The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP031237	Haemophilus influenzae strain M12125 chromosome, complete genome	1804746	840278	881920	1804746	holin,protease,capsid,terminase,tRNA,tail	Aggregatibacter_phage(24.14%)	49	NA	NA
WP_005652745.1|840278_840731_+|protease	ClpXP protease specificity-enhancing factor	protease	A0A1S5R3H3	Pseudomonas_phage	56.1	2.5e-25
WP_005650455.1|840766_842644_-	1-deoxy-D-xylulose-5-phosphate synthase	NA	NA	NA	NA	NA
WP_061724061.1|842685_843576_-	(2E,6E)-farnesyl diphosphate synthase	NA	NA	NA	NA	NA
WP_005687136.1|843575_843830_-	exodeoxyribonuclease VII small subunit	NA	NA	NA	NA	NA
WP_114890325.1|843988_845446_+|tRNA	tRNA 4-thiouridine(8) synthase ThiI	tRNA	NA	NA	NA	NA
WP_005650459.1|845460_845781_+	YqcC family protein	NA	NA	NA	NA	NA
WP_114890326.1|845774_846494_+|tRNA	tRNA pseudouridine(65) synthase TruC	tRNA	NA	NA	NA	NA
WP_005628875.1|846486_846645_+	YoaH family protein	NA	NA	NA	NA	NA
WP_114890327.1|846793_847012_+	cold shock domain-containing protein CspD	NA	Q9AZD3	Lactococcus_phage	50.0	2.4e-10
WP_005631703.1|847169_847646_-|tRNA	Cys-tRNA(Pro) deacylase	tRNA	NA	NA	NA	NA
WP_114890328.1|847704_848658_+	oxidoreductase	NA	NA	NA	NA	NA
WP_114890329.1|848840_849986_-	type IV pili	NA	A0A2H4J4K4	uncultured_Caudovirales_phage	55.3	4.8e-41
WP_114890330.1|849997_852022_-	N-6 DNA methylase	NA	A0A2H4JBT5	uncultured_Caudovirales_phage	64.7	2.5e-250
WP_114890331.1|852286_853096_-	tryptophan synthase subunit alpha	NA	NA	NA	NA	NA
WP_114890332.1|853095_854289_-	tryptophan synthase subunit beta	NA	NA	NA	NA	NA
WP_065245319.1|854307_855066_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_114890333.1|855245_856280_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	45.9	1.3e-74
WP_075985270.1|856334_856973_+	phosphoribosylglycinamide formyltransferase	NA	E3SNR5	Prochlorococcus_phage	39.4	2.6e-28
WP_114890334.1|857056_857893_-	DUF4198 domain-containing protein	NA	NA	NA	NA	NA
WP_114890335.1|858090_859020_-	universal stress protein UspE	NA	NA	NA	NA	NA
WP_114890336.1|859141_859915_-	FNR family transcription factor	NA	NA	NA	NA	NA
WP_114890337.1|860637_860916_-	hypothetical protein	NA	NA	NA	NA	NA
WP_162790516.1|861207_861774_-	hypothetical protein	NA	A0A0M3LQ72	Mannheimia_phage	68.9	6.5e-47
WP_114890338.1|862081_862369_-	hypothetical protein	NA	NA	NA	NA	NA
WP_114890339.1|862746_862941_+	ribbon-helix-helix protein, CopG family	NA	A0A0M3LQV3	Mannheimia_phage	58.3	8.2e-10
WP_005692473.1|863422_863632_-	hypothetical protein	NA	NA	NA	NA	NA
WP_114890340.1|863645_863807_+	DUF1508 domain-containing protein	NA	A0A2P1N580	Mycobacterium_phage	65.0	2.2e-08
WP_114890341.1|864229_864604_-	ASCH domain-containing protein	NA	Q938L5	Temperate_phage	46.7	3.7e-22
WP_114890342.1|865671_866328_-	LexA family transcriptional regulator	NA	A0A0M3LSL8	Mannheimia_phage	58.4	1.2e-65
WP_015702309.1|866685_866982_+	hypothetical protein	NA	Q7Y5W3	Haemophilus_phage	70.4	1.5e-31
WP_105894216.1|867029_867698_+	hypothetical protein	NA	D0UIL6	Aggregatibacter_phage	52.1	2.0e-55
WP_114890343.1|867694_868417_+	helix-turn-helix domain-containing protein	NA	D0UIL5	Aggregatibacter_phage	68.8	4.1e-62
WP_114890344.1|868413_869034_+	replication P	NA	A0A0M3LS65	Mannheimia_phage	39.7	1.0e-29
WP_005633909.1|869030_869255_+	hypothetical protein	NA	A0A0M3LR43	Mannheimia_phage	47.9	1.1e-10
WP_114890345.1|869798_870341_+	recombination protein NinG	NA	D0UIK8	Aggregatibacter_phage	62.1	3.3e-56
WP_114890346.1|870337_870709_+	hypothetical protein	NA	NA	NA	NA	NA
WP_114890347.1|870766_870952_-	hypothetical protein	NA	A0A0M3LQV3	Mannheimia_phage	45.5	1.5e-05
WP_162790517.1|871391_872195_+	hypothetical protein	NA	D0UIK6	Aggregatibacter_phage	48.3	4.6e-62
WP_114890349.1|872949_873306_+|holin	phage holin, lambda family	holin	NA	NA	NA	NA
WP_114890350.1|873274_873877_+	glycoside hydrolase family 19 protein	NA	Q7Y5V0	Haemophilus_phage	53.4	1.8e-55
WP_114890351.1|873869_874193_+	DUF2570 family protein	NA	Q7Y5U9	Haemophilus_phage	61.1	2.8e-23
WP_114890352.1|874494_875016_+	Rha family transcriptional regulator	NA	A0A0P0HSR5	Acinetobacter_phage	34.3	1.4e-19
WP_114890353.1|875025_875598_+|terminase	terminase small subunit	terminase	Q7Y5U8	Haemophilus_phage	42.5	6.2e-21
WP_114890354.1|875617_876997_+|terminase	phage terminase large subunit	terminase	D0UIJ7	Aggregatibacter_phage	88.9	1.1e-246
WP_114890355.1|876998_878330_+	DUF1073 domain-containing protein	NA	D0UIJ6	Aggregatibacter_phage	86.3	1.0e-215
WP_162790539.1|878358_879540_+|capsid	minor capsid protein	capsid	Q7Y5U5	Haemophilus_phage	76.3	7.1e-88
WP_114890357.1|879680_880781_+	DUF2213 domain-containing protein	NA	Q7Y5U2	Haemophilus_phage	86.5	3.7e-139
WP_114890358.1|880793_881249_+	DUF2612 domain-containing protein	NA	D0UIH4	Aggregatibacter_phage	77.2	1.3e-58
WP_114890359.1|881281_881920_+|tail	tail fiber protein	tail	Q94MY0	Haemophilus_virus	52.8	4.9e-35
>prophage 2
NZ_CP031237	Haemophilus influenzae strain M12125 chromosome, complete genome	1804746	1106792	1115306	1804746		uncultured_Caudovirales_phage(16.67%)	8	NA	NA
WP_112071454.1|1106792_1107476_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	50.2	8.6e-54
WP_005663812.1|1107468_1107894_+	6-carboxytetrahydropterin synthase QueD	NA	A0A1U9WRB3	Streptococcus_virus	42.7	1.3e-20
WP_005686506.1|1107894_1108530_+	7-carboxy-7-deazaguanine synthase QueE	NA	S4TZT1	uncultured_phage	30.3	8.7e-16
WP_162790543.1|1109144_1111325_+	DNA helicase II	NA	A7KV33	Bacillus_phage	37.3	2.5e-115
WP_162691293.1|1111414_1112416_+	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_015702107.1|1112430_1113318_+	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_114890456.1|1113327_1114320_+	dipeptide ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	30.4	6.7e-15
WP_005663823.1|1114322_1115306_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.8	1.8e-20
>prophage 3
NZ_CP031237	Haemophilus influenzae strain M12125 chromosome, complete genome	1804746	1245900	1254969	1804746		Escherichia_phage(83.33%)	9	NA	NA
WP_114890501.1|1245900_1247745_+	ABC transporter ATP-binding protein	NA	F2Y2R6	Organic_Lake_phycodnavirus	29.3	4.8e-22
WP_015702037.1|1247869_1248148_-	heavy-metal-associated domain-containing protein	NA	NA	NA	NA	NA
WP_005651689.1|1248156_1248519_-	membrane protein	NA	NA	NA	NA	NA
WP_042611482.1|1248493_1249603_-	transglutaminase family protein	NA	NA	NA	NA	NA
WP_114890502.1|1249856_1252277_+	molybdopterin-dependent oxidoreductase	NA	A0A077SK27	Escherichia_phage	50.4	2.4e-223
WP_005647791.1|1252287_1252905_+	dimethylsulfoxide reductase subunit B	NA	A0A077SL61	Escherichia_phage	57.3	7.5e-73
WP_005690803.1|1252906_1253746_+	dimethyl sulfoxide reductase anchor subunit	NA	A0A077SK59	Escherichia_phage	31.4	7.2e-18
WP_114890503.1|1253857_1254469_+	Tat proofreading chaperone DmsD	NA	A0A077SLS7	Escherichia_phage	31.9	8.6e-21
WP_005656004.1|1254468_1254969_+	ferredoxin-type protein NapF	NA	A0A077SLP0	Escherichia_phage	32.0	3.2e-13
