assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_003354605.1_ASM335460v1	NZ_CP022898	Staphylococcus aureus strain 422 chromosome, complete genome	1	481005-481094	1	CRISPRCasFinder	no	cas3	cas3,DEDDh,DinG,csa3,WYL	Unclear	AGTTGGGGTGTGGGCCCCAACACAGAAGCTG	31	1	4	481036-481063|481036-481063|481036-481063|481036-481063	NZ_CP022898.1_596446-596473|NZ_CP022898.1_768307-768280|NZ_CP022898.1_1977546-1977519|NZ_CP022898.1_1217265-1217292	NA	1	1	Unclear	cas3,DEDDh,DinG,csa3,WYL	NA,NA|31aa|down_5|NZ_CP022898.1_485648_485741_+	NA|191aa|up_9|NZ_CP022898.1_468448_469021_+	COG0193, Pth, Peptidyl-tRNA hydrolase [Translation, ribosomal structure and biogenesis]	cas3|1169aa|up_8|NZ_CP022898.1_469020_472527_+	COG1197, Mfd, Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]	NA|509aa|up_7|NZ_CP022898.1_472516_474043_+	cd13124, MATE_SpoVB_like, Stage V sporulation protein B, also known as Stage III sporulation protein F, and related proteins	NA|398aa|up_6|NZ_CP022898.1_474042_475236_+	COG3956, COG3956, Protein containing tetrapyrrole methyltransferase domain and MazG-like (predicted pyrophosphatase) domain [General function prediction only]	NA|88aa|up_5|NZ_CP022898.1_475232_475496_+	COG1188, COG1188, Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) [Translation, ribosomal structure and biogenesis]	NA|131aa|up_4|NZ_CP022898.1_475513_475906_+	COG2919, COG2919, Septum formation initiator [Cell division and chromosome partitioning]	NA|134aa|up_3|NZ_CP022898.1_476010_476412_+	PRK08582, PRK08582, RNA-binding protein S1	NA|432aa|up_2|NZ_CP022898.1_476591_477887_+	pfam01171, ATP_bind_3, PP-loop family	NA|180aa|up_1|NZ_CP022898.1_477891_478431_+	COG0634, Hpt, Hypoxanthine-guanine phosphoribosyltransferase [Nucleotide transport and metabolism]	NA|698aa|up_0|NZ_CP022898.1_478688_480782_+	TIGR01241, ATP-dependent_zinc_metalloprotease_FtsH, ATP-dependent metalloprotease FtsH	NA|294aa|down_0|NZ_CP022898.1_481427_482309_+	PRK00114, hslO, Hsp33 family molecular chaperone HslO	NA|311aa|down_1|NZ_CP022898.1_482487_483420_+	TIGR01139, Cysteine_synthase, cysteine synthase A	NA|268aa|down_2|NZ_CP022898.1_483635_484439_+	cd00739, DHPS, DHPS subgroup of Pterin binding enzymes	NA|122aa|down_3|NZ_CP022898.1_484416_484782_+	cd00534, DHNA_DHNTPE, Dihydroneopterin aldolase (DHNA) and 7,8-dihydroneopterin triphosphate epimerase domain (DHNTPE); these enzymes have been designated folB and folX, respectively	NA|159aa|down_4|NZ_CP022898.1_484778_485255_+	COG0801, FolK, 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase [Coenzyme metabolism]	NA|31aa|down_5|NZ_CP022898.1_485648_485741_+	NA	NA|496aa|down_6|NZ_CP022898.1_485793_487281_+	PRK00484, lysS, lysyl-tRNA synthetase; Reviewed	NA|461aa|down_7|NZ_CP022898.1_499830_501213_-	COG1167, ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]	NA|296aa|down_8|NZ_CP022898.1_501316_502204_+	PRK04180, PRK04180, pyridoxal 5'-phosphate synthase lyase subunit PdxS	NA|187aa|down_9|NZ_CP022898.1_502207_502768_+	PRK13525, PRK13525, pyridoxal 5'-phosphate synthase glutaminase subunit PdxT
GCF_003354605.1_ASM335460v1	NZ_CP022898	Staphylococcus aureus strain 422 chromosome, complete genome	2	1041937-1042033	2	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	GCATAAAAGCCCCTAACAACTAAAAGTTGTAAGG	34	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA,NA|45aa|down_0|NZ_CP022898.1_1042042_1042177_-,NA|432aa|down_1|NZ_CP022898.1_1042328_1043624_+	NA|88aa|up_9|NZ_CP022898.1_1029468_1029732_+	COG1828, PurS, Phosphoribosylformylglycinamidine (FGAM) synthase, PurS component [Nucleotide transport and metabolism]	NA|224aa|up_8|NZ_CP022898.1_1029733_1030405_+	PRK03619, PRK03619, phosphoribosylformylglycinamidine synthase subunit PurQ	NA|730aa|up_7|NZ_CP022898.1_1030397_1032587_+	PRK01213, PRK01213, phosphoribosylformylglycinamidine synthase subunit PurL	NA|343aa|up_6|NZ_CP022898.1_1034043_1035072_+	PRK05385, PRK05385, phosphoribosylaminoimidazole synthetase; Provisional	NA|189aa|up_5|NZ_CP022898.1_1035074_1035641_+	COG0299, PurN, Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]	NA|493aa|up_4|NZ_CP022898.1_1035655_1037134_+	PRK00881, purH, bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional	NA|416aa|up_3|NZ_CP022898.1_1037155_1038403_+	PRK13790, PRK13790, phosphoribosylamine--glycine ligase; Provisional	NA|269aa|up_2|NZ_CP022898.1_1038668_1039475_-	COG0619, CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters [Inorganic ion transport and metabolism]	NA|467aa|up_1|NZ_CP022898.1_1039467_1040868_-	cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system	NA|192aa|up_0|NZ_CP022898.1_1040883_1041459_-	COG4721, COG4721, ABC-type cobalt transport system, predicted permease component [Inorganic ion transport and metabolism]	NA|45aa|down_0|NZ_CP022898.1_1042042_1042177_-	NA	NA|432aa|down_1|NZ_CP022898.1_1042328_1043624_+	NA	NA|402aa|down_2|NZ_CP022898.1_1044048_1045254_+	COG1092, COG1092, Predicted SAM-dependent methyltransferases [General function prediction only]	NA|181aa|down_3|NZ_CP022898.1_1045307_1045850_+	pfam05128, DUF697, Domain of unknown function (DUF697)	NA|89aa|down_4|NZ_CP022898.1_1046003_1046270_+	PRK13780, PRK13780, phosphocarrier protein HPr; Provisional	NA|573aa|down_5|NZ_CP022898.1_1046272_1047991_+	COG1080, PtsA, Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) [Carbohydrate transport and metabolism]	NA|523aa|down_6|NZ_CP022898.1_1048073_1049641_+	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|78aa|down_7|NZ_CP022898.1_1049890_1050124_-	cd02976, NrdH, NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile	NA|454aa|down_8|NZ_CP022898.1_1050321_1051683_+	pfam01654, Cyt_bd_oxida_I, Cytochrome bd terminal oxidase subunit I	NA|340aa|down_9|NZ_CP022898.1_1051679_1052699_+	COG1294, AppB, Cytochrome bd-type quinol oxidase, subunit 2 [Energy production and conversion]
GCF_003354605.1_ASM335460v1	NZ_CP022898	Staphylococcus aureus strain 422 chromosome, complete genome	3	1768189-1768271	3	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	TGCAAGTTGGGGTGGGGCCCCAACA	25	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA,NA	NA|423aa|up_9|NZ_CP022898.1_1752562_1753831_-	PRK07006, PRK07006, isocitrate dehydrogenase; Reviewed	NA|374aa|up_8|NZ_CP022898.1_1753879_1755001_-	PRK14035, PRK14035, citrate synthase; Provisional	NA|454aa|up_7|NZ_CP022898.1_1755348_1756710_+	COG1113, AnsP, Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]	NA|586aa|up_6|NZ_CP022898.1_1757059_1758817_-	PRK06354, PRK06354, pyruvate kinase; Provisional	NA|323aa|up_5|NZ_CP022898.1_1758838_1759807_-	PRK03202, PRK03202, ATP-dependent 6-phosphofructokinase	NA|315aa|up_4|NZ_CP022898.1_1760075_1761020_-	PRK05724, PRK05724, acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated	NA|286aa|up_3|NZ_CP022898.1_1761019_1761877_-	PRK05654, PRK05654, acetyl-CoA carboxylase carboxyltransferase subunit beta	NA|410aa|up_2|NZ_CP022898.1_1762071_1763301_-	PRK07232, PRK07232, bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed	NA|1066aa|up_1|NZ_CP022898.1_1763752_1766950_-	COG0587, DnaE, DNA polymerase III, alpha subunit [DNA replication, recombination, and repair]	NA|314aa|up_0|NZ_CP022898.1_1766970_1767912_-	COG0618, COG0618, Exopolyphosphatase-related proteins [General function prediction only]	NA|433aa|down_0|NZ_CP022898.1_1768314_1769613_-	COG4109, COG4109, Predicted transcriptional regulator containing CBS domains [Transcription]	NA|138aa|down_1|NZ_CP022898.1_1769817_1770231_+	pfam00582, Usp, Universal stress protein family	NA|230aa|down_2|NZ_CP022898.1_1770618_1771308_-	PRK00685, PRK00685, metal-dependent hydrolase; Provisional	NA|352aa|down_3|NZ_CP022898.1_1771482_1772538_+	COG0006, PepP, Xaa-Pro aminopeptidase [Amino acid transport and metabolism]	NA|373aa|down_4|NZ_CP022898.1_1772852_1773971_-	cd05305, L-AlaDH, Alanine dehydrogenase NAD-binding and catalytic domains	NA|167aa|down_5|NZ_CP022898.1_1774111_1774612_+	pfam00582, Usp, Universal stress protein family	NA|401aa|down_6|NZ_CP022898.1_1774857_1776060_-	PRK00180, PRK00180, acetate kinase A/propionate kinase 2; Reviewed	NA|316aa|down_7|NZ_CP022898.1_1776147_1777095_-	COG0827, COG0827, Adenine-specific DNA methylase [DNA replication, recombination, and repair]	NA|165aa|down_8|NZ_CP022898.1_1777217_1777712_-	PRK00522, tpx, thiol peroxidase	NA|257aa|down_9|NZ_CP022898.1_1777809_1778580_-	PRK10621, PRK10621, hypothetical protein; Provisional
GCF_003354605.1_ASM335460v1	NZ_CP022898	Staphylococcus aureus strain 422 chromosome, complete genome	4	2083794-2083873	4	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	GGCCCCACCCCAACTTACATTGT	23	1	8	2083817-2083850|2083817-2083850|2083817-2083850|2083817-2083850|2083817-2083850|2083817-2083850|2083817-2083850|2083817-2083850	NZ_CP022898.1_768403-768436|NZ_CP022898.1_812720-812753|NZ_CP022898.1_329481-329448|NZ_CP022898.1_329536-329503|NZ_CP022898.1_722343-722310|NZ_CP022898.1_1125858-1125825|NZ_CP022898.1_816920-816887|NZ_CP022898.1_1382853-1382886	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|61aa|up_8|NZ_CP022898.1_2073541_2073724_+,NA|49aa|up_7|NZ_CP022898.1_2073759_2073906_+,NA|205aa|up_6|NZ_CP022898.1_2073902_2074517_-,NA|209aa|down_1|NZ_CP022898.1_2085892_2086519_-,NA|60aa|down_2|NZ_CP022898.1_2086515_2086695_-	NA|257aa|up_9|NZ_CP022898.1_2072571_2073342_+	COG2932, COG2932, Predicted transcriptional regulator [Transcription]	NA|61aa|up_8|NZ_CP022898.1_2073541_2073724_+	NA	NA|49aa|up_7|NZ_CP022898.1_2073759_2073906_+	NA	NA|205aa|up_6|NZ_CP022898.1_2073902_2074517_-	NA	NA|346aa|up_5|NZ_CP022898.1_2074624_2075662_+	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|339aa|up_4|NZ_CP022898.1_2077057_2078074_-	pfam07968, Leukocidin, Leukocidin/Hemolysin toxin family	NA|352aa|up_3|NZ_CP022898.1_2078095_2079151_-	pfam07968, Leukocidin, Leukocidin/Hemolysin toxin family	NA|408aa|up_2|NZ_CP022898.1_2079586_2080810_+	PRK08588, PRK08588, succinyl-diaminopimelate desuccinylase; Reviewed	NA|290aa|up_1|NZ_CP022898.1_2081307_2082177_-	TIGR00950, Uncharacterized_inner_membrane_transporter_YicL, Carboxylate/Amino Acid/Amine Transporter	NA|401aa|up_0|NZ_CP022898.1_2082179_2083382_-	PRK09064, PRK09064, 5-aminolevulinate synthase; Validated	NA|436aa|down_0|NZ_CP022898.1_2084013_2085321_+	TIGR00933, Trk_system_potassium_uptake_protein_trkH	NA|209aa|down_1|NZ_CP022898.1_2085892_2086519_-	NA	NA|60aa|down_2|NZ_CP022898.1_2086515_2086695_-	NA	NA|539aa|down_3|NZ_CP022898.1_2087238_2088855_-	PRK00013, groEL, chaperonin GroEL; Reviewed	NA|95aa|down_4|NZ_CP022898.1_2088930_2089215_-	PRK00364, groES, co-chaperonin GroES; Reviewed	NA|248aa|down_5|NZ_CP022898.1_2089389_2090133_+	pfam02517, Abi, CAAX protease self-immunity	NA|383aa|down_6|NZ_CP022898.1_2090157_2091306_-	TIGR04526, predic_Ig_block, putative immunoglobulin-blocking virulence protein	NA|209aa|down_7|NZ_CP022898.1_2091502_2092129_+	COG3560, FMR2, Predicted oxidoreductase related to nitroreductase [General function prediction only]	NA|262aa|down_8|NZ_CP022898.1_2092480_2093266_+	cd07583, nitrilase_5, Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases)	NA|27aa|down_9|NZ_CP022898.1_2093862_2093943_-	PRK14752, PRK14752, delta-lysin family phenol-soluble modulin
GCF_003354605.1_ASM335460v1	NZ_CP022898	Staphylococcus aureus strain 422 chromosome, complete genome	5	2213944-2214029	5	CRISPRCasFinder	no	csa3	cas3,DEDDh,DinG,csa3,WYL	Type I-A	CAACTTTAGTTGTTAGGGGCTCTTATGCA	29	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|77aa|up_5|NZ_CP022898.1_2208816_2209047_-,NA|364aa|up_0|NZ_CP022898.1_2212835_2213927_+,NA|35aa|down_0|NZ_CP022898.1_2214432_2214537_-	NA|237aa|up_9|NZ_CP022898.1_2204427_2205138_+	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase	NA|148aa|up_8|NZ_CP022898.1_2205258_2205702_-	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism]	NA|138aa|up_7|NZ_CP022898.1_2205901_2206315_-	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function    prediction only]	NA|458aa|up_6|NZ_CP022898.1_2206772_2208146_-	pfam01878, EVE, EVE domain	NA|77aa|up_5|NZ_CP022898.1_2208816_2209047_-	NA	NA|313aa|up_4|NZ_CP022898.1_2209077_2210016_-	COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism]	NA|222aa|up_3|NZ_CP022898.1_2210450_2211116_-	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5	csa3|107aa|up_2|NZ_CP022898.1_2211267_2211588_+	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|327aa|up_1|NZ_CP022898.1_2211589_2212570_+	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	NA|364aa|up_0|NZ_CP022898.1_2212835_2213927_+	NA	NA|35aa|down_0|NZ_CP022898.1_2214432_2214537_-	NA	NA|376aa|down_1|NZ_CP022898.1_2215244_2216372_-	pfam02037, SAP, SAP domain	NA|286aa|down_2|NZ_CP022898.1_2217420_2218278_-	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|261aa|down_3|NZ_CP022898.1_2218345_2219128_-	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|602aa|down_4|NZ_CP022898.1_2219359_2221165_-	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|513aa|down_5|NZ_CP022898.1_2221845_2223384_+	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]	NA|711aa|down_6|NZ_CP022898.1_2223418_2225551_+	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|145aa|down_7|NZ_CP022898.1_2225562_2225997_+	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]	NA|369aa|down_8|NZ_CP022898.1_2225996_2227103_+	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional	NA|2478aa|down_9|NZ_CP022898.1_2227421_2234855_-	TIGR04263, cell_wall_surface_anchor_family_protein, SasC/Mrp/FmtB intercellular aggregation domain
GCF_003354605.1_ASM335460v1	NZ_CP022898	Staphylococcus aureus strain 422 chromosome, complete genome	6	2331311-2331399	6	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	GTTCCCCAACTTGCACATTATTGTATGCTG	30	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|55aa|up_9|NZ_CP022898.1_2321891_2322056_+,NA|106aa|up_8|NZ_CP022898.1_2322290_2322608_+,NA|84aa|up_5|NZ_CP022898.1_2327732_2327984_+,NA|57aa|up_0|NZ_CP022898.1_2331125_2331296_+,NA	NA|55aa|up_9|NZ_CP022898.1_2321891_2322056_+	NA	NA|106aa|up_8|NZ_CP022898.1_2322290_2322608_+	NA	NA|1056aa|up_7|NZ_CP022898.1_2322794_2325962_-	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms]	NA|422aa|up_6|NZ_CP022898.1_2326078_2327344_-	COG2348, COG2348, Peptidoglycan interpeptide bridge formation enzyme [Cell wall/membrane/envelope biogenesis]	NA|84aa|up_5|NZ_CP022898.1_2327732_2327984_+	NA	NA|255aa|up_4|NZ_CP022898.1_2327975_2328740_-	pfam13468, Glyoxalase_3, Glyoxalase-like domain	NA|147aa|up_3|NZ_CP022898.1_2328903_2329344_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|404aa|up_2|NZ_CP022898.1_2329336_2330548_+	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily	NA|117aa|up_1|NZ_CP022898.1_2330649_2331000_-	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|57aa|up_0|NZ_CP022898.1_2331125_2331296_+	NA	NA|341aa|down_0|NZ_CP022898.1_2331581_2332604_-	TIGR02666, Cyclic_pyranopterin_monophosphate_synthase, molybdenum cofactor biosynthesis protein A, bacterial	NA|200aa|down_1|NZ_CP022898.1_2332623_2333223_-	PRK00317, mobA, molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed	NA|78aa|down_2|NZ_CP022898.1_2333229_2333463_-	cd00754, Ubl_MoaD, ubiquitin-like (Ubl) domain found in molybdenum cofactor biosynthesis protein D (MoaD) and similar proteins	NA|149aa|down_3|NZ_CP022898.1_2333468_2333915_-	COG0314, MoaE, Molybdopterin converting factor, large subunit [Coenzyme metabolism]	NA|162aa|down_4|NZ_CP022898.1_2333928_2334414_-	COG1763, MobB, Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]	NA|420aa|down_5|NZ_CP022898.1_2334410_2335670_-	cd00887, MoeA, MoeA family	NA|165aa|down_6|NZ_CP022898.1_2335732_2336227_+	PRK09364, moaC, cyclic pyranopterin monophosphate synthase MoaC	NA|169aa|down_7|NZ_CP022898.1_2336228_2336735_-	COG0521, MoaB, Molybdopterin biosynthesis enzymes [Coenzyme metabolism]	NA|335aa|down_8|NZ_CP022898.1_2336765_2337770_-	PRK07688, PRK07688, thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated	NA|202aa|down_9|NZ_CP022898.1_2337938_2338544_-	COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
GCF_003354605.1_ASM335460v1	NZ_CP022898	Staphylococcus aureus strain 422 chromosome, complete genome	7	2394077-2394170	7	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	TAACTTAAGTTATTAGAGCCTCTTATGCAGTTGC	34	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|177aa|up_9|NZ_CP022898.1_2381121_2381652_+,NA|191aa|up_4|NZ_CP022898.1_2386684_2387257_-,NA|62aa|down_6|NZ_CP022898.1_2400652_2400838_-	NA|177aa|up_9|NZ_CP022898.1_2381121_2381652_+	NA	NA|535aa|up_8|NZ_CP022898.1_2381717_2383322_-	TIGR02005, PTS-IIBC-alpha, PTS system, alpha-glucoside-specific IIBC component	NA|255aa|up_7|NZ_CP022898.1_2383651_2384416_+	COG1737, RpiR, Transcriptional regulators [Transcription]	NA|169aa|up_6|NZ_CP022898.1_2384473_2384980_-	COG3832, COG3832, Uncharacterized conserved protein [Function unknown]	NA|438aa|up_5|NZ_CP022898.1_2385146_2386460_-	COG1757, NhaC, Na+/H+ antiporter [Energy production and conversion]	NA|191aa|up_4|NZ_CP022898.1_2386684_2387257_-	NA	NA|294aa|up_3|NZ_CP022898.1_2387743_2388625_-	PRK07985, PRK07985, SDR family oxidoreductase	NA|374aa|up_2|NZ_CP022898.1_2388735_2389857_-	cd05669, M20_Acy1_YxeP-like, M20 Peptidase aminoacyclase-1 YxeP-like proteins, including YxeP, YtnL, YjiB and HipO2	NA|413aa|up_1|NZ_CP022898.1_2390134_2391373_-	PRK09356, PRK09356, imidazolonepropionase; Validated	NA|554aa|up_0|NZ_CP022898.1_2391372_2393034_-	PRK05414, PRK05414, urocanate hydratase; Provisional	NA|312aa|down_0|NZ_CP022898.1_2394936_2395872_-	PRK13774, PRK13774, formimidoylglutamase; Provisional	NA|419aa|down_1|NZ_CP022898.1_2396161_2397418_+	COG1266, COG1266, Predicted metal-dependent membrane protease [General function prediction only]	NA|229aa|down_2|NZ_CP022898.1_2397482_2398169_-	PRK13978, PRK13978, ribose 5-phosphate isomerase A	NA|218aa|down_3|NZ_CP022898.1_2398339_2398993_+	COG2258, COG2258, Uncharacterized protein conserved in bacteria [Function unknown]	NA|340aa|down_4|NZ_CP022898.1_2399228_2400248_-	cd09019, galactose_mutarotase_like, galactose mutarotase_like	NA|109aa|down_5|NZ_CP022898.1_2400277_2400604_-	COG1742, COG1742, Uncharacterized conserved protein [Function unknown]	NA|62aa|down_6|NZ_CP022898.1_2400652_2400838_-	NA	NA|411aa|down_7|NZ_CP022898.1_2400821_2402054_-	COG1668, NatB, ABC-type Na+ efflux pump, permease component [Energy production and conversion / Inorganic ion transport and metabolism]	NA|300aa|down_8|NZ_CP022898.1_2402046_2402946_-	COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only]	NA|219aa|down_9|NZ_CP022898.1_2403176_2403833_-	COG3152, COG3152, Predicted membrane protein [Function unknown]
GCF_003354605.1_ASM335460v1	NZ_CP022898	Staphylococcus aureus strain 422 chromosome, complete genome	8	2480875-2480966	8	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	TGCGTTCCTTTATTTTCTGCGAA	23	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|35aa|up_2|NZ_CP022898.1_2478532_2478637_+,NA|40aa|down_0|NZ_CP022898.1_2481162_2481282_-	NA|200aa|up_9|NZ_CP022898.1_2472009_2472609_-	COG1651, DsbG, Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]	NA|121aa|up_8|NZ_CP022898.1_2472627_2472990_-	pfam14729, DUF4467, Domain of unknown function with cystatin-like fold (DUF4467)	NA|417aa|up_7|NZ_CP022898.1_2473244_2474495_+	pfam02388, FemAB, FemAB family	NA|244aa|up_6|NZ_CP022898.1_2474591_2475323_-	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]	NA|240aa|up_5|NZ_CP022898.1_2475319_2476039_-	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|260aa|up_4|NZ_CP022898.1_2476019_2476799_-	cd13711, PBP2_Ngo0372_TcyA, Substrate binding domain of ABC transporters involved in cystine import; the type 2 periplasmic binding protein fold	NA|480aa|up_3|NZ_CP022898.1_2476919_2478359_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|35aa|up_2|NZ_CP022898.1_2478532_2478637_+	NA	NA|229aa|up_1|NZ_CP022898.1_2478790_2479477_-	PRK14119, gpmA, phosphoglyceromutase; Provisional	NA|289aa|up_0|NZ_CP022898.1_2479803_2480670_-	COG0053, MMT1, Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]	NA|40aa|down_0|NZ_CP022898.1_2481162_2481282_-	NA	NA|437aa|down_1|NZ_CP022898.1_2481376_2482687_+	pfam11621, Sbi-IV, C3 binding domain 4 of IgG-bind protein SBI	NA|310aa|down_2|NZ_CP022898.1_2483176_2484106_+	pfam07968, Leukocidin, Leukocidin/Hemolysin toxin family	NA|316aa|down_3|NZ_CP022898.1_2484674_2485622_+	pfam07968, Leukocidin, Leukocidin/Hemolysin toxin family	NA|326aa|down_4|NZ_CP022898.1_2485623_2486601_+	TIGR01002, synergohymenotropic_toxin, beta-channel forming cytolysin	NA|156aa|down_5|NZ_CP022898.1_2486652_2487120_-	pfam06177, QueT, QueT transporter	NA|231aa|down_6|NZ_CP022898.1_2487130_2487823_-	COG1424, BioW, Pimeloyl-CoA synthetase [Coenzyme metabolism]	NA|372aa|down_7|NZ_CP022898.1_2487833_2488949_-	COG0156, BioF, 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism]	NA|336aa|down_8|NZ_CP022898.1_2488926_2489934_-	PRK06256, PRK06256, biotin synthase; Validated	NA|453aa|down_9|NZ_CP022898.1_2489935_2491294_-	TIGR00508, hypothetical_protein_DESPIG_00326, adenosylmethionine-8-amino-7-oxononanoate transaminase
GCF_003354605.1_ASM335460v1	NZ_CP022898	Staphylococcus aureus strain 422 chromosome, complete genome	9	2763333-2763434	9	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	TGAGTCAGATACACTCGTTGAACC	24	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|632aa|up_7|NZ_CP022898.1_2749697_2751593_-,NA|318aa|down_1|NZ_CP022898.1_2771255_2772209_+,NA|315aa|down_2|NZ_CP022898.1_2772270_2773215_+,NA|101aa|down_3|NZ_CP022898.1_2773201_2773504_+,NA|120aa|down_4|NZ_CP022898.1_2773652_2774012_+	NA|523aa|up_9|NZ_CP022898.1_2747134_2748702_+	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|187aa|up_8|NZ_CP022898.1_2748970_2749531_-	cd00431, cysteine_hydrolases, Cysteine hydrolases; This family contains amidohydrolases, like CSHase (N-carbamoylsarcosine amidohydrolase), involved in creatine metabolism and nicotinamidase, converting nicotinamide to nicotinic acid and ammonia in the pyridine nucleotide cycle	NA|632aa|up_7|NZ_CP022898.1_2749697_2751593_-	NA	NA|453aa|up_6|NZ_CP022898.1_2751833_2753192_-	TIGR02919, conserved_hypothetical_protein, accessory Sec system glycosyltransferase GtfB	NA|503aa|up_5|NZ_CP022898.1_2753184_2754693_-	TIGR02918, lipopolysaccharide_biosynthesis_protein, accessory Sec system glycosylation protein GtfA	NA|797aa|up_4|NZ_CP022898.1_2754710_2757101_-	TIGR03714, Protein_translocase_subunit_SecA_2, accessory Sec system translocase SecA2	NA|320aa|up_3|NZ_CP022898.1_2757090_2758050_-	TIGR03711, acc_sec_asp3, accessory Sec system protein Asp3	NA|523aa|up_2|NZ_CP022898.1_2758027_2759596_-	TIGR03712, acc_sec_asp2, accessory Sec system protein Asp2	NA|518aa|up_1|NZ_CP022898.1_2759585_2761139_-	TIGR03713, acc_sec_asp1, accessory Sec system protein Asp1	NA|404aa|up_0|NZ_CP022898.1_2761149_2762361_-	PRK12417, secY, preprotein translocase subunit SecY; Reviewed	NA|231aa|down_0|NZ_CP022898.1_2770249_2770942_-	COG1853, COG1853, Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family [General function prediction only]	NA|318aa|down_1|NZ_CP022898.1_2771255_2772209_+	NA	NA|315aa|down_2|NZ_CP022898.1_2772270_2773215_+	NA	NA|101aa|down_3|NZ_CP022898.1_2773201_2773504_+	NA	NA|120aa|down_4|NZ_CP022898.1_2773652_2774012_+	NA	NA|204aa|down_5|NZ_CP022898.1_2774096_2774708_-	COG1853, COG1853, Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family [General function prediction only]	NA|159aa|down_6|NZ_CP022898.1_2774786_2775263_-	PRK05528, PRK05528, peptide-methionine (S)-S-oxide reductase	NA|167aa|down_7|NZ_CP022898.1_2775265_2775766_-	pfam13673, Acetyltransf_10, Acetyltransferase (GNAT) domain	NA|256aa|down_8|NZ_CP022898.1_2776000_2776768_-	COG4464, CapC, Capsular polysaccharide biosynthesis protein [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]	NA|231aa|down_9|NZ_CP022898.1_2776764_2777457_-	cd05387, BY-kinase, bacterial tyrosine-kinase
GCF_003354605.1_ASM335460v1	NZ_CP022898	Staphylococcus aureus strain 422 chromosome, complete genome	10	2783338-2783416	10	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	TTCTCTATGTTGGGGCCCCGCCAA	24	1	17	2783362-2783392|2783362-2783392|2783362-2783392|2783362-2783392|2783362-2783392|2783362-2783392|2783362-2783392|2783362-2783392|2783362-2783392|2783362-2783392|2783362-2783392|2783362-2783392|2783362-2783392|2783362-2783392|2783362-2783392|2783362-2783392|2783362-2783392	NZ_CP022898.1_1023994-1024024|NZ_CP022898.1_1648132-1648162|NZ_CP022898.1_1648190-1648220|NZ_CP022898.1_2818138-2818168|NZ_CP022898.1_236701-236731|NZ_CP022898.1_596417-596387|NZ_CP022898.1_768393-768423|NZ_CP022898.1_926089-926119|NZ_CP022898.1_1053727-1053757|NZ_CP022898.1_1682272-1682302|NZ_CP022898.1_1977462-1977492|NZ_CP022898.1_329436-329406|NZ_CP022898.1_481179-481149|NZ_CP022898.1_481237-481207|NZ_CP022898.1_777377-777407|NZ_CP022898.1_816827-816797|NZ_CP022898.1_1770475-1770445	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA,NA	NA|159aa|up_9|NZ_CP022898.1_2774786_2775263_-	PRK05528, PRK05528, peptide-methionine (S)-S-oxide reductase	NA|167aa|up_8|NZ_CP022898.1_2775265_2775766_-	pfam13673, Acetyltransf_10, Acetyltransferase (GNAT) domain	NA|256aa|up_7|NZ_CP022898.1_2776000_2776768_-	COG4464, CapC, Capsular polysaccharide biosynthesis protein [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]	NA|231aa|up_6|NZ_CP022898.1_2776764_2777457_-	cd05387, BY-kinase, bacterial tyrosine-kinase	NA|221aa|up_5|NZ_CP022898.1_2777473_2778136_-	COG3944, COG3944, Capsular polysaccharide biosynthesis protein [Cell envelope biogenesis, outer membrane]	NA|187aa|up_4|NZ_CP022898.1_2778983_2779544_-	pfam18665, TetR_C_37, Tetracyclin repressor-like, C-terminal domain	NA|413aa|up_3|NZ_CP022898.1_2779707_2780946_+	TIGR03937, Poly-beta-16-N-acetyl-D-glucosamine_synthase, poly-beta-1,6 N-acetyl-D-glucosamine synthase	NA|102aa|up_2|NZ_CP022898.1_2780909_2781215_+	TIGR03932, IcaD_partial, intracellular adhesion protein D	NA|291aa|up_1|NZ_CP022898.1_2781211_2782084_+	TIGR03933, Poly-beta-16-N-acetyl-D-glucosamine_N-deacetylase, intercellular adhesin biosynthesis polysaccharide N-deacetylase	NA|351aa|up_0|NZ_CP022898.1_2782070_2783123_+	COG3936, COG3936, Protein involved in polysaccharide intercellular adhesin (PIA) synthesis/biofilm formation [Carbohydrate transport and metabolism]	NA|681aa|down_0|NZ_CP022898.1_2783513_2785556_-	COG1075, LipA, Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold [General function prediction only]	NA|211aa|down_1|NZ_CP022898.1_2787081_2787714_-	PRK02759, PRK02759, bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE	NA|253aa|down_2|NZ_CP022898.1_2787710_2788469_-	PRK02083, PRK02083, imidazole glycerol phosphate synthase subunit HisF; Provisional	NA|235aa|down_3|NZ_CP022898.1_2788465_2789170_-	PRK13587, PRK13587, 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional	NA|193aa|down_4|NZ_CP022898.1_2789162_2789741_-	PRK13142, hisH, imidazole glycerol phosphate synthase subunit HisH; Provisional	NA|193aa|down_5|NZ_CP022898.1_2789737_2790316_-	cd07914, IGPD, Imidazoleglycerol-phosphate dehydratase	NA|338aa|down_6|NZ_CP022898.1_2790284_2791298_-	COG0079, HisC, Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism]	NA|417aa|down_7|NZ_CP022898.1_2791313_2792564_-	PRK13770, PRK13770, histidinol dehydrogenase; Provisional	NA|205aa|down_8|NZ_CP022898.1_2792556_2793171_-	PRK13584, hisG, ATP phosphoribosyltransferase	NA|273aa|down_9|NZ_CP022898.1_2793188_2794007_-	PRK12294, hisZ, ATP phosphoribosyltransferase regulatory subunit; Provisional
