assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_003351705.1_ASM335170v1	NZ_CP031248	Streptococcus pneumoniae strain M26365 chromosome, complete genome	1	419076-419155	1	CRISPRCasFinder	no		DEDDh,DinG,cas3,PrimPol	Orphan	TTCTGGTGTCTGCCACCGCTTGGCCC	26	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,cas3,PrimPol	NA|74aa|up_5|NZ_CP031248.1_414908_415130_-,NA|51aa|up_3|NZ_CP031248.1_416400_416553_-,NA|285aa|down_3|NZ_CP031248.1_424798_425653_-,NA|81aa|down_4|NZ_CP031248.1_425669_425912_-,NA|163aa|down_6|NZ_CP031248.1_427809_428298_-,NA|100aa|down_7|NZ_CP031248.1_428287_428587_-,NA|78aa|down_9|NZ_CP031248.1_429509_429743_-	NA|726aa|up_9|NZ_CP031248.1_409202_411380_-	COG4372, COG4372, Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]	NA|816aa|up_8|NZ_CP031248.1_411382_413830_-	pfam12846, AAA_10, AAA-like domain	NA|169aa|up_7|NZ_CP031248.1_413813_414320_-	pfam12648, TcpE, TcpE family	NA|166aa|up_6|NZ_CP031248.1_414294_414792_-	pfam07275, ArdA, Antirestriction protein (ArdA)	NA|74aa|up_5|NZ_CP031248.1_414908_415130_-	NA	NA|402aa|up_4|NZ_CP031248.1_415172_416378_-	pfam02486, Rep_trans, Replication initiation factor	NA|51aa|up_3|NZ_CP031248.1_416400_416553_-	NA	NA|462aa|up_2|NZ_CP031248.1_416555_417941_-	COG1674, FtsK, DNA segregation ATPase FtsK/SpoIIIE and related proteins [Cell division and chromosome partitioning]	NA|129aa|up_1|NZ_CP031248.1_417969_418356_-	pfam06125, DUF961, Bacterial protein of unknown function (DUF961)	NA|105aa|up_0|NZ_CP031248.1_418371_418686_-	pfam06125, DUF961, Bacterial protein of unknown function (DUF961)	NA|938aa|down_0|NZ_CP031248.1_419252_422066_-	pfam18013, Phage_lysozyme2, Phage tail lysozyme	NA|772aa|down_1|NZ_CP031248.1_422077_424393_-	TIGR02746, hypothetical_protein, type-IV secretion system protein TraC	NA|120aa|down_2|NZ_CP031248.1_424385_424745_-	pfam12666, PrgI, PrgI family protein	NA|285aa|down_3|NZ_CP031248.1_424798_425653_-	NA	NA|81aa|down_4|NZ_CP031248.1_425669_425912_-	NA	NA|626aa|down_5|NZ_CP031248.1_425932_427810_-	pfam02534, T4SS-DNA_transf, Type IV secretory system Conjugative DNA transfer	NA|163aa|down_6|NZ_CP031248.1_427809_428298_-	NA	NA|100aa|down_7|NZ_CP031248.1_428287_428587_-	NA	NA|196aa|down_8|NZ_CP031248.1_428919_429507_-	pfam02517, Abi, CAAX protease self-immunity	NA|78aa|down_9|NZ_CP031248.1_429509_429743_-	NA
GCF_003351705.1_ASM335170v1	NZ_CP031248	Streptococcus pneumoniae strain M26365 chromosome, complete genome	2	1387670-1387765	2	CRISPRCasFinder	no		DEDDh,DinG,cas3,PrimPol	Orphan	TTATATATAAAAATTTTACACATT	24	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,cas3,PrimPol	NA|123aa|up_9|NZ_CP031248.1_1378540_1378909_-,NA|107aa|up_8|NZ_CP031248.1_1379672_1379993_+,NA|74aa|down_9|NZ_CP031248.1_1397005_1397227_-	NA|123aa|up_9|NZ_CP031248.1_1378540_1378909_-	NA	NA|107aa|up_8|NZ_CP031248.1_1379672_1379993_+	NA	NA|191aa|up_7|NZ_CP031248.1_1380045_1380618_-	cd00118, LysM, Lysin Motif is a small domain involved in binding peptidoglycan	NA|224aa|up_6|NZ_CP031248.1_1380859_1381531_+	COG1760, SdaA, L-serine deaminase [Amino acid transport and metabolism]	NA|291aa|up_5|NZ_CP031248.1_1381539_1382412_+	TIGR00718, Probable_L-serine_dehydratase_alpha_chain, L-serine dehydratase, iron-sulfur-dependent, alpha subunit	NA|211aa|up_4|NZ_CP031248.1_1382433_1383066_+	cd04302, HAD_5NT, haloacid dehalogenase (HAD)-like 5'-nucleotidases similar to the Pseudomonas aeruginosa PA0065	NA|77aa|up_3|NZ_CP031248.1_1383115_1383346_+	PHA02982, PHA02982, hypothetical protein; Provisional	NA|617aa|up_2|NZ_CP031248.1_1383370_1385221_-	COG1086, COG1086, Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]	NA|386aa|up_1|NZ_CP031248.1_1385262_1386420_-	cd02525, Succinoglycan_BP_ExoA, ExoA is involved in the biosynthesis of succinoglycan	NA|389aa|up_0|NZ_CP031248.1_1386477_1387644_+	COG2807, CynX, Cyanate permease [Inorganic ion transport and metabolism]	NA|109aa|down_0|NZ_CP031248.1_1387782_1388109_+	COG1695, COG1695, Predicted transcriptional regulators [Transcription]	NA|198aa|down_1|NZ_CP031248.1_1388095_1388689_+	COG4709, COG4709, Predicted membrane protein [Function unknown]	NA|304aa|down_2|NZ_CP031248.1_1388681_1389593_+	pfam13349, DUF4097, Putative adhesin	NA|355aa|down_3|NZ_CP031248.1_1389654_1390719_+	pfam10310, DUF5427, Family of unknown function (DUF5427)	NA|287aa|down_4|NZ_CP031248.1_1390895_1391756_-	pfam14132, DUF4299, Domain of unknown function (DUF4299)	NA|329aa|down_5|NZ_CP031248.1_1391877_1392864_-	PRK00142, PRK00142, rhodanese-related sulfurtransferase	NA|492aa|down_6|NZ_CP031248.1_1393135_1394611_-	pfam12010, DUF3502, Domain of unknown function (DUF3502)	NA|308aa|down_7|NZ_CP031248.1_1394820_1395744_-	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]	NA|310aa|down_8|NZ_CP031248.1_1395757_1396687_-	COG4209, LplB, ABC-type polysaccharide transport system, permease component [Carbohydrate transport and metabolism]	NA|74aa|down_9|NZ_CP031248.1_1397005_1397227_-	NA
GCF_003351705.1_ASM335170v1	NZ_CP031248	Streptococcus pneumoniae strain M26365 chromosome, complete genome	3	1975910-1975993	3	CRISPRCasFinder	no		DEDDh,DinG,cas3,PrimPol	Orphan	AAAAATGAAACGTTTCAAAAAAGA	24	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,cas3,PrimPol	NA,NA|138aa|down_4|NZ_CP031248.1_1981187_1981601_+,NA|100aa|down_5|NZ_CP031248.1_1981837_1982137_+,NA|74aa|down_6|NZ_CP031248.1_1982190_1982412_+,NA|88aa|down_8|NZ_CP031248.1_1984295_1984559_+,NA|346aa|down_9|NZ_CP031248.1_1984683_1985721_+	NA|283aa|up_9|NZ_CP031248.1_1967904_1968753_+	pfam03781, FGE-sulfatase, Sulfatase-modifying factor enzyme 1	NA|257aa|up_8|NZ_CP031248.1_1968767_1969538_+	pfam01925, TauE, Sulfite exporter TauE/SafE	NA|96aa|up_7|NZ_CP031248.1_1969815_1970103_-	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]	NA|68aa|up_6|NZ_CP031248.1_1970688_1970892_-	COG3237, COG3237, Uncharacterized protein conserved in bacteria [Function unknown]	NA|203aa|up_5|NZ_CP031248.1_1970922_1971531_-	COG1302, COG1302, Uncharacterized protein conserved in bacteria [Function unknown]	NA|57aa|up_4|NZ_CP031248.1_1971569_1971740_-	COG5547, COG5547, Small integral membrane protein [Function unknown]	NA|189aa|up_3|NZ_CP031248.1_1971751_1972318_-	NF033218, anchor_AmaP, alkaline shock response membrane anchor protein AmaP	NA|55aa|up_2|NZ_CP031248.1_1972401_1972566_-	COG2261, COG2261, Predicted membrane protein [Function unknown]	NA|494aa|up_1|NZ_CP031248.1_1973008_1974490_+	pfam08270, PRD_Mga, M protein trans-acting positive regulator (MGA) PRD domain	NA|334aa|up_0|NZ_CP031248.1_1974851_1975853_+	COG1609, PurR, Transcriptional regulators [Transcription]	NA|306aa|down_0|NZ_CP031248.1_1976000_1976918_+	COG4209, LplB, ABC-type polysaccharide transport system, permease component [Carbohydrate transport and metabolism]	NA|297aa|down_1|NZ_CP031248.1_1976928_1977819_+	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]	NA|539aa|down_2|NZ_CP031248.1_1977847_1979464_+	cd13581, PBP2_AlgQ_like_2, Periplasmic-binding component of alginate-specific ABC uptake system-like; contains the type 2 periplasmic binding fold	NA|440aa|down_3|NZ_CP031248.1_1979473_1980793_+	COG1621, SacC, Beta-fructosidases (levanase/invertase) [Carbohydrate transport and metabolism]	NA|138aa|down_4|NZ_CP031248.1_1981187_1981601_+	NA	NA|100aa|down_5|NZ_CP031248.1_1981837_1982137_+	NA	NA|74aa|down_6|NZ_CP031248.1_1982190_1982412_+	NA	NA|439aa|down_7|NZ_CP031248.1_1982627_1983944_+	COG1674, FtsK, DNA segregation ATPase FtsK/SpoIIIE and related proteins [Cell division and chromosome partitioning]	NA|88aa|down_8|NZ_CP031248.1_1984295_1984559_+	NA	NA|346aa|down_9|NZ_CP031248.1_1984683_1985721_+	NA
