABC transporter permease	NA	A0A2H4IY97	uncultured_Caudovirales_phage	80.2	7.8e-141
WP_001245566.1|784038_784995_+	iron chelate uptake ABC transporter family permease subunit	NA	A0A2H4J116	uncultured_Caudovirales_phage	60.0	5.5e-06
WP_000616865.1|784991_785753_+	ABC transporter ATP-binding protein	NA	Q9EMR9	Amsacta_moorei_entomopoxvirus	30.1	7.2e-17
>prophage 6
NZ_CP022899	Staphylococcus aureus strain 143 chromosome, complete genome	2813908	955720	1004544	2813908	protease,transposase,holin,tRNA	Bacillus_virus(22.22%)	44	NA	NA
WP_000121211.1|955720_956668_-|transposase	IS30-like element ISSau1 family transposase	transposase	Q9MBM9	Staphylococcus_prophage	100.0	1.1e-184
WP_073392975.1|956782_958252_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_001067041.1|958302_959289_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	30.0	1.8e-15
WP_000427776.1|959291_960272_+	dipeptide ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	34.1	2.7e-16
WP_001574526.1|960264_960915_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_001180271.1|960926_961808_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_094409958.1|961896_963464_-|transposase	IS3-like element ISSau2 family transposase	transposase	A0A0C5AEA5	Paenibacillus_phage	51.8	1.0e-49
WP_001794171.1|963759_965406_+|transposase	IS1182 family transposase	transposase	A0ZS58	Staphylococcus_virus	98.4	1.7e-289
WP_000448933.1|965432_966422_-|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_000258003.1|966716_967112_+	transcriptional regulator Spx	NA	NA	NA	NA	NA
WP_115283833.1|967482_968202_+	adaptor protein MecA	NA	NA	NA	NA	NA
WP_000959276.1|968322_969309_+	competence protein CoiA	NA	NA	NA	NA	NA
WP_000082722.1|969356_971165_+	oligoendopeptidase F	NA	A0A1X9I5X5	Streptococcus_phage	24.5	9.3e-47
WP_000896691.1|971624_972431_-	DsbA family protein	NA	NA	NA	NA	NA
WP_000214067.1|972453_972819_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000224620.1|972922_973516_-	CYTH domain-containing protein	NA	NA	NA	NA	NA
WP_001242102.1|973701_974049_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001077683.1|974065_974701_+	GTP pyrophosphokinase family protein	NA	NA	NA	NA	NA
WP_001270834.1|974717_975527_+	NAD kinase	NA	NA	NA	NA	NA
WP_000669938.1|975523_976378_+	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_000062404.1|976398_977784_+	magnesium transporter	NA	NA	NA	NA	NA
WP_000395156.1|977793_979638_+	sodium:proton antiporter	NA	NA	NA	NA	NA
WP_000933195.1|979915_980686_+	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_000933105.1|980881_981967_-	AI-2E family transporter	NA	NA	NA	NA	NA
WP_000570704.1|982308_983877_+	alanine:cation symporter family protein	NA	NA	NA	NA	NA
WP_000889176.1|984019_984778_+	esterase family protein	NA	NA	NA	NA	NA
WP_001060545.1|984943_985669_+	hypothetical protein	NA	NA	NA	NA	NA
WP_115283834.1|985670_986522_+	base excision DNA repair protein	NA	NA	NA	NA	NA
WP_000600387.1|987263_987773_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001794241.1|987885_989094_-	MFS transporter	NA	NA	NA	NA	NA
WP_000258649.1|989053_990229_-	diglucosyl diacylglycerol synthase	NA	NA	NA	NA	NA
WP_115283835.1|990660_992145_+	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L- lysine ligase	NA	NA	NA	NA	NA
WP_001794242.1|992125_992386_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001049957.1|992385_993948_+	peptide chain release factor 3	NA	A0A1S5SF82	Streptococcus_phage	28.2	2.2e-36
WP_000928413.1|994249_995053_+	TerC family protein	NA	S5MAL1	Bacillus_phage	40.5	1.6e-30
WP_001794169.1|995271_997596_+|protease	serine protease	protease	W5SAB9	Pithovirus	26.8	4.0e-10
WP_000021872.1|997612_998971_+	TrkH family potassium uptake protein	NA	NA	NA	NA	NA
WP_000414169.1|999109_1000621_+	bifunctional metallophosphatase/5'-nucleotidase	NA	NA	NA	NA	NA
WP_000287265.1|1001109_1001679_-	competence protein ComK	NA	NA	NA	NA	NA
WP_000876825.1|1001888_1002107_+	IDEAL domain-containing protein	NA	NA	NA	NA	NA
WP_000668820.1|1002187_1003174_-	lipoate--protein ligase	NA	NA	NA	NA	NA
WP_000214898.1|1003372_1003549_+	YkvS family protein	NA	NA	NA	NA	NA
WP_001033867.1|1003563_1004166_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_099119695.1|1004466_1004544_+|holin	putative holin-like toxin	holin	NA	NA	NA	NA
>prophage 7
NZ_CP022899	Staphylococcus aureus strain 143 chromosome, complete genome	2813908	1041470	1049943	2813908		Synechococcus_phage(33.33%)	9	NA	NA
WP_000861576.1|1041470_1041953_+	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	44.7	8.0e-22
WP_001010391.1|1041939_1043064_+	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA	NA
WP_000174050.1|1043067_1043772_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	M4R1E8	Synechococcus_phage	41.6	7.3e-48
WP_000848351.1|1043771_1044035_+	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
WP_000666808.1|1044036_1044708_+	phosphoribosylformylglycinamidine synthase I	NA	NA	NA	NA	NA
WP_000032734.1|1044700_1046890_+	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	39.2	5.1e-140
WP_000483716.1|1046868_1048353_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	31.4	8.5e-46
WP_000030814.1|1048345_1049374_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	41.4	7.6e-62
WP_000238673.1|1049376_1049943_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	40.1	3.6e-29
>prophage 8
NZ_CP022899	Staphylococcus aureus strain 143 chromosome, complete genome	2813908	1287915	1330556	2813908	capsid,transposase,tRNA	Staphylococcus_phage(40.0%)	42	NA	NA
WP_001001521.1|1287915_1289460_+|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_000282386.1|1289460_1289826_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000842278.1|1289852_1290344_+	energy coupling factor transporter S component ThiW	NA	NA	NA	NA	NA
WP_000073334.1|1290646_1293265_+	DNA mismatch repair protein MutS	NA	E3T5Q7	Cafeteria_roenbergensis_virus	23.7	3.8e-41
WP_000516249.1|1293277_1295287_+	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	30.2	4.1e-59
WP_001077635.1|1295292_1295835_+	glycerol-3-phosphate responsive antiterminator	NA	NA	NA	NA	NA
WP_001103747.1|1296309_1297128_+	aquaporin family protein	NA	M1H4F4	Acanthocystis_turfacea_Chlorella_virus	35.1	3.1e-26
WP_000417379.1|1297257_1298754_+	glycerol kinase GlpK	NA	NA	NA	NA	NA
WP_001218603.1|1298911_1300585_+	glycerol-3-phosphate dehydrogenase/oxidase	NA	NA	NA	NA	NA
WP_000136948.1|1300734_1301649_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_001574397.1|1301666_1302602_+|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_000561357.1|1302616_1302850_+	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_000448078.1|1303071_1303548_-	glutathione peroxidase	NA	Q70H87	Fowlpox_virus	38.0	1.2e-22
WP_000068622.1|1303659_1304898_+	GTPase HflX	NA	NA	NA	NA	NA
WP_000652040.1|1304916_1306155_+	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_000624945.1|1306398_1306767_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_001126604.1|1306785_1308126_+	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
WP_001659797.1|1308619_1308817_+	hypothetical protein	NA	A0A1W6JNK0	Staphylococcus_phage	48.4	1.7e-10
WP_078367270.1|1309108_1309645_-|transposase	IS30 family transposase	transposase	Q9MBM9	Staphylococcus_prophage	43.6	1.3e-28
WP_000746372.1|1309625_1310129_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_001255381.1|1310237_1310594_-	cystatin-like fold lipoprotein	NA	NA	NA	NA	NA
WP_000810443.1|1310649_1311240_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000247474.1|1311246_1312293_-	CHAP domain-containing protein	NA	A0A1X9I9L1	Staphylococcus_phage	36.9	8.1e-19
WP_000121211.1|1312710_1313658_-|transposase	IS30-like element ISSau1 family transposase	transposase	Q9MBM9	Staphylococcus_prophage	100.0	1.1e-184
WP_001251205.1|1315208_1316567_-	cell division protein FtsK	NA	A0A1S5SFB5	Streptococcus_phage	29.9	4.0e-42
WP_001049264.1|1316620_1319116_-	DUF87 domain-containing protein	NA	NA	NA	NA	NA
WP_000358146.1|1319150_1319534_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000015642.1|1319545_1319806_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000692007.1|1319810_1320866_-	conjugal transfer protein	NA	NA	NA	NA	NA
WP_000388596.1|1320926_1321952_-	replication initiation factor domain-containing protein	NA	NA	NA	NA	NA
WP_000386891.1|1322193_1322496_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000805733.1|1322509_1322830_-	DUF961 family protein	NA	NA	NA	NA	NA
WP_000134547.1|1322980_1323265_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001071312.1|1323950_1324163_+	hypothetical protein	NA	A0A1W6JNK0	Staphylococcus_phage	72.5	3.6e-19
WP_001002343.1|1324459_1324666_+	hypothetical protein	NA	A0A2H4PQT0	Staphylococcus_phage	56.7	1.9e-12
WP_031788482.1|1325367_1325478_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000006110.1|1325870_1326056_+	hypothetical protein	NA	A0A0F6N3H3	Staphylococcus_phage	78.7	2.4e-19
WP_000121211.1|1326267_1327215_-|transposase	IS30-like element ISSau1 family transposase	transposase	Q9MBM9	Staphylococcus_prophage	100.0	1.1e-184
WP_000477487.1|1327641_1328058_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001791412.1|1328488_1328695_-|transposase	transposase	transposase	A0A059NT77	Lactococcus_phage	58.1	4.5e-14
WP_000585095.1|1329578_1329830_+	hypothetical protein	NA	NA	NA	NA	NA
WP_077670290.1|1329890_1330556_+|capsid	minor capsid protein	capsid	A0A1J0MF61	Staphylococcus_phage	53.0	4.6e-60
>prophage 9
NZ_CP022899	Staphylococcus aureus strain 143 chromosome, complete genome	2813908	1611923	1620235	2813908	tRNA	Staphylococcus_phage(16.67%)	7	NA	NA
WP_001213908.1|1611923_1612709_-	metal ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.3	8.0e-19
WP_000924211.1|1612834_1613725_-	deoxyribonuclease IV	NA	A0A2H4UU70	Bodo_saltans_virus	33.1	2.0e-26
WP_001062173.1|1613734_1615081_-	DEAD/DEAH box helicase	NA	A0A1V0SIR5	Klosneuvirus	34.0	1.4e-55
WP_000683921.1|1615194_1616295_-	Nif3-like dinuclear metal center hexameric protein	NA	A0A1S5V250	Saudi_moumouvirus	30.6	3.0e-08
WP_000624581.1|1616297_1616975_-|tRNA	tRNA (adenine-N(1))-methyltransferase	tRNA	NA	NA	NA	NA
WP_001283055.1|1617105_1618212_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	38.1	1.1e-37
WP_001217253.1|1618435_1620235_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	36.0	3.5e-54
>prophage 10
NZ_CP022899	Staphylococcus aureus strain 143 chromosome, complete genome	2813908	1689671	1698714	2813908	tRNA	uncultured_Mediterranean_phage(50.0%)	7	NA	NA
WP_000364542.1|1689671_1690190_-	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	46.5	5.6e-29
WP_000595001.1|1690211_1692485_-	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	29.3	6.2e-64
WP_000749802.1|1692687_1694967_-	protein translocase subunit SecDF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.8	1.8e-31
WP_001160682.1|1695241_1695502_-	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	35.3	8.2e-05
WP_001112045.1|1695520_1696660_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.7	5.4e-85
WP_001019178.1|1696682_1697708_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_001005767.1|1697709_1698714_-	Holliday junction branch migration DNA helicase RuvB	NA	B3GAM6	uncultured_virus	29.1	1.7e-05
>prophage 11
NZ_CP022899	Staphylococcus aureus strain 143 chromosome, complete genome	2813908	1828442	1897349	2813908	protease,tRNA	Staphylococcus_phage(93.02%)	64	NA	NA
WP_001050520.1|1828442_1835012_-	LPXTG-anchored repetitive surface protein SasC	NA	A0A2H4PQU6	Staphylococcus_phage	88.7	1.7e-295
WP_000836472.1|1835335_1835647_-	rhodanese-like domain-containing protein	NA	A0A2H4PQR9	Staphylococcus_phage	96.1	4.5e-50
WP_001108722.1|1835668_1838083_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	98.8	0.0e+00
WP_001025064.1|1838374_1839556_-	MFS transporter	NA	A0A2H4PQR6	Staphylococcus_phage	99.7	9.6e-218
WP_000526541.1|1839666_1840620_+	TIGR01212 family radical SAM protein	NA	A0A2H4PQV5	Staphylococcus_phage	99.3	6.4e-79
WP_000764425.1|1840616_1841180_+	methyltransferase domain-containing protein	NA	A0A2H4PQV0	Staphylococcus_phage	95.7	1.1e-99
WP_000757543.1|1841298_1841700_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000266099.1|1842272_1843100_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_014937042.1|1843102_1843222_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001196351.1|1843333_1844335_+	proline dehydrogenase	NA	A0A2H4PQT6	Staphylococcus_phage	99.1	5.0e-183
WP_001008556.1|1844456_1844921_-	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	97.4	1.9e-68
WP_001159032.1|1844933_1846115_-	3,4-dihydroxy-2-butanone-4-phosphate synthase	NA	A0A2H4PQS2	Staphylococcus_phage	99.7	6.6e-227
WP_000493891.1|1846125_1846758_-	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	99.0	8.4e-112
WP_001819953.1|1846764_1847796_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	98.3	5.8e-195
WP_001261683.1|1848288_1849791_-	FAD-dependent oxidoreductase	NA	A0A2H4PQX2	Staphylococcus_phage	98.6	5.0e-30
WP_000221181.1|1850433_1850748_+	winged helix-turn-helix transcriptional regulator	NA	A0A2H4PQT4	Staphylococcus_phage	97.1	1.7e-52
WP_000989104.1|1850747_1852040_+	arsenite efflux transporter membrane subunit ArsB	NA	A0A2H4PQU3	Staphylococcus_phage	95.1	2.6e-216
WP_001032833.1|1852126_1852981_-	autolysin	NA	Q4ZCC7	Staphylococcus_virus	38.6	9.8e-39
WP_000384171.1|1853256_1853481_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000671059.1|1853679_1854150_+	RNA polymerase sigma factor	NA	A0A2H4PQT5	Staphylococcus_phage	85.8	7.7e-70
WP_001152695.1|1854262_1854706_+	competence protein ComK	NA	NA	NA	NA	NA
WP_001030476.1|1854692_1855136_-	hypothetical protein	NA	A0A2H4PQT8	Staphylococcus_phage	77.4	2.4e-49
WP_001168914.1|1855433_1856069_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_000492901.1|1856235_1856856_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_001096494.1|1857313_1858027_-	transaldolase	NA	M1PR54	Cyanophage	35.3	5.5e-19
WP_000091444.1|1858285_1858588_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001200542.1|1858842_1859208_+	fluoride efflux transporter CrcB	NA	A0A2H4PQR0	Staphylococcus_phage	100.0	3.6e-59
WP_000623481.1|1859204_1859558_+	CrcB family protein	NA	A0A2H4PQQ7	Staphylococcus_phage	97.4	4.2e-20
WP_000453316.1|1859807_1860641_-	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	99.6	1.2e-158
WP_000366165.1|1860852_1861761_-	NERD domain-containing protein	NA	A0A2H4PQQ8	Staphylococcus_phage	99.7	9.8e-138
WP_000933819.1|1861885_1863079_-	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	99.5	4.3e-218
WP_000109909.1|1863450_1865043_+	phosphoenolpyruvate carboxykinase (ATP)	NA	A0A2H4PQN1	Staphylococcus_phage	99.8	0.0e+00
WP_001801476.1|1865335_1866082_-	S9 family peptidase	NA	A0A2H4PQM6	Staphylococcus_phage	97.2	3.3e-139
WP_000672010.1|1866086_1866560_-	nucleoside triphosphatase YtkD	NA	A0A2H4PQM4	Staphylococcus_phage	98.1	9.5e-84
WP_000718107.1|1866625_1866883_+	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	100.0	7.2e-46
WP_000778539.1|1866879_1867881_-	o-succinylbenzoate synthase	NA	A0A2H4PQM0	Staphylococcus_phage	96.7	8.5e-183
WP_000348372.1|1867885_1869364_-	o-succinylbenzoate--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	97.2	2.4e-282
WP_016186903.1|1869522_1869978_-	DUF4909 domain-containing protein	NA	A0A2H4PQN7	Staphylococcus_phage	94.5	3.5e-75
WP_001794016.1|1870279_1870930_+	calcium-binding protein	NA	A0A2H4PQM8	Staphylococcus_phage	88.4	1.0e-51
WP_000070654.1|1871010_1872006_+	DUF4352 domain-containing protein	NA	A0A2H4PQN2	Staphylococcus_phage	97.2	3.8e-74
WP_000669038.1|1872081_1872708_+	hypothetical protein	NA	A0A2H4PQM7	Staphylococcus_phage	84.1	4.5e-81
WP_000627550.1|1872748_1873093_+	DUF3969 family protein	NA	A0A2H4PQN6	Staphylococcus_phage	94.7	5.1e-55
WP_000414222.1|1873190_1873763_+	hypothetical protein	NA	A0A2H4PQN4	Staphylococcus_phage	94.8	3.2e-25
WP_001093574.1|1873911_1875279_-	FRG domain-containing protein	NA	NA	NA	NA	NA
WP_000125075.1|1875278_1875848_-	ImmA/IrrE family metallo-endopeptidase	NA	A0A2H4PQN8	Staphylococcus_phage	54.8	2.2e-39
WP_000747804.1|1876040_1876487_-	DUF1433 domain-containing protein	NA	NA	NA	NA	NA
WP_001801861.1|1876937_1877033_+	type I toxin-antitoxin system Fst family toxin PepA1	NA	NA	NA	NA	NA
WP_001791232.1|1877155_1877257_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001037039.1|1877431_1877875_-	DUF1433 domain-containing protein	NA	NA	NA	NA	NA
WP_000731421.1|1877874_1878318_-	DUF1433 domain-containing protein	NA	NA	NA	NA	NA
WP_000182553.1|1879284_1881705_+	polysaccharide lyase 8 family protein	NA	NA	NA	NA	NA
WP_001819963.1|1881830_1882190_-	DUF1433 domain-containing protein	NA	NA	NA	NA	NA
WP_000619920.1|1882417_1882867_-	DUF1433 domain-containing protein	NA	NA	NA	NA	NA
WP_001053714.1|1882909_1884520_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000095390.1|1884534_1884834_+	secretion protein	NA	NA	NA	NA	NA
WP_000413389.1|1885095_1886913_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000072622.1|1886949_1888104_-	restriction endonuclease subunit S	NA	A0A2H4PQP5	Staphylococcus_phage	36.3	7.8e-39
WP_001794363.1|1888096_1889836_-	type I restriction-modification system subunit M	NA	A0A2H4PQP4	Staphylococcus_phage	98.6	3.2e-286
WP_001038742.1|1890015_1890735_-|protease	serine protease SplF	protease	A0A2H4PQP1	Staphylococcus_phage	98.3	1.0e-129
WP_001038734.1|1890904_1891621_-|protease	serine protease SplE	protease	A0A2H4PQN5	Staphylococcus_phage	97.1	6.6e-129
WP_001038766.1|1892666_1893383_-|protease	serine protease	protease	A0A2H4PQN5	Staphylococcus_phage	62.6	5.5e-83
WP_001039022.1|1893506_1894226_-|protease	serine protease SplC	protease	A0A2H4PQP7	Staphylococcus_phage	93.7	6.4e-124
WP_000595635.1|1895240_1895756_+	membrane protein	NA	NA	NA	NA	NA
WP_000711499.1|1896002_1897349_+	DUF4041 domain-containing protein	NA	M1NRY5	Streptococcus_phage	51.1	2.5e-65
>prophage 12
NZ_CP022899	Staphylococcus aureus strain 143 chromosome, complete genome	2813908	1932322	2000867	2813908	portal,tRNA,integrase,capsid,protease,terminase,holin,tail,head	Staphylococcus_phage(83.33%)	81	1969707:1969721	2002424:2002438
WP_000181394.1|1932322_1932793_-|tRNA	tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL	tRNA	NA	NA	NA	NA
WP_001793998.1|1932797_1933940_-|tRNA	tRNA epoxyqueuosine(34) reductase QueG	tRNA	NA	NA	NA	NA
WP_001144055.1|1934075_1934804_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	42.7	1.0e-36
WP_000649898.1|1934790_1936248_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_000063551.1|1936506_1937568_-	PTS transporter subunit IIC	NA	NA	NA	NA	NA
WP_000110011.1|1946397_1946844_-	peroxide-responsive transcriptional repressor PerR	NA	NA	NA	NA	NA
WP_115283866.1|1946940_1947891_-	hydroxyacid dehydrogenase	NA	NA	NA	NA	NA
WP_000939530.1|1947896_1948352_-	peroxiredoxin	NA	NA	NA	NA	NA
WP_001011603.1|1948432_1949722_+	glutamate-1-semialdehyde 2,1-aminomutase	NA	NA	NA	NA	NA
WP_001236371.1|1950014_1951109_+	aromatic acid exporter family protein	NA	NA	NA	NA	NA
WP_000597238.1|1951299_1953036_-	SAV1866 family putative multidrug efflux ABC transporter	NA	W8CYL7	Bacillus_phage	30.4	1.7e-53
WP_000251252.1|1953326_1953869_-	DUF402 domain-containing protein	NA	NA	NA	NA	NA
WP_000284755.1|1954171_1955209_-	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
WP_000379091.1|1955360_1956338_+	metal-dependent hydrolase	NA	NA	NA	NA	NA
WP_000886472.1|1956598_1957435_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000535849.1|1957443_1958961_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_001294033.1|1958975_1959266_-	YfhH family protein	NA	NA	NA	NA	NA
WP_001124422.1|1959267_1960086_-	recombination regulator RecX	NA	NA	NA	NA	NA
WP_000830380.1|1960346_1961156_-	monofunctional peptidoglycan glycosyltransferase SgtB	NA	NA	NA	NA	NA
WP_000163281.1|1961496_1962012_-	type 1 glutamine amidotransferase	NA	NA	NA	NA	NA
WP_001005407.1|1962141_1962303_-	hypothetical protein	NA	NA	NA	NA	NA
WP_100250272.1|1962649_1962730_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000278830.1|1962799_1963537_-	hypothetical protein	NA	A7YGY5	Staphylococcus_virus	99.6	7.5e-136
WP_000238963.1|1963543_1964338_-	phosphatidylinositol kinase	NA	Q4ZAU0	Staphylococcus_virus	100.0	8.3e-149
WP_000861038.1|1964828_1965584_-	CHAP domain-containing protein	NA	D2JLG5	Staphylococcus_phage	100.0	3.4e-152
WP_000611512.1|1965595_1965850_-|holin	phage holin	holin	D2JLG4	Staphylococcus_phage	100.0	4.1e-41
WP_001791821.1|1965901_1966009_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011447039.1|1966061_1966238_-|holin	putative holin-like toxin	holin	D2JLG3	Staphylococcus_phage	98.3	2.2e-22
WP_000539688.1|1966387_1966684_-	DUF2951 domain-containing protein	NA	D2JLG2	Staphylococcus_phage	100.0	2.9e-46
WP_001040261.1|1966741_1967029_-	hypothetical protein	NA	D2JLG1	Staphylococcus_phage	100.0	1.3e-43
WP_001153681.1|1967075_1967228_-	hypothetical protein	NA	D2JLG0	Staphylococcus_phage	100.0	5.2e-20
WP_115283867.1|1967217_1971003_-	hypothetical protein	NA	A0EX05	Staphylococcus_phage	99.8	0.0e+00
1969707:1969721	attL	ATTTTTCAACATCAT	NA	NA	NA	NA
WP_000567413.1|1971018_1972503_-|tail	phage tail protein	tail	A0EX04	Staphylococcus_phage	100.0	4.5e-297
WP_115283868.1|1972499_1977029_-|tail	phage tail tape measure protein	tail	A0EX03	Staphylococcus_phage	99.1	0.0e+00
WP_001096355.1|1977273_1977624_-	hypothetical protein	NA	G4KNQ8	Staphylococcus_phage	100.0	7.8e-59
WP_071621395.1|1977673_1977898_-	hypothetical protein	NA	A0A075LYE8	Staphylococcus_phage	100.0	3.0e-32
WP_000268736.1|1977939_1978584_-|tail	phage tail protein	tail	Q6R871	Staphylococcus_virus	100.0	6.5e-120
WP_000565498.1|1978584_1978992_-	hypothetical protein	NA	G4KNQ6	Staphylococcus_phage	100.0	7.1e-72
WP_000114341.1|1978988_1979393_-	hypothetical protein	NA	A0A1W6JPJ1	Staphylococcus_phage	100.0	2.5e-69
WP_000755150.1|1979389_1979752_-|head,tail	head-tail adaptor protein	head,tail	G4KNQ4	Staphylococcus_phage	100.0	4.4e-65
WP_000150936.1|1979735_1980020_-|head,tail	phage head-tail adapter protein	head,tail	A0A2I6PDJ5	Staphylococcus_phage	100.0	2.3e-45
WP_000238236.1|1980009_1980294_-	hypothetical protein	NA	A0A2I6PDJ3	Staphylococcus_phage	100.0	1.8e-45
WP_031897300.1|1980313_1981459_-|capsid	phage major capsid protein	capsid	A0A1W6JPL4	Staphylococcus_phage	99.5	3.6e-214
WP_000861912.1|1981481_1982219_-|protease	Clp protease ClpP	protease	A0A1W6JPK0	Staphylococcus_phage	99.2	5.2e-129
WP_000025266.1|1982202_1983390_-|portal	phage portal protein	portal	A0A2I6PDI1	Staphylococcus_phage	99.7	3.0e-219
WP_000625096.1|1983405_1985067_-|terminase	terminase large subunit	terminase	A0A075M4D3	Staphylococcus_phage	100.0	0.0e+00
WP_000402904.1|1985063_1985408_-	hypothetical protein	NA	G4KNP9	Staphylococcus_phage	100.0	9.4e-57
WP_000988330.1|1985537_1985837_-	HNH endonuclease	NA	G4KNP8	Staphylococcus_phage	100.0	4.6e-52
WP_000590122.1|1986068_1986485_-	hypothetical protein	NA	G4KNP7	Staphylococcus_phage	100.0	1.3e-76
WP_000265041.1|1986512_1986713_-	DUF1514 family protein	NA	R9QT57	Staphylococcus_phage	100.0	1.1e-28
WP_001005262.1|1986712_1987363_-	hypothetical protein	NA	D2JLD8	Staphylococcus_phage	100.0	8.9e-117
WP_000595234.1|1987521_1987671_-	transcriptional activator RinB	NA	A0A1W6JPZ2	Staphylococcus_phage	98.0	6.3e-18
WP_000483477.1|1987663_1987900_-	hypothetical protein	NA	A7TWB3	Staphylococcus_phage	100.0	1.9e-37
WP_000195831.1|1987924_1988161_-	DUF1381 domain-containing protein	NA	C8CH06	Staphylococcus_phage	100.0	1.1e-35
WP_000185638.1|1988197_1988725_-	dUTP pyrophosphatase	NA	A7TWB1	Staphylococcus_phage	100.0	7.8e-95
WP_031905179.1|1988717_1988966_-	DUF1024 family protein	NA	A0A2I6PDI5	Staphylococcus_phage	98.8	1.2e-37
WP_015980409.1|1989006_1989255_-	hypothetical protein	NA	S4V683	Staphylococcus_phage	100.0	3.2e-43
WP_115283869.1|1989255_1989615_-	hypothetical protein	NA	B2ZYW3	Staphylococcus_phage	98.3	1.9e-60
WP_115283870.1|1989615_1989801_-	DUF3113 family protein	NA	A0A0H4IPE3	Staphylococcus_phage	95.1	7.8e-26
WP_000049814.1|1989805_1990210_-	DUF1064 domain-containing protein	NA	Q6R835	Staphylococcus_virus	99.3	7.1e-72
WP_001123688.1|1990219_1990441_-	DUF3269 family protein	NA	Q9G021	Staphylococcus_phage	100.0	1.3e-35
WP_000803056.1|1990608_1991388_-	ATP-binding protein	NA	Q9G022	Staphylococcus_virus	100.0	2.4e-145
WP_000190252.1|1991398_1992169_-	hypothetical protein	NA	A0A1X9H0A8	Staphylococcus_phage	98.8	1.2e-120
WP_000414755.1|1992234_1992516_+	hypothetical protein	NA	A0A1W6JPU7	Staphylococcus_phage	100.0	2.6e-49
WP_001199431.1|1992654_1993326_-	hypothetical protein	NA	Q9G025	Staphylococcus_virus	98.7	3.4e-127
WP_000704705.1|1993338_1993890_-	single-stranded DNA-binding protein	NA	Q4ZBM4	Staphylococcus_phage	100.0	3.4e-101
WP_000134097.1|1993918_1994707_-	ATP-binding protein	NA	Q4ZBM5	Staphylococcus_phage	100.0	2.6e-142
WP_000815402.1|1994699_1994921_-	DUF2483 family protein	NA	B2ZYV2	Staphylococcus_phage	100.0	3.2e-34
WP_000291089.1|1994930_1995191_-	DUF1108 family protein	NA	Q4ZBM7	Staphylococcus_phage	100.0	1.2e-43
WP_000066011.1|1995286_1995448_-	DUF1270 domain-containing protein	NA	Q4ZAZ7	Staphylococcus_virus	100.0	2.5e-20
WP_000594789.1|1995440_1995662_-	hypothetical protein	NA	B2ZYU8	Staphylococcus_phage	100.0	8.7e-32
WP_000395455.1|1995732_1995963_+	hypothetical protein	NA	C8CGY3	Staphylococcus_phage	100.0	2.3e-35
WP_001148585.1|1996138_1996879_-	antirepressor	NA	A0A0N7E0R7	Staphylococcus_phage	100.0	6.3e-135
WP_000394410.1|1996938_1997421_+	hypothetical protein	NA	A0A0N9BAX2	Staphylococcus_phage	100.0	1.1e-82
WP_000438352.1|1997521_1997701_-	hypothetical protein	NA	A0A0N9BAV3	Staphylococcus_phage	100.0	1.7e-25
WP_001121116.1|1997714_1997951_-	helix-turn-helix transcriptional regulator	NA	A0A0N9BAY2	Staphylococcus_phage	100.0	1.5e-37
WP_000333630.1|1998102_1998417_+	helix-turn-helix transcriptional regulator	NA	A0A0N9BAW4	Staphylococcus_phage	100.0	9.8e-53
WP_000525012.1|1998429_1998891_+	hypothetical protein	NA	Q4ZBN7	Staphylococcus_phage	99.3	4.6e-83
WP_001077638.1|1998911_1999403_+	hypothetical protein	NA	Q4ZBN8	Staphylococcus_phage	100.0	7.5e-84
WP_000337827.1|1999528_1999708_-	hypothetical protein	NA	Q4ZBP0	Staphylococcus_phage	100.0	3.7e-25
WP_001145721.1|1999820_2000867_+|integrase	site-specific integrase	integrase	Q4ZE08	Staphylococcus_virus	100.0	4.2e-201
2002424:2002438	attR	ATTTTTCAACATCAT	NA	NA	NA	NA
>prophage 13
NZ_CP022899	Staphylococcus aureus strain 143 chromosome, complete genome	2813908	2078051	2092385	2813908	terminase,coat,integrase	Staphylococcus_phage(68.42%)	22	2075683:2075702	2090407:2090426
2075683:2075702	attL	TTTTACATCATTCCTGGCAT	NA	NA	NA	NA
WP_000812237.1|2078051_2078279_-	hypothetical protein	NA	A0A2H4JAH5	uncultured_Caudovirales_phage	47.4	1.9e-13
WP_001035597.1|2078697_2079402_+	toxic shock syndrome toxin TSST-1	NA	NA	NA	NA	NA
WP_001293073.1|2079556_2080126_-|terminase	terminase small subunit	terminase	Q4ZE85	Staphylococcus_phage	98.4	3.5e-101
WP_000358778.1|2080122_2080464_-	hypothetical protein	NA	A0A1W6JQM3	Staphylococcus_phage	100.0	1.7e-58
WP_000771368.1|2080466_2080994_-|coat	spore coat protein	coat	A0A1W6JQH7	Staphylococcus_phage	97.1	3.5e-87
WP_000448775.1|2081044_2081263_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000846285.1|2081280_2081859_-	hypothetical protein	NA	A0A2H4JBG0	uncultured_Caudovirales_phage	38.4	1.4e-28
WP_001190608.1|2081870_2082212_-	hypothetical protein	NA	Q4ZE66	Staphylococcus_phage	98.2	7.1e-57
WP_115283873.1|2082755_2083379_-	pathogenicity island protein	NA	Q4ZE67	Staphylococcus_phage	94.7	5.0e-109
WP_000356937.1|2083375_2083756_-	hypothetical protein	NA	Q4ZE71	Staphylococcus_phage	100.0	6.9e-69
WP_115283874.1|2084067_2085777_-	DUF927 domain-containing protein	NA	Q4ZE73	Staphylococcus_phage	99.8	0.0e+00
WP_001002721.1|2085790_2086660_-	hypothetical protein	NA	Q4ZE74	Staphylococcus_phage	99.3	6.0e-169
WP_001103930.1|2086723_2087041_-	DUF1474 family protein	NA	A0A1W6JQH0	Staphylococcus_phage	58.2	1.6e-18
WP_000403839.1|2087041_2087425_-	hypothetical protein	NA	A0A1W6JQI7	Staphylococcus_phage	96.1	9.7e-63
WP_001231378.1|2087426_2087630_-	hypothetical protein	NA	A0A1W6JQF4	Staphylococcus_phage	97.0	7.5e-30
WP_000708433.1|2087614_2087770_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000481967.1|2087766_2088084_-	helix-turn-helix domain-containing protein	NA	A0A1W6JQE0	Staphylococcus_phage	98.1	9.2e-51
WP_000153640.1|2088088_2088307_-	helix-turn-helix transcriptional regulator	NA	A0A2H4JB11	uncultured_Caudovirales_phage	66.7	1.3e-19
WP_000620857.1|2088479_2089154_+	helix-turn-helix transcriptional regulator	NA	A0A2H4JGT9	uncultured_Caudovirales_phage	45.8	1.6e-39
WP_000179345.1|2089167_2090340_+|integrase	site-specific integrase	integrase	A0A1W6JQD3	Staphylococcus_phage	98.2	3.5e-220
WP_000240651.1|2090408_2092025_-	chaperonin GroEL	NA	A0A240F779	uncultured_virus	54.7	2.6e-157
2090407:2090426	attR	TTTTACATCATTCCTGGCAT	NA	NA	NA	NA
WP_000917289.1|2092100_2092385_-	co-chaperone GroES	NA	A0A221S386	uncultured_virus	46.2	4.7e-14
