assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_003354565.1_ASM335456v1	NZ_CP022903	Staphylococcus aureus strain 187 chromosome, complete genome	1	170126-170210	1	CRISPRCasFinder	no		WYL,RT,csa3,cas3,DEDDh,DinG	Orphan	TTCTACAGGCAATGCAAGTTGGGGTG	26	1	3	170152-170184|170152-170184|170152-170184	NZ_CP022903.1_1157487-1157519|NZ_CP022903.1_1245841-1245809|NZ_CP022903.1_2016848-2016880	NA	1	1	Orphan	WYL,RT,csa3,cas3,DEDDh,DinG	NA|402aa|up_9|NZ_CP022903.1_159271_160477_+,NA|68aa|down_0|NZ_CP022903.1_170271_170475_-	NA|402aa|up_9|NZ_CP022903.1_159271_160477_+	NA	NA|402aa|up_8|NZ_CP022903.1_160477_161683_+	cd03794, GT4_WbuB-like, Escherichia coli WbuB and similar proteins	NA|186aa|up_7|NZ_CP022903.1_161693_162251_+	COG2148, WcaJ, Sugar transferases involved in lipopolysaccharide synthesis [Cell envelope biogenesis, outer membrane]	NA|296aa|up_6|NZ_CP022903.1_162250_163138_+	cd05232, UDP_G4E_4_SDR_e, UDP-glucose 4 epimerase, subgroup 4, extended (e) SDRs	NA|421aa|up_5|NZ_CP022903.1_163191_164454_+	COG0677, WecC, UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]	NA|382aa|up_4|NZ_CP022903.1_164530_165676_+	COG0381, WecB, UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]	NA|109aa|up_3|NZ_CP022903.1_165740_166067_-	PRK13313, PRK13313, staphylobilin-forming heme oxygenase IsdI	NA|128aa|up_2|NZ_CP022903.1_166073_166457_-	pfam04304, DUF454, Protein of unknown function (DUF454)	NA|496aa|up_1|NZ_CP022903.1_166883_168371_+	cd07117, ALDH_StaphAldA1, Uncharacterized Staphylococcus aureus AldA1 (SACOL0154) aldehyde dehydrogenase-like	NA|320aa|up_0|NZ_CP022903.1_169017_169977_+	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	NA|68aa|down_0|NZ_CP022903.1_170271_170475_-	NA	NA|171aa|down_1|NZ_CP022903.1_170653_171166_+	pfam14026, DUF4242, Protein of unknown function (DUF4242)	NA|247aa|down_2|NZ_CP022903.1_171507_172248_+	COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]	NA|324aa|down_3|NZ_CP022903.1_172261_173233_+	cd13553, PBP2_NrtA_CpmA_like, Substrate binding domain of ABC-type nitrate/bicarbonate transporters, a member of the type 2 periplasmic binding fold superfamily	NA|254aa|down_4|NZ_CP022903.1_173229_173991_+	COG0600, TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism]	NA|344aa|down_5|NZ_CP022903.1_174003_175035_+	COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid metabolism]	NA|120aa|down_6|NZ_CP022903.1_175251_175611_+	COG5609, COG5609, Uncharacterized conserved protein [Function unknown]	NA|342aa|down_7|NZ_CP022903.1_175784_176810_+	PRK07574, PRK07574, NAD-dependent formate dehydrogenase	NA|417aa|down_8|NZ_CP022903.1_177195_178446_+	cd17329, MFS_MdtH_MDR_like, Multidrug resistance protein MdtH and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily	NA|2392aa|down_9|NZ_CP022903.1_178892_186068_+	PRK12467, PRK12467, peptide synthase; Provisional
GCF_003354565.1_ASM335456v1	NZ_CP022903	Staphylococcus aureus strain 187 chromosome, complete genome	2	273781-273859	2	CRISPRCasFinder	no		WYL,RT,csa3,cas3,DEDDh,DinG	Orphan	TGCAAGTTGGCGGGGCCCCAACA	23	1	3	273804-273836|273804-273836|273804-273836	NZ_CP022903.1_1954785-1954817|NZ_CP022903.1_1893825-1893857|NZ_CP022903.1_2009661-2009693	NA	1	1	Orphan	WYL,RT,csa3,cas3,DEDDh,DinG	NA|220aa|up_3|NZ_CP022903.1_270705_271365_-,NA|36aa|up_0|NZ_CP022903.1_273354_273462_+,NA	NA|693aa|up_9|NZ_CP022903.1_263167_265246_-	COG0025, NhaP, NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]	NA|470aa|up_8|NZ_CP022903.1_265383_266793_-	COG1113, AnsP, Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]	NA|269aa|up_7|NZ_CP022903.1_267078_267885_+	TIGR03729, acc_ester, putative phosphoesterase	NA|219aa|up_6|NZ_CP022903.1_267947_268604_-	COG4990, COG4990, Uncharacterized protein conserved in bacteria [Function unknown]	NA|158aa|up_5|NZ_CP022903.1_268716_269190_+	COG3708, COG3708, Uncharacterized protein conserved in bacteria [Function unknown]	NA|404aa|up_4|NZ_CP022903.1_269312_270524_-	cd17320, MFS_MdfA_MDR_like, Multidrug transporter MdfA and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily	NA|220aa|up_3|NZ_CP022903.1_270705_271365_-	NA	NA|381aa|up_2|NZ_CP022903.1_271424_272567_-	TIGR00045, Glycerate_kinase, glycerate kinase	NA|129aa|up_1|NZ_CP022903.1_272834_273221_+	COG2246, COG2246, Predicted membrane protein [Function unknown]	NA|36aa|up_0|NZ_CP022903.1_273354_273462_+	NA	NA|588aa|down_0|NZ_CP022903.1_274164_275928_+	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|578aa|down_1|NZ_CP022903.1_275952_277686_+	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|229aa|down_2|NZ_CP022903.1_278138_278825_+	COG0132, BioD, Dethiobiotin synthetase [Coenzyme metabolism]	NA|453aa|down_3|NZ_CP022903.1_278802_280161_+	TIGR00508, hypothetical_protein_DESPIG_00326, adenosylmethionine-8-amino-7-oxononanoate transaminase	NA|336aa|down_4|NZ_CP022903.1_280162_281170_+	PRK06256, PRK06256, biotin synthase; Validated	NA|372aa|down_5|NZ_CP022903.1_281147_282263_+	COG0156, BioF, 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism]	NA|231aa|down_6|NZ_CP022903.1_282273_282966_+	COG1424, BioW, Pimeloyl-CoA synthetase [Coenzyme metabolism]	NA|156aa|down_7|NZ_CP022903.1_282976_283444_+	pfam06177, QueT, QueT transporter	NA|326aa|down_8|NZ_CP022903.1_283495_284473_-	TIGR01002, synergohymenotropic_toxin, beta-channel forming cytolysin	NA|316aa|down_9|NZ_CP022903.1_284474_285422_-	pfam07968, Leukocidin, Leukocidin/Hemolysin toxin family
GCF_003354565.1_ASM335456v1	NZ_CP022903	Staphylococcus aureus strain 187 chromosome, complete genome	3	438527-438607	3	CRISPRCasFinder	no		WYL,RT,csa3,cas3,DEDDh,DinG	Orphan	CAAGTTGGCGGGGCCCCAACACAGA	25	1	11	438552-438582|438552-438582|438552-438582|438552-438582|438552-438582|438552-438582|438552-438582|438552-438582|438552-438582|438552-438582|438552-438582	NZ_CP022903.1_2009665-2009695|NZ_CP022903.1_70374-70344|NZ_CP022903.1_449353-449383|NZ_CP022903.1_951403-951433|NZ_CP022903.1_1157445-1157475|NZ_CP022903.1_1245883-1245853|NZ_CP022903.1_1446152-1446182|NZ_CP022903.1_1764683-1764653|NZ_CP022903.1_1954789-1954819|NZ_CP022903.1_2191882-2191852|NZ_CP022903.1_2477624-2477594	NA	1	1	Orphan	WYL,RT,csa3,cas3,DEDDh,DinG	NA,NA|62aa|down_0|NZ_CP022903.1_438648_438834_-,NA|84aa|down_5|NZ_CP022903.1_441973_442225_-,NA|106aa|down_8|NZ_CP022903.1_447346_447664_-,NA|55aa|down_9|NZ_CP022903.1_447908_448073_-	NA|202aa|up_9|NZ_CP022903.1_431419_432025_+	COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]	NA|335aa|up_8|NZ_CP022903.1_432194_433199_+	PRK07688, PRK07688, thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated	NA|169aa|up_7|NZ_CP022903.1_433229_433736_+	COG0521, MoaB, Molybdopterin biosynthesis enzymes [Coenzyme metabolism]	NA|165aa|up_6|NZ_CP022903.1_433737_434232_-	PRK09364, moaC, cyclic pyranopterin monophosphate synthase MoaC	NA|420aa|up_5|NZ_CP022903.1_434294_435554_+	cd00887, MoeA, MoeA family	NA|162aa|up_4|NZ_CP022903.1_435550_436036_+	COG1763, MobB, Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]	NA|149aa|up_3|NZ_CP022903.1_436049_436496_+	COG0314, MoaE, Molybdopterin converting factor, large subunit [Coenzyme metabolism]	NA|78aa|up_2|NZ_CP022903.1_436501_436735_+	cd00754, Ubl_MoaD, ubiquitin-like (Ubl) domain found in molybdenum cofactor biosynthesis protein D (MoaD) and similar proteins	NA|200aa|up_1|NZ_CP022903.1_436741_437341_+	PRK00317, mobA, molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed	NA|341aa|up_0|NZ_CP022903.1_437360_438383_+	TIGR02666, Cyclic_pyranopterin_monophosphate_synthase, molybdenum cofactor biosynthesis protein A, bacterial	NA|62aa|down_0|NZ_CP022903.1_438648_438834_-	NA	NA|117aa|down_1|NZ_CP022903.1_438959_439310_+	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|404aa|down_2|NZ_CP022903.1_439411_440623_-	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily	NA|147aa|down_3|NZ_CP022903.1_440615_441056_-	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|255aa|down_4|NZ_CP022903.1_441217_441982_+	pfam13468, Glyoxalase_3, Glyoxalase-like domain	NA|84aa|down_5|NZ_CP022903.1_441973_442225_-	NA	NA|422aa|down_6|NZ_CP022903.1_442613_443879_+	COG2348, COG2348, Peptidoglycan interpeptide bridge formation enzyme [Cell wall/membrane/envelope biogenesis]	NA|1056aa|down_7|NZ_CP022903.1_443995_447163_+	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms]	NA|106aa|down_8|NZ_CP022903.1_447346_447664_-	NA	NA|55aa|down_9|NZ_CP022903.1_447908_448073_-	NA
GCF_003354565.1_ASM335456v1	NZ_CP022903	Staphylococcus aureus strain 187 chromosome, complete genome	4	546565-546650	4	CRISPRCasFinder	no	csa3	WYL,RT,csa3,cas3,DEDDh,DinG	Type I-A	ACTAATGATACGCAAAAATCAGTTGG	26	0	0	NA	NA	NA	1	1	Orphan	WYL,RT,csa3,cas3,DEDDh,DinG	NA,NA|53aa|down_7|NZ_CP022903.1_557612_557771_-,NA|35aa|down_8|NZ_CP022903.1_558450_558555_+,NA|364aa|down_9|NZ_CP022903.1_558987_560079_-	NA|172aa|up_9|NZ_CP022903.1_521249_521765_+	COG1988, COG1988, Predicted membrane-bound metal-dependent hydrolases [General function prediction only]	NA|396aa|up_8|NZ_CP022903.1_521808_522996_+	cd04193, UDPGlcNAc_PPase, UDPGlcNAc pyrophosphorylase catalayzes the synthesis of UDPGlcNAc	NA|228aa|up_7|NZ_CP022903.1_523014_523698_+	COG1272, COG1272, Predicted membrane protein, hemolysin III homolog [General function prediction only]	NA|448aa|up_6|NZ_CP022903.1_523874_525218_+	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|158aa|up_5|NZ_CP022903.1_525316_525790_+	pfam17080, SepA, Multidrug Resistance efflux pump	NA|355aa|up_4|NZ_CP022903.1_527703_528768_+	pfam10609, ParA, NUBPL iron-transfer P-loop NTPase	NA|303aa|up_3|NZ_CP022903.1_535008_535917_+	cd09989, Arginase, Arginase family	NA|270aa|up_2|NZ_CP022903.1_536105_536915_+	COG1624, COG1624, Uncharacterized conserved protein [Function unknown]	NA|311aa|up_1|NZ_CP022903.1_536916_537849_+	COG4856, COG4856, Uncharacterized protein conserved in bacteria [Function unknown]	NA|452aa|up_0|NZ_CP022903.1_537875_539231_+	PRK14316, glmM, phosphoglucosamine mutase; Provisional	NA|369aa|down_0|NZ_CP022903.1_547272_548379_-	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional	NA|145aa|down_1|NZ_CP022903.1_548378_548813_-	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]	NA|711aa|down_2|NZ_CP022903.1_548824_550957_-	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|513aa|down_3|NZ_CP022903.1_550991_552530_-	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]	NA|602aa|down_4|NZ_CP022903.1_553210_555016_+	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|261aa|down_5|NZ_CP022903.1_555247_556030_+	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|286aa|down_6|NZ_CP022903.1_556097_556955_+	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|53aa|down_7|NZ_CP022903.1_557612_557771_-	NA	NA|35aa|down_8|NZ_CP022903.1_558450_558555_+	NA	NA|364aa|down_9|NZ_CP022903.1_558987_560079_-	NA
GCF_003354565.1_ASM335456v1	NZ_CP022903	Staphylococcus aureus strain 187 chromosome, complete genome	5	558890-558971	5	CRISPRCasFinder	no	csa3	WYL,RT,csa3,cas3,DEDDh,DinG	Type I-A	AAGAAGCCCCTAACAACTAAAGTTG	25	0	0	NA	NA	NA	1	1	Orphan	WYL,RT,csa3,cas3,DEDDh,DinG	NA|53aa|up_1|NZ_CP022903.1_557612_557771_-,NA|35aa|up_0|NZ_CP022903.1_558450_558555_+,NA|364aa|down_0|NZ_CP022903.1_558987_560079_-,NA|77aa|down_5|NZ_CP022903.1_563865_564096_+	NA|2482aa|up_9|NZ_CP022903.1_539508_546954_+	TIGR04263, cell_wall_surface_anchor_family_protein, SasC/Mrp/FmtB intercellular aggregation domain	NA|369aa|up_8|NZ_CP022903.1_547272_548379_-	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional	NA|145aa|up_7|NZ_CP022903.1_548378_548813_-	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]	NA|711aa|up_6|NZ_CP022903.1_548824_550957_-	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|513aa|up_5|NZ_CP022903.1_550991_552530_-	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]	NA|602aa|up_4|NZ_CP022903.1_553210_555016_+	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|261aa|up_3|NZ_CP022903.1_555247_556030_+	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|286aa|up_2|NZ_CP022903.1_556097_556955_+	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|53aa|up_1|NZ_CP022903.1_557612_557771_-	NA	NA|35aa|up_0|NZ_CP022903.1_558450_558555_+	NA	NA|364aa|down_0|NZ_CP022903.1_558987_560079_-	NA	NA|326aa|down_1|NZ_CP022903.1_560344_561322_-	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	csa3|107aa|down_2|NZ_CP022903.1_561323_561644_-	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|222aa|down_3|NZ_CP022903.1_561795_562461_+	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5	NA|313aa|down_4|NZ_CP022903.1_562896_563835_+	COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism]	NA|77aa|down_5|NZ_CP022903.1_563865_564096_+	NA	NA|458aa|down_6|NZ_CP022903.1_564767_566141_+	pfam01878, EVE, EVE domain	NA|138aa|down_7|NZ_CP022903.1_566597_567011_+	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function    prediction only]	NA|148aa|down_8|NZ_CP022903.1_567210_567654_+	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism]	NA|237aa|down_9|NZ_CP022903.1_567774_568485_-	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase
GCF_003354565.1_ASM335456v1	NZ_CP022903	Staphylococcus aureus strain 187 chromosome, complete genome	6	1431488-1431572	6	CRISPRCasFinder	no		WYL,RT,csa3,cas3,DEDDh,DinG	Orphan	CACCCCAACTTGCATTGTCTGTAGAA	26	1	2	1431514-1431546|1431514-1431546	NZ_CP022903.1_1157519-1157487|NZ_CP022903.1_2016880-2016848	NA	1	1	Orphan	WYL,RT,csa3,cas3,DEDDh,DinG	NA,NA	NA|228aa|up_9|NZ_CP022903.1_1420697_1421381_-	COG1030, NfeD, Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones]	NA|59aa|up_8|NZ_CP022903.1_1421624_1421801_-	PRK00270, rpsU, 30S ribosomal protein S21; Reviewed	NA|449aa|up_7|NZ_CP022903.1_1422093_1423440_-	COG0621, MiaB, 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis]	NA|251aa|up_6|NZ_CP022903.1_1423446_1424199_-	COG1385, COG1385, Uncharacterized protein conserved in bacteria [Function unknown]	NA|313aa|up_5|NZ_CP022903.1_1424200_1425139_-	pfam06325, PrmA, Ribosomal protein L11 methyltransferase (PrmA)	NA|380aa|up_4|NZ_CP022903.1_1425142_1426282_-	PRK14280, PRK14280, molecular chaperone DnaJ	NA|611aa|up_3|NZ_CP022903.1_1426417_1428250_-	PRK00290, dnaK, molecular chaperone DnaK; Provisional	NA|209aa|up_2|NZ_CP022903.1_1428318_1428945_-	PRK14140, PRK14140, heat shock protein GrpE; Provisional	NA|326aa|up_1|NZ_CP022903.1_1428976_1429954_-	TIGR00331, Heat-inducible_transcription_repressor_HrcA, heat shock gene repressor HrcA	NA|375aa|up_0|NZ_CP022903.1_1430054_1431179_-	PRK08599, PRK08599, oxygen-independent coproporphyrinogen III oxidase	NA|608aa|down_0|NZ_CP022903.1_1431744_1433568_-	PRK05433, PRK05433, GTP-binding protein LepA; Provisional	NA|84aa|down_1|NZ_CP022903.1_1433913_1434165_+	PRK00239, rpsT, 30S ribosomal protein S20; Reviewed	NA|325aa|down_2|NZ_CP022903.1_1434209_1435184_-	PRK05574, holA, DNA polymerase III subunit delta; Reviewed	NA|716aa|down_3|NZ_CP022903.1_1435240_1437388_-	COG2333, ComEC, Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]	NA|154aa|down_4|NZ_CP022903.1_1437446_1437908_-	TIGR02571, putative_dCMP_deaminase, ComE operon protein 2	NA|229aa|down_5|NZ_CP022903.1_1437999_1438686_-	COG1555, ComEA, DNA uptake protein and related DNA-binding proteins [DNA replication, recombination, and repair]	NA|239aa|down_6|NZ_CP022903.1_1438725_1439442_-	pfam13649, Methyltransf_25, Methyltransferase domain	NA|118aa|down_7|NZ_CP022903.1_1439444_1439798_-	COG0799, COG0799, Uncharacterized homolog of plant Iojap protein [Function unknown]	NA|195aa|down_8|NZ_CP022903.1_1439798_1440383_-	COG1713, COG1713, Predicted HD superfamily hydrolase involved in NAD metabolism [Coenzyme metabolism]	NA|190aa|down_9|NZ_CP022903.1_1440372_1440942_-	TIGR00482, Probable_nicotinate-nucleotide_adenylyltransferase, nicotinate (nicotinamide) nucleotide adenylyltransferase
GCF_003354565.1_ASM335456v1	NZ_CP022903	Staphylococcus aureus strain 187 chromosome, complete genome	7	1868289-1868370	7	CRISPRCasFinder	no		WYL,RT,csa3,cas3,DEDDh,DinG	Orphan	GGCCCCCACCCCAACTTACATTGT	24	1	5	1868313-1868346|1868313-1868346|1868313-1868346|1868313-1868346|1868313-1868346	NZ_CP022903.1_944503-944470|NZ_CP022903.1_2022439-2022406|NZ_CP022903.1_1558232-1558199|NZ_CP022903.1_1161860-1161893|NZ_CP022903.1_2871945-2871978	NA	1	1	Orphan	WYL,RT,csa3,cas3,DEDDh,DinG	NA|56aa|up_6|NZ_CP022903.1_1859622_1859790_+,NA	NA|239aa|up_9|NZ_CP022903.1_1857568_1858285_+	COG2932, COG2932, Predicted transcriptional regulator [Transcription]	NA|285aa|up_8|NZ_CP022903.1_1858296_1859151_+	smart00910, HIRAN, The HIRAN protein (HIP116, Rad5p N-terminal) is found in the N-terminal regions of the SWI2/SNF2 proteins typified by HIP116 and Rad5p	NA|62aa|up_7|NZ_CP022903.1_1859367_1859553_+	pfam00815, Histidinol_dh, Histidinol dehydrogenase	NA|56aa|up_6|NZ_CP022903.1_1859622_1859790_+	NA	NA|235aa|up_5|NZ_CP022903.1_1859929_1860634_+	pfam02452, PemK_toxin, PemK-like, MazF-like toxin of type II toxin-antitoxin system	NA|346aa|up_4|NZ_CP022903.1_1860827_1861865_+	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|339aa|up_3|NZ_CP022903.1_1862983_1864000_-	pfam07968, Leukocidin, Leukocidin/Hemolysin toxin family	NA|352aa|up_2|NZ_CP022903.1_1864021_1865077_-	pfam07968, Leukocidin, Leukocidin/Hemolysin toxin family	NA|391aa|up_1|NZ_CP022903.1_1865333_1866506_-	pfam00872, Transposase_mut, Transposase, Mutator family	NA|408aa|up_0|NZ_CP022903.1_1866844_1868068_+	PRK08588, PRK08588, succinyl-diaminopimelate desuccinylase; Reviewed	NA|436aa|down_0|NZ_CP022903.1_1868511_1869819_+	TIGR00933, Trk_system_potassium_uptake_protein_trkH	NA|440aa|down_1|NZ_CP022903.1_1869896_1871216_-	COG3464, COG3464, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|539aa|down_2|NZ_CP022903.1_1871878_1873495_-	PRK00013, groEL, chaperonin GroEL; Reviewed	NA|95aa|down_3|NZ_CP022903.1_1873570_1873855_-	PRK00364, groES, co-chaperonin GroES; Reviewed	NA|248aa|down_4|NZ_CP022903.1_1874029_1874773_+	pfam02517, Abi, CAAX protease self-immunity	NA|403aa|down_5|NZ_CP022903.1_1874797_1876006_-	TIGR04526, predic_Ig_block, putative immunoglobulin-blocking virulence protein	NA|209aa|down_6|NZ_CP022903.1_1876202_1876829_+	COG3560, FMR2, Predicted oxidoreductase related to nitroreductase [General function prediction only]	NA|262aa|down_7|NZ_CP022903.1_1877189_1877975_+	cd07583, nitrilase_5, Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases)	NA|45aa|down_8|NZ_CP022903.1_1878574_1878709_-	PRK14752, PRK14752, delta-lysin family phenol-soluble modulin	NA|188aa|down_9|NZ_CP022903.1_1878944_1879508_+	COG4512, AgrB, Membrane protein putatively involved in post-translational modification of the autoinducing quorum-sensing peptide [Posttranslational modification, protein turnover, chaperones / Signal transduction mechanisms / Transcription]
GCF_003354565.1_ASM335456v1	NZ_CP022903	Staphylococcus aureus strain 187 chromosome, complete genome	8	1955073-1955154	8	CRISPRCasFinder	no		WYL,RT,csa3,cas3,DEDDh,DinG	Orphan	TTCTACAGGCAATGCAAGTTGGGG	24	1	1	1955097-1955130	NZ_CP022903.1_1157486-1157519	NA	1	1	Orphan	WYL,RT,csa3,cas3,DEDDh,DinG	NA,NA|38aa|down_1|NZ_CP022903.1_1956137_1956251_-	NA|417aa|up_9|NZ_CP022903.1_1945501_1946752_-	TIGR01979, Probable_cysteine_desulfurase, cysteine desulfurases, SufSfamily	NA|436aa|up_8|NZ_CP022903.1_1946857_1948165_-	COG0719, SufB, Cysteine desulfurase activator SufB [Posttranslational modification, protein turnover, chaperones]	NA|254aa|up_7|NZ_CP022903.1_1948262_1949024_-	COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]	NA|284aa|up_6|NZ_CP022903.1_1949351_1950203_+	COG2035, COG2035, Predicted membrane protein [Function unknown]	NA|65aa|up_5|NZ_CP022903.1_1950436_1950631_-	COG3237, COG3237, Uncharacterized protein conserved in bacteria [Function unknown]	NA|274aa|up_4|NZ_CP022903.1_1950984_1951806_-	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]	NA|232aa|up_3|NZ_CP022903.1_1951823_1952519_-	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism]	NA|342aa|up_2|NZ_CP022903.1_1952511_1953537_-	COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]	NA|99aa|up_1|NZ_CP022903.1_1953786_1954083_-	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|129aa|up_0|NZ_CP022903.1_1954075_1954462_-	COG1658, COG1658, Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair]	NA|293aa|down_0|NZ_CP022903.1_1955257_1956136_-	COG3878, COG3878, Uncharacterized protein conserved in bacteria [Function unknown]	NA|38aa|down_1|NZ_CP022903.1_1956137_1956251_-	NA	NA|127aa|down_2|NZ_CP022903.1_1956314_1956695_-	PRK01202, PRK01202, glycine cleavage system protein GcvH	NA|119aa|down_3|NZ_CP022903.1_1956852_1957209_-	cd03036, ArsC_like, Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC	NA|107aa|down_4|NZ_CP022903.1_1957352_1957673_+	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|180aa|down_5|NZ_CP022903.1_1957823_1958363_-	cd02135, YdjA-like, nitroreductase family protein similar to Escherichia coli YdjA	NA|239aa|down_6|NZ_CP022903.1_1958445_1959162_-	PRK13575, PRK13575, type I 3-dehydroquinate dehydratase	NA|141aa|down_7|NZ_CP022903.1_1959309_1959732_+	TIGR03561, organ_hyd_perox, peroxiredoxin, Ohr subfamily	NA|165aa|down_8|NZ_CP022903.1_1960130_1960625_+	pfam13420, Acetyltransf_4, Acetyltransferase (GNAT) domain	NA|206aa|down_9|NZ_CP022903.1_1960779_1961397_+	COG1279, COG1279, Lysine efflux permease [General function prediction only]
GCF_003354565.1_ASM335456v1	NZ_CP022903	Staphylococcus aureus strain 187 chromosome, complete genome	9	2022360-2022438	9	CRISPRCasFinder	no	cas3	WYL,RT,csa3,cas3,DEDDh,DinG	Unclear	AGAATTTCGAAAAGAAATTCTACA	24	1	3	2022384-2022414|2022384-2022414|2022384-2022414	NZ_CP022903.1_2557498-2557468|NZ_CP022903.1_1466000-1465970|NZ_CP022903.1_2557553-2557523	NA	1	1	Unclear	WYL,RT,csa3,cas3,DEDDh,DinG	NA,NA|36aa|down_5|NZ_CP022903.1_2029916_2030024_-,NA|35aa|down_7|NZ_CP022903.1_2031456_2031561_-	NA|301aa|up_9|NZ_CP022903.1_2011241_2012144_+	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]	NA|196aa|up_8|NZ_CP022903.1_2012386_2012974_-	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed	NA|315aa|up_7|NZ_CP022903.1_2013537_2014482_-	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA	NA|332aa|up_6|NZ_CP022903.1_2014592_2015588_-	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|304aa|up_5|NZ_CP022903.1_2015584_2016496_-	COG1660, COG1660, Predicted P-loop-containing kinase [General function prediction only]	NA|312aa|up_4|NZ_CP022903.1_2017381_2018317_-	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase	NA|480aa|up_3|NZ_CP022903.1_2018383_2019823_-	sd00008, TPR_YbbN, C-terminal Tetratricopeptide repeat (TPR) region of YbbN and similar motifs	NA|162aa|up_2|NZ_CP022903.1_2019830_2020316_-	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins	NA|280aa|up_1|NZ_CP022903.1_2020323_2021163_-	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed	NA|311aa|up_0|NZ_CP022903.1_2021168_2022101_-	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional	NA|949aa|down_0|NZ_CP022903.1_2022764_2025611_-	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|662aa|down_1|NZ_CP022903.1_2025618_2027604_-	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|79aa|down_2|NZ_CP022903.1_2027872_2028109_-	COG4897, CsbA, Uncharacterized protein conserved in bacteria [Function unknown]	NA|217aa|down_3|NZ_CP022903.1_2028105_2028756_-	pfam12917, HD_2, HD containing hydrolase-like enzyme	NA|280aa|down_4|NZ_CP022903.1_2028929_2029769_-	COG3942, COG3942, Surface antigen [General function prediction only]	NA|36aa|down_5|NZ_CP022903.1_2029916_2030024_-	NA	NA|370aa|down_6|NZ_CP022903.1_2030177_2031288_-	PRK00578, prfB, peptide chain release factor 2; Validated	NA|35aa|down_7|NZ_CP022903.1_2031456_2031561_-	NA	NA|844aa|down_8|NZ_CP022903.1_2031602_2034134_-	PRK12904, PRK12904, preprotein translocase subunit SecA; Reviewed	NA|191aa|down_9|NZ_CP022903.1_2034547_2035120_-	COG1544, COG1544, Ribosome-associated protein Y (PSrp-1) [Translation, ribosomal structure and biogenesis]
GCF_003354565.1_ASM335456v1	NZ_CP022903	Staphylococcus aureus strain 187 chromosome, complete genome	10	2422509-2422611	10	CRISPRCasFinder	no		WYL,RT,csa3,cas3,DEDDh,DinG	Orphan	CAAATTTAATACTCAATTCATATA	24	0	0	NA	NA	NA	1	1	Orphan	WYL,RT,csa3,cas3,DEDDh,DinG	NA|179aa|up_7|NZ_CP022903.1_2414127_2414664_+,NA|221aa|up_1|NZ_CP022903.1_2420755_2421418_+,NA|33aa|down_0|NZ_CP022903.1_2423286_2423385_-,NA|128aa|down_6|NZ_CP022903.1_2429632_2430016_+,NA|70aa|down_8|NZ_CP022903.1_2430840_2431050_+	NA|91aa|up_9|NZ_CP022903.1_2412360_2412633_+	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|235aa|up_8|NZ_CP022903.1_2413031_2413736_+	pfam02452, PemK_toxin, PemK-like, MazF-like toxin of type II toxin-antitoxin system	NA|179aa|up_7|NZ_CP022903.1_2414127_2414664_+	NA	NA|514aa|up_6|NZ_CP022903.1_2414776_2416318_-	PRK00074, guaA, GMP synthase; Reviewed	NA|489aa|up_5|NZ_CP022903.1_2416342_2417809_-	PRK05567, PRK05567, inosine 5'-monophosphate dehydrogenase; Reviewed	NA|423aa|up_4|NZ_CP022903.1_2417846_2419115_-	TIGR03173, pbuX, xanthine permease	NA|193aa|up_3|NZ_CP022903.1_2419114_2419693_-	PRK09219, PRK09219, xanthine phosphoribosyltransferase; Validated	NA|136aa|up_2|NZ_CP022903.1_2420205_2420613_+	pfam11181, YflT, Heat induced stress protein YflT	NA|221aa|up_1|NZ_CP022903.1_2420755_2421418_+	NA	NA|319aa|up_0|NZ_CP022903.1_2421535_2422492_+	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type	NA|33aa|down_0|NZ_CP022903.1_2423286_2423385_-	NA	NA|463aa|down_1|NZ_CP022903.1_2423469_2424858_+	COG1823, COG1823, Predicted Na+/dicarboxylate symporter [General function prediction only]	NA|252aa|down_2|NZ_CP022903.1_2424937_2425693_-	cd02146, NfsA-like, nitroreductase similar to Escherichia coli NfsA	NA|190aa|down_3|NZ_CP022903.1_2426184_2426754_+	TIGR03137, AhpC, peroxiredoxin	NA|508aa|down_4|NZ_CP022903.1_2426769_2428293_+	PRK15317, PRK15317, alkyl hydroperoxide reductase subunit F; Provisional	NA|209aa|down_5|NZ_CP022903.1_2428736_2429363_+	NF033193, lipo_NDxxF, NDxxF motif lipoprotein	NA|128aa|down_6|NZ_CP022903.1_2429632_2430016_+	NA	NA|194aa|down_7|NZ_CP022903.1_2430081_2430663_-	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]	NA|70aa|down_8|NZ_CP022903.1_2430840_2431050_+	NA	NA|84aa|down_9|NZ_CP022903.1_2431088_2431340_-	COG2261, COG2261, Predicted membrane protein [Function unknown]
