assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_003351885.1_ASM335188v1	NZ_CP022243	Vibrio parahaemolyticus strain PB1937 chromosome I, complete sequence	1	1014530-1014738	1,1	CRISPRCasFinder,CRT	no	cas5f,cas6f	cas3,DinG,csa3,cas5f,cas6f,csx1,DEDDh,PD-DExK,WYL	Unclear	GTGTCCTGCCGAATAGGCAGCTAAGAATG,GTGTCCTGCCGAATAGGCAGCTAAGAATG	29,29	0	0	NA	NA	NA:NA	3,3	3	Unclear	cas3,DinG,csa3,cas5f,cas6f,csx1,DEDDh,PD-DExK,WYL	NA|182aa|up_7|NZ_CP022243.1_1003398_1003944_+,NA|141aa|up_3|NZ_CP022243.1_1008882_1009305_+,NA|162aa|down_4|NZ_CP022243.1_1023154_1023640_-,NA|46aa|down_7|NZ_CP022243.1_1024601_1024739_+,NA|347aa|down_8|NZ_CP022243.1_1024887_1025928_+,NA|203aa|down_9|NZ_CP022243.1_1032704_1033313_+	NA|366aa|up_9|NZ_CP022243.1_1001888_1002986_+	pfam05621, TniB, Bacterial TniB protein	NA|105aa|up_8|NZ_CP022243.1_1002982_1003297_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|182aa|up_7|NZ_CP022243.1_1003398_1003944_+	NA	NA|461aa|up_6|NZ_CP022243.1_1003937_1005320_+	COG1061, SSL2, DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]	NA|289aa|up_5|NZ_CP022243.1_1005316_1006183_-	cd10447, GIY-YIG_unchar_2, GIY-YIG domain of uncharacterized hypothetical protein found in bacteria and archaea	NA|531aa|up_4|NZ_CP022243.1_1006825_1008418_+	pfam13304, AAA_21, AAA domain, putative AbiEii toxin, Type IV TA system	NA|141aa|up_3|NZ_CP022243.1_1008882_1009305_+	NA	NA|404aa|up_2|NZ_CP022243.1_1009448_1010660_+	pfam06527, TniQ, TniQ	cas5f|696aa|up_1|NZ_CP022243.1_1010662_1012750_+	cd09736, Csy2_I-F, CRISPR/Cas system-associated RAMP superfamily protein Csy2	cas6f|202aa|up_0|NZ_CP022243.1_1013795_1014401_+	cd09739, Cas6_I-F, CRISPR/Cas system-associated RAMP superfamily protein Cas6f	NA|359aa|down_0|NZ_CP022243.1_1015123_1016200_+	pfam03781, FGE-sulfatase, Sulfatase-modifying factor enzyme 1	NA|854aa|down_1|NZ_CP022243.1_1016223_1018785_-	cd00118, LysM, Lysin Motif is a small domain involved in binding peptidoglycan	NA|198aa|down_2|NZ_CP022243.1_1018797_1019391_-	pfam13503, DUF4123, Domain of unknown function (DUF4123)	NA|276aa|down_3|NZ_CP022243.1_1022044_1022872_+	pfam04471, Mrr_cat, Restriction endonuclease	NA|162aa|down_4|NZ_CP022243.1_1023154_1023640_-	NA	NA|71aa|down_5|NZ_CP022243.1_1023795_1024008_+	PRK00430, fis, DNA-binding transcriptional regulator Fis	NA|81aa|down_6|NZ_CP022243.1_1024248_1024491_+	pfam09722, DUF2384, Protein of unknown function (DUF2384)	NA|46aa|down_7|NZ_CP022243.1_1024601_1024739_+	NA	NA|347aa|down_8|NZ_CP022243.1_1024887_1025928_+	NA	NA|203aa|down_9|NZ_CP022243.1_1032704_1033313_+	NA
GCF_003351885.1_ASM335188v1	NZ_CP022244	Vibrio parahaemolyticus strain PB1937 chromosome II, complete sequence	1	89063-89160	1	CRISPRCasFinder	no	DEDDh	DEDDh,WYL,csa3,cas3	Unclear	TATTTTTAAAATGCCTTTTCAAAAA	25	0	0	NA	NA	NA	1	1	Orphan	cas3,DinG,csa3,cas5f,cas6f,csx1,DEDDh,PD-DExK,WYL	NA|135aa|up_9|NZ_CP022244.1_79044_79449_-,NA|743aa|down_8|NZ_CP022244.1_96954_99183_+	NA|135aa|up_9|NZ_CP022244.1_79044_79449_-	NA	NA|364aa|up_8|NZ_CP022244.1_79458_80550_-	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain	NA|154aa|up_7|NZ_CP022244.1_80549_81011_-	COG3915, COG3915, Uncharacterized protein conserved in bacteria [Function unknown]	NA|280aa|up_6|NZ_CP022244.1_81456_82296_-	PLN02442, PLN02442, S-formylglutathione hydrolase	NA|383aa|up_5|NZ_CP022244.1_82357_83506_-	cd08300, alcohol_DH_class_III, class III alcohol dehydrogenases	NA|269aa|up_4|NZ_CP022244.1_83799_84606_+	pfam00797, Acetyltransf_2, N-acetyltransferase	NA|290aa|up_3|NZ_CP022244.1_84686_85556_+	cd08470, PBP2_CrgA_like_1, The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator CrgA-like, contains the type 2 periplasmic binding domain	DEDDh|237aa|up_2|NZ_CP022244.1_85556_86267_-	PRK09146, PRK09146, DNA polymerase III subunit epsilon; Validated	NA|623aa|up_1|NZ_CP022244.1_86269_88138_-	COG2905, COG2905, Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]	NA|261aa|up_0|NZ_CP022244.1_88221_89004_-	PRK15090, PRK15090, DNA-binding transcriptional regulator KdgR; Provisional	NA|254aa|down_0|NZ_CP022244.1_89259_90021_+	PRK08993, PRK08993, 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase KduD	NA|175aa|down_1|NZ_CP022244.1_90039_90564_+	pfam10688, Imp-YgjV, Bacterial inner membrane protein	NA|107aa|down_2|NZ_CP022244.1_90571_90892_+	cd02238, cupin_KdgF, pectin degradation protein KdgF and related proteins, cupin domain	NA|212aa|down_3|NZ_CP022244.1_90932_91568_+	PRK09273, PRK09273, hypothetical protein; Provisional	NA|304aa|down_4|NZ_CP022244.1_91645_92557_+	COG0657, Aes, Esterase/lipase [Lipid metabolism]	NA|310aa|down_5|NZ_CP022244.1_92655_93585_+	cd01166, KdgK, 2-keto-3-deoxygluconate kinase (KdgK) phosphorylates 2-keto-3-deoxygluconate (KDG) to form 2-keto-3-deoxy-6-phosphogluconate (KDGP)	NA|208aa|down_6|NZ_CP022244.1_93596_94220_+	PRK05718, PRK05718, keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional	NA|226aa|down_7|NZ_CP022244.1_96261_96939_+	pfam06178, KdgM, Oligogalacturonate-specific porin protein (KdgM)	NA|743aa|down_8|NZ_CP022244.1_96954_99183_+	NA	NA|591aa|down_9|NZ_CP022244.1_99483_101256_+	cd11477, SLC5sbd_u1, Uncharacterized bacterial solute carrier 5 subfamily; putative solute-binding domain
GCF_003351885.1_ASM335188v1	NZ_CP022244	Vibrio parahaemolyticus strain PB1937 chromosome II, complete sequence	2	640884-641017	2	CRISPRCasFinder	no		DEDDh,WYL,csa3,cas3	Orphan	GGCGGTCGTCGTGAAGGTGGTTTCCGTGGTAACCG	35	0	0	NA	NA	NA	1	1	Orphan	cas3,DinG,csa3,cas5f,cas6f,csx1,DEDDh,PD-DExK,WYL	NA,NA|182aa|down_3|NZ_CP022244.1_647313_647859_+,NA|256aa|down_5|NZ_CP022244.1_649546_650314_+,NA|66aa|down_6|NZ_CP022244.1_650470_650668_+,NA|334aa|down_8|NZ_CP022244.1_651400_652402_-	NA|517aa|up_9|NZ_CP022244.1_625777_627328_+	smart00283, MA, Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer)	NA|312aa|up_8|NZ_CP022244.1_627671_628607_-	COG0583, LysR, Transcriptional regulator [Transcription]	NA|790aa|up_7|NZ_CP022244.1_628628_630998_-	cd16025, PAS_like, Bacterial Arylsulfatase of Pseudomonas aeruginosa and related proteins	NA|413aa|up_6|NZ_CP022244.1_631005_632244_-	TIGR03942, sulfatase_rSAM, anaerobic sulfatase-maturating enzyme	NA|318aa|up_5|NZ_CP022244.1_632379_633333_+	COG0583, LysR, Transcriptional regulator [Transcription]	NA|227aa|up_4|NZ_CP022244.1_633777_634458_+	cd03450, NodN, NodN (nodulation factor N) contains a single hot dog fold similar to those of the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit	NA|276aa|up_3|NZ_CP022244.1_634512_635340_-	cd13653, PBP2_phosphate_like_1, Substrate binding domain of putative ABC-type phosphate transporter, a member of the type 2 periplasmic binding fold superfamily	NA|118aa|up_2|NZ_CP022244.1_635596_635950_+	pfam11225, DUF3024, Protein of unknown function (DUF3024)	NA|268aa|up_1|NZ_CP022244.1_635954_636758_-	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription]	NA|669aa|up_0|NZ_CP022244.1_636829_638836_-	PRK05054, PRK05054, exoribonuclease II; Provisional	NA|513aa|down_0|NZ_CP022244.1_641221_642760_-	cd01948, EAL, EAL domain	NA|400aa|down_1|NZ_CP022244.1_643120_644320_+	PRK12440, PRK12440, acetate/propionate family kinase	NA|599aa|down_2|NZ_CP022244.1_644496_646293_+	cd00338, Ser_Recombinase, Serine Recombinase family, catalytic domain; a DNA binding domain may be present either N- or C-terminal to the catalytic domain	NA|182aa|down_3|NZ_CP022244.1_647313_647859_+	NA	NA|463aa|down_4|NZ_CP022244.1_647848_649237_+	pfam03432, Relaxase, Relaxase/Mobilisation nuclease domain	NA|256aa|down_5|NZ_CP022244.1_649546_650314_+	NA	NA|66aa|down_6|NZ_CP022244.1_650470_650668_+	NA	NA|124aa|down_7|NZ_CP022244.1_650798_651170_+	COG4190, COG4190, Predicted transcriptional regulator [Transcription]	NA|334aa|down_8|NZ_CP022244.1_651400_652402_-	NA	NA|876aa|down_9|NZ_CP022244.1_652648_655276_-	pfam13166, AAA_13, AAA domain
GCF_003351885.1_ASM335188v1	NZ_CP022245	Vibrio parahaemolyticus strain PB1937 plasmid p1937-1, complete sequence	1	24457-24609	1	CRISPRCasFinder	no			Orphan	TTGTTTTTCTTGTTTTTCTTGTTTTTCTTGTTTT	34	1	2	24553-24575|24553-24575	NZ_CP022245.1_24589-24611|NZ_CP022245.1_24598-24620	NA	2	2	Orphan	cas3,DinG,csa3,cas5f,cas6f,csx1,DEDDh,PD-DExK,WYL	NA|51aa|up_2|NZ_CP022245.1_18861_19014_-,NA|107aa|down_1|NZ_CP022245.1_25315_25636_+,NA|275aa|down_4|NZ_CP022245.1_28501_29326_-,NA|222aa|down_6|NZ_CP022245.1_32022_32688_-,NA|410aa|down_7|NZ_CP022245.1_32668_33898_-	NA|291aa|up_9|NZ_CP022245.1_11100_11973_-	TIGR02775, probable_conjugal_transfer_protein_TrbG, P-type conjugative transfer protein TrbG	NA|225aa|up_8|NZ_CP022245.1_11981_12656_-	COG3701, TrbF, Type IV secretory pathway, TrbF components [Intracellular trafficking and secretion]	NA|436aa|up_7|NZ_CP022245.1_12685_13993_-	TIGR02783, probable_conjugal_transfer_protein_TrbL, P-type conjugative transfer protein TrbL	NA|253aa|up_6|NZ_CP022245.1_14946_15705_-	TIGR02780, TrbJ_protein, P-type conjugative transfer protein TrbJ	NA|805aa|up_5|NZ_CP022245.1_15701_18116_-	PRK13891, PRK13891, conjugal transfer protein TrbE; Provisional	NA|105aa|up_4|NZ_CP022245.1_18156_18471_-	PRK13823, PRK13823, conjugal transfer protein TrbD; Provisional	NA|110aa|up_3|NZ_CP022245.1_18481_18811_-	PRK13892, PRK13892, conjugal transfer protein TrbC; Provisional	NA|51aa|up_2|NZ_CP022245.1_18861_19014_-	NA	NA|280aa|up_1|NZ_CP022245.1_20279_21119_+	pfam04566, RNA_pol_Rpb2_4, RNA polymerase Rpb2, domain 4	NA|315aa|up_0|NZ_CP022245.1_23354_24299_-	PRK09956, PRK09956, ISNCY family transposase	NA|222aa|down_0|NZ_CP022245.1_24666_25332_+	PHA02518, PHA02518, ParA-like protein; Provisional	NA|107aa|down_1|NZ_CP022245.1_25315_25636_+	NA	NA|329aa|down_2|NZ_CP022245.1_26370_27357_+	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type	NA|225aa|down_3|NZ_CP022245.1_27410_28085_+	cd04458, CSP_CDS, Cold-Shock Protein (CSP) contains an S1-like cold-shock domain (CSD) that is found in eukaryotes, prokaryotes, and archaea	NA|275aa|down_4|NZ_CP022245.1_28501_29326_-	NA	NA|778aa|down_5|NZ_CP022245.1_29714_32048_-	pfam13476, AAA_23, AAA domain	NA|222aa|down_6|NZ_CP022245.1_32022_32688_-	NA	NA|410aa|down_7|NZ_CP022245.1_32668_33898_-	NA	NA|52aa|down_8|NZ_CP022245.1_34286_34442_-	pfam14319, Zn_Tnp_IS91, Transposase zinc-binding domain	NA|307aa|down_9|NZ_CP022245.1_35037_35958_-	pfam13737, DDE_Tnp_1_5, Transposase DDE domain
