The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP022904	Staphylococcus aureus strain 629 chromosome, complete genome	2913334	683756	734534	2913334	transposase	Staphylococcus_phage(26.67%)	47	NA	NA
WP_000195429.1|683756_684929_+|transposase	IS256-like element IS256 family transposase	transposase	A0A0N9STL0	Staphylococcus_phage	100.0	3.5e-135
WP_001037440.1|685028_686150_+	membrane protein	NA	NA	NA	NA	NA
WP_000700882.1|686127_686643_+	YbhB/YbcL family Raf kinase inhibitor-like protein	NA	NA	NA	NA	NA
WP_000769694.1|686953_687388_+	MAP domain-containing protein	NA	NA	NA	NA	NA
WP_000682089.1|687644_687830_-	YjzD family protein	NA	NA	NA	NA	NA
WP_001100526.1|688124_689066_+	ketoacyl-ACP synthase III	NA	NA	NA	NA	NA
WP_000081231.1|689077_690322_+	beta-ketoacyl-ACP synthase II	NA	NA	NA	NA	NA
WP_000915157.1|690376_690748_-	DUF3899 domain-containing protein	NA	NA	NA	NA	NA
WP_000521533.1|690990_691917_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_000829632.1|691916_692987_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_000140050.1|693002_694085_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	28.8	8.4e-19
WP_000786734.1|694074_695016_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	32.9	8.3e-23
WP_000197018.1|695034_696690_+	peptide ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_000517183.1|696901_698617_+	oligopeptide ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_001067052.1|698667_699654_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	29.6	1.4e-15
WP_000284571.1|700248_701853_+|transposase	IS1182-like element IS1182 family transposase	transposase	A0ZS58	Staphylococcus_virus	44.4	1.1e-128
WP_001812877.1|702087_702609_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001030803.1|703657_703846_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000119692.1|704864_705212_+	helix-turn-helix transcriptional regulator	NA	E4ZFI8	Streptococcus_phage	35.8	1.9e-12
WP_078065292.1|706560_707472_-	protein rep	NA	NA	NA	NA	NA
WP_012816671.1|707508_708183_+|transposase	IS6 family transposase	transposase	A0A0N9RU54	Staphylococcus_phage	86.6	7.6e-111
WP_000793183.1|709845_710454_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000889979.1|710931_711027_+	type I toxin-antitoxin system Fst family toxin	NA	NA	NA	NA	NA
WP_001105988.1|711263_711938_+|transposase	IS6-like element IS257 family transposase	transposase	A0A0N9RU54	Staphylococcus_phage	99.1	2.6e-127
WP_000377078.1|712056_712572_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000790333.1|712766_713417_-	organomercurial lyase MerB	NA	NA	NA	NA	NA
WP_000193219.1|713498_715142_-	mercury(II) reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	29.4	1.7e-50
WP_001835006.1|715199_715574_-	mercuric transport protein MerT	NA	NA	NA	NA	NA
WP_000010352.1|715661_716342_-	cytochrome c biosynthesis protein	NA	NA	NA	NA	NA
WP_000746202.1|716338_716824_-	TlpA family protein disulfide reductase	NA	NA	NA	NA	NA
WP_000525462.1|716840_717248_-	Hg(II)-responsive transcriptional regulator MerR	NA	NA	NA	NA	NA
WP_001105988.1|718346_719021_+|transposase	IS6-like element IS257 family transposase	transposase	A0A0N9RU54	Staphylococcus_phage	99.1	2.6e-127
WP_000003264.1|719255_721439_-	cadmium-translocating P-type ATPase CadA	NA	E4ZFI9	Streptococcus_phage	64.0	8.1e-255
WP_000726007.1|721431_721800_-	Cd(II)/Pb(II)/Zn(II)-sensing metalloregulatory transcriptional repressor CadC	NA	E4ZFI8	Streptococcus_phage	85.2	4.2e-55
WP_001096374.1|723314_725072_+	beta-lactam sensor/signal transducer BlaR1	NA	NA	NA	NA	NA
WP_001284653.1|725061_725442_+	penicillinase repressor BlaI	NA	NA	NA	NA	NA
WP_000690625.1|725705_726284_+	recombinase family protein	NA	A0A0A7NPV4	Enterobacteria_phage	51.1	4.2e-41
WP_000583528.1|726409_727018_+	recombinase family protein	NA	M9Q1K0	Clostridium_phage	34.4	3.6e-19
WP_001049146.1|727263_727602_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000797248.1|727606_727792_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_001807342.1|727924_728491_-	multidrug-binding transcriptional regulator QacR	NA	NA	NA	NA	NA
WP_000622776.1|728668_730213_+	quaternary ammonium compound efflux MFS transporter QacA	NA	NA	NA	NA	NA
WP_001077893.1|730417_730978_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001807343.1|731053_731176_+	HAD hydrolase family protein	NA	NA	NA	NA	NA
WP_000848988.1|731293_732064_-	DUF536 domain-containing protein	NA	NA	NA	NA	NA
WP_115276798.1|732507_732801_+	replication initiator protein A	NA	NA	NA	NA	NA
WP_000284571.1|732929_734534_+|transposase	IS1182-like element IS1182 family transposase	transposase	A0ZS58	Staphylococcus_virus	44.4	1.1e-128
>prophage 2
NZ_CP022904	Staphylococcus aureus strain 629 chromosome, complete genome	2913334	806655	815128	2913334		Synechococcus_phage(33.33%)	9	NA	NA
WP_000861572.1|806655_807138_+	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	44.7	6.2e-22
WP_001010413.1|807124_808249_+	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA	NA
WP_000174053.1|808252_808957_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	M4R1E8	Synechococcus_phage	42.1	7.3e-48
WP_000848350.1|808956_809220_+	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
WP_000666806.1|809221_809893_+	phosphoribosylformylglycinamidine synthase I	NA	NA	NA	NA	NA
WP_000032740.1|809885_812075_+	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	39.8	3.5e-141
WP_000483721.1|812053_813538_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	31.7	2.5e-45
WP_000030811.1|813530_814559_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	41.7	3.4e-62
WP_000238669.1|814561_815128_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	40.1	6.1e-29
>prophage 3
NZ_CP022904	Staphylococcus aureus strain 629 chromosome, complete genome	2913334	866932	912644	2913334	tail,head,capsid,portal,terminase,holin,plate	Staphylococcus_phage(73.13%)	71	NA	NA
WP_000401377.1|866932_867415_+	pantetheine-phosphate adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	46.2	2.6e-28
WP_000843611.1|867476_868616_-	nucleotidyltransferase	NA	NA	NA	NA	NA
WP_000872158.1|868742_869300_+	DUF177 domain-containing protein	NA	NA	NA	NA	NA
WP_000290472.1|869379_869553_+	50S ribosomal protein L32	NA	NA	NA	NA	NA
WP_000861313.1|869669_871055_-	recombinase family protein	NA	I1W625	Staphylococcus_phage	100.0	2.5e-265
WP_000392109.1|871261_871942_-	hypothetical protein	NA	A0A2H4PQQ5	Staphylococcus_phage	100.0	5.1e-123
WP_000525007.1|871973_872438_-	hypothetical protein	NA	A0A0N9BAX8	Staphylococcus_phage	100.0	8.4e-85
WP_001260487.1|872450_872774_-	helix-turn-helix transcriptional regulator	NA	A0A0H3U2V8	Staphylococcus_phage	100.0	2.0e-53
WP_000272859.1|872937_873186_+	helix-turn-helix transcriptional regulator	NA	A0A2K9VBT6	Staphylococcus_phage	100.0	1.7e-39
WP_023487065.1|873198_873642_+	hypothetical protein	NA	W5R971	Staphylococcus_phage	99.3	4.4e-75
WP_000939498.1|873656_873800_+	hypothetical protein	NA	W5R8I6	Staphylococcus_phage	100.0	2.5e-16
WP_000642492.1|873789_873999_-	hypothetical protein	NA	W5R9J5	Staphylococcus_phage	100.0	1.2e-30
WP_000933363.1|874438_874624_+	helix-turn-helix transcriptional regulator	NA	S4SUN2	Staphylococcus_phage	100.0	1.7e-25
WP_023487064.1|874625_875378_+	phage antirepressor protein	NA	A0A1X9H0A0	Staphylococcus_phage	99.6	4.3e-139
WP_000395455.1|875544_875775_-	hypothetical protein	NA	C8CGY3	Staphylococcus_phage	100.0	2.3e-35
WP_000066026.1|875954_876116_+	DUF1270 family protein	NA	C8CGY5	Staphylococcus_phage	100.0	2.5e-20
WP_000291076.1|876209_876470_+	DUF1108 family protein	NA	Q4ZDR5	Staphylococcus_virus	98.8	5.8e-43
WP_000815403.1|876479_876701_+	DUF2483 domain-containing protein	NA	A0A1X9H047	Staphylococcus_phage	100.0	1.2e-33
WP_000139720.1|876693_877317_+	DUF1071 domain-containing protein	NA	A0A2H4PQQ6	Staphylococcus_phage	100.0	1.4e-114
WP_000934384.1|877316_877742_+	single-stranded DNA-binding protein	NA	B7T0A5	Staphylococcus_virus	88.7	1.6e-58
WP_001004506.1|877752_878304_+	HNH endonuclease	NA	A0A2H4PQR4	Staphylococcus_phage	100.0	1.6e-106
WP_015445893.1|878304_878979_+	hypothetical protein	NA	Q4ZCW9	Staphylococcus_virus	97.8	2.0e-127
WP_001037657.1|878971_879727_+	DnaD domain protein	NA	C8CGZ1	Staphylococcus_phage	100.0	3.8e-143
WP_001132243.1|879726_880083_+	hypothetical protein	NA	M9NS37	Staphylococcus_phage	100.0	8.2e-64
WP_015445891.1|880079_881321_+	AAA family ATPase	NA	M9NSS7	Staphylococcus_phage	99.8	5.7e-229
WP_001024405.1|881317_881533_+	hypothetical protein	NA	Q4ZBU5	Staphylococcus_virus	100.0	4.8e-35
WP_001123688.1|881536_881758_+	DUF3269 family protein	NA	Q9G021	Staphylococcus_phage	100.0	1.3e-35
WP_000451861.1|881767_882193_+	phage N-6-adenine-methyltransferase	NA	C8CGZ6	Staphylococcus_phage	100.0	4.7e-82
WP_031895320.1|882189_882594_+	DUF1064 domain-containing protein	NA	A0A0H4ISQ5	Staphylococcus_phage	99.3	2.6e-66
WP_001187230.1|882598_882784_+	DUF3113 family protein	NA	A0A0N9BBI1	Staphylococcus_phage	100.0	1.9e-27
WP_111023892.1|882819_882870_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000022735.1|882869_883124_+	DUF3310 domain-containing protein	NA	D2JGL1	Staphylococcus_phage	100.0	1.3e-42
WP_012068339.1|883123_883372_+	hypothetical protein	NA	Q4ZBK9	Staphylococcus_phage	100.0	1.2e-42
WP_000695762.1|883384_883786_+	hypothetical protein	NA	Q4ZAC1	Staphylococcus_virus	100.0	1.1e-69
WP_000979209.1|883782_884130_+	hypothetical protein	NA	D2JGL4	Staphylococcus_phage	100.0	5.9e-59
WP_000144710.1|884126_884435_+	hypothetical protein	NA	Q4ZD83	Staphylococcus_virus	100.0	6.2e-52
WP_001065023.1|884427_884664_+	DUF1024 family protein	NA	C8CH04	Staphylococcus_phage	100.0	1.1e-35
WP_000185654.1|884668_885211_+	dUTP pyrophosphatase	NA	Q4ZD81	Staphylococcus_virus	100.0	1.5e-96
WP_031870335.1|885247_885484_+	DUF1381 domain-containing protein	NA	C8CH06	Staphylococcus_phage	98.7	2.4e-35
WP_031870336.1|885508_885745_+	hypothetical protein	NA	A0A0N7E0U3	Staphylococcus_phage	97.4	1.8e-35
WP_000591891.1|885737_885911_+	transcriptional activator RinB	NA	R4IFL3	Staphylococcus_phage	98.2	1.1e-21
WP_000989960.1|885911_886058_+	hypothetical protein	NA	Q4ZBJ8	Staphylococcus_phage	100.0	7.5e-16
WP_000162701.1|886081_886504_+	RinA family phage transcriptional activator	NA	A0A0F6N3E5	Staphylococcus_phage	100.0	1.2e-74
WP_029656172.1|887009_887327_+	hypothetical protein	NA	A0A2I6PCU5	Staphylococcus_phage	95.2	7.3e-48
WP_001606760.1|887319_888528_+|terminase	PBSX family phage terminase large subunit	terminase	R4IG95	Staphylococcus_phage	100.0	6.1e-236
WP_049955470.1|888481_889960_+|portal	phage portal protein	portal	Q4ZB45	Staphylococcus_virus	99.6	4.3e-284
WP_015978359.1|889898_890879_+|capsid	minor capsid protein	capsid	Q4ZB44	Staphylococcus_virus	100.0	1.2e-181
WP_000366930.1|890976_891501_+	hypothetical protein	NA	Q4ZB42	Staphylococcus_virus	100.0	2.9e-65
WP_001044072.1|891512_892472_+	hypothetical protein	NA	Q4ZB40	Staphylococcus_virus	100.0	1.9e-179
WP_031870340.1|892488_892815_+	Rho termination protein	NA	Q4ZB39	Staphylococcus_virus	99.1	1.0e-52
WP_015978368.1|892814_893129_+	hypothetical protein	NA	Q4ZB38	Staphylococcus_virus	100.0	2.6e-53
WP_031870341.1|893121_893457_+|head	phage head closure protein	head	A7YGU9	Staphylococcus_virus	98.2	8.8e-60
WP_044593020.1|893443_893734_+	HK97 gp10 family phage protein	NA	A0A0E3XCY8	Staphylococcus_phage	98.8	3.8e-43
WP_044593021.1|893826_894510_+	hypothetical protein	NA	W5RA17	Staphylococcus_phage	46.2	1.2e-42
WP_000270190.1|894872_895298_+	DUF3168 domain-containing protein	NA	A0A0E3XBP2	Staphylococcus_phage	100.0	1.2e-74
WP_000057582.1|895298_895856_+|tail	tail protein	tail	Q4ZBQ8	Staphylococcus_phage	100.0	8.2e-103
WP_000134337.1|895922_896429_+	hypothetical protein	NA	Q4ZBQ7	Staphylococcus_phage	100.0	2.7e-92
WP_000880587.1|896473_896758_+	hypothetical protein	NA	A0A0N7E0V9	Staphylococcus_phage	100.0	8.8e-45
WP_031870344.1|896761_899647_+|terminase	terminase	terminase	A0A2H4JGV1	uncultured_Caudovirales_phage	95.3	0.0e+00
WP_001604155.1|899661_900603_+	hypothetical protein	NA	A0A2H4JFG3	uncultured_Caudovirales_phage	99.0	2.8e-180
WP_001604154.1|900613_902500_+	hypothetical protein	NA	A0A0H3U2R3	Staphylococcus_phage	100.0	0.0e+00
WP_000323256.1|902512_904411_+	hypothetical protein	NA	A0A0H3U448	Staphylococcus_phage	98.4	0.0e+00
WP_023487056.1|904410_906234_+|plate	BppU family phage baseplate upper protein	plate	M9NUJ5	Staphylococcus_phage	97.7	1.8e-292
WP_000705893.1|906233_906611_+	DUF2977 domain-containing protein	NA	Q8LTH7	Staphylococcus_phage	100.0	7.3e-55
WP_001790193.1|906614_906788_+	XkdX family protein	NA	Q8LTH6	Staphylococcus_phage	100.0	1.7e-27
WP_000466769.1|906828_907128_+	DUF2951 domain-containing protein	NA	Q4ZBP8	Staphylococcus_phage	100.0	1.3e-46
WP_000524043.1|907264_909139_+	CHAP domain-containing protein	NA	Q4ZBP7	Staphylococcus_phage	100.0	0.0e+00
WP_033860047.1|909151_910324_+|plate	BppU family phage baseplate upper protein	plate	A0A0N9BAZ1	Staphylococcus_phage	98.5	4.3e-194
WP_000398878.1|910329_910725_+	hypothetical protein	NA	Q4ZBP5	Staphylococcus_phage	100.0	2.7e-68
WP_000354128.1|910780_911218_+|holin	phage holin	holin	S4SVG2	Staphylococcus_phage	99.3	4.1e-73
WP_001148135.1|911198_912644_+	CHAP domain-containing protein	NA	Q4ZB16	Staphylococcus_virus	100.0	4.8e-296
>prophage 4
NZ_CP022904	Staphylococcus aureus strain 629 chromosome, complete genome	2913334	1481158	1490201	2913334	tRNA	uncultured_Mediterranean_phage(50.0%)	7	NA	NA
WP_000364542.1|1481158_1481677_-	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	46.5	5.6e-29
WP_000595011.1|1481698_1483972_-	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	29.3	8.1e-64
WP_000749795.1|1484174_1486454_-	protein translocase subunit SecDF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.8	1.8e-31
WP_001160682.1|1486728_1486989_-	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	35.3	8.2e-05
WP_001112045.1|1487007_1488147_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.7	5.4e-85
WP_001019178.1|1488169_1489195_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_001005768.1|1489196_1490201_-	Holliday junction branch migration DNA helicase RuvB	NA	B3GAM6	uncultured_virus	29.1	1.7e-05
>prophage 5
NZ_CP022904	Staphylococcus aureus strain 629 chromosome, complete genome	2913334	1627424	1679932	2913334	protease,transposase,tRNA	Staphylococcus_phage(95.35%)	54	NA	NA
WP_001108730.1|1627424_1629839_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	99.5	0.0e+00
WP_001025067.1|1630129_1631311_-	MFS transporter	NA	A0A2H4PQR6	Staphylococcus_phage	99.7	7.3e-218
WP_000526539.1|1631420_1632374_+	TIGR01212 family radical SAM protein	NA	A0A2H4PQV5	Staphylococcus_phage	100.0	2.2e-79
WP_000764419.1|1632370_1632934_+	methyltransferase domain-containing protein	NA	A0A2H4PQV0	Staphylococcus_phage	99.5	8.3e-103
WP_000757543.1|1633056_1633458_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000266096.1|1634029_1634857_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_001790712.1|1634859_1634979_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001196362.1|1635090_1636092_+	proline dehydrogenase	NA	A0A2H4PQT6	Staphylococcus_phage	99.4	2.6e-184
WP_001008549.1|1636213_1636678_-	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	100.0	4.5e-70
WP_001159036.1|1636690_1637872_-	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	NA	A0A2H4PQS2	Staphylococcus_phage	99.2	2.1e-225
WP_000493887.1|1637882_1638515_-	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	98.6	5.5e-111
WP_000384185.1|1638521_1639553_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	98.8	4.0e-196
WP_001261668.1|1640045_1641548_-	FAD-dependent oxidoreductase	NA	A0A2H4PQX2	Staphylococcus_phage	98.6	1.9e-29
WP_000221177.1|1642070_1642385_+	winged helix-turn-helix transcriptional regulator	NA	A0A2H4PQT4	Staphylococcus_phage	98.1	9.8e-53
WP_000989121.1|1642384_1643677_+	arsenite efflux transporter membrane subunit ArsB	NA	A0A2H4PQU3	Staphylococcus_phage	99.5	5.0e-228
WP_001032833.1|1643763_1644618_-	autolysin	NA	Q4ZCC7	Staphylococcus_virus	38.6	9.8e-39
WP_000384171.1|1644893_1645118_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000671057.1|1645316_1645787_+	RNA polymerase sigma factor	NA	A0A2H4PQT5	Staphylococcus_phage	98.1	8.8e-82
WP_001153742.1|1645899_1646343_+	competence protein ComK	NA	NA	NA	NA	NA
WP_001030469.1|1646329_1646773_-	hypothetical protein	NA	A0A2H4PQT8	Staphylococcus_phage	98.6	2.4e-57
WP_001168903.1|1647068_1647704_+|protease	CPBP family intramembrane metalloprotease SdpA	protease	NA	NA	NA	NA
WP_001096494.1|1648143_1648857_-	transaldolase	NA	M1PR54	Cyanophage	35.3	5.5e-19
WP_000091442.1|1649116_1649419_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001200542.1|1649674_1650040_+	fluoride efflux transporter CrcB	NA	A0A2H4PQR0	Staphylococcus_phage	100.0	3.6e-59
WP_031870300.1|1650036_1650390_+	CrcB family protein	NA	A0A2H4PQQ7	Staphylococcus_phage	88.0	6.5e-13
WP_000453306.1|1652386_1653220_-	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	99.3	7.8e-158
WP_000366163.1|1653431_1654340_-	NERD domain-containing protein	NA	A0A2H4PQQ8	Staphylococcus_phage	100.0	3.4e-138
WP_000933820.1|1654461_1655658_-	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	99.5	4.3e-218
WP_000109906.1|1656029_1657622_+	phosphoenolpyruvate carboxykinase (ATP)	NA	A0A2H4PQN1	Staphylococcus_phage	100.0	0.0e+00
WP_001822900.1|1657999_1658746_-	S9 family peptidase	NA	A0A2H4PQM6	Staphylococcus_phage	98.8	1.4e-142
WP_000672013.1|1658750_1659224_-	nucleoside triphosphatase YtkD	NA	A0A2H4PQM4	Staphylococcus_phage	98.7	7.2e-84
WP_000718107.1|1659289_1659547_+	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	100.0	7.2e-46
WP_000778528.1|1659543_1660545_-	o-succinylbenzoate synthase	NA	A0A2H4PQM0	Staphylococcus_phage	97.3	5.3e-185
WP_000348364.1|1660549_1662028_-	o-succinylbenzoate--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	97.6	2.8e-283
WP_012840523.1|1662186_1662642_-	DUF4909 domain-containing protein	NA	A0A2H4PQN7	Staphylococcus_phage	99.3	3.6e-80
WP_001795210.1|1662944_1663595_+	calcium-binding protein	NA	A0A2H4PQM8	Staphylococcus_phage	94.0	2.9e-51
WP_000070642.1|1663675_1664671_+	DUF4352 domain-containing protein	NA	A0A2H4PQN2	Staphylococcus_phage	97.9	2.6e-67
WP_000669024.1|1664745_1665372_+	hypothetical protein	NA	A0A2H4PQM7	Staphylococcus_phage	79.8	3.1e-74
WP_000627540.1|1665412_1665754_+	DUF3969 family protein	NA	A0A2H4PQN6	Staphylococcus_phage	94.7	1.1e-54
WP_000414216.1|1665854_1666427_+	hypothetical protein	NA	A0A2H4PQN4	Staphylococcus_phage	93.1	2.3e-23
WP_001801861.1|1667781_1667877_+	type I toxin-antitoxin system Fst family toxin PepA1	NA	NA	NA	NA	NA
WP_001792025.1|1667999_1668101_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000072627.1|1669176_1670406_-	restriction endonuclease subunit S	NA	A0A2H4PQP5	Staphylococcus_phage	64.7	4.0e-134
WP_001793440.1|1670398_1672138_-	type I restriction-modification system subunit M	NA	A0A2H4PQP4	Staphylococcus_phage	100.0	2.4e-289
WP_001791797.1|1672118_1672253_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001038752.1|1672315_1673035_-|protease	serine protease SplF	protease	A0A2H4PQP1	Staphylococcus_phage	99.6	1.9e-131
WP_011447030.1|1673136_1673244_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001038704.1|1673192_1673912_-|protease	serine protease SplD	protease	A0A2H4PQP9	Staphylococcus_phage	99.6	4.6e-130
WP_001038873.1|1674032_1674752_-|protease	serine protease SplC	protease	A0A2H4PQP7	Staphylococcus_phage	98.3	8.6e-129
WP_001039454.1|1674809_1675532_-|protease	serine protease SplB	protease	A0A2H4PQN0	Staphylococcus_phage	98.3	3.5e-130
WP_001039426.1|1675656_1676364_-|protease	serine protease SplA	protease	A0A2H4PQN3	Staphylococcus_phage	96.6	5.1e-126
WP_000195429.1|1677337_1678510_-|transposase	IS256-like element IS256 family transposase	transposase	A0A0N9STL0	Staphylococcus_phage	100.0	3.5e-135
WP_001092780.1|1678659_1679241_+	DUF4888 domain-containing protein	NA	A0A2H4PQH6	Staphylococcus_phage	64.8	9.6e-54
WP_000469591.1|1679713_1679932_-	hypothetical protein	NA	A0A2H4PQH0	Staphylococcus_phage	80.6	2.0e-25
>prophage 6
NZ_CP022904	Staphylococcus aureus strain 629 chromosome, complete genome	2913334	1778954	1874773	2913334	tail,head,capsid,transposase,protease,tRNA,portal,terminase,holin,integrase	Staphylococcus_phage(87.34%)	115	1775335:1775359	1877008:1877032
1775335:1775359	attL	ACCCCAACTTGCATTGTCTGTAGAA	NA	NA	NA	NA
WP_000170162.1|1778954_1779257_-|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC	tRNA	NA	NA	NA	NA
WP_000957020.1|1779623_1781162_+	sodium/proline symporter PutP	NA	NA	NA	NA	NA
WP_000831700.1|1781250_1782450_-	CamS family sex pheromone protein	NA	NA	NA	NA	NA
WP_000774556.1|1782462_1784466_-	NAD-dependent DNA ligase LigA	NA	A0A0K2QQN8	Ralstonia_phage	36.2	1.2e-114
WP_000992924.1|1784469_1786662_-	DNA helicase PcrA	NA	A7KV33	Bacillus_phage	42.2	1.0e-135
WP_000272056.1|1786658_1787351_-	heptaprenylglyceryl phosphate synthase	NA	NA	NA	NA	NA
WP_001165363.1|1787522_1787825_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000572878.1|1787933_1789229_-	adenylosuccinate lyase	NA	A0A1B3B081	Gordonia_phage	32.9	1.6e-16
WP_000827746.1|1790088_1791255_+|protease	cysteine protease staphopain A	protease	NA	NA	NA	NA
WP_000434933.1|1791285_1791612_+	staphostatin A	NA	NA	NA	NA	NA
WP_000669862.1|1791903_1792077_-	NETI motif-containing protein	NA	NA	NA	NA	NA
WP_000011542.1|1792057_1792660_-	DUF2179 domain-containing protein	NA	NA	NA	NA	NA
WP_000040866.1|1792930_1793752_-	ammonia-dependent NAD(+) synthetase	NA	G3MA24	Bacillus_virus	52.7	2.3e-69
WP_000284436.1|1793744_1795214_-	nicotinate phosphoribosyltransferase	NA	G3MA18	Bacillus_virus	45.1	5.9e-108
WP_000897635.1|1795397_1796474_+	nitric oxide synthase oxygenase	NA	NA	NA	NA	NA
WP_001177828.1|1796493_1797288_+	prephenate dehydratase	NA	NA	NA	NA	NA
WP_001802312.1|1797359_1797467_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000323161.1|1797477_1799040_-	SLC13 family permease	NA	NA	NA	NA	NA
WP_000275727.1|1799244_1800342_-	pectate lyase	NA	U5PWM6	Bacillus_phage	34.6	3.3e-47
WP_000149686.1|1800710_1801271_+	cysteine hydrolase	NA	G3MA16	Bacillus_virus	41.2	2.0e-32
WP_001140871.1|1801323_1802253_+	manganese-dependent inorganic pyrophosphatase	NA	NA	NA	NA	NA
WP_001792184.1|1802445_1802619_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001021210.1|1802670_1804050_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_000181315.1|1804169_1805198_-	lactonase family protein	NA	NA	NA	NA	NA
WP_000205106.1|1805467_1805869_+	YolD-like family protein	NA	U3PG23	Staphylococcus_phage	42.9	6.0e-23
WP_000267034.1|1806441_1806615_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001188043.1|1807065_1808106_+	linear amide C-N hydrolase	NA	NA	NA	NA	NA
WP_000713072.1|1808162_1809005_-	DUF4097 family beta strand repeat protein	NA	NA	NA	NA	NA
WP_001033971.1|1809001_1809559_-	DUF1700 domain-containing protein	NA	NA	NA	NA	NA
WP_000966288.1|1809618_1810143_-	membrane protein	NA	NA	NA	NA	NA
WP_000182842.1|1810263_1810827_+	thioredoxin family protein	NA	NA	NA	NA	NA
WP_001221651.1|1810892_1811633_-	phenol-soluble modulin export ABC transporter permease subunit PmtD	NA	NA	NA	NA	NA
WP_000763043.1|1811632_1812505_-	phenol-soluble modulin export ABC transporter ATP-binding protein PmtC	NA	A0A2H4PQG7	Staphylococcus_phage	36.0	1.0e-27
WP_000645727.1|1812501_1813182_-	phenol-soluble modulin export ABC transporter permease subunit PmtB	NA	NA	NA	NA	NA
WP_015445884.1|1813182_1814079_-	phenol-soluble modulin export ABC transporter ATP-binding protein PmtA	NA	A0A2H4PQG7	Staphylococcus_phage	30.2	5.0e-17
WP_000691584.1|1814075_1814456_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000681968.1|1814713_1814890_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000990056.1|1815132_1815231_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001068542.1|1815430_1816717_+	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_000671712.1|1816995_1817286_-	MAP domain-containing protein	NA	NA	NA	NA	NA
WP_001557458.1|1817300_1818731_-	MAP domain-containing protein	NA	NA	NA	NA	NA
WP_000669789.1|1819688_1819868_+	hypothetical protein	NA	A0A1W6JQ29	Staphylococcus_phage	100.0	2.2e-25
WP_001791826.1|1820178_1820439_+	hypothetical protein	NA	M9NS66	Staphylococcus_phage	100.0	2.3e-23
WP_000702263.1|1820491_1820842_-	complement inhibitor SCIN-A	NA	A0A1P8L6B0	Staphylococcus_phage	100.0	7.5e-54
WP_000727649.1|1821525_1821975_+	chemotaxis-inhibiting protein CHIPS	NA	A0A1P8L6A8	Staphylococcus_phage	100.0	1.1e-78
WP_020444758.1|1822069_1822528_-	amidase	NA	R9QTN8	Staphylococcus_phage	98.7	4.9e-85
WP_000919350.1|1823054_1823546_-	staphylokinase	NA	A0A1X9H028	Staphylococcus_phage	100.0	9.5e-87
WP_000861038.1|1823736_1824492_-	CHAP domain-containing protein	NA	D2JLG5	Staphylococcus_phage	100.0	3.4e-152
WP_000611512.1|1824503_1824758_-|holin	phage holin	holin	D2JLG4	Staphylococcus_phage	100.0	4.1e-41
WP_001791821.1|1824809_1824917_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011447039.1|1824969_1825146_-|holin	putative holin-like toxin	holin	D2JLG3	Staphylococcus_phage	98.3	2.2e-22
WP_000539688.1|1825295_1825592_-	DUF2951 domain-containing protein	NA	D2JLG2	Staphylococcus_phage	100.0	2.9e-46
WP_001040261.1|1825649_1825937_-	hypothetical protein	NA	D2JLG1	Staphylococcus_phage	100.0	1.3e-43
WP_001153681.1|1825983_1826136_-	hypothetical protein	NA	D2JLG0	Staphylococcus_phage	100.0	5.2e-20
WP_000582178.1|1826125_1829911_-	hypothetical protein	NA	A0A1P8L6B8	Staphylococcus_phage	99.8	0.0e+00
WP_000567391.1|1829926_1831411_-|tail	phage tail protein	tail	A0A068A242	Staphylococcus_phage	98.8	4.6e-294
WP_000504572.1|1831407_1835919_-|tail	phage tail tape measure protein	tail	A0EX03	Staphylococcus_phage	88.0	0.0e+00
WP_001096355.1|1836163_1836514_-	hypothetical protein	NA	G4KNQ8	Staphylococcus_phage	100.0	7.8e-59
WP_094969686.1|1836564_1836870_-	hypothetical protein	NA	A0A075LYE8	Staphylococcus_phage	93.2	1.5e-29
WP_000985141.1|1836830_1837472_-|tail	phage tail protein	tail	A0A1W6JPP5	Staphylococcus_phage	100.0	1.1e-119
WP_000565498.1|1837472_1837880_-	hypothetical protein	NA	G4KNQ6	Staphylococcus_phage	100.0	7.1e-72
WP_000114341.1|1837876_1838281_-	hypothetical protein	NA	A0A1W6JPJ1	Staphylococcus_phage	100.0	2.5e-69
WP_000755150.1|1838277_1838640_-|head,tail	head-tail adaptor protein	head,tail	G4KNQ4	Staphylococcus_phage	100.0	4.4e-65
WP_000150936.1|1838623_1838908_-|head,tail	phage head-tail adapter protein	head,tail	A0A2I6PDJ5	Staphylococcus_phage	100.0	2.3e-45
WP_000238237.1|1838920_1839181_-	hypothetical protein	NA	A0A0H3U504	Staphylococcus_phage	100.0	6.4e-42
WP_000154564.1|1839200_1840346_-|capsid	phage major capsid protein	capsid	A0A1W6JPL4	Staphylococcus_phage	99.5	2.8e-214
WP_000861911.1|1840368_1841106_-|protease	Clp protease ClpP	protease	A0A1W6JPK0	Staphylococcus_phage	100.0	1.8e-129
WP_000025268.1|1841089_1842253_-|portal	phage portal protein	portal	A0A1W6JPQ9	Staphylococcus_phage	100.0	1.8e-216
WP_000625087.1|1842268_1843930_-|terminase	terminase large subunit	terminase	Q8LTH3	Staphylococcus_phage	100.0	0.0e+00
WP_000402904.1|1843926_1844271_-	hypothetical protein	NA	G4KNP9	Staphylococcus_phage	100.0	9.4e-57
WP_000988336.1|1844401_1844701_-	HNH endonuclease	NA	A0EWY8	Staphylococcus_phage	100.0	4.6e-52
WP_000590122.1|1844932_1845349_-	hypothetical protein	NA	G4KNP7	Staphylococcus_phage	100.0	1.3e-76
WP_001557462.1|1845376_1845577_-	DUF1514 family protein	NA	D2JLD9	Staphylococcus_phage	98.5	5.3e-28
WP_000595265.1|1845576_1845726_-	transcriptional activator RinB	NA	A0A1W6JPZ2	Staphylococcus_phage	100.0	4.8e-18
WP_000195784.1|1845722_1845929_-	DUF1381 domain-containing protein	NA	A0A2I6PEA2	Staphylococcus_phage	94.1	1.1e-17
WP_001282071.1|1845925_1846171_-	hypothetical protein	NA	A0A2I6PDW7	Staphylococcus_phage	97.5	4.2e-35
WP_000185693.1|1846207_1846744_-	hypothetical protein	NA	Q9MBR0	Staphylococcus_prophage	100.0	1.6e-95
WP_001065108.1|1846740_1846986_-	DUF1024 family protein	NA	Q8SDV5	Staphylococcus_phage	95.1	1.7e-36
WP_000178987.1|1847000_1847249_-	hypothetical protein	NA	A0A0K1LL46	Staphylococcus_phage	96.3	7.5e-40
WP_000111491.1|1847245_1847503_-	DUF3310 domain-containing protein	NA	A0A1X9H067	Staphylococcus_phage	98.8	6.3e-42
WP_000101279.1|1847502_1847874_-	hypothetical protein	NA	A0A2I6PDG3	Staphylococcus_phage	91.1	1.4e-50
WP_000401979.1|1847886_1848291_-	RusA family crossover junction endodeoxyribonuclease	NA	A0A075M042	Staphylococcus_phage	99.3	9.3e-72
WP_000338528.1|1848299_1848518_-	hypothetical protein	NA	A0A1P8L6E4	Staphylococcus_phage	100.0	1.4e-37
WP_000148333.1|1848524_1849418_-	DnaD domain-containing protein	NA	A0A1P8L6F0	Staphylococcus_phage	100.0	3.2e-141
WP_000934759.1|1849447_1849918_-	single-stranded DNA-binding protein	NA	A0A1P8L6D9	Staphylococcus_phage	100.0	5.7e-81
WP_078065370.1|1849918_1850536_-	MBL fold metallo-hydrolase	NA	S4SWA4	Staphylococcus_phage	99.4	1.2e-86
WP_000138478.1|1850616_1851537_-	recombinase	NA	A0A2I6PDH5	Staphylococcus_phage	99.7	8.6e-166
WP_000700555.1|1851538_1853482_-	AAA family ATPase	NA	S4V9K6	Staphylococcus_phage	100.0	0.0e+00
WP_001205732.1|1853490_1853754_-	hypothetical protein	NA	A0A2I6PDG2	Staphylococcus_phage	100.0	7.7e-43
WP_000291510.1|1853762_1854023_-	DUF1108 family protein	NA	A0A1P8L6F5	Staphylococcus_phage	100.0	5.2e-44
WP_000165371.1|1854027_1854330_-	DUF2482 family protein	NA	A0A1P8L6F8	Staphylococcus_phage	100.0	7.0e-48
WP_000048129.1|1854424_1854586_-	DUF1270 family protein	NA	A0A1P8L6G0	Staphylococcus_phage	100.0	1.9e-20
WP_001120201.1|1854582_1854906_-	DUF771 domain-containing protein	NA	A0A075LYF5	Staphylococcus_phage	100.0	3.0e-57
WP_000762521.1|1854960_1855341_+	DUF2513 domain-containing protein	NA	Q9T1Z5	Staphylococcus_phage	100.0	1.2e-68
WP_001148856.1|1855327_1855525_-	hypothetical protein	NA	O80075	Staphylococcus_phage	100.0	2.5e-30
WP_001148587.1|1855540_1856290_-	antirepressor	NA	A0A1W6JPN2	Staphylococcus_phage	99.6	2.0e-136
WP_000772137.1|1856346_1856556_+	hypothetical protein	NA	A0A2I6PDR8	Staphylococcus_phage	100.0	9.1e-31
WP_000939495.1|1856548_1856689_-	hypothetical protein	NA	A0A2I6PDT8	Staphylococcus_phage	100.0	1.9e-16
WP_000435349.1|1856703_1857150_-	hypothetical protein	NA	A0A1W6JPI3	Staphylococcus_phage	100.0	1.9e-78
WP_000639923.1|1857162_1857405_-	DUF739 family protein	NA	A0A1X9H035	Staphylococcus_phage	100.0	1.6e-39
WP_001083975.1|1857568_1858285_+	helix-turn-helix domain-containing protein	NA	A0A1X9H038	Staphylococcus_phage	100.0	5.4e-131
WP_001557601.1|1858296_1859151_+	restriction endonuclease	NA	A0A1X9H037	Staphylococcus_phage	100.0	7.3e-151
WP_000109189.1|1859367_1859553_+	hypothetical protein	NA	U5U7D6	Staphylococcus_phage	100.0	2.3e-25
WP_000705241.1|1859622_1859790_+	hypothetical protein	NA	U5U774	Staphylococcus_phage	100.0	1.7e-24
WP_000440838.1|1859929_1860634_+	type II toxin-antitoxin system PemK/MazF family toxin	NA	U5U4R0	Staphylococcus_phage	100.0	4.6e-127
WP_000857198.1|1860827_1861865_+|integrase	site-specific integrase	integrase	A0A1X9H022	Staphylococcus_phage	100.0	2.6e-179
WP_000595392.1|1862983_1864000_-	bi-component leukocidin LukGH subunit G	NA	A0A1X9IGW5	Staphylococcus_phage	30.2	6.7e-26
WP_000791411.1|1864021_1865077_-	bi-component leukocidin LukGH subunit H	NA	A0A1X9IGW5	Staphylococcus_phage	34.3	2.8e-35
WP_000195429.1|1865333_1866506_-|transposase	IS256-like element IS256 family transposase	transposase	A0A0N9STL0	Staphylococcus_phage	100.0	3.5e-135
WP_000206625.1|1866844_1868068_+	ArgE/DapE family deacylase	NA	NA	NA	NA	NA
WP_001045079.1|1868511_1869819_+	TrkH family potassium uptake protein	NA	NA	NA	NA	NA
WP_001557163.1|1869896_1871216_-|transposase	ISL3-like element IS1181 family transposase	transposase	NA	NA	NA	NA
WP_000240642.1|1871878_1873495_-	chaperonin GroEL	NA	A0A240F779	uncultured_virus	54.7	3.4e-157
WP_000917289.1|1873570_1873855_-	co-chaperone GroES	NA	A0A221S386	uncultured_virus	46.2	4.7e-14
WP_000197635.1|1874029_1874773_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
1877008:1877032	attR	ACCCCAACTTGCATTGTCTGTAGAA	NA	NA	NA	NA
>prophage 7
NZ_CP022904	Staphylococcus aureus strain 629 chromosome, complete genome	2913334	1983018	1999980	2913334	coat,terminase,transposase,integrase	Staphylococcus_phage(81.25%)	24	1991196:1991211	1998594:1998609
WP_000195429.1|1983018_1984191_-|transposase	IS256-like element IS256 family transposase	transposase	A0A0N9STL0	Staphylococcus_phage	100.0	3.5e-135
WP_000146510.1|1984932_1985373_-	preprotein translocase subunit SecB	NA	NA	NA	NA	NA
WP_000523349.1|1985372_1985669_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000337708.1|1985689_1986262_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001293074.1|1986476_1987046_-|terminase	terminase small subunit	terminase	Q4ZE85	Staphylococcus_phage	98.4	3.5e-101
WP_000358778.1|1987042_1987384_-	hypothetical protein	NA	A0A1W6JQM3	Staphylococcus_phage	100.0	1.7e-58
WP_000771370.1|1987386_1987914_-|coat	spore coat protein	coat	A0A1W6JQH7	Staphylococcus_phage	96.6	1.7e-86
WP_000448770.1|1987964_1988183_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000846280.1|1988200_1988779_-	hypothetical protein	NA	A0A2H4JBG0	uncultured_Caudovirales_phage	38.9	4.8e-29
WP_001190606.1|1988790_1989132_-	hypothetical protein	NA	Q4ZE66	Staphylococcus_phage	98.2	4.2e-57
WP_001019773.1|1989581_1990223_-	hypothetical protein	NA	Q4ZE67	Staphylococcus_phage	92.5	2.1e-110
WP_001149387.1|1990224_1990497_-	hypothetical protein	NA	Q4ZE68	Staphylococcus_phage	100.0	3.2e-44
WP_000148368.1|1990483_1991287_-	DNA primase	NA	Q4ZE69	Staphylococcus_phage	97.0	3.1e-151
1991196:1991211	attL	GCAAATGAAACAGTTG	NA	NA	NA	NA
WP_115276802.1|1991462_1993079_-	phage resistance protein	NA	A0A1W6JPF4	Staphylococcus_phage	78.1	3.0e-246
WP_001103972.1|1993123_1993447_-	DUF1474 family protein	NA	A0A1W6JQH0	Staphylococcus_phage	93.3	2.6e-40
WP_000403833.1|1993447_1993831_-	hypothetical protein	NA	A0A1W6JQI7	Staphylococcus_phage	96.9	3.3e-63
WP_001231376.1|1993832_1994036_-	hypothetical protein	NA	A0A1W6JQF4	Staphylococcus_phage	98.5	2.0e-30
WP_000784892.1|1994002_1994176_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000164237.1|1994172_1994400_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_001060953.1|1994435_1994642_-	hypothetical protein	NA	NA	NA	NA	NA
WP_072474260.1|1994799_1995447_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_000121223.1|1995452_1996559_+|integrase	site-specific integrase	integrase	H0UST3	Bacillus_phage	44.2	5.9e-76
WP_001085183.1|1997121_1997586_-	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	98.7	1.6e-80
WP_001050048.1|1997607_1999980_-	ribonuclease R	NA	Q0GXV6	Lactococcus_phage	38.8	4.3e-92
1998594:1998609	attR	CAACTGTTTCATTTGC	NA	NA	NA	NA
>prophage 8
NZ_CP022904	Staphylococcus aureus strain 629 chromosome, complete genome	2913334	2050832	2064495	2913334	transposase	uncultured_Caudovirales_phage(50.0%)	13	NA	NA
WP_000616840.1|2050832_2051594_-	ABC transporter ATP-binding protein	NA	Q9EMR9	Amsacta_moorei_entomopoxvirus	31.6	6.5e-18
WP_001245577.1|2051590_2052547_-	iron chelate uptake ABC transporter family permease subunit	NA	A0A2H4J116	uncultured_Caudovirales_phage	57.8	1.2e-05
WP_000876318.1|2052533_2053505_-	ABC transporter permease	NA	A0A2H4IY97	uncultured_Caudovirales_phage	78.9	4.3e-139
WP_000499195.1|2053543_2053699_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000562498.1|2053879_2054851_-	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	A0A2H4J4P3	uncultured_Caudovirales_phage	91.3	4.2e-171
WP_000855514.1|2054968_2057074_-	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A0A2H4J2N6	uncultured_Caudovirales_phage	91.7	0.0e+00
WP_000692521.1|2057036_2057435_-	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	A0A2H4J545	uncultured_Caudovirales_phage	72.0	1.2e-52
WP_001068501.1|2058235_2059102_+	DMT family transporter	NA	NA	NA	NA	NA
WP_000930014.1|2059121_2059622_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	E7DN65	Pneumococcus_phage	71.5	5.9e-52
WP_000193751.1|2059962_2061468_+	peptide MFS transporter	NA	A0A0P0IY73	Acinetobacter_phage	32.2	2.0e-58
WP_000284571.1|2061594_2063199_-|transposase	IS1182-like element IS1182 family transposase	transposase	A0ZS58	Staphylococcus_virus	44.4	1.1e-128
WP_031760357.1|2063385_2063487_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000429006.1|2063577_2064495_+	diacylglycerol kinase family lipid kinase	NA	A0A1V0SBJ0	Catovirus	22.0	2.1e-07
>prophage 9
NZ_CP022904	Staphylococcus aureus strain 629 chromosome, complete genome	2913334	2079284	2087105	2913334		Pandoravirus(16.67%)	10	NA	NA
WP_001217796.1|2079284_2080436_-	anthranilate synthase component I family protein	NA	S4VNU7	Pandoravirus	35.7	6.0e-23
WP_000604514.1|2080419_2081013_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	42.9	4.4e-38
WP_000446724.1|2081363_2082032_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	57.5	9.6e-66
WP_000941336.1|2082033_2082453_+	6-carboxytetrahydropterin synthase QueD	NA	S4U060	uncultured_phage	28.7	6.3e-07
WP_001062972.1|2082456_2083170_+	7-carboxy-7-deazaguanine synthase QueE	NA	A0A1U9WRB6	Streptococcus_virus	43.5	6.5e-52
WP_000604990.1|2083268_2083853_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001093562.1|2084132_2084573_+	DM13 domain-containing protein	NA	NA	NA	NA	NA
WP_001037807.1|2084915_2085389_+	DoxX family protein	NA	NA	NA	NA	NA
WP_000149344.1|2085363_2086050_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_000244415.1|2086049_2087105_+	HAMP domain-containing histidine kinase	NA	A0A1V0SGX0	Hokovirus	29.8	3.6e-14
>prophage 10
NZ_CP022904	Staphylococcus aureus strain 629 chromosome, complete genome	2913334	2391173	2454134	2913334	coat,terminase,transposase,integrase	Staphylococcus_phage(70.0%)	71	2436311:2436328	2452582:2452599
WP_000195429.1|2391173_2392346_-|transposase	IS256-like element IS256 family transposase	transposase	A0A0N9STL0	Staphylococcus_phage	100.0	3.5e-135
WP_000769160.1|2393023_2393707_+	superantigen-like protein SSL11	NA	NA	NA	NA	NA
WP_001208917.1|2393728_2395216_+	FKLRK protein	NA	NA	NA	NA	NA
WP_000669519.1|2395324_2395633_-	myeloperoxidase inhibitor SPIN	NA	NA	NA	NA	NA
WP_000195429.1|2396013_2397186_+|transposase	IS256-like element IS256 family transposase	transposase	A0A0N9STL0	Staphylococcus_phage	100.0	3.5e-135
WP_115276807.1|2397212_2398274_-	restriction endonuclease subunit S	NA	A0A2H4PQP5	Staphylococcus_phage	94.3	5.9e-126
WP_001576237.1|2398266_2399823_-	type I restriction-modification system subunit M	NA	A0A2H4PQP4	Staphylococcus_phage	99.8	3.6e-289
WP_031762269.1|2399900_2400002_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000673051.1|2400086_2400770_-	superantigen-like protein SSL10	NA	NA	NA	NA	NA
WP_000778500.1|2401135_2401834_-	superantigen-like protein SSL9	NA	NA	NA	NA	NA
WP_000673034.1|2402210_2402909_-	superantigen-like protein SSL8	NA	NA	NA	NA	NA
WP_000769820.1|2403247_2403943_-	superantigen-like protein SSL7	NA	NA	NA	NA	NA
WP_000781349.1|2404388_2405093_-	superantigen-like protein SSL5	NA	NA	NA	NA	NA
WP_000705657.1|2405456_2406335_-	superantigen-like protein SSL4	NA	NA	NA	NA	NA
WP_001792090.1|2406443_2406581_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001056483.1|2406698_2407769_-	superantigen-like protein SSL3	NA	NA	NA	NA	NA
WP_000669014.1|2409040_2409721_-	superantigen-like protein SSL1	NA	NA	NA	NA	NA
WP_001021623.1|2411056_2411416_+	DUF1304 domain-containing protein	NA	NA	NA	NA	NA
WP_000248844.1|2411947_2412100_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000159787.1|2412360_2412633_+|transposase	transposase	transposase	A0A0C5AJ30	Paenibacillus_phage	50.6	1.3e-13
WP_000041880.1|2413031_2413736_+	type II toxin-antitoxin system PemK/MazF family toxin	NA	U5U4R0	Staphylococcus_phage	37.1	5.8e-29
WP_000551643.1|2414127_2414664_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000424963.1|2414776_2416318_-	glutamine-hydrolyzing GMP synthase	NA	A0A1V0SH76	Hokovirus	32.6	1.2e-23
WP_000264071.1|2416342_2417809_-	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	40.5	5.2e-96
WP_000793023.1|2417846_2419115_-	purine permease	NA	NA	NA	NA	NA
WP_000421410.1|2419114_2419693_-	xanthine phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_000763767.1|2420205_2420613_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000394698.1|2420755_2421418_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000956137.1|2421535_2422492_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001792089.1|2423286_2423385_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000991018.1|2423469_2424858_+	L-cystine transporter	NA	NA	NA	NA	NA
WP_001287099.1|2424937_2425693_-	NADPH-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_000052781.1|2426184_2426754_+	peroxiredoxin	NA	NA	NA	NA	NA
WP_000930514.1|2426769_2428293_+	alkyl hydroperoxide reductase subunit F	NA	A0A249XZT7	Enterococcus_phage	33.6	1.4e-40
WP_000746679.1|2428736_2429363_+	NDxxF motif lipoprotein	NA	NA	NA	NA	NA
WP_000868256.1|2429632_2430016_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000158375.1|2430081_2430663_-	histidine phosphatase family protein	NA	NA	NA	NA	NA
WP_000211677.1|2430840_2431050_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000466748.1|2431088_2431340_-	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_001055897.1|2431639_2431903_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_000769722.1|2432039_2432612_-	PepSY domain-containing protein	NA	NA	NA	NA	NA
WP_000849163.1|2432792_2433161_-	YxeA family protein	NA	NA	NA	NA	NA
WP_000475325.1|2433529_2434141_-	toxin	NA	NA	NA	NA	NA
WP_001817700.1|2435098_2436037_+	Abi family protein	NA	NA	NA	NA	NA
2436311:2436328	attL	ATATTATTGTTCTTCTTT	NA	NA	NA	NA
WP_000195429.1|2436880_2438053_-|transposase	IS256-like element IS256 family transposase	transposase	A0A0N9STL0	Staphylococcus_phage	100.0	3.5e-135
WP_000813311.1|2438366_2438879_-	hypothetical protein	NA	Q4ZE83	Staphylococcus_phage	100.0	1.4e-69
WP_073392942.1|2438996_2439434_-	DUF3102 domain-containing protein	NA	A0A2H4JAH5	uncultured_Caudovirales_phage	58.2	9.8e-27
WP_000801980.1|2439575_2440544_-	Abi family protein	NA	A0A0H4U080	Erysipelothrix_phage	27.3	2.7e-24
WP_001293071.1|2440820_2441390_-|terminase	terminase small subunit	terminase	Q4ZE85	Staphylococcus_phage	98.4	4.6e-101
WP_001656917.1|2441386_2441599_-	hypothetical protein	NA	Q4ZE86	Staphylococcus_phage	97.1	5.4e-31
WP_031870369.1|2441730_2442258_-|coat	spore coat protein	coat	Q4ZE87	Staphylococcus_phage	99.4	2.0e-90
WP_000214170.1|2442310_2442964_-	hypothetical protein	NA	Q4ZE82	Staphylococcus_phage	99.5	7.6e-116
WP_001288442.1|2442994_2443339_-	hypothetical protein	NA	Q4ZE66	Staphylococcus_phage	91.7	1.3e-50
WP_031870361.1|2444046_2444688_-	pathogenicity island protein	NA	Q4ZE67	Staphylococcus_phage	93.4	2.5e-111
WP_001003076.1|2444689_2444953_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001059599.1|2444954_2445311_-	hypothetical protein	NA	A0A2H4JBD4	uncultured_Caudovirales_phage	78.8	3.0e-50
WP_000151864.1|2445553_2446924_-	DNA primase	NA	A0A2H4JBE3	uncultured_Caudovirales_phage	95.0	2.4e-257
WP_031870360.1|2446935_2447805_-	mobile element-associated protein	NA	A0A2H4JEH3	uncultured_Caudovirales_phage	76.1	1.0e-131
WP_001103967.1|2447869_2448196_-	DUF1474 family protein	NA	Q4ZE75	Staphylococcus_phage	96.3	3.5e-53
WP_000403837.1|2448196_2448580_-	hypothetical protein	NA	A0A1W6JQI7	Staphylococcus_phage	96.1	4.8e-62
WP_001231376.1|2448581_2448785_-	hypothetical protein	NA	A0A1W6JQF4	Staphylococcus_phage	98.5	2.0e-30
WP_000784892.1|2448751_2448925_-	hypothetical protein	NA	NA	NA	NA	NA
WP_031870322.1|2448936_2449209_-	winged helix-turn-helix domain-containing protein	NA	Q4ZE77	Staphylococcus_phage	97.8	5.0e-45
WP_001611932.1|2449209_2449374_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_000230361.1|2449522_2450146_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_000270135.1|2450306_2451521_+|integrase	site-specific integrase	integrase	Q4ZE80	Staphylococcus_phage	97.3	3.3e-221
WP_000400841.1|2451633_2452353_+	type II toxin-antitoxin system PemK/MazF family toxin	NA	Q4ZE81	Staphylococcus_phage	29.8	3.7e-23
WP_000897044.1|2452584_2452827_-	30S ribosomal protein S18	NA	NA	NA	NA	NA
2452582:2452599	attR	ATATTATTGTTCTTCTTT	NA	NA	NA	NA
WP_000934799.1|2452878_2453382_-	single-stranded DNA-binding protein	NA	A0A1W6JPL9	Staphylococcus_phage	74.7	1.2e-60
WP_001261460.1|2453402_2453699_-	30S ribosomal protein S6	NA	NA	NA	NA	NA
WP_001052484.1|2453942_2454134_+	hypothetical protein	NA	U3PCX8	Staphylococcus_phage	80.0	1.1e-22
>prophage 11
NZ_CP022904	Staphylococcus aureus strain 629 chromosome, complete genome	2913334	2633225	2641841	2913334	transposase	Staphylococcus_phage(66.67%)	8	NA	NA
WP_000067352.1|2633225_2634818_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	4.1e-22
WP_000195429.1|2635139_2636312_-|transposase	IS256-like element IS256 family transposase	transposase	A0A0N9STL0	Staphylococcus_phage	100.0	3.5e-135
WP_000794565.1|2636659_2636857_-	helix-turn-helix transcriptional regulator	NA	A0A1V0E021	Clostridioides_phage	43.3	2.1e-05
WP_000960712.1|2637022_2637745_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	34.8	4.1e-22
WP_001793228.1|2637756_2638221_-	membrane protein	NA	NA	NA	NA	NA
WP_001814906.1|2638258_2639200_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000195429.1|2639338_2640511_+|transposase	IS256-like element IS256 family transposase	transposase	A0A0N9STL0	Staphylococcus_phage	100.0	3.5e-135
WP_000195429.1|2640668_2641841_+|transposase	IS256-like element IS256 family transposase	transposase	A0A0N9STL0	Staphylococcus_phage	100.0	3.5e-135
>prophage 12
NZ_CP022904	Staphylococcus aureus strain 629 chromosome, complete genome	2913334	2747126	2776275	2913334	transposase,integrase	Streptococcus_phage(69.23%)	29	2769078:2769097	2776537:2776556
WP_031870354.1|2747126_2748569_-|integrase,transposase	DDE-type integrase/transposase/recombinase	integrase,transposase	NA	NA	NA	NA
WP_000690628.1|2748540_2749134_-	recombinase family protein	NA	A0A0A7NPV4	Enterobacteria_phage	51.1	1.1e-41
WP_001124173.1|2749339_2749921_+	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000284571.1|2750204_2751809_+|transposase	IS1182-like element IS1182 family transposase	transposase	A0ZS58	Staphylococcus_virus	44.4	1.1e-128
WP_000567888.1|2751935_2752181_+	single-stranded DNA-binding protein	NA	NA	NA	NA	NA
WP_000228166.1|2752283_2753153_+	hypothetical protein	NA	A0A1X9I6C9	Streptococcus_phage	95.8	4.3e-159
WP_000662263.1|2753133_2753868_+	class I SAM-dependent methyltransferase	NA	A0A1X9I6N4	Streptococcus_phage	100.0	1.5e-141
WP_001255866.1|2753900_2754809_+	aminoglycoside nucleotidyltransferase ANT(6)-Ia	NA	E4ZFP8	Streptococcus_phage	100.0	2.8e-177
WP_000627290.1|2754805_2755348_+	streptothricin N-acetyltransferase Sat4	NA	A0A1B0RXL7	Streptococcus_phage	100.0	8.9e-94
WP_001096887.1|2755440_2756235_+	aminoglycoside O-phosphotransferase APH(3')-IIIa	NA	E4ZFP6	Streptococcus_phage	100.0	2.3e-154
WP_001079938.1|2756510_2757083_+	HTH domain-containing protein	NA	A0A1B0RXM1	Streptococcus_phage	99.5	5.5e-102
WP_072387101.1|2757055_2757463_+	WYL domain-containing protein	NA	A0A1B0RXM3	Streptococcus_phage	98.3	1.1e-59
WP_000802831.1|2757573_2758233_+	RibD family protein	NA	A0A1B0RXM8	Streptococcus_phage	100.0	3.1e-125
WP_001835223.1|2758200_2758398_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000284571.1|2758953_2760558_-|transposase	IS1182-like element IS1182 family transposase	transposase	A0ZS58	Staphylococcus_virus	44.4	1.1e-128
WP_001005523.1|2761605_2762472_-	fructosamine kinase family protein	NA	NA	NA	NA	NA
WP_000277419.1|2762689_2763754_+	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA	NA
WP_000159839.1|2763908_2764184_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000606210.1|2764369_2765092_-	epoxyqueuosine reductase QueH	NA	NA	NA	NA	NA
WP_000125705.1|2765445_2765895_+	glyoxalase/bleomycin resistance/extradiol dioxygenase family protein	NA	NA	NA	NA	NA
WP_000151110.1|2765975_2766563_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_001071595.1|2766705_2768388_+	CocE/NonD family hydrolase	NA	NA	NA	NA	NA
WP_000755982.1|2768485_2769121_-	LPXTG cell wall anchor domain-containing protein	NA	NA	NA	NA	NA
2769078:2769097	attL	AACACTGATAAAATTGCAAC	NA	NA	NA	NA
WP_001092058.1|2769955_2770618_-	methyltransferase domain-containing protein	NA	NA	NA	NA	NA
WP_001072201.1|2771126_2771858_+	23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(A)	NA	E4ZFQ0	Streptococcus_phage	47.5	1.9e-51
WP_000067268.1|2771983_2772766_-	aminoglycoside nucleotidyltransferase ANT(9)-Ia	NA	NA	NA	NA	NA
WP_000361059.1|2772916_2773294_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_001557544.1|2773300_2775193_-|integrase	tyrosine-type recombinase/integrase	integrase	NA	NA	NA	NA
WP_000868132.1|2775189_2776275_-|integrase	tyrosine-type recombinase/integrase	integrase	A0A0A8WIF9	Clostridium_phage	28.3	4.5e-12
2776537:2776556	attR	AACACTGATAAAATTGCAAC	NA	NA	NA	NA
