assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_003351625.1_ASM335162v1	NZ_CP031238	Haemophilus haemolyticus strain M28486 chromosome, complete genome	1	184272-184396	1	CRISPRCasFinder	no		cas3,DEDDh,DinG,cas5,cas8c,cas7,cas4,cas1,cas2,WYL	Orphan	CCGCATTTACCTTCTGCGGCTTT	23	0	0	NA	NA	NA	2	2	Orphan	cas3,DEDDh,DinG,cas5,cas8c,cas7,cas4,cas1,cas2,WYL	NA,NA	NA|279aa|up_9|NZ_CP031238.1_171990_172827_+	PRK06027, purU, formyltetrahydrofolate deformylase; Reviewed	NA|433aa|up_8|NZ_CP031238.1_172826_174125_+	PRK02427, PRK02427, 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional	NA|447aa|up_7|NZ_CP031238.1_174208_175549_-	PRK13342, PRK13342, recombination factor protein RarA; Reviewed	NA|206aa|up_6|NZ_CP031238.1_175609_176227_-	TIGR00547, Outer-membrane_lipoprotein_carrier_protein, periplasmic chaperone LolA	NA|924aa|up_5|NZ_CP031238.1_176244_179016_-	PRK10263, PRK10263, DNA translocase FtsK; Provisional	NA|160aa|up_4|NZ_CP031238.1_179017_179497_-	PRK11169, PRK11169, leucine-responsive transcriptional regulator Lrp	NA|459aa|up_3|NZ_CP031238.1_179619_180996_-	TIGR00416, DNA_repair_protein_RadA_homolog, DNA repair protein RadA	NA|346aa|up_2|NZ_CP031238.1_181121_182159_-	COG3025, COG3025, Uncharacterized conserved protein [Function unknown]	NA|239aa|up_1|NZ_CP031238.1_182557_183274_-	COG3219, COG3219, Uncharacterized protein conserved in bacteria [Function unknown]	NA|307aa|up_0|NZ_CP031238.1_183263_184184_-	COG3220, COG3220, Uncharacterized protein conserved in bacteria [Function unknown]	NA|152aa|down_0|NZ_CP031238.1_184568_185024_-	COG2259, COG2259, Predicted membrane protein [Function unknown]	NA|227aa|down_1|NZ_CP031238.1_185213_185894_+	TIGR00153, UPF0111_protein_MTH_1689, TIGR00153 family protein	NA|421aa|down_2|NZ_CP031238.1_185918_187181_+	pfam01384, PHO4, Phosphate transporter family	NA|204aa|down_3|NZ_CP031238.1_187248_187860_+	COG3103, COG3103, SH3 domain protein [Signal transduction mechanisms]	NA|417aa|down_4|NZ_CP031238.1_187866_189117_+	PRK10885, cca, multifunctional CCA addition/repair protein	NA|207aa|down_5|NZ_CP031238.1_189188_189809_+	TIGR00548, Outer-membrane_lipoprotein_lolB_precursor	NA|318aa|down_6|NZ_CP031238.1_189808_190762_+	PRK00343, ipk, 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional	NA|316aa|down_7|NZ_CP031238.1_190763_191711_+	PRK01259, PRK01259, ribose-phosphate diphosphokinase	NA|396aa|down_8|NZ_CP031238.1_191793_192981_-	PRK05912, PRK05912, tyrosyl-tRNA synthetase; Validated	NA|239aa|down_9|NZ_CP031238.1_193179_193896_-	PRK00347, PRK00347, DNA/RNA nuclease SfsA
GCF_003351625.1_ASM335162v1	NZ_CP031238	Haemophilus haemolyticus strain M28486 chromosome, complete genome	2	1204030-1204462	1,2,1	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas5,cas8c,cas7,cas4,cas1,cas2,WYL	cas3,DEDDh,DinG,cas5,cas8c,cas7,cas4,cas1,cas2,WYL	Type I-C,Type I-U, Type I-U?	GCAGCCGCCTTCGCGCGGCTGTGTGTTGAAACCA,GCAGCCGCCTTCGCGCGGCTGTGTGTTGAAAC,GCAGCCGCCTTCGCGCGGCTGTGTGTTGAAAC	34,32,32	0	0	NA	NA	NA:NA:NA	5,6,6	6	TypeI-C,TypeI-U,TypeI-U?	cas3,DEDDh,DinG,cas5,cas8c,cas7,cas4,cas1,cas2,WYL	NA|88aa|up_3|NZ_CP031238.1_1201175_1201439_+,NA|314aa|up_2|NZ_CP031238.1_1201442_1202384_+,NA|254aa|down_4|NZ_CP031238.1_1209841_1210603_-,NA|104aa|down_5|NZ_CP031238.1_1210568_1210880_-,NA|546aa|down_7|NZ_CP031238.1_1211287_1212925_-	cas3|764aa|up_9|NZ_CP031238.1_1193269_1195561_+	cd17930, DEXHc_cas3, DEXH/Q-box helicase domain of Cas3	NA|441aa|up_8|NZ_CP031238.1_1195657_1196980_+	PRK02224, PRK02224, DNA double-strand break repair Rad50 ATPase	cas5|227aa|up_7|NZ_CP031238.1_1197142_1197823_+	cd09752, Cas5_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas8c|593aa|up_6|NZ_CP031238.1_1197819_1199598_+	cd09757, Cas8c_I-C, CRISPR/Cas system-associated protein Cas8c	cas7|289aa|up_5|NZ_CP031238.1_1199609_1200476_+	pfam05107, Cas_Cas7, CRISPR-associated protein Cas7	cas4|219aa|up_4|NZ_CP031238.1_1200493_1201150_+	TIGR00372, conserved_hypothetical_protein, CRISPR-associated protein Cas4	NA|88aa|up_3|NZ_CP031238.1_1201175_1201439_+	NA	NA|314aa|up_2|NZ_CP031238.1_1201442_1202384_+	NA	cas1|338aa|up_1|NZ_CP031238.1_1202527_1203541_+	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG	cas2|98aa|up_0|NZ_CP031238.1_1203544_1203838_+	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	NA|673aa|down_0|NZ_CP031238.1_1204631_1206650_-	PRK07956, ligA, NAD-dependent DNA ligase LigA; Validated	NA|329aa|down_1|NZ_CP031238.1_1206760_1207747_-	PRK01741, PRK01741, cell division protein ZipA; Provisional	NA|273aa|down_2|NZ_CP031238.1_1207899_1208718_+	PRK04949, PRK04949, putative sulfate transport protein CysZ; Validated	NA|317aa|down_3|NZ_CP031238.1_1208817_1209768_+	TIGR01139, Cysteine_synthase, cysteine synthase A	NA|254aa|down_4|NZ_CP031238.1_1209841_1210603_-	NA	NA|104aa|down_5|NZ_CP031238.1_1210568_1210880_-	NA	NA|98aa|down_6|NZ_CP031238.1_1211004_1211298_-	pfam03692, CxxCxxCC, Putative zinc- or iron-chelating domain	NA|546aa|down_7|NZ_CP031238.1_1211287_1212925_-	NA	NA|357aa|down_8|NZ_CP031238.1_1212972_1214043_-	PRK13875, PRK13875, conjugal transfer protein TrbL; Provisional	NA|231aa|down_9|NZ_CP031238.1_1214077_1214770_-	COG4735, COG4735, Uncharacterized protein conserved in bacteria [Function unknown]
GCF_003351625.1_ASM335162v1	NZ_CP031238	Haemophilus haemolyticus strain M28486 chromosome, complete genome	3	1592751-1592899	3	CRISPRCasFinder	no	DEDDh	cas3,DEDDh,DinG,cas5,cas8c,cas7,cas4,cas1,cas2,WYL	Unclear	TTGGAGCGGGAAACGAGGCTCGAACTCGCGACCCCGACCTTGGCAAGGT	49	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,cas5,cas8c,cas7,cas4,cas1,cas2,WYL	NA|128aa|up_8|NZ_CP031238.1_1581781_1582165_+,NA	NA|278aa|up_9|NZ_CP031238.1_1580886_1581720_+	PRK11103, PRK11103, PTS mannose transporter subunit IID	NA|128aa|up_8|NZ_CP031238.1_1581781_1582165_+	NA	NA|445aa|up_7|NZ_CP031238.1_1582234_1583569_-	PRK05370, PRK05370, argininosuccinate synthase; Validated	NA|291aa|up_6|NZ_CP031238.1_1583745_1584618_-	PRK13961, PRK13961, phosphoribosylaminoimidazole-succinocarboxamide synthase; Provisional	NA|786aa|up_5|NZ_CP031238.1_1584786_1587144_-	TIGR02071, Includes:_Penicillin-insensitive_transglycosylase, penicillin-binding protein 1B	NA|118aa|up_4|NZ_CP031238.1_1587150_1587504_-	COG3112, COG3112, Uncharacterized protein conserved in bacteria [Function unknown]	NA|115aa|up_3|NZ_CP031238.1_1587505_1587850_-	PRK13623, PRK13623, iron-sulfur cluster insertion protein ErpA; Provisional	NA|269aa|up_2|NZ_CP031238.1_1587986_1588793_+	PRK05716, PRK05716, methionine aminopeptidase; Validated	NA|864aa|up_1|NZ_CP031238.1_1588886_1591478_+	PRK01759, glnD, bifunctional uridylyltransferase/uridylyl-removing protein GlnD	NA|356aa|up_0|NZ_CP031238.1_1591553_1592621_+	TIGR02380, ECA_wecA, undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase	DEDDh|183aa|down_0|NZ_CP031238.1_1593020_1593569_-	PRK05359, PRK05359, oligoribonuclease; Provisional	NA|347aa|down_1|NZ_CP031238.1_1593639_1594680_+	PRK12288, PRK12288, small ribosomal subunit biogenesis GTPase RsgA	NA|86aa|down_2|NZ_CP031238.1_1594842_1595100_+	PRK10850, PRK10850, phosphocarrier protein Hpr	NA|576aa|down_3|NZ_CP031238.1_1595178_1596906_+	PRK11177, PRK11177, phosphoenolpyruvate-protein phosphotransferase PtsI	NA|167aa|down_4|NZ_CP031238.1_1596966_1597467_+	PRK09439, PRK09439, PTS system glucose-specific transporter subunit; Provisional	NA|400aa|down_5|NZ_CP031238.1_1597560_1598760_+	cd07011, cupin_PMI_type_I_N, type I phosphomannose isomerase in eukaryotes and bacteria, N-terminal cupin domain	NA|306aa|down_6|NZ_CP031238.1_1598839_1599757_+	COG0330, HflC, Membrane protease subunits, stomatin/prohibitin homologs [Posttranslational modification, protein turnover, chaperones]	NA|152aa|down_7|NZ_CP031238.1_1599840_1600296_+	COG1585, COG1585, Membrane protein implicated in regulation of membrane protease activity [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]	NA|256aa|down_8|NZ_CP031238.1_1600387_1601155_-	PRK10676, PRK10676, DNA-binding transcriptional regulator ModE; Provisional	NA|255aa|down_9|NZ_CP031238.1_1601391_1602156_+	PRK10677, modA, molybdate transporter periplasmic protein; Provisional
