assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_003352225.1_ASM335222v1	NZ_CP030124	Streptococcus suis strain SH1510 chromosome, complete genome	1	16754-16889	1	CRISPRCasFinder	no	cas3	cas3,csa3,RT,DinG,DEDDh	Unclear	CTAGTTAACAGAGGAACGAAAAAAAGTTTCGAAAAAGTGTTGACAA	46	0	0	NA	NA	NA	1	1	Unclear	cas3,csa3,RT,DinG,DEDDh	NA,NA	NA|372aa|up_9|NZ_CP030124.1_4497_5613_+	PRK09601, PRK09601, redox-regulated ATPase YchF	NA|190aa|up_8|NZ_CP030124.1_5770_6340_+	PRK05426, PRK05426, peptidyl-tRNA hydrolase; Provisional	cas3|1165aa|up_7|NZ_CP030124.1_6339_9834_+	COG1197, Mfd, Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]	NA|91aa|up_6|NZ_CP030124.1_9883_10156_+	COG1188, COG1188, Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) [Translation, ribosomal structure and biogenesis]	NA|123aa|up_5|NZ_CP030124.1_10142_10511_+	COG2919, COG2919, Septum formation initiator [Cell division and chromosome partitioning]	NA|427aa|up_4|NZ_CP030124.1_10633_11914_+	pfam13354, Beta-lactamase2, Beta-lactamase enzyme family	NA|423aa|up_3|NZ_CP030124.1_11914_13183_+	cd01992, PP-ATPase, N-terminal domain of predicted ATPase of the PP-loop faimly implicated in cell cycle control [Cell division and chromosome partitioning]	NA|181aa|up_2|NZ_CP030124.1_13190_13733_+	COG0634, Hpt, Hypoxanthine-guanine phosphoribosyltransferase [Nucleotide transport and metabolism]	NA|657aa|up_1|NZ_CP030124.1_13754_15725_+	COG0465, HflB, ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]	NA|157aa|up_0|NZ_CP030124.1_16062_16533_+	TIGR02937, RNA_polymerase_sigma_factor, RNA polymerase sigma factor, sigma-70 family	NA|279aa|down_0|NZ_CP030124.1_23924_24761_+	PRK13922, PRK13922, rod shape-determining protein MreC; Provisional	NA|172aa|down_1|NZ_CP030124.1_24750_25266_+	pfam04093, MreD, rod shape-determining protein MreD	NA|419aa|down_2|NZ_CP030124.1_25350_26607_+	COG3883, COG3883, Uncharacterized protein conserved in bacteria [Function unknown]	NA|323aa|down_3|NZ_CP030124.1_26709_27678_+	PRK02269, PRK02269, ribose-phosphate diphosphokinase	NA|393aa|down_4|NZ_CP030124.1_27764_28943_+	PRK07309, PRK07309, pyridoxal phosphate-dependent aminotransferase	NA|261aa|down_5|NZ_CP030124.1_28929_29712_+	TIGR00613, DNA_repair_protein_RecO, DNA repair protein RecO	NA|336aa|down_6|NZ_CP030124.1_29708_30716_+	PRK05331, PRK05331, phosphate acyltransferase PlsX	NA|83aa|down_7|NZ_CP030124.1_30708_30957_+	PRK12449, PRK12449, acyl carrier protein; Provisional	NA|236aa|down_8|NZ_CP030124.1_31074_31782_+	PRK09362, PRK09362, phosphoribosylaminoimidazole-succinocarboxamide synthase; Reviewed	NA|1240aa|down_9|NZ_CP030124.1_31794_35514_+	TIGR01857, FGAM-synthase, phosphoribosylformylglycinamidine synthase, clade II
GCF_003352225.1_ASM335222v1	NZ_CP030124	Streptococcus suis strain SH1510 chromosome, complete genome	2	92554-92689	2	CRISPRCasFinder	no		cas3,csa3,RT,DinG,DEDDh	Orphan	CTAGTTAACAGAGGAACGAAAAAAAGTTTCGAAAAAGTGTTGACAA	46	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,RT,DinG,DEDDh	NA,NA|140aa|down_3|NZ_CP030124.1_101705_102125_-,NA|84aa|down_5|NZ_CP030124.1_103728_103980_-,NA|108aa|down_6|NZ_CP030124.1_104035_104359_-	NA|437aa|up_9|NZ_CP030124.1_84274_85585_+	PRK09204, secY, preprotein translocase subunit SecY; Reviewed	NA|214aa|up_8|NZ_CP030124.1_85678_86320_+	PRK00279, adk, adenylate kinase; Reviewed	NA|73aa|up_7|NZ_CP030124.1_86441_86660_+	PRK00276, infA, translation initiation factor IF-1; Validated	NA|39aa|up_6|NZ_CP030124.1_86684_86801_+	pfam00444, Ribosomal_L36, Ribosomal protein L36	NA|122aa|up_5|NZ_CP030124.1_86820_87186_+	PRK05179, rpsM, 30S ribosomal protein S13; Validated	NA|128aa|up_4|NZ_CP030124.1_87203_87587_+	PRK05309, PRK05309, 30S ribosomal protein S11; Validated	NA|313aa|up_3|NZ_CP030124.1_87631_88570_+	PRK05182, PRK05182, DNA-directed RNA polymerase subunit alpha; Provisional	NA|129aa|up_2|NZ_CP030124.1_88584_88971_+	PRK05591, rplQ, 50S ribosomal protein L17; Validated	NA|419aa|up_1|NZ_CP030124.1_89175_90432_-	COG3464, COG3464, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|157aa|up_0|NZ_CP030124.1_91862_92333_+	TIGR02937, RNA_polymerase_sigma_factor, RNA polymerase sigma factor, sigma-70 family	NA|378aa|down_0|NZ_CP030124.1_99294_100428_-	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|69aa|down_1|NZ_CP030124.1_100417_100624_-	pfam11372, DUF3173, Domain of unknown function (DUF3173)	NA|339aa|down_2|NZ_CP030124.1_100684_101701_-	pfam02486, Rep_trans, Replication initiation factor	NA|140aa|down_3|NZ_CP030124.1_101705_102125_-	NA	NA|459aa|down_4|NZ_CP030124.1_102401_103778_-	COG1674, FtsK, DNA segregation ATPase FtsK/SpoIIIE and related proteins [Cell division and chromosome partitioning]	NA|84aa|down_5|NZ_CP030124.1_103728_103980_-	NA	NA|108aa|down_6|NZ_CP030124.1_104035_104359_-	NA	NA|261aa|down_7|NZ_CP030124.1_105244_106027_+	pfam11185, DUF2971, Protein of unknown function (DUF2971)	NA|148aa|down_8|NZ_CP030124.1_106763_107207_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|235aa|down_9|NZ_CP030124.1_107207_107912_+	COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
GCF_003352225.1_ASM335222v1	NZ_CP030124	Streptococcus suis strain SH1510 chromosome, complete genome	3	226660-226769	3	CRISPRCasFinder	no		cas3,csa3,RT,DinG,DEDDh	Orphan	ACTGTTGACCTAACAACCAATCAAGT	26	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,RT,DinG,DEDDh	NA,NA|104aa|down_3|NZ_CP030124.1_232556_232868_+	NA|253aa|up_9|NZ_CP030124.1_215052_215811_+	COG0600, TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism]	NA|264aa|up_8|NZ_CP030124.1_215795_216587_+	COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]	NA|343aa|up_7|NZ_CP030124.1_216617_217646_+	cd13561, PBP2_SsuA_like_4, Putative substrate binding domain of sulfonate binding protein-like, the type 2 periplasmic binding protein fold	NA|270aa|up_6|NZ_CP030124.1_217739_218549_+	cd01399, GlcN6P_deaminase, GlcN6P_deaminase: Glucosamine-6-phosphate (GlcN6P) deaminase subfamily; GlcN6P deaminase catalyzes the reversible conversion of GlcN6P to D-fructose-6-phosphate (Fru6P) and ammonium	NA|60aa|up_5|NZ_CP030124.1_218709_218889_+	COG2217, ZntA, Cation transport ATPase [Inorganic ion transport and metabolism]	NA|314aa|up_4|NZ_CP030124.1_219841_220783_+	cd02094, P-type_ATPase_Cu-like, P-type heavy metal-transporting ATPase, similar to human copper-transporting ATPases, ATP7A and ATP7B	NA|830aa|up_3|NZ_CP030124.1_220821_223311_-	TIGR01448, recD_rel, helicase, putative, RecD/TraA family	NA|210aa|up_2|NZ_CP030124.1_223374_224004_-	TIGR02227, Inactive_signal_peptidase_IA	NA|297aa|up_1|NZ_CP030124.1_224013_224904_-	PRK00996, PRK00996, ribonuclease HIII; Provisional	NA|328aa|up_0|NZ_CP030124.1_224988_225972_+	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only]	NA|542aa|down_0|NZ_CP030124.1_227852_229478_-	TIGR02403, Trehalose-6-phosphate_hydrolase, alpha,alpha-phosphotrehalase	NA|665aa|down_1|NZ_CP030124.1_229558_231553_-	TIGR01992, phosphotransferase_system_trehalose_permease, PTS system, trehalose-specific IIBC component	NA|238aa|down_2|NZ_CP030124.1_231785_232499_+	TIGR02404, Trehalose_operon_transcriptional_repressor, trehalose operon repressor, B	NA|104aa|down_3|NZ_CP030124.1_232556_232868_+	NA	NA|183aa|down_4|NZ_CP030124.1_232864_233413_+	COG1286, CvpA, Uncharacterized membrane protein, required for colicin V production [General function prediction only]	NA|778aa|down_5|NZ_CP030124.1_233833_236167_+	PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed	NA|218aa|down_6|NZ_CP030124.1_236190_236844_+	cd04301, NAT_SF, N-Acyltransferase superfamily: Various enzymes that characteristically catalyze the transfer of an acyl group to a substrate	NA|105aa|down_7|NZ_CP030124.1_237215_237530_+	TIGR01068, Thioredoxin-like_protein_slr0233, thioredoxin	NA|510aa|down_8|NZ_CP030124.1_237846_239376_+	COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism]	NA|313aa|down_9|NZ_CP030124.1_239415_240354_+	PRK14018, PRK14018, bifunctional peptide-methionine (S)-S-oxide reductase MsrA/peptide-methionine (R)-S-oxide reductase MsrB
GCF_003352225.1_ASM335222v1	NZ_CP030124	Streptococcus suis strain SH1510 chromosome, complete genome	4	350280-350415	4	CRISPRCasFinder	no		cas3,csa3,RT,DinG,DEDDh	Orphan	CTAGTTAACAGAGGAACGAAAAAAAGTTTCGAAAAAGTGTTGACAA	46	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,RT,DinG,DEDDh	NA,NA	NA|308aa|up_9|NZ_CP030124.1_336603_337527_+	pfam12740, Chlorophyllase2, Chlorophyllase enzyme	NA|340aa|up_8|NZ_CP030124.1_337633_338653_+	COG0657, Aes, Esterase/lipase [Lipid metabolism]	NA|428aa|up_7|NZ_CP030124.1_338874_340158_+	PRK01490, tig, trigger factor; Provisional	NA|295aa|up_6|NZ_CP030124.1_340209_341094_+	COG1215, COG1215, Glycosyltransferases, probably involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]	NA|307aa|up_5|NZ_CP030124.1_341201_342122_+	cd01017, AdcA, Metal binding protein AdcA	NA|1052aa|up_4|NZ_CP030124.1_342155_345311_+	TIGR01363, pneumococcal_histidine_triad_A_protein, streptococcal histidine triad protein	NA|194aa|up_3|NZ_CP030124.1_345437_346019_+	TIGR04567, DNA-directed_RNA_polymerase_subunit_delta, DNA-directed RNA polymerase delta subunit	NA|535aa|up_2|NZ_CP030124.1_346211_347816_+	PRK05380, pyrG, CTP synthetase; Validated	NA|294aa|up_1|NZ_CP030124.1_348414_349296_+	PRK07315, PRK07315, fructose-bisphosphate aldolase; Provisional	NA|63aa|up_0|NZ_CP030124.1_349689_349878_+	PRK00359, rpmB, 50S ribosomal protein L28; Reviewed	NA|673aa|down_0|NZ_CP030124.1_356179_358198_+	PRK10917, PRK10917, ATP-dependent DNA helicase RecG; Provisional	NA|320aa|down_1|NZ_CP030124.1_358261_359221_-	cd08964, L-asparaginase_II, Type II (periplasmic) bacterial L-asparaginase	NA|282aa|down_2|NZ_CP030124.1_359289_360135_+	cd07517, HAD_HPP, phosphatase, similar to Bacteroides thetaiotaomicron VPI-5482 BT4131 hexose phosphate phosphatase; belongs to the haloacid dehalogenase-like superfamily	NA|173aa|down_3|NZ_CP030124.1_360136_360655_+	COG4696, COG4696, Uncharacterized protein conserved in bacteria [Function unknown]	NA|151aa|down_4|NZ_CP030124.1_360670_361123_-	pfam00582, Usp, Universal stress protein family	NA|405aa|down_5|NZ_CP030124.1_361277_362492_+	PRK09265, PRK09265, aminotransferase AlaT; Validated	NA|263aa|down_6|NZ_CP030124.1_362643_363432_+	PRK04158, PRK04158, GTP-sensing pleiotropic transcriptional regulator CodY	NA|184aa|down_7|NZ_CP030124.1_363433_363985_+	cd00431, cysteine_hydrolases, Cysteine hydrolases; This family contains amidohydrolases, like CSHase (N-carbamoylsarcosine amidohydrolase), involved in creatine metabolism and nicotinamidase, converting nicotinamide to nicotinic acid and ammonia in the pyridine nucleotide cycle	NA|116aa|down_8|NZ_CP030124.1_364462_364810_+	PRK05338, rplS, 50S ribosomal protein L19; Provisional	NA|225aa|down_9|NZ_CP030124.1_364995_365670_+	PRK00043, thiE, thiamine phosphate synthase
GCF_003352225.1_ASM335222v1	NZ_CP030124	Streptococcus suis strain SH1510 chromosome, complete genome	5	781823-781938	5	CRISPRCasFinder	no		cas3,csa3,RT,DinG,DEDDh	Orphan	GTCTGGGAGACTGTTTTATCCCTGAGCTAG	30	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,RT,DinG,DEDDh	NA,NA|62aa|down_1|NZ_CP030124.1_782743_782929_-	NA|94aa|up_9|NZ_CP030124.1_770476_770758_+	PRK01678, rpmE2, type B 50S ribosomal protein L31	NA|410aa|up_8|NZ_CP030124.1_771205_772435_+	COG0772, FtsW, Bacterial cell division membrane protein [Cell division and chromosome partitioning]	NA|180aa|up_7|NZ_CP030124.1_772448_772988_+	cd03135, GATase1_DJ-1, Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1	NA|651aa|up_6|NZ_CP030124.1_773169_775122_+	PRK05644, gyrB, DNA gyrase subunit B; Validated	NA|575aa|up_5|NZ_CP030124.1_775210_776935_+	PRK04778, PRK04778, septation ring formation regulator EzrA; Provisional	NA|212aa|up_4|NZ_CP030124.1_776986_777622_+	cd07500, HAD_PSP, phosphoserine phosphatase (PSP), similar to Methanococcus Jannaschii PSP and Saccharomyces cerevisiae SER2p	NA|217aa|up_3|NZ_CP030124.1_777796_778447_-	cd04302, HAD_5NT, haloacid dehalogenase (HAD)-like 5'-nucleotidases similar to the Pseudomonas aeruginosa PA0065	NA|376aa|up_2|NZ_CP030124.1_778554_779682_+	pfam02595, Gly_kinase, Glycerate kinase family	NA|151aa|up_1|NZ_CP030124.1_779908_780361_-	pfam07997, DUF1694, Protein of unknown function (DUF1694)	NA|436aa|up_0|NZ_CP030124.1_780510_781818_+	PRK00077, eno, enolase; Provisional	NA|214aa|down_0|NZ_CP030124.1_782069_782711_+	COG1011, COG1011, Predicted hydrolase (HAD superfamily) [General function prediction only]	NA|62aa|down_1|NZ_CP030124.1_782743_782929_-	NA	NA|335aa|down_2|NZ_CP030124.1_782992_783997_-	pfam10282, Lactonase, Lactonase, 7-bladed beta-propeller	NA|389aa|down_3|NZ_CP030124.1_784132_785299_+	COG0628, yhhT, Predicted permease, member of the PurR regulon [General function prediction only]	NA|410aa|down_4|NZ_CP030124.1_785288_786518_+	TIGR02917, TPR_domain_protein, putative PEP-CTERM system TPR-repeat lipoprotein	NA|239aa|down_5|NZ_CP030124.1_786521_787238_+	COG3527, AlsD, Alpha-acetolactate decarboxylase [Secondary metabolites biosynthesis, transport, and catabolism]	NA|553aa|down_6|NZ_CP030124.1_787263_788922_-	pfam05833, FbpA, Fibronectin-binding protein A N-terminus (FbpA)	NA|280aa|down_7|NZ_CP030124.1_789227_790067_+	PRK09772, PRK09772, transcriptional antiterminator BglG; Provisional	NA|614aa|down_8|NZ_CP030124.1_790077_791919_+	TIGR01995, beta-glucosides_PTS_EIIBCA, PTS system, beta-glucoside-specific IIABC component	NA|475aa|down_9|NZ_CP030124.1_791933_793358_+	COG2723, BglB, Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase [Carbohydrate transport and metabolism]
