The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP031254	Haemophilus influenzae strain M25588 chromosome, complete genome	1848871	0	9407	1848871		Planktothrix_phage(40.0%)	8	NA	NA
WP_041175009.1|761_2942_+	DNA helicase II	NA	A7KV33	Bacillus_phage	37.6	8.7e-116
WP_032824110.1|3031_4033_+	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_015702107.1|4047_4935_+	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_005694258.1|4944_5937_+	dipeptide ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	30.8	2.0e-14
WP_005663823.1|5939_6923_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.8	1.8e-20
WP_103708066.1|6951_7758_-	DNA ligase	NA	A0A1X9VNU1	Mimivirus	31.0	2.3e-29
WP_005663828.1|7964_8549_+	D-sedoheptulose 7-phosphate isomerase	NA	NA	NA	NA	NA
WP_005653660.1|8675_9407_+	arginine ABC transporter ATP-binding protein ArtP	NA	G9BWD6	Planktothrix_phage	38.1	1.6e-29
>prophage 2
NZ_CP031254	Haemophilus influenzae strain M25588 chromosome, complete genome	1848871	13483	19749	1848871		Staphylococcus_phage(25.0%)	7	NA	NA
WP_071163232.1|13483_14638_-	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	63.2	1.8e-128
WP_071163231.1|14722_15304_-	anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	35.2	1.6e-29
WP_071163230.1|15345_16332_+	aminodeoxychorismate synthase component I	NA	NA	NA	NA	NA
WP_071163229.1|16331_16898_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005653635.1|16937_17282_-	DUF496 family protein	NA	NA	NA	NA	NA
WP_005653633.1|17472_18561_+	3-phosphoserine/phosphohydroxythreonine transaminase	NA	M1Q1P2	Streptococcus_phage	45.9	1.7e-83
WP_071163228.1|18648_19749_+	histidinol-phosphate transaminase	NA	A0A142C026	Faustovirus	27.6	3.8e-19
>prophage 3
NZ_CP031254	Haemophilus influenzae strain M25588 chromosome, complete genome	1848871	27215	32441	1848871		Bacillus_phage(50.0%)	4	NA	NA
WP_071163222.1|27215_28172_+	thioredoxin-disulfide reductase	NA	A0A1V0SIN1	Klosneuvirus	40.6	5.6e-59
WP_071163221.1|28234_29995_+	cysteine/glutathione ABC transporter permease/ATP-binding protein CydD	NA	W8CYL7	Bacillus_phage	23.3	2.3e-26
WP_071163220.1|29994_31725_+	cysteine/glutathione ABC transporter ATP-binding protein/permease CydC	NA	W8CYL7	Bacillus_phage	25.1	1.5e-22
WP_071163219.1|31973_32441_+	anaerobic ribonucleoside-triphosphate reductase-activating protein	NA	H6WXC9	Vibrio_phage	60.5	3.0e-50
>prophage 4
NZ_CP031254	Haemophilus influenzae strain M25588 chromosome, complete genome	1848871	38066	40164	1848871		Pithovirus(50.0%)	3	NA	NA
WP_005647567.1|38066_38792_+	LPS export ABC transporter ATP-binding protein	NA	W5SAS9	Pithovirus	31.3	1.8e-25
WP_005651843.1|38794_39289_+	PTS IIA-like nitrogen regulatory protein PtsN	NA	NA	NA	NA	NA
WP_015702081.1|39306_40164_+	RNase adapter RapZ	NA	A0A0R8VB27	Thermobifida_phage	27.1	5.8e-07
>prophage 5
NZ_CP031254	Haemophilus influenzae strain M25588 chromosome, complete genome	1848871	62543	63497	1848871		Prochlorococcus_phage(100.0%)	1	NA	NA
WP_071163205.1|62543_63497_-	transaldolase	NA	M4QQ61	Prochlorococcus_phage	32.5	1.3e-10
>prophage 6
NZ_CP031254	Haemophilus influenzae strain M25588 chromosome, complete genome	1848871	67372	69339	1848871		Bacillus_virus(50.0%)	2	NA	NA
WP_005647625.1|67372_68344_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	26.8	2.8e-13
WP_005657282.1|68340_69339_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	1.8e-23
>prophage 7
NZ_CP031254	Haemophilus influenzae strain M25588 chromosome, complete genome	1848871	73982	74909	1848871		Prochlorococcus_phage(100.0%)	1	NA	NA
WP_012055407.1|73982_74909_+	ADP-glyceromanno-heptose 6-epimerase	NA	R9S880	Prochlorococcus_phage	36.4	1.3e-36
>prophage 8
NZ_CP031254	Haemophilus influenzae strain M25588 chromosome, complete genome	1848871	79096	80608	1848871		Staphylococcus_phage(100.0%)	1	NA	NA
WP_012055403.1|79096_80608_+	D-xylose ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	31.1	9.9e-18
>prophage 9
NZ_CP031254	Haemophilus influenzae strain M25588 chromosome, complete genome	1848871	88565	93696	1848871		Lactococcus_phage(50.0%)	4	NA	NA
WP_005690723.1|88565_89516_-	cysteine synthase A	NA	A0A1W6JHY1	Lactococcus_phage	50.9	1.9e-67
WP_071163198.1|89614_90433_-	sulfate transporter CysZ	NA	NA	NA	NA	NA
WP_071163197.1|90585_91572_+	cell division protein ZipA	NA	NA	NA	NA	NA
WP_071163196.1|91683_93696_+	NAD-dependent DNA ligase LigA	NA	A0A289ZTZ3	Serratia_phage	47.9	4.4e-138
>prophage 10
NZ_CP031254	Haemophilus influenzae strain M25588 chromosome, complete genome	1848871	100867	103603	1848871		Planktothrix_phage(66.67%)	3	NA	NA
WP_071163190.1|100867_101506_-	cytochrome c biogenesis heme-transporting ATPase CcmA	NA	G9BWD6	Planktothrix_phage	26.6	7.2e-10
WP_005647694.1|101754_102390_+	superoxide dismutase [Mn]	NA	Q56AR7	Bacillus_thuringiensis_phage	57.0	9.8e-60
WP_071163189.1|102808_103603_+	phospholipid ABC transporter ATP-binding protein MlaF	NA	G9BWD6	Planktothrix_phage	31.9	2.3e-21
>prophage 11
NZ_CP031254	Haemophilus influenzae strain M25588 chromosome, complete genome	1848871	109246	112652	1848871		Planktothrix_phage(33.33%)	3	NA	NA
WP_071163186.1|109246_110014_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	43.5	6.5e-34
WP_071163185.1|110189_110870_+	nicotinamide riboside transporter PnuC	NA	U5J9C5	Bacillus_phage	35.7	3.9e-38
WP_071163184.1|111014_112652_-	CTP synthase (glutamine hydrolyzing)	NA	A0A1J0FA14	Only_Syngen_Nebraska_virus	51.7	7.7e-157
>prophage 12
NZ_CP031254	Haemophilus influenzae strain M25588 chromosome, complete genome	1848871	117110	121022	1848871		Catovirus(100.0%)	1	NA	NA
WP_071163182.1|117110_121022_+	ATP-dependent RNA helicase HrpA	NA	A0A1V0SBU4	Catovirus	26.9	2.3e-50
>prophage 13
NZ_CP031254	Haemophilus influenzae strain M25588 chromosome, complete genome	1848871	130370	133236	1848871		Chrysochromulina_ericina_virus(50.0%)	3	NA	NA
WP_071163178.1|130370_130964_+	ribonuclease HII	NA	A0A0N9QYD4	Chrysochromulina_ericina_virus	41.0	1.2e-24
WP_162790430.1|131176_131617_+	hypothetical protein	NA	NA	NA	NA	NA
WP_162790440.1|131853_133236_+	site-specific DNA-methyltransferase	NA	A0A2R3ZYF2	Campylobacter_phage	44.1	1.4e-71
>prophage 14
NZ_CP031254	Haemophilus influenzae strain M25588 chromosome, complete genome	1848871	137539	146608	1848871		Escherichia_phage(83.33%)	9	NA	NA
WP_071163173.1|137539_139384_+	ABC transporter ATP-binding protein	NA	F2Y2R6	Organic_Lake_phycodnavirus	29.3	4.8e-22
WP_071163172.1|139508_139787_-	heavy-metal-associated domain-containing protein	NA	NA	NA	NA	NA
WP_005651689.1|139795_140158_-	membrane protein	NA	NA	NA	NA	NA
WP_042611482.1|140132_141242_-	transglutaminase family protein	NA	NA	NA	NA	NA
WP_071163171.1|141495_143916_+	molybdopterin-dependent oxidoreductase	NA	A0A077SK27	Escherichia_phage	50.6	4.8e-224
WP_005647791.1|143926_144544_+	dimethylsulfoxide reductase subunit B	NA	A0A077SL61	Escherichia_phage	57.3	7.5e-73
WP_005690803.1|144545_145385_+	dimethyl sulfoxide reductase anchor subunit	NA	A0A077SK59	Escherichia_phage	31.4	7.2e-18
WP_005662894.1|145496_146108_+	Tat proofreading chaperone DmsD	NA	A0A077SLS7	Escherichia_phage	32.5	3.0e-21
WP_071163170.1|146107_146608_+	ferredoxin-type protein NapF	NA	A0A077SLP0	Escherichia_phage	32.4	3.8e-14
>prophage 15
NZ_CP031254	Haemophilus influenzae strain M25588 chromosome, complete genome	1848871	157244	157892	1848871		Planktothrix_phage(100.0%)	1	NA	NA
WP_005655984.1|157244_157892_-	thiamine ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	36.2	1.7e-22
>prophage 16
NZ_CP031254	Haemophilus influenzae strain M25588 chromosome, complete genome	1848871	165804	167229	1848871		Bodo_saltans_virus(100.0%)	1	NA	NA
WP_071163161.1|165804_167229_+	bifunctional cytidylyltransferase/SDR family oxidoreductase	NA	A0A2H4UTB4	Bodo_saltans_virus	30.0	9.1e-05
>prophage 17
NZ_CP031254	Haemophilus influenzae strain M25588 chromosome, complete genome	1848871	174657	177472	1848871	transposase	Macacine_betaherpesvirus(33.33%)	4	NA	NA
WP_080481773.1|174657_174897_-|transposase	IS3 family transposase	transposase	A0A2I6AZV9	Macacine_betaherpesvirus	59.4	3.8e-17
WP_015702010.1|175077_175443_-|transposase	transposase	transposase	A0A1B1P773	Bacillus_phage	37.5	1.8e-13
WP_071163155.1|175439_175814_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_071163154.1|176908_177472_-	aquaporin family protein	NA	M1HBN0	Acanthocystis_turfacea_Chlorella_virus	35.1	1.3e-18
>prophage 18
NZ_CP031254	Haemophilus influenzae strain M25588 chromosome, complete genome	1848871	181573	185281	1848871		Escherichia_phage(100.0%)	4	NA	NA
WP_005647883.1|181573_182206_-	aldolase	NA	A0A077SK32	Escherichia_phage	61.0	2.4e-66
WP_071163151.1|182202_183444_-	four-carbon acid sugar kinase family protein	NA	A0A077SLJ7	Escherichia_phage	54.3	1.9e-115
WP_005665973.1|183446_184352_-	NAD(P)-dependent oxidoreductase	NA	A0A077SLF7	Escherichia_phage	69.1	3.8e-105
WP_071163150.1|184522_185281_+	DeoR/GlpR transcriptional regulator	NA	A0A077SK06	Escherichia_phage	51.0	1.3e-63
>prophage 19
NZ_CP031254	Haemophilus influenzae strain M25588 chromosome, complete genome	1848871	194214	194475	1848871		Staphylococcus_phage(100.0%)	1	NA	NA
WP_005647910.1|194214_194475_-	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	51.3	3.9e-15
>prophage 20
NZ_CP031254	Haemophilus influenzae strain M25588 chromosome, complete genome	1848871	202884	209648	1848871		Rhizobium_phage(50.0%)	3	NA	NA
WP_071163140.1|202884_203985_+	DNA polymerase III subunit beta	NA	B4UTW9	Rhizobium_phage	32.4	2.8e-46
WP_071163139.1|203986_205066_+	DNA replication/repair protein RecF	NA	NA	NA	NA	NA
WP_114877175.1|205307_209648_+	autotransporter domain-containing protein	NA	Q9LA58	Enterobacterial_phage	32.3	1.4e-64
>prophage 21
NZ_CP031254	Haemophilus influenzae strain M25588 chromosome, complete genome	1848871	213035	214583	1848871		Micromonas_sp._RCC1109_virus(100.0%)	1	NA	NA
WP_071163134.1|213035_214583_-	2-isopropylmalate synthase	NA	E5EQ69	Micromonas_sp._RCC1109_virus	25.5	2.1e-10
>prophage 22
NZ_CP031254	Haemophilus influenzae strain M25588 chromosome, complete genome	1848871	218978	219464	1848871		Staphylococcus_phage(100.0%)	1	NA	NA
WP_071163132.1|218978_219464_+	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	47.7	3.7e-27
>prophage 23
NZ_CP031254	Haemophilus influenzae strain M25588 chromosome, complete genome	1848871	234822	253502	1848871	tRNA	Indivirus(22.22%)	19	NA	NA
WP_005647990.1|234822_235749_+	bifunctional riboflavin kinase/FAD synthetase	NA	A0A1V0SD03	Indivirus	31.9	4.1e-06
WP_071163126.1|235777_238603_+|tRNA	isoleucine--tRNA ligase	tRNA	A0A2P1ELB8	Moumouvirus	27.7	1.6e-85
WP_005627389.1|238720_239071_+	purine nucleoside phosphoramidase	NA	NA	NA	NA	NA
WP_005647993.1|239070_239421_+	DUF1425 domain-containing protein	NA	NA	NA	NA	NA
WP_071163125.1|239424_240477_+	beta-N-acetylhexosaminidase	NA	NA	NA	NA	NA
WP_071163124.1|240473_241652_+	23S rRNA (uracil(747)-C(5))-methyltransferase RlmC	NA	A0A2K5B251	Erysipelothrix_phage	26.9	1.0e-22
WP_005647998.1|242016_242691_-	cAMP-activated global transcriptional regulator CRP	NA	NA	NA	NA	NA
WP_005647999.1|242675_242927_-	YheU family protein	NA	NA	NA	NA	NA
WP_005648000.1|242948_243605_-	nucleoid occlusion factor SlmA	NA	NA	NA	NA	NA
WP_005631431.1|243608_244064_-	dUTP diphosphatase	NA	Q2NP83	Xanthomonas_phage	60.1	9.5e-49
WP_071163123.1|244111_245314_-	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	31.9	3.6e-39
WP_114877181.1|245476_246169_+	JAB domain-containing protein	NA	NA	NA	NA	NA
WP_005542826.1|246382_246619_+	50S ribosomal protein L28	NA	NA	NA	NA	NA
WP_005613503.1|246630_246801_+	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_071163121.1|247148_248513_+	diaminobutyrate--2-oxoglutarate transaminase	NA	A0A1V0SKB7	Klosneuvirus	26.5	1.4e-26
WP_048955043.1|248703_250239_+	aspartate aminotransferase family protein	NA	NA	NA	NA	NA
WP_114877183.1|250471_251287_+	DNA-formamidopyrimidine glycosylase	NA	G3MA33	Bacillus_virus	32.8	1.1e-28
WP_071163119.1|251360_252383_-	outer membrane-stress sensor serine endopeptidase DegS	NA	A0A1B1IT49	uncultured_Mediterranean_phage	28.4	1.1e-17
WP_071163118.1|252383_253502_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A1V0SE20	Indivirus	33.2	1.6e-49
>prophage 24
NZ_CP031254	Haemophilus influenzae strain M25588 chromosome, complete genome	1848871	264322	277294	1848871	tRNA,capsid	Staphylococcus_phage(14.29%)	13	NA	NA
WP_071163112.1|264322_265525_+	NAD(P)/FAD-dependent oxidoreductase	NA	A0A2H4PQX1	Staphylococcus_phage	37.5	9.7e-08
WP_071163111.1|265648_266959_+	phosphopyruvate hydratase	NA	A0A1X9I5Z8	Streptococcus_phage	59.2	1.7e-130
WP_042600726.1|267042_267462_+	DUF2251 domain-containing protein	NA	NA	NA	NA	NA
WP_071163110.1|267474_268056_+	hypothetical protein	NA	NA	NA	NA	NA
WP_071163109.1|268056_269238_+	glutathionylspermidine synthase family protein	NA	E5E3Y5	Acinetobacter_phage	45.1	6.6e-94
WP_071163108.1|269469_270996_-	catalase	NA	A0A2K9L0T1	Tupanvirus	47.3	3.6e-100
WP_071163107.1|271257_272166_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
WP_114877191.1|272224_272485_+	hypothetical protein	NA	NA	NA	NA	NA
WP_071163106.1|272832_273531_+	hypothetical protein	NA	R9TNR7	Vibrio_phage	44.6	1.3e-52
WP_071163105.1|273614_275681_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_071163104.1|276175_276484_+|capsid	major capsid protein	capsid	Q19UT3	Mannheimia_phage	43.6	1.1e-11
WP_071163103.1|276483_276708_+	hypothetical protein	NA	NA	NA	NA	NA
WP_006995583.1|277030_277294_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	A0A1S5NR91	Burkholderia_phage	43.0	5.4e-12
>prophage 25
NZ_CP031254	Haemophilus influenzae strain M25588 chromosome, complete genome	1848871	280421	283975	1848871	tRNA	Staphylococcus_phage(50.0%)	2	NA	NA
WP_071163099.1|280421_283007_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	43.5	3.5e-188
WP_005655860.1|283255_283975_+	di-trans,poly-cis-decaprenylcistransferase	NA	R9W0U9	Flavobacterium_phage	46.7	9.5e-27
>prophage 26
NZ_CP031254	Haemophilus influenzae strain M25588 chromosome, complete genome	1848871	292419	295660	1848871		Streptococcus_phage(50.0%)	3	NA	NA
WP_011272284.1|292419_293184_-	class I SAM-dependent methyltransferase	NA	A0A1X9I6N4	Streptococcus_phage	33.7	3.6e-32
WP_103708052.1|293284_295141_-	potassium transporter	NA	NA	NA	NA	NA
WP_010869085.1|295249_295660_-	8-oxo-dGTP diphosphatase MutT	NA	G8DF69	Emiliania_huxleyi_virus	29.2	5.3e-06
>prophage 27
NZ_CP031254	Haemophilus influenzae strain M25588 chromosome, complete genome	1848871	299799	304631	1848871		Vibrio_phage(33.33%)	6	NA	NA
WP_071163090.1|299799_300651_-	thymidylate synthase	NA	H9EB68	Vibrio_phage	79.5	1.5e-135
WP_071163089.1|300661_301468_-	prolipoprotein diacylglyceryl transferase	NA	NA	NA	NA	NA
WP_071163088.1|301476_302271_-	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
WP_114877195.1|302270_302861_-	RNA pyrophosphohydrolase	NA	NA	NA	NA	NA
WP_071163087.1|302941_304048_-	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	40.4	2.7e-65
WP_005648125.1|304148_304631_+	type 3 dihydrofolate reductase	NA	A0A076GDN3	Bacillus_phage	44.7	3.1e-34
>prophage 28
NZ_CP031254	Haemophilus influenzae strain M25588 chromosome, complete genome	1848871	308544	327253	1848871		Leptospira_phage(16.67%)	15	NA	NA
WP_162790431.1|308544_311625_-	efflux RND transporter permease subunit	NA	S5VTK5	Leptospira_phage	24.2	1.7e-56
WP_162790432.1|311642_312839_-	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_114877203.1|312870_313434_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_162790433.1|313675_314923_-	ATP-dependent RNA helicase RhlB	NA	A0A0N9Q9J4	Chrysochromulina_ericina_virus	29.4	7.9e-37
WP_015701917.1|315039_315246_-	DNA gyrase inhibitor YacG	NA	NA	NA	NA	NA
WP_114877207.1|315238_315859_-	dephospho-CoA kinase	NA	NA	NA	NA	NA
WP_005648164.1|315929_317195_-	serine hydroxymethyltransferase	NA	A0A240F3L3	Aeromonas_phage	52.5	7.9e-101
WP_114877209.1|317318_318608_-	phosphoribosylamine--glycine ligase	NA	NA	NA	NA	NA
WP_114877211.1|318702_320301_-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	50.3	5.5e-75
WP_071163083.1|320484_320895_-	DoxX family protein	NA	NA	NA	NA	NA
WP_114877213.1|321006_322746_-	protein-disulfide reductase DsbD	NA	NA	NA	NA	NA
WP_005651417.1|322937_323648_+	two-component system response regulator ArcA	NA	W8CYM9	Bacillus_phage	31.1	7.9e-26
WP_114877215.1|324046_325417_+	sodium:alanine symporter family protein	NA	NA	NA	NA	NA
WP_005651413.1|325475_326213_-	epoxyqueuosine reductase QueH	NA	NA	NA	NA	NA
WP_006995542.1|326263_327253_-	octaprenyl diphosphate synthase	NA	A0A1V0SE37	Indivirus	22.9	8.8e-07
>prophage 29
NZ_CP031254	Haemophilus influenzae strain M25588 chromosome, complete genome	1848871	330328	352374	1848871		Lactococcus_phage(22.22%)	17	NA	NA
WP_005670218.1|330328_330751_-	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	40.0	5.0e-20
WP_071163078.1|330760_332065_-	aminopeptidase PepB	NA	Q6GYZ8	Mycoplasma_phage	33.0	5.4e-28
WP_071163077.1|332141_333185_-	dTDP-glucose 4,6-dehydratase	NA	I7HTA3	Enterobacteria_phage	50.5	4.4e-89
WP_071163076.1|333271_334684_-	glutamate--ammonia ligase	NA	NA	NA	NA	NA
WP_114877217.1|334865_335837_+	CMP-Neu5Ac--lipooligosaccharide alpha 2-3 sialyltransferase	NA	NA	NA	NA	NA
WP_071163074.1|335963_337814_+	translational GTPase TypA	NA	E4ZFJ7	Streptococcus_phage	43.2	1.3e-22
WP_071163073.1|337901_338534_-	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_071163072.1|338726_339434_+	7-cyano-7-deazaguanine/7-aminomethyl-7- deazaguanine transporter	NA	A0A2I7SAW6	Vibrio_phage	53.0	2.4e-59
WP_071163071.1|339625_341974_+	ribonuclease R	NA	Q0GXV6	Lactococcus_phage	35.9	3.5e-70
WP_071163070.1|342029_342767_+	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	NA	NA	NA	NA	NA
WP_071163069.1|342806_345377_-	ATP-dependent chaperone ClpB	NA	K4FB40	Cronobacter_phage	37.6	1.0e-123
WP_071163068.1|345505_346069_-	5-formyltetrahydrofolate cyclo-ligase	NA	NA	NA	NA	NA
WP_071163067.1|346524_346821_-	cell division protein ZapA	NA	NA	NA	NA	NA
WP_103708016.1|346969_349762_+	DNA polymerase I	NA	S5M8J1	Bacillus_phage	28.4	2.9e-63
WP_071163065.1|349776_350124_+	hypothetical protein	NA	NA	NA	NA	NA
WP_071163064.1|350495_351284_-	restriction endonuclease	NA	NA	NA	NA	NA
WP_080481765.1|351294_352374_-	site-specific DNA-methyltransferase	NA	A0A1W6JJW1	Lactococcus_phage	34.1	1.4e-29
>prophage 30
NZ_CP031254	Haemophilus influenzae strain M25588 chromosome, complete genome	1848871	365942	375868	1848871		Vibrio_phage(20.0%)	11	NA	NA
WP_071163056.1|365942_366959_+	nucleoid-associated protein YejK	NA	A0A1V0E8C0	Vibrio_phage	44.9	5.0e-74
WP_048954684.1|367024_367438_+	outer membrane protein assembly factor BamE	NA	NA	NA	NA	NA
WP_071163055.1|367491_368175_+	response regulator	NA	W8CYM9	Bacillus_phage	38.4	2.4e-32
WP_005686046.1|368388_369360_-	elongation factor P--(R)-beta-lysine ligase	NA	A0A2K9L3L6	Tupanvirus	27.4	1.0e-28
WP_071163054.1|369570_371370_+	fumarate reductase (quinol) flavoprotein subunit	NA	M1HTN0	Paramecium_bursaria_Chlorella_virus	24.9	8.5e-16
WP_005639269.1|371362_372133_+	succinate dehydrogenase/fumarate reductase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_005652451.1|372143_372554_+	fumarate reductase subunit FrdC	NA	NA	NA	NA	NA
WP_005648338.1|372566_372911_+	fumarate reductase subunit FrdD	NA	NA	NA	NA	NA
WP_103708015.1|373016_373757_-	monofunctional biosynthetic peptidoglycan transglycosylase	NA	NA	NA	NA	NA
WP_005629736.1|373743_374049_-	trp operon repressor	NA	NA	NA	NA	NA
WP_071163052.1|374086_375868_-	transglycosylase SLT domain-containing protein	NA	K4NWI2	Pseudomonas_phage	39.5	3.4e-17
>prophage 31
NZ_CP031254	Haemophilus influenzae strain M25588 chromosome, complete genome	1848871	379130	380651	1848871		Organic_Lake_phycodnavirus(100.0%)	1	NA	NA
WP_005652432.1|379130_380651_-	galactose/methyl galactoside ABC transporter ATP-binding protein MglA	NA	F2Y2R6	Organic_Lake_phycodnavirus	30.2	9.7e-13
>prophage 32
NZ_CP031254	Haemophilus influenzae strain M25588 chromosome, complete genome	1848871	389112	397242	1848871	tRNA	Klosneuvirus(25.0%)	6	NA	NA
WP_071163045.1|389112_391737_+|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	38.5	2.2e-81
WP_071163044.1|391815_392007_+	carbon storage regulator CsrA	NA	A0A2I7RT00	Vibrio_phage	58.8	4.3e-11
WP_071163043.1|392030_392918_+	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	45.6	8.9e-59
WP_071163042.1|393053_394427_+	argininosuccinate lyase	NA	NA	NA	NA	NA
WP_071163041.1|394571_395453_+	Hsp33 family molecular chaperone HslO	NA	NA	NA	NA	NA
WP_114877221.1|395625_397242_+	phosphoenolpyruvate carboxykinase (ATP)	NA	A0A2H4PQN1	Staphylococcus_phage	49.3	1.2e-133
>prophage 33
NZ_CP031254	Haemophilus influenzae strain M25588 chromosome, complete genome	1848871	422819	435228	1848871	tRNA	Planktothrix_phage(14.29%)	14	NA	NA
WP_005632750.1|422819_423476_-	cell division ATP-binding protein FtsE	NA	G9BWD6	Planktothrix_phage	34.0	1.6e-25
WP_071163030.1|423494_424697_-	signal recognition particle-docking protein FtsY	NA	D6PHS7	uncultured_phage	36.1	8.2e-15
WP_005693161.1|424793_425375_+	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	NA	NA	NA	NA	NA
WP_005652354.1|425385_425868_+|tRNA	tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL	tRNA	NA	NA	NA	NA
WP_032828326.1|425916_426753_-	glycosyltransferase family 25 protein	NA	A0A1V0SAK9	Catovirus	27.3	4.4e-07
WP_071163029.1|426779_427427_-	3,4-dihydroxy-2-butanone-4-phosphate synthase	NA	A0A2H4PQS2	Staphylococcus_phage	43.4	5.2e-40
WP_080357040.1|427687_428911_+	multifunctional transcriptional regulator/nicotinamide-nucleotide adenylyltransferase/ribosylnicotinamide kinase NadR	NA	A0A0C5K935	Enterococcus_phage	45.7	1.2e-90
WP_005690352.1|428907_429588_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005693158.1|430195_431269_-	membrane-bound lytic murein transglycosylase MltC	NA	W6ARS2	Escherichia_phage	28.1	2.4e-05
WP_005648477.1|431283_431556_-	oxidative damage protection protein	NA	NA	NA	NA	NA
WP_071163028.1|431533_432670_-	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
WP_005625828.1|432846_433059_+	50S ribosomal protein L31	NA	NA	NA	NA	NA
WP_071163027.1|433136_433820_-	2,3-diphosphoglycerate-dependent phosphoglycerate mutase	NA	NA	NA	NA	NA
WP_071163026.1|433995_435228_+	murein hydrolase activator EnvC	NA	A0A292GJG6	Xanthomonas_phage	40.2	1.2e-08
>prophage 34
NZ_CP031254	Haemophilus influenzae strain M25588 chromosome, complete genome	1848871	438342	445190	1848871		Burkholderia_phage(50.0%)	4	NA	NA
WP_071163023.1|438342_442236_-	phosphoribosylformylglycinamidine synthase	NA	A9YX36	Burkholderia_phage	52.6	1.4e-116
WP_012055216.1|442883_443381_+	thiol peroxidase	NA	NA	NA	NA	NA
WP_012055215.1|443599_444424_-	diaminopimelate epimerase	NA	NA	NA	NA	NA
WP_005648504.1|444566_445190_-	repressor LexA	NA	A5LH73	Enterobacteria_phage	41.1	2.2e-11
>prophage 35
NZ_CP031254	Haemophilus influenzae strain M25588 chromosome, complete genome	1848871	453757	460707	1848871		Streptococcus_phage(33.33%)	3	NA	NA
WP_071163018.1|453757_455410_-	phospho-sugar mutase	NA	A0A1X9I671	Streptococcus_phage	35.0	7.6e-80
WP_114877225.1|455647_459127_+	DNA polymerase III subunit alpha	NA	Q8W6C3	Saccharomonospora_phage	36.9	1.6e-191
WP_071163016.1|459165_460707_-	threonine ammonia-lyase, biosynthetic	NA	A0A1W6JHY1	Lactococcus_phage	27.9	1.0e-09
>prophage 36
NZ_CP031254	Haemophilus influenzae strain M25588 chromosome, complete genome	1848871	472626	474486	1848871		Catovirus(100.0%)	1	NA	NA
WP_071163009.1|472626_474486_-	DNA helicase RecQ	NA	A0A1V0SBK0	Catovirus	37.3	3.9e-88
>prophage 37
NZ_CP031254	Haemophilus influenzae strain M25588 chromosome, complete genome	1848871	484819	485857	1848871		Planktothrix_phage(100.0%)	1	NA	NA
WP_071163005.1|484819_485857_+	methionine ABC transporter ATP-binding protein MetN	NA	G9BWD6	Planktothrix_phage	39.5	3.0e-34
>prophage 38
NZ_CP031254	Haemophilus influenzae strain M25588 chromosome, complete genome	1848871	489761	492533	1848871		uncultured_Mediterranean_phage(100.0%)	1	NA	NA
WP_114877229.1|489761_492533_-	RNA polymerase-associated protein RapA	NA	A0A1B1IUI1	uncultured_Mediterranean_phage	36.6	1.9e-19
>prophage 39
NZ_CP031254	Haemophilus influenzae strain M25588 chromosome, complete genome	1848871	499936	500785	1848871		Enterococcus_phage(100.0%)	1	NA	NA
WP_005654480.1|499936_500785_+	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	39.7	6.1e-33
>prophage 40
NZ_CP031254	Haemophilus influenzae strain M25588 chromosome, complete genome	1848871	518724	525056	1848871	protease	Streptococcus_phage(20.0%)	9	NA	NA
WP_032826248.1|518724_519345_-	YigZ family protein	NA	A0A1X9I5T8	Streptococcus_phage	34.5	5.0e-24
WP_005665561.1|519460_519700_+	sulfurtransferase TusA	NA	A0A140XB86	Dickeya_phage	66.7	4.7e-07
WP_114877239.1|519741_520593_-|protease	protease HtpX	protease	NA	NA	NA	NA
WP_005630808.1|520760_521150_-	RidA family protein	NA	NA	NA	NA	NA
WP_005690012.1|521206_521959_-	VacJ family lipoprotein	NA	NA	NA	NA	NA
WP_005648601.1|522110_522668_-	transcription termination/antitermination protein NusG	NA	A0A291AUS6	Sinorhizobium_phage	26.1	2.6e-08
WP_005658616.1|522669_523086_-	preprotein translocase subunit SecE	NA	NA	NA	NA	NA
WP_114877241.1|523229_524465_-|protease	ATP-dependent protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	55.5	1.4e-123
WP_005648605.1|524474_525056_-	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	NA	A0A223W000	Agrobacterium_phage	60.8	5.8e-59
>prophage 41
NZ_CP031254	Haemophilus influenzae strain M25588 chromosome, complete genome	1848871	530909	537030	1848871	tRNA	Insectomime_virus(50.0%)	3	NA	NA
WP_103708039.1|530909_532769_-	selenocysteine-specific translation elongation factor	NA	V5L5J1	Insectomime_virus	24.7	6.7e-08
WP_071162996.1|532765_534151_-|tRNA	L-seryl-tRNA(Sec) selenium transferase	tRNA	NA	NA	NA	NA
WP_071162995.1|534444_537030_-	DNA mismatch repair protein MutS	NA	E5RUN9	Heterocapsa_circularisquama_DNA_virus	22.2	6.2e-28
>prophage 42
NZ_CP031254	Haemophilus influenzae strain M25588 chromosome, complete genome	1848871	542291	543041	1848871		uncultured_Mediterranean_phage(100.0%)	1	NA	NA
WP_103708041.1|542291_543041_-	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	50.2	6.8e-68
>prophage 43
NZ_CP031254	Haemophilus influenzae strain M25588 chromosome, complete genome	1848871	556810	557605	1848871		Acanthocystis_turfacea_Chlorella_virus(100.0%)	1	NA	NA
WP_071162988.1|556810_557605_-	aquaporin	NA	M1H4F4	Acanthocystis_turfacea_Chlorella_virus	31.9	4.4e-17
>prophage 44
NZ_CP031254	Haemophilus influenzae strain M25588 chromosome, complete genome	1848871	572216	573104	1848871		Bacillus_phage(100.0%)	1	NA	NA
WP_103708128.1|572216_573104_+	tyrosine recombinase XerC	NA	A0A1B1P7C7	Bacillus_phage	29.3	1.7e-17
>prophage 45
NZ_CP031254	Haemophilus influenzae strain M25588 chromosome, complete genome	1848871	581320	584717	1848871		Bacillus_phage(50.0%)	2	NA	NA
WP_103708105.1|581320_582979_-	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	29.2	9.2e-33
WP_103708104.1|582971_584717_-	ABC transporter ATP-binding protein/permease	NA	A0A1V0SJ29	Klosneuvirus	20.3	4.8e-08
>prophage 46
NZ_CP031254	Haemophilus influenzae strain M25588 chromosome, complete genome	1848871	589379	598800	1848871	tRNA	Tupanvirus(25.0%)	10	NA	NA
WP_114877247.1|589379_591296_+	ABC transporter ATP-binding protein	NA	A0A2K9L3Z8	Tupanvirus	31.2	2.4e-69
WP_103708099.1|591305_591842_+	hypothetical protein	NA	NA	NA	NA	NA
WP_103708098.1|591857_592409_+|tRNA	tRNA threonylcarbamoyladenosine biosynthesis protein RimN	tRNA	NA	NA	NA	NA
WP_103708097.1|592412_593219_+	shikimate dehydrogenase	NA	NA	NA	NA	NA
WP_103708096.1|593432_593996_+	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_103708095.1|593992_594757_-	glycosyltransferase family 2 protein	NA	A0A1V0SAJ8	Catovirus	31.5	5.8e-06
WP_071162972.1|594819_596103_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
WP_071162971.1|596099_596570_+	pantetheine-phosphate adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	40.6	1.4e-23
WP_071162970.1|596566_596779_+	YceK/YidQ family lipoprotein	NA	NA	NA	NA	NA
WP_071162969.1|596784_598800_+	DNA helicase Rep	NA	A7KV33	Bacillus_phage	39.6	1.3e-118
>prophage 47
NZ_CP031254	Haemophilus influenzae strain M25588 chromosome, complete genome	1848871	602023	609991	1848871		Bacillus_virus(25.0%)	8	NA	NA
WP_005654516.1|602023_602740_+	MgtC/SapB family protein	NA	G3MA03	Bacillus_virus	34.5	9.8e-16
WP_042594701.1|602905_604021_+	aspartate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_071162966.1|604075_605011_+	alpha/beta hydrolase	NA	Q0NQ37	Cowpox_virus	24.5	1.1e-06
WP_005665148.1|605549_605861_+	DUF5389 family protein	NA	NA	NA	NA	NA
WP_071162965.1|605900_607271_-	bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU	NA	A0A0N7G7I9	Chrysochromulina_ericina_virus	36.2	3.8e-32
WP_005650892.1|607431_607803_-	50S ribosomal protein L7/L12	NA	NA	NA	NA	NA
WP_005626605.1|607857_608349_-	50S ribosomal protein L10	NA	NA	NA	NA	NA
WP_114877249.1|608620_609991_-	adenylosuccinate lyase	NA	A0A2H4UUU6	Bodo_saltans_virus	48.0	3.3e-113
>prophage 48
NZ_CP031254	Haemophilus influenzae strain M25588 chromosome, complete genome	1848871	614093	617445	1848871		Hokovirus(50.0%)	2	NA	NA
WP_005667564.1|614093_615278_-	elongation factor Tu	NA	A0A1V0SGC3	Hokovirus	27.2	6.1e-31
WP_005651039.1|615342_617445_-	elongation factor G	NA	E4ZFJ7	Streptococcus_phage	27.8	1.3e-60
>prophage 49
NZ_CP031254	Haemophilus influenzae strain M25588 chromosome, complete genome	1848871	635752	637738	1848871		Staphylococcus_phage(50.0%)	3	NA	NA
WP_005658943.1|635752_636139_+	fluoride efflux transporter CrcB	NA	A0A2H4PQR0	Staphylococcus_phage	38.0	2.2e-06
WP_071162958.1|636135_636594_-	recombination regulator RecX	NA	NA	NA	NA	NA
WP_005654959.1|636673_637738_-	recombinase RecA	NA	A0A2D1GPX2	Mycobacterium_phage	62.2	2.6e-113
>prophage 50
NZ_CP031254	Haemophilus influenzae strain M25588 chromosome, complete genome	1848871	644862	646395	1848871	tRNA	Synechococcus_phage(50.0%)	2	NA	NA
WP_005630900.1|644862_645372_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	41.8	1.1e-18
WP_071162959.1|645438_646395_+|tRNA	methionyl-tRNA formyltransferase	tRNA	E3SNR5	Prochlorococcus_phage	34.8	1.5e-06
>prophage 51
NZ_CP031254	Haemophilus influenzae strain M25588 chromosome, complete genome	1848871	650054	650624	1848871		Rhizobium_phage(100.0%)	1	NA	NA
WP_005655198.1|650054_650624_+	RNA polymerase sigma factor RpoE	NA	A0A076YQ50	Rhizobium_phage	28.9	4.3e-06
>prophage 52
NZ_CP031254	Haemophilus influenzae strain M25588 chromosome, complete genome	1848871	653982	655167	1848871		Hokovirus(100.0%)	1	NA	NA
WP_005667564.1|653982_655167_+	elongation factor Tu	NA	A0A1V0SGC3	Hokovirus	27.2	6.1e-31
>prophage 53
NZ_CP031254	Haemophilus influenzae strain M25588 chromosome, complete genome	1848871	658220	658946	1848871		Synechococcus_phage(100.0%)	1	NA	NA
WP_005692022.1|658220_658946_-	redoxin family protein	NA	A0A1D8KSL1	Synechococcus_phage	57.4	3.2e-46
>prophage 54
NZ_CP031254	Haemophilus influenzae strain M25588 chromosome, complete genome	1848871	663668	668683	1848871		Bacillus_virus(50.0%)	4	NA	NA
WP_071162944.1|663668_666089_+	DNA topoisomerase (ATP-hydrolyzing) subunit B	NA	G3M9Z3	Bacillus_virus	35.1	8.5e-120
WP_071162943.1|666231_666906_+	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_071162942.1|666951_667626_+	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
WP_005649541.1|667690_668683_-	aspartate--ammonia ligase	NA	A0A1C9C5F0	Heterosigma_akashiwo_virus	38.9	2.0e-51
>prophage 55
NZ_CP031254	Haemophilus influenzae strain M25588 chromosome, complete genome	1848871	673286	679612	1848871	transposase	Synechococcus_phage(33.33%)	6	NA	NA
WP_071162938.1|673286_674771_+	glucose-6-phosphate dehydrogenase	NA	E3SIC8	Synechococcus_phage	39.1	1.9e-82
WP_071162937.1|674859_675558_+	6-phosphogluconolactonase	NA	NA	NA	NA	NA
WP_005649525.1|675921_676455_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_005649523.1|676571_678026_+	decarboxylating NADP(+)-dependent phosphogluconate dehydrogenase	NA	M4SJX8	Cyanophage	33.3	2.3e-35
WP_071162936.1|678151_678775_-	hypothetical protein	NA	NA	NA	NA	NA
WP_071162935.1|678784_679612_-	bis(5'-nucleosyl)-tetraphosphatase (symmetrical)	NA	A0A096XT93	Enterococcus_phage	44.9	7.4e-07
>prophage 56
NZ_CP031254	Haemophilus influenzae strain M25588 chromosome, complete genome	1848871	684849	686809	1848871		Vibrio_phage(50.0%)	2	NA	NA
WP_071162931.1|684849_686496_-	chaperonin GroEL	NA	A0A2I7SAK5	Vibrio_phage	68.4	1.3e-188
WP_005687043.1|686518_686809_-	co-chaperone GroES	NA	A0A1L2CUK7	Pectobacterium_phage	44.3	5.9e-12
>prophage 57
NZ_CP031254	Haemophilus influenzae strain M25588 chromosome, complete genome	1848871	694304	701898	1848871	tRNA	Vibrio_phage(20.0%)	7	NA	NA
WP_005666402.1|694304_696194_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	33.5	2.4e-37
WP_071162925.1|696263_698045_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	35.5	8.3e-64
WP_005627632.1|698178_698394_-	30S ribosomal protein S21	NA	NA	NA	NA	NA
WP_071162924.1|698624_699653_+|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	58.3	2.3e-111
WP_005649496.1|699661_700243_+	thymidine kinase	NA	G9I9I2	Pseudomonas_phage	54.3	1.1e-52
WP_071162923.1|700279_701500_+	tyrosine transporter	NA	NA	NA	NA	NA
WP_005651954.1|701637_701898_-	YfhL family 4Fe-4S dicluster ferredoxin	NA	A0A1B1IWY9	uncultured_Mediterranean_phage	59.0	1.1e-20
>prophage 58
NZ_CP031254	Haemophilus influenzae strain M25588 chromosome, complete genome	1848871	713302	723348	1848871		Invertebrate_iridescent_virus(33.33%)	3	NA	NA
WP_071162917.1|713302_717334_+	DNA-directed RNA polymerase subunit beta	NA	W8W2D5	Invertebrate_iridescent_virus	20.7	4.5e-25
WP_071162916.1|717471_721719_+	DNA-directed RNA polymerase subunit beta'	NA	R4TQM7	Phaeocystis_globosa_virus	65.7	1.3e-03
WP_005693660.1|721791_723348_+	N-6 DNA methylase	NA	A0A1V0SF64	Hokovirus	31.1	3.6e-15
>prophage 59
NZ_CP031254	Haemophilus influenzae strain M25588 chromosome, complete genome	1848871	727748	733812	1848871		Caulobacter_phage(33.33%)	6	NA	NA
WP_005649445.1|727748_728300_-	TIGR00645 family protein	NA	K4K6D8	Caulobacter_phage	31.2	2.9e-23
WP_005686992.1|728405_729404_-	substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_071162911.1|729431_730352_-	ribokinase	NA	NA	NA	NA	NA
WP_071162910.1|730448_731327_-	ribose ABC transporter substrate-binding protein RbsB	NA	C6ZCU4	Enterobacteria_phage	24.8	2.5e-05
WP_071162909.1|731346_732315_-	ribose ABC transporter permease	NA	NA	NA	NA	NA
WP_114877260.1|732330_733812_-	ribose ABC transporter ATP-binding protein RbsA	NA	A0A2K9L3Z8	Tupanvirus	22.4	4.8e-17
>prophage 60
NZ_CP031254	Haemophilus influenzae strain M25588 chromosome, complete genome	1848871	738571	793969	1848871	head,terminase,portal,protease,tail,capsid	uncultured_Caudovirales_phage(43.75%)	57	NA	NA
WP_071162905.1|738571_739906_-	HslU--HslV peptidase ATPase subunit	NA	A0A173GFL6	Erwinia_phage	29.1	9.3e-44
WP_005652018.1|739916_740444_-|protease	ATP-dependent protease subunit HslV	protease	NA	NA	NA	NA
WP_005649426.1|740663_741371_+	acid phosphatase AphA	NA	NA	NA	NA	NA
WP_005662536.1|742315_742819_-	S-ribosylhomocysteine lyase	NA	NA	NA	NA	NA
WP_071162904.1|743003_743477_-	DedA family protein	NA	NA	NA	NA	NA
WP_005652027.1|743476_744079_-	beta-phosphoglucomutase family hydrolase	NA	A0A1D8KNV9	Synechococcus_phage	23.2	4.7e-11
WP_103707991.1|744194_744572_+	PRD domain-containing protein	NA	NA	NA	NA	NA
WP_071162903.1|744711_745323_+	16S rRNA (guanine(527)-N(7))-methyltransferase RsmG	NA	NA	NA	NA	NA
WP_005659757.1|745448_745823_+	F0F1 ATP synthase subunit I	NA	NA	NA	NA	NA
WP_071162902.1|745859_746648_+	F0F1 ATP synthase subunit A	NA	NA	NA	NA	NA
WP_005652035.1|746703_746958_+	F0F1 ATP synthase subunit C	NA	NA	NA	NA	NA
WP_005629246.1|747007_747478_+	F0F1 ATP synthase subunit B	NA	NA	NA	NA	NA
WP_005642563.1|747490_748024_+	F0F1 ATP synthase subunit delta	NA	NA	NA	NA	NA
WP_071162901.1|748036_749578_+	F0F1 ATP synthase subunit alpha	NA	NA	NA	NA	NA
WP_071162900.1|749593_750463_+	F0F1 ATP synthase subunit gamma	NA	NA	NA	NA	NA
WP_071162899.1|750479_751853_+	F0F1 ATP synthase subunit beta	NA	NA	NA	NA	NA
WP_015701694.1|751882_752311_+	F0F1 ATP synthase subunit epsilon	NA	NA	NA	NA	NA
WP_005693687.1|752496_753699_-	Tyrosine-specific transporter 1	NA	NA	NA	NA	NA
WP_071162898.1|753962_754628_-	bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE	NA	NA	NA	NA	NA
WP_071162897.1|754627_755404_-	imidazole glycerol phosphate synthase subunit HisF	NA	NA	NA	NA	NA
WP_005649383.1|755385_756135_-	1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase	NA	A0A1V0SIZ6	Klosneuvirus	28.0	6.7e-07
WP_005649382.1|756170_756770_-	imidazole glycerol phosphate synthase subunit HisH	NA	NA	NA	NA	NA
WP_011961666.1|756835_757924_-	bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB	NA	NA	NA	NA	NA
WP_005686956.1|758035_759094_-	histidinol-phosphate transaminase	NA	A0A1X7QHI1	Faustovirus	24.0	6.5e-16
WP_103707990.1|759207_760491_-	histidinol dehydrogenase	NA	NA	NA	NA	NA
WP_071162895.1|760583_761495_-	ATP phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_005686949.1|761941_762805_+	YicC family protein	NA	NA	NA	NA	NA
WP_071162894.1|762814_763657_+	folate-binding protein YgfZ	NA	NA	NA	NA	NA
WP_071162893.1|763700_764933_-	phosphoglycerate dehydrogenase	NA	A0A1V0SBV6	Catovirus	48.4	4.6e-106
WP_071162892.1|764962_765622_-	ribose-5-phosphate isomerase RpiA	NA	NA	NA	NA	NA
WP_071162891.1|765754_766906_-	radical SAM family heme chaperone HemW	NA	NA	NA	NA	NA
WP_071162890.1|767021_769433_-	endopeptidase La	NA	A0A0R6PGP8	Moraxella_phage	52.5	9.7e-225
WP_071162889.1|769625_770501_+	VirK/YbjX family protein	NA	NA	NA	NA	NA
WP_071162888.1|770550_771342_-	nucleoside triphosphate pyrophosphohydrolase	NA	NA	NA	NA	NA
WP_005649361.1|771473_772013_+	bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR	NA	NA	NA	NA	NA
WP_071162887.1|772088_773024_+	peptidylprolyl isomerase	NA	NA	NA	NA	NA
WP_071162886.1|773093_774137_+	endolytic transglycosylase MltG	NA	NA	NA	NA	NA
WP_071163326.1|774153_774786_+	dTMP kinase	NA	M1PSC7	Streptococcus_phage	41.4	1.4e-29
WP_071162885.1|775133_777062_-	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA	NA
WP_071162884.1|777408_778392_+	DNA polymerase III subunit delta'	NA	B2ZY37	Ralstonia_phage	26.2	2.8e-05
WP_071162883.1|778446_779229_+	YchF/TatD family DNA exonuclease	NA	NA	NA	NA	NA
WP_005652096.1|779255_779780_+	DUF1523 family protein	NA	NA	NA	NA	NA
WP_114877262.1|781199_781391_+	DUF5397 family protein	NA	NA	NA	NA	NA
WP_071162882.1|781399_781537_+	virulence-associated protein D	NA	NA	NA	NA	NA
WP_005686915.1|781629_782160_+	hypothetical protein	NA	NA	NA	NA	NA
WP_071162881.1|782231_783731_+	HPr family phosphocarrier protein	NA	NA	NA	NA	NA
WP_071162880.1|783732_784674_+	1-phosphofructokinase	NA	NA	NA	NA	NA
WP_071162879.1|784675_786346_+	PTS fructose transporter subunit EIIBC	NA	NA	NA	NA	NA
WP_114877264.1|787238_787637_+|tail	phage tail protein	tail	NA	NA	NA	NA
WP_114877266.1|787646_788837_+|capsid	phage major capsid protein	capsid	A0A2H4JED2	uncultured_Caudovirales_phage	62.2	7.6e-130
WP_114877268.1|788881_789448_+|head,protease	HK97 family phage prohead protease	head,protease	A0A2H4JB68	uncultured_Caudovirales_phage	64.0	7.4e-51
WP_114877270.1|789449_790682_+|portal	phage portal protein	portal	A0A2H4JFJ9	uncultured_Caudovirales_phage	63.3	7.8e-146
WP_005626382.1|790665_791022_+|head	phage head closure protein	head	Q9MCV2	Escherichia_phage	36.7	2.0e-09
WP_005656491.1|791008_791323_+|head,tail	phage gp6-like head-tail connector protein	head,tail	A0A2H4JD08	uncultured_Caudovirales_phage	49.5	7.1e-19
WP_114877272.1|791333_791690_+	HNH endonuclease	NA	A0A2H4JAS8	uncultured_Caudovirales_phage	53.6	3.8e-29
WP_005626376.1|791919_792294_+|terminase	phage terminase small subunit P27 family	terminase	A0A2H4JHS3	uncultured_Caudovirales_phage	64.9	1.7e-35
WP_114877275.1|792301_793969_+|terminase	terminase large subunit	terminase	A0A2H4JB64	uncultured_Caudovirales_phage	70.2	3.2e-243
>prophage 61
NZ_CP031254	Haemophilus influenzae strain M25588 chromosome, complete genome	1848871	799215	805086	1848871	integrase	Enterobacteria_phage(33.33%)	4	796643:796659	806281:806297
796643:796659	attL	AAAGTGCGGTGAAATTT	NA	NA	NA	NA
WP_114877293.1|799215_800985_+	DNA primase	NA	Q7M2A8	Enterobacteria_phage	37.5	2.1e-75
WP_114877295.1|801156_802383_-|integrase	tyrosine-type recombinase/integrase	integrase	A0A0R6PH06	Moraxella_phage	33.4	1.8e-46
WP_005649335.1|802680_803022_-	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
WP_071162878.1|803130_805086_-	DNA topoisomerase III	NA	A0A1X9I6W8	Streptococcus_phage	31.0	1.2e-39
806281:806297	attR	AAAGTGCGGTGAAATTT	NA	NA	NA	NA
>prophage 62
NZ_CP031254	Haemophilus influenzae strain M25588 chromosome, complete genome	1848871	812170	818725	1848871		Vibrio_phage(33.33%)	7	NA	NA
WP_071162872.1|812170_813508_+	type IV pilus secretin PilQ family protein	NA	R9TEZ5	Vibrio_phage	23.7	3.3e-17
WP_071162871.1|813520_814207_+	ComF family protein	NA	NA	NA	NA	NA
WP_005649300.1|814282_814879_+	Fe-S biogenesis protein NfuA	NA	NA	NA	NA	NA
WP_071162870.1|814946_815741_+	NAD(+) diphosphatase	NA	NA	NA	NA	NA
WP_071162869.1|815776_816367_+	YjaG family protein	NA	NA	NA	NA	NA
WP_005630954.1|816506_816779_+	HU family DNA-binding protein	NA	A7KV42	Bacillus_phage	61.1	5.9e-22
WP_071162868.1|816892_818725_+	glutamine--fructose-6-phosphate transaminase (isomerizing)	NA	A7IW18	Paramecium_bursaria_Chlorella_virus	43.8	1.9e-132
>prophage 63
NZ_CP031254	Haemophilus influenzae strain M25588 chromosome, complete genome	1848871	825129	830446	1848871	tRNA	uncultured_Mediterranean_phage(33.33%)	5	NA	NA
WP_114877299.1|825129_826464_+	ATP-dependent RNA helicase SrmB	NA	A0A1B1IS59	uncultured_Mediterranean_phage	30.0	1.3e-45
WP_071162862.1|826641_827160_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_005652149.1|827149_827449_-	DUF1778 domain-containing protein	NA	NA	NA	NA	NA
WP_071162861.1|827590_828973_-|tRNA	tRNA 5-hydroxyuridine modification protein YegQ	tRNA	Q6DW11	Phage_TP	77.4	4.2e-164
WP_071162860.1|829141_830446_-	MHS family MFS transporter	NA	Q6JIH2	Burkholderia_virus	28.6	4.2e-33
>prophage 64
NZ_CP031254	Haemophilus influenzae strain M25588 chromosome, complete genome	1848871	836716	841624	1848871		Bodo_saltans_virus(33.33%)	5	NA	NA
WP_071162855.1|836716_837685_+	23S rRNA pseudouridine(955/2504/2580) synthase RluC	NA	A0A2H4UV25	Bodo_saltans_virus	27.4	8.1e-05
WP_005693756.1|837775_838051_+	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_005662615.1|838147_839104_-	sigma-54-dependent transcriptional regulator	NA	NA	NA	NA	NA
WP_080481749.1|839218_840646_-	murein DD-endopeptidase MepM	NA	A0A2K9VGT1	Pontimonas_phage	48.7	3.8e-19
WP_071162853.1|840817_841624_+	zinc ABC transporter ATP-binding protein ZnuC	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	31.9	5.9e-17
>prophage 65
NZ_CP031254	Haemophilus influenzae strain M25588 chromosome, complete genome	1848871	846340	851839	1848871		Streptococcus_phage(33.33%)	6	NA	NA
WP_032828387.1|846340_846880_-	methylated-DNA--[protein]-cysteine S-methyltransferase	NA	M1PFU9	Streptococcus_phage	38.5	6.7e-25
WP_103707983.1|846956_848327_-	transporter	NA	NA	NA	NA	NA
WP_005691446.1|848535_848823_+	YfcZ/YiiS family protein	NA	NA	NA	NA	NA
WP_071162846.1|848920_849745_-	3',5'-cyclic-AMP phosphodiesterase	NA	NA	NA	NA	NA
WP_071162845.1|849754_850387_-	ADP-ribose diphosphatase	NA	A0A1S6L1P8	Vibrio_phage	35.2	3.5e-25
WP_071162844.1|850519_851839_-	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	39.5	1.2e-40
>prophage 66
NZ_CP031254	Haemophilus influenzae strain M25588 chromosome, complete genome	1848871	855329	863390	1848871	tRNA	Salmonella_phage(25.0%)	6	NA	NA
WP_071162841.1|855329_857198_+	acyltransferase	NA	C6ZR20	Salmonella_phage	31.4	8.1e-54
WP_071162840.1|857240_858383_-	ribonuclease D	NA	U3REX2	uncultured_virus	31.4	1.1e-08
WP_114877307.1|858438_860127_-	long-chain-fatty-acid--CoA ligase FadD	NA	A0A2H4PQU7	Staphylococcus_phage	27.0	5.0e-26
WP_071162838.1|860168_860720_-	Slp family lipoprotein	NA	NA	NA	NA	NA
WP_012055004.1|860744_861455_-|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB	tRNA	NA	NA	NA	NA
WP_013526515.1|861467_863390_-	ATP-dependent DNA helicase	NA	A0A127AW80	Bacillus_phage	33.2	1.9e-98
>prophage 67
NZ_CP031254	Haemophilus influenzae strain M25588 chromosome, complete genome	1848871	870095	877802	1848871	tRNA	unidentified_phage(20.0%)	10	NA	NA
WP_005656383.1|870095_871310_+	IscS subfamily cysteine desulfurase	NA	H7BUW1	unidentified_phage	35.5	1.5e-32
WP_005654861.1|871369_871750_+	Fe-S cluster assembly scaffold IscU	NA	A0A218MKD1	uncultured_virus	80.6	1.4e-53
WP_005649164.1|871806_872130_+	iron-sulfur cluster assembly protein IscA	NA	A0A2H4N7N5	Lake_Baikal_phage	46.7	4.4e-24
WP_071162835.1|872142_872667_+	Fe-S protein assembly co-chaperone HscB	NA	NA	NA	NA	NA
WP_005669116.1|872717_873404_+	DUF2625 domain-containing protein	NA	NA	NA	NA	NA
WP_071162834.1|873422_875282_+	Fe-S protein assembly chaperone HscA	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	42.7	2.7e-110
WP_005656373.1|875321_875663_+	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA	NA
WP_005659903.1|875662_875857_+	Fe-S cluster assembly protein IscX	NA	NA	NA	NA	NA
WP_114877309.1|875904_876513_-	YfgM family protein	NA	NA	NA	NA	NA
WP_071162833.1|876530_877802_-|tRNA	histidine--tRNA ligase	tRNA	A0A1V0SLE3	Klosneuvirus	26.2	1.5e-27
>prophage 68
NZ_CP031254	Haemophilus influenzae strain M25588 chromosome, complete genome	1848871	884071	884992	1848871		Brazilian_cedratvirus(100.0%)	1	NA	NA
WP_040034370.1|884071_884992_+	ATP-binding cassette domain-containing protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.7	7.9e-18
>prophage 69
NZ_CP031254	Haemophilus influenzae strain M25588 chromosome, complete genome	1848871	888398	892383	1848871		Bacillus_virus(66.67%)	4	NA	NA
WP_114877313.1|888398_889136_-	ABC transporter permease	NA	G3M9Y4	Bacillus_virus	24.9	5.7e-11
WP_071162825.1|889132_889855_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	34.5	1.1e-27
WP_114877315.1|890239_891190_+	CMP-Neu5Ac--lipooligosaccharide alpha 2-3 sialyltransferase	NA	NA	NA	NA	NA
WP_071162823.1|891366_892383_+	UDP-glucose 4-epimerase GalE	NA	A0A2K9L1R4	Tupanvirus	48.9	3.2e-89
>prophage 70
NZ_CP031254	Haemophilus influenzae strain M25588 chromosome, complete genome	1848871	909269	910586	1848871		Erysipelothrix_phage(100.0%)	1	NA	NA
WP_114877319.1|909269_910586_-	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	A0A2K5B251	Erysipelothrix_phage	26.0	1.6e-40
>prophage 71
NZ_CP031254	Haemophilus influenzae strain M25588 chromosome, complete genome	1848871	918666	929897	1848871	tRNA	Staphylococcus_phage(16.67%)	13	NA	NA
WP_006996165.1|918666_919392_-	carboxy-S-adenosyl-L-methionine synthase CmoA	NA	A0A0N9SHZ9	Staphylococcus_phage	32.0	2.8e-26
WP_005649040.1|919444_919963_-	isoprenylcysteine carboxyl methyltransferase family protein	NA	NA	NA	NA	NA
WP_071162808.1|920181_921948_+|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SFI4	Hokovirus	30.3	3.2e-07
WP_005659988.1|921969_922443_+	dihydroneopterin triphosphate diphosphatase	NA	NA	NA	NA	NA
WP_114877321.1|922454_923195_+	YebC/PmpR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_011271984.1|923241_923814_+	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
WP_005686751.1|923876_924491_+	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_005659996.1|924498_925506_+	Holliday junction branch migration DNA helicase RuvB	NA	B3GAM6	uncultured_virus	29.9	6.9e-07
WP_005694353.1|925557_925845_-	DUF5339 domain-containing protein	NA	NA	NA	NA	NA
WP_071162806.1|926017_926911_-	site-specific tyrosine recombinase XerD	NA	S5M9V8	Brevibacillus_phage	29.1	3.9e-22
WP_071162805.1|926941_928108_-	3-phenylpropionate MFS transporter	NA	NA	NA	NA	NA
WP_071162804.1|928107_928923_-	pyrroline-5-carboxylate reductase	NA	A0A1X9I6T5	Streptococcus_phage	28.4	4.1e-18
WP_071162803.1|928988_929897_+	recombination-associated protein RdgC	NA	S4TWL4	Salmonella_phage	46.9	5.9e-66
>prophage 72
NZ_CP031254	Haemophilus influenzae strain M25588 chromosome, complete genome	1848871	934791	935343	1848871		Agrobacterium_phage(100.0%)	1	NA	NA
WP_071162800.1|934791_935343_-	1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	NA	A0A223VZK2	Agrobacterium_phage	28.5	3.4e-08
>prophage 73
NZ_CP031254	Haemophilus influenzae strain M25588 chromosome, complete genome	1848871	941545	943898	1848871		uncultured_virus(100.0%)	2	NA	NA
WP_005654130.1|941545_941752_+	heavy-metal-associated domain-containing protein	NA	A0A218MNH0	uncultured_virus	53.1	8.7e-10
WP_114877331.1|941726_943898_+	copper-translocating P-type ATPase	NA	A0A218MNH6	uncultured_virus	51.8	1.2e-194
>prophage 74
NZ_CP031254	Haemophilus influenzae strain M25588 chromosome, complete genome	1848871	953466	954783	1848871		Burkholderia_virus(100.0%)	1	NA	NA
WP_071162791.1|953466_954783_+	MHS family MFS transporter	NA	Q6JIH2	Burkholderia_virus	28.7	9.2e-36
>prophage 75
NZ_CP031254	Haemophilus influenzae strain M25588 chromosome, complete genome	1848871	960382	961825	1848871	tRNA	Escherichia_phage(100.0%)	1	NA	NA
WP_071162786.1|960382_961825_+|tRNA	glutamate--tRNA ligase	tRNA	A0A222YZ70	Escherichia_phage	35.2	1.7e-11
>prophage 76
NZ_CP031254	Haemophilus influenzae strain M25588 chromosome, complete genome	1848871	964918	965764	1848871		Salicola_phage(100.0%)	1	NA	NA
WP_005653377.1|964918_965764_-	RNA polymerase sigma factor RpoH	NA	A0A248SJA5	Salicola_phage	39.5	4.7e-41
>prophage 77
NZ_CP031254	Haemophilus influenzae strain M25588 chromosome, complete genome	1848871	978678	979266	1848871		Ugandan_cassava_brown_streak_virus(100.0%)	1	NA	NA
WP_048940918.1|978678_979266_+	RdgB/HAM1 family non-canonical purine NTP pyrophosphatase	NA	A0A0P0A2M4	Ugandan_cassava_brown_streak_virus	31.8	2.6e-14
>prophage 78
NZ_CP031254	Haemophilus influenzae strain M25588 chromosome, complete genome	1848871	985844	989337	1848871		Xanthomonas_phage(50.0%)	2	NA	NA
WP_071162774.1|985844_986351_-	single-stranded DNA-binding protein	NA	I3PGW4	Xanthomonas_phage	56.6	4.3e-42
WP_071162773.1|986505_989337_+	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	57.2	0.0e+00
>prophage 79
NZ_CP031254	Haemophilus influenzae strain M25588 chromosome, complete genome	1848871	999659	1001501	1848871		Diachasmimorpha_longicaudata_entomopoxvirus(100.0%)	1	NA	NA
WP_071162769.1|999659_1001501_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	33.9	6.1e-54
>prophage 80
NZ_CP031254	Haemophilus influenzae strain M25588 chromosome, complete genome	1848871	1005578	1006553	1848871		uncultured_Mediterranean_phage(100.0%)	1	NA	NA
WP_005653412.1|1005578_1006553_-	protein translocase subunit SecF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	39.9	4.7e-45
>prophage 81
NZ_CP031254	Haemophilus influenzae strain M25588 chromosome, complete genome	1848871	1009685	1022788	1848871	tRNA	uncultured_Mediterranean_phage(20.0%)	12	NA	NA
WP_005692210.1|1009685_1010834_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	45.3	2.5e-90
WP_071162764.1|1011177_1012269_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_005668223.1|1012392_1012839_-	hypothetical protein	NA	NA	NA	NA	NA
WP_071162763.1|1013061_1013907_-	hypothetical protein	NA	F6MIM2	Haemophilus_phage	72.1	1.1e-117
WP_050948612.1|1013963_1014083_-	Com family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_071162762.1|1014990_1015353_+	glutathionylspermidine synthase family protein	NA	NA	NA	NA	NA
WP_071162761.1|1015367_1016678_-	branched-chain amino acid transport system II carrier protein	NA	NA	NA	NA	NA
WP_071162760.1|1016866_1018069_+	Na+/H+ antiporter NhaA	NA	A0A2H4J5W3	uncultured_Caudovirales_phage	47.0	9.2e-83
WP_005648788.1|1018107_1018569_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_012054887.1|1018688_1019579_+	EamA family transporter RarD	NA	NA	NA	NA	NA
WP_114877347.1|1019640_1021212_-	glutamine-hydrolyzing GMP synthase	NA	A0A1V0SH76	Hokovirus	30.1	4.6e-18
WP_071162758.1|1021321_1022788_-	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	40.4	9.7e-95
>prophage 82
NZ_CP031254	Haemophilus influenzae strain M25588 chromosome, complete genome	1848871	1030772	1032569	1848871		Hokovirus(100.0%)	1	NA	NA
WP_071162755.1|1030772_1032569_+	response regulator	NA	A0A1V0SGX0	Hokovirus	31.8	7.1e-39
>prophage 83
NZ_CP031254	Haemophilus influenzae strain M25588 chromosome, complete genome	1848871	1039367	1050026	1848871		Staphylococcus_phage(40.0%)	8	NA	NA
WP_071162751.1|1039367_1040915_-	type I restriction-modification system subunit M	NA	A0A2H4PQP4	Staphylococcus_phage	42.7	2.5e-101
WP_071163324.1|1041160_1043200_-	oligopeptidase A	NA	A0A1V0SD92	Indivirus	24.9	7.8e-50
WP_005648761.1|1043324_1043687_+	YbaN family protein	NA	NA	NA	NA	NA
WP_114877349.1|1043679_1045224_+	peptide ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005629111.1|1045540_1046191_-	GTP cyclohydrolase II	NA	A0A2H4PQS2	Staphylococcus_phage	44.3	6.5e-43
WP_005648755.1|1046259_1046985_+	phosphatase PAP2 family protein	NA	NA	NA	NA	NA
WP_012054875.1|1048075_1048936_-	Dam family site-specific DNA-(adenine-N6)-methyltransferase	NA	A0A1S6L1V5	Vibrio_phage	45.7	1.3e-59
WP_005694088.1|1048937_1050026_-	3-dehydroquinate synthase	NA	A0A0P0C619	Ostreococcus_mediterraneus_virus	30.5	3.5e-25
>prophage 84
NZ_CP031254	Haemophilus influenzae strain M25588 chromosome, complete genome	1848871	1056965	1060772	1848871		Morganella_phage(50.0%)	4	NA	NA
WP_005648732.1|1056965_1057922_-	lauroyl-Kdo(2)-lipid IV(A) myristoyltransferase	NA	A0A1W6JP29	Morganella_phage	25.5	5.5e-22
WP_071162747.1|1057968_1058736_-	TSUP family transporter	NA	NA	NA	NA	NA
WP_065251143.1|1058753_1059614_-	penicillin-insensitive murein endopeptidase	NA	NA	NA	NA	NA
WP_071162746.1|1059698_1060772_-	chorismate synthase	NA	A0A291AU41	Pandoravirus	47.3	1.7e-88
>prophage 85
NZ_CP031254	Haemophilus influenzae strain M25588 chromosome, complete genome	1848871	1064143	1066951	1848871		Staphylococcus_phage(50.0%)	3	NA	NA
WP_071162744.1|1064143_1065502_-	o-succinylbenzoate--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	29.5	4.4e-25
WP_005648714.1|1065504_1066098_-	replication initiation negative regulator SeqA	NA	NA	NA	NA	NA
WP_071162743.1|1066168_1066951_+	alpha/beta fold hydrolase	NA	A0A2R8FDA5	Brazilian_cedratvirus	24.8	1.4e-07
>prophage 86
NZ_CP031254	Haemophilus influenzae strain M25588 chromosome, complete genome	1848871	1072175	1073312	1848871		Synechococcus_phage(100.0%)	1	NA	NA
WP_012054862.1|1072175_1073312_+	S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase	NA	E3SJ82	Synechococcus_phage	28.8	2.6e-31
>prophage 87
NZ_CP031254	Haemophilus influenzae strain M25588 chromosome, complete genome	1848871	1078262	1083910	1848871		Tetraselmis_virus(66.67%)	5	NA	NA
WP_071162739.1|1078262_1080575_+	formate C-acetyltransferase	NA	A0A2P0VNR5	Tetraselmis_virus	42.6	9.4e-169
WP_071162738.1|1080705_1081446_+	pyruvate formate lyase 1-activating protein	NA	A0A2P0VNQ0	Tetraselmis_virus	26.7	6.8e-20
WP_071162737.1|1081477_1081960_+	hypothetical protein	NA	NA	NA	NA	NA
WP_071162736.1|1082039_1082828_-	outer membrane protein assembly factor BamD	NA	NA	NA	NA	NA
WP_013526546.1|1082935_1083910_+	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	NA	A0A2H4UV25	Bodo_saltans_virus	28.5	2.8e-05
>prophage 88
NZ_CP031254	Haemophilus influenzae strain M25588 chromosome, complete genome	1848871	1094697	1096068	1848871		Erysipelothrix_phage(100.0%)	1	NA	NA
WP_005694117.1|1094697_1096068_+	glutathione-disulfide reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	26.2	1.9e-39
>prophage 89
NZ_CP031254	Haemophilus influenzae strain M25588 chromosome, complete genome	1848871	1100638	1106385	1848871	protease	Prochlorococcus_phage(25.0%)	6	NA	NA
WP_071162729.1|1100638_1101367_+	3-oxoacyl-ACP reductase FabG	NA	A0A0K0KVL6	Prochlorococcus_phage	28.5	9.7e-11
WP_005544465.1|1101622_1101853_+	acyl carrier protein	NA	B2ZXV3	Ralstonia_phage	51.5	2.3e-11
WP_005654411.1|1102057_1103389_+	anaerobic C4-dicarboxylate transporter	NA	NA	NA	NA	NA
WP_071162728.1|1103448_1104156_+	4'-phosphopantetheinyl transferase superfamily protein	NA	NA	NA	NA	NA
WP_005668135.1|1104277_1105498_+|protease	FtsH protease activity modulator HflK	protease	K4F6D5	Cronobacter_phage	24.3	1.9e-06
WP_005660876.1|1105497_1106385_+|protease	protease modulator HflC	protease	A0A2I7S9Z3	Vibrio_phage	26.6	1.8e-06
>prophage 90
NZ_CP031254	Haemophilus influenzae strain M25588 chromosome, complete genome	1848871	1118889	1120182	1848871		Salmonella_phage(50.0%)	2	NA	NA
WP_071162723.1|1118889_1119351_-	ribonuclease HI	NA	J9Q745	Salmonella_phage	53.5	3.8e-45
WP_071162722.1|1119411_1120182_+	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	36.1	1.2e-38
>prophage 91
NZ_CP031254	Haemophilus influenzae strain M25588 chromosome, complete genome	1848871	1124823	1128362	1848871		Saccharomonospora_phage(25.0%)	4	NA	NA
WP_005660907.1|1124823_1125411_-	dCTP deaminase	NA	I4AZP2	Saccharomonospora_phage	40.5	2.8e-24
WP_005654445.1|1125419_1126061_-	uridine kinase	NA	A0A1V0SD85	Indivirus	35.2	4.5e-28
WP_071162718.1|1126281_1127598_-	NCS2 family permease	NA	A0A0R6PHV4	Moraxella_phage	80.7	5.3e-185
WP_005630160.1|1127831_1128362_+	inorganic diphosphatase	NA	A0A2H4J8U1	uncultured_Caudovirales_phage	36.9	3.7e-20
>prophage 92
NZ_CP031254	Haemophilus influenzae strain M25588 chromosome, complete genome	1848871	1134655	1139065	1848871	tRNA	Pandoravirus(50.0%)	3	NA	NA
WP_071163323.1|1134655_1135426_-|tRNA	tRNA cyclic N6-threonylcarbamoyladenosine(37) synthase TcdA	tRNA	A0A291ATS8	Pandoravirus	28.9	1.5e-17
WP_071162715.1|1135425_1136535_-	murein transglycosylase A	NA	NA	NA	NA	NA
WP_071162714.1|1136929_1139065_+	bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL	NA	W6LLI2	Streptococcus_phage	29.9	2.8e-18
>prophage 93
NZ_CP031254	Haemophilus influenzae strain M25588 chromosome, complete genome	1848871	1149330	1150620	1848871	tRNA	uncultured_Mediterranean_phage(100.0%)	1	NA	NA
WP_103708109.1|1149330_1150620_-|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	52.1	3.3e-94
>prophage 94
NZ_CP031254	Haemophilus influenzae strain M25588 chromosome, complete genome	1848871	1156640	1161892	1848871		uncultured_Mediterranean_phage(50.0%)	5	NA	NA
WP_071162708.1|1156640_1158521_+	molecular chaperone HtpG	NA	A0A1B1ISV4	uncultured_Mediterranean_phage	36.3	1.1e-114
WP_065250631.1|1158599_1158944_+	ArsC family reductase	NA	NA	NA	NA	NA
WP_114877361.1|1158971_1160105_+	succinyl-diaminopimelate desuccinylase	NA	NA	NA	NA	NA
WP_071162706.1|1160106_1160787_+	D-alanyl-D-alanine carboxypeptidase family protein	NA	NA	NA	NA	NA
WP_071162705.1|1160821_1161892_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	28.6	1.6e-25
>prophage 95
NZ_CP031254	Haemophilus influenzae strain M25588 chromosome, complete genome	1848871	1168032	1169169	1848871		Streptococcus_phage(100.0%)	1	NA	NA
WP_114877363.1|1168032_1169169_+	glycerate kinase	NA	W6LM47	Streptococcus_phage	43.7	1.4e-53
>prophage 96
NZ_CP031254	Haemophilus influenzae strain M25588 chromosome, complete genome	1848871	1175820	1185655	1848871	tRNA	Faustovirus(16.67%)	11	NA	NA
WP_071162698.1|1175820_1176930_+	methionine biosynthesis PLP-dependent protein	NA	A0A141ZJM2	Faustovirus	26.8	9.2e-13
WP_071162697.1|1176942_1177938_+	2-hydroxyacid dehydrogenase	NA	M1H502	Paramecium_bursaria_Chlorella_virus	39.9	4.9e-66
WP_005627940.1|1178057_1178381_+	thioredoxin	NA	A0A1J0GW78	Streptomyces_phage	43.4	8.9e-17
WP_071162696.1|1178430_1178706_-	hypothetical protein	NA	NA	NA	NA	NA
WP_114877365.1|1178716_1178974_-	hypothetical protein	NA	NA	NA	NA	NA
WP_071162694.1|1179035_1179824_-	TatD family hydrolase	NA	NA	NA	NA	NA
WP_114877367.1|1179965_1180397_-	hypothetical protein	NA	NA	NA	NA	NA
WP_071162692.1|1180400_1180910_-	peptidylprolyl isomerase	NA	A0A1B1IVS0	uncultured_Mediterranean_phage	32.9	5.5e-13
WP_071162691.1|1181012_1182392_+|tRNA	cysteine--tRNA ligase	tRNA	A0A1V0SAQ2	Catovirus	29.7	8.7e-53
WP_071162690.1|1182552_1183413_-	acyl-CoA thioesterase II	NA	NA	NA	NA	NA
WP_071162689.1|1183531_1185655_-	anaerobic ribonucleoside-triphosphate reductase	NA	A0A2I7QNQ7	Vibrio_phage	62.5	8.2e-260
>prophage 97
NZ_CP031254	Haemophilus influenzae strain M25588 chromosome, complete genome	1848871	1194078	1204790	1848871	tRNA	Bacillus_phage(40.0%)	8	NA	NA
WP_103708076.1|1194078_1195968_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	31.1	1.6e-65
WP_071162683.1|1195968_1197267_-	LysM peptidoglycan-binding domain-containing protein	NA	A0A0N6W8I1	Bacillus_phage	23.5	2.0e-14
WP_071162682.1|1197274_1197751_-|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_071162681.1|1197826_1198309_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_071163322.1|1198317_1199676_-	polynucleotide adenylyltransferase PcnB	NA	G3MAR3	Bacillus_virus	36.1	8.6e-29
WP_005630220.1|1199923_1200361_-	RNA polymerase-binding protein DksA	NA	NA	NA	NA	NA
WP_103708077.1|1200619_1202986_+	DNA internalization-related competence protein ComEC/Rec2	NA	Q332B9	Clostridium_botulinum_C_phage	30.3	2.3e-21
WP_103708078.1|1203026_1204790_+	lipid A ABC transporter ATP-binding protein/permease MsbA	NA	W8CYL7	Bacillus_phage	32.1	2.2e-61
>prophage 98
NZ_CP031254	Haemophilus influenzae strain M25588 chromosome, complete genome	1848871	1208769	1209483	1848871		Moraxella_phage(100.0%)	1	NA	NA
WP_103708081.1|1208769_1209483_+	TerC family protein	NA	A0A0R6PEZ3	Moraxella_phage	49.6	2.2e-47
>prophage 99
NZ_CP031254	Haemophilus influenzae strain M25588 chromosome, complete genome	1848871	1222204	1225516	1848871		uncultured_Caudovirales_phage(50.0%)	4	NA	NA
WP_005649826.1|1222204_1222867_+	BAX inhibitor protein	NA	A0A2H4JFM9	uncultured_Caudovirales_phage	54.4	1.1e-32
WP_005668005.1|1222926_1223991_+	TIGR01620 family protein	NA	NA	NA	NA	NA
WP_071162668.1|1223990_1224665_+	TIGR01621 family pseudouridine synthase	NA	NA	NA	NA	NA
WP_005657796.1|1224712_1225516_+	exodeoxyribonuclease III	NA	E3T4M6	Cafeteria_roenbergensis_virus	28.2	4.9e-16
>prophage 100
NZ_CP031254	Haemophilus influenzae strain M25588 chromosome, complete genome	1848871	1229160	1230939	1848871		Staphylococcus_phage(100.0%)	1	NA	NA
WP_071162667.1|1229160_1230939_-	ABC transporter ATP-binding protein/permease	NA	A0A2H4PQG7	Staphylococcus_phage	26.4	2.3e-05
>prophage 101
NZ_CP031254	Haemophilus influenzae strain M25588 chromosome, complete genome	1848871	1236888	1238949	1848871		Synechococcus_phage(50.0%)	2	NA	NA
WP_071162665.1|1236888_1237752_+	septal ring lytic transglycosylase RlpA family protein	NA	F5B3X9	Synechococcus_phage	52.5	5.9e-15
WP_005693881.1|1237767_1238949_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	47.7	1.4e-91
>prophage 102
NZ_CP031254	Haemophilus influenzae strain M25588 chromosome, complete genome	1848871	1249841	1254849	1848871		Equid_alphaherpesvirus(25.0%)	5	NA	NA
WP_071162659.1|1249841_1250501_-	uracil-DNA glycosylase	NA	A0A076JX67	Equid_alphaherpesvirus	47.9	1.4e-53
WP_005628746.1|1250757_1251141_+	autonomous glycyl radical cofactor GrcA	NA	A0A1W5N098	Cronobacter_phage	67.0	4.9e-30
WP_005652644.1|1251309_1253106_+	elongation factor 4	NA	A0A2K9L2P9	Tupanvirus	42.6	6.5e-24
WP_040035379.1|1253114_1254164_+	signal peptidase I	NA	NA	NA	NA	NA
WP_071162658.1|1254165_1254849_+	ribonuclease III	NA	M4QMG4	Micromonas_pusilla_virus	36.0	3.2e-24
>prophage 103
NZ_CP031254	Haemophilus influenzae strain M25588 chromosome, complete genome	1848871	1266164	1272678	1848871		Catovirus(33.33%)	5	NA	NA
WP_071162652.1|1266164_1267964_-	long-chain fatty acid--CoA ligase	NA	A0A1V0SBX8	Catovirus	25.2	8.1e-43
WP_071162651.1|1268157_1269177_-	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_071162650.1|1269427_1270054_+	guanylate kinase	NA	K4JYM5	Abalone_herpesvirus	35.6	7.5e-20
WP_005693900.1|1270116_1270383_+	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
WP_103708086.1|1270563_1272678_+	bifunctional GTP diphosphokinase/guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase	NA	A0A1B1IUF0	uncultured_Mediterranean_phage	39.5	5.1e-12
>prophage 104
NZ_CP031254	Haemophilus influenzae strain M25588 chromosome, complete genome	1848871	1285593	1290204	1848871		Streptococcus_phage(50.0%)	3	NA	NA
WP_013525630.1|1285593_1287177_-	peptide chain release factor 3	NA	A0A1S5SF82	Streptococcus_phage	25.8	7.4e-32
WP_005644958.1|1287355_1288144_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_071162645.1|1288224_1290204_+	exoribonuclease II	NA	Q0GXV6	Lactococcus_phage	25.9	6.4e-25
>prophage 105
NZ_CP031254	Haemophilus influenzae strain M25588 chromosome, complete genome	1848871	1298010	1303597	1848871		Dickeya_phage(33.33%)	5	NA	NA
WP_071162639.1|1298010_1299345_-	argininosuccinate synthase	NA	A0A140XAJ5	Dickeya_phage	79.4	8.4e-53
WP_005658286.1|1299500_1300373_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	A0A0M4JBD3	Mollivirus	36.3	3.9e-51
WP_071162638.1|1300545_1302891_-	penicillin-binding protein 1B	NA	NA	NA	NA	NA
WP_011272764.1|1302897_1303251_-	YacL family protein	NA	NA	NA	NA	NA
WP_071162637.1|1303252_1303597_-	iron-sulfur cluster insertion protein ErpA	NA	A0A2H4N7M3	Lake_Baikal_phage	48.6	1.7e-26
>prophage 106
NZ_CP031254	Haemophilus influenzae strain M25588 chromosome, complete genome	1848871	1309944	1310493	1848871		Diachasmimorpha_longicaudata_entomopoxvirus(100.0%)	1	NA	NA
WP_114877377.1|1309944_1310493_-	oligoribonuclease	NA	Q8B5Y0	Diachasmimorpha_longicaudata_entomopoxvirus	40.1	7.7e-29
>prophage 107
NZ_CP031254	Haemophilus influenzae strain M25588 chromosome, complete genome	1848871	1314896	1321157	1848871		Stx_converting_phage(25.0%)	5	NA	NA
WP_005649973.1|1314896_1315262_+	YgiW/YdeI family stress tolerance OB fold protein	NA	A0A1I9LJU6	Stx_converting_phage	34.2	7.7e-09
WP_071162631.1|1315324_1315990_+	response regulator	NA	NA	NA	NA	NA
WP_071162630.1|1315986_1317342_+	two-component system sensor histidine kinase QseC	NA	W8CYF6	Bacillus_phage	25.8	3.9e-13
WP_032823617.1|1317618_1319646_+	BCCT family transporter	NA	A0A2I7QNT1	Vibrio_phage	24.5	1.2e-18
WP_071162629.1|1319681_1321157_-	leucyl aminopeptidase	NA	Q6GYZ8	Mycoplasma_phage	36.8	1.1e-45
>prophage 108
NZ_CP031254	Haemophilus influenzae strain M25588 chromosome, complete genome	1848871	1325985	1327301	1848871	transposase	Bacillus_phage(100.0%)	1	NA	NA
WP_114877381.1|1325985_1327301_-|transposase	IS3 family transposase	transposase	A0A1B1P773	Bacillus_phage	49.0	3.0e-63
>prophage 109
NZ_CP031254	Haemophilus influenzae strain M25588 chromosome, complete genome	1848871	1336487	1337543	1848871		Planktothrix_phage(100.0%)	1	NA	NA
WP_071162619.1|1336487_1337543_+	molybdenum ABC transporter ATP-binding protein ModC	NA	G9BWD6	Planktothrix_phage	33.8	1.9e-23
>prophage 110
NZ_CP031254	Haemophilus influenzae strain M25588 chromosome, complete genome	1848871	1346158	1347220	1848871	protease	Bodo_saltans_virus(100.0%)	1	NA	NA
WP_015702474.1|1346158_1347220_-|protease	protease SohB	protease	A0A2H4UUF9	Bodo_saltans_virus	31.7	1.3e-19
>prophage 111
NZ_CP031254	Haemophilus influenzae strain M25588 chromosome, complete genome	1848871	1350403	1354635	1848871		Dickeya_phage(33.33%)	4	NA	NA
WP_071162612.1|1350403_1350946_-	HAD family hydrolase	NA	A0A140XBD6	Dickeya_phage	42.2	2.6e-21
WP_046939494.1|1350955_1351891_-	KpsF/GutQ family sugar isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	35.5	1.0e-41
WP_071162611.1|1352505_1353177_-	iron-sulfur cluster repair protein YtfE	NA	NA	NA	NA	NA
WP_071163321.1|1353621_1354635_+	GTP 3',8-cyclase MoaA	NA	D5GVS6	Campylobacter_virus	31.5	2.6e-06
>prophage 112
NZ_CP031254	Haemophilus influenzae strain M25588 chromosome, complete genome	1848871	1360693	1362775	1848871		Moraxella_phage(100.0%)	1	NA	NA
WP_071162609.1|1360693_1362775_+	carboxy terminal-processing peptidase	NA	A0A0R6PIZ1	Moraxella_phage	32.3	3.2e-83
>prophage 113
NZ_CP031254	Haemophilus influenzae strain M25588 chromosome, complete genome	1848871	1371225	1374768	1848871		Pseudomonas_phage(50.0%)	2	NA	NA
WP_071162604.1|1371225_1372356_-	ribonucleotide-diphosphate reductase subunit beta	NA	G9IAA3	Pseudomonas_phage	78.6	2.1e-169
WP_011272724.1|1372497_1374768_-	ribonucleoside-diphosphate reductase subunit alpha	NA	I3UMG3	Colwellia_phage	66.8	2.3e-300
>prophage 114
NZ_CP031254	Haemophilus influenzae strain M25588 chromosome, complete genome	1848871	1378415	1381484	1848871	protease	Streptococcus_phage(50.0%)	3	NA	NA
WP_012054701.1|1378415_1379267_+	16S rRNA (cytidine(1402)-2'-O)-methyltransferase	NA	M1PLC5	Streptococcus_phage	45.4	4.2e-50
WP_015702455.1|1379368_1380817_+|protease	metalloprotease TldD	protease	NA	NA	NA	NA
WP_071162601.1|1380932_1381484_+	endopeptidase	NA	A0A217EQL1	Bacillus_phage	34.2	1.3e-12
>prophage 115
NZ_CP031254	Haemophilus influenzae strain M25588 chromosome, complete genome	1848871	1387093	1392120	1848871	tRNA	Klosneuvirus(33.33%)	5	NA	NA
WP_071162599.1|1387093_1388098_-	class 1 fructose-bisphosphatase	NA	A0A1V0SKX4	Klosneuvirus	43.9	2.3e-71
WP_050837736.1|1388332_1389142_+|tRNA	tRNA pseudouridine(38-40) synthase TruA	tRNA	NA	NA	NA	NA
WP_071162598.1|1389233_1390250_-	YeiH family protein	NA	NA	NA	NA	NA
WP_005670537.1|1390261_1391071_-	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	27.6	2.8e-11
WP_071162597.1|1391070_1392120_-	ATP-binding cassette domain-containing protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	22.9	1.7e-08
>prophage 116
NZ_CP031254	Haemophilus influenzae strain M25588 chromosome, complete genome	1848871	1400000	1403553	1848871		Enterobacteria_phage(50.0%)	3	NA	NA
WP_038441314.1|1400000_1401011_-	HTH-type transcriptional repressor PurR	NA	C6ZCU4	Enterobacteria_phage	33.2	8.9e-39
WP_005632504.1|1401370_1402198_+	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	NA	NA	NA	NA	NA
WP_114877385.1|1402254_1403553_-	adenylosuccinate synthase	NA	A0A285PX35	Cedratvirus	34.7	5.8e-67
>prophage 117
NZ_CP031254	Haemophilus influenzae strain M25588 chromosome, complete genome	1848871	1411167	1427849	1848871	tRNA	Organic_Lake_phycodnavirus(14.29%)	15	NA	NA
WP_061724123.1|1411167_1411785_+	energy-coupling factor ABC transporter ATP-binding protein	NA	F2Y2R6	Organic_Lake_phycodnavirus	28.3	5.1e-13
WP_071162592.1|1412005_1413196_-	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
WP_071162591.1|1413335_1414424_-	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA	NA
WP_071162590.1|1414493_1414988_-	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	41.1	2.2e-19
WP_071162589.1|1415148_1417758_+	aminopeptidase N	NA	NA	NA	NA	NA
WP_114877387.1|1417829_1418444_-	riboflavin synthase	NA	A0A2I2L4R9	Orpheovirus	37.3	4.0e-26
WP_114877389.1|1418487_1419882_+	sodium-coupled multidrug efflux MATE transporter HmrM	NA	NA	NA	NA	NA
WP_103707997.1|1419890_1420607_+	DNA/RNA nuclease SfsA	NA	NA	NA	NA	NA
WP_021035315.1|1420806_1421994_+|tRNA	tyrosine--tRNA ligase	tRNA	S4VZK2	Pandoravirus	27.6	1.3e-09
WP_005647284.1|1422058_1423006_-	ribose-phosphate pyrophosphokinase	NA	A0A2K9L2G2	Tupanvirus	37.7	3.4e-40
WP_162689892.1|1423007_1423961_-	4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase	NA	NA	NA	NA	NA
WP_071162586.1|1423960_1424581_-	outer membrane lipoprotein LolB	NA	NA	NA	NA	NA
WP_071162585.1|1424652_1425903_-	multifunctional CCA addition/repair protein	NA	A0A0F6YPT7	Sinorhizobium_phage	47.6	1.9e-94
WP_071162584.1|1425909_1426521_-	SH3 domain-containing protein	NA	NA	NA	NA	NA
WP_114877391.1|1426586_1427849_-	inorganic phosphate transporter	NA	M4QMY4	Ostreococcus_lucimarinus_virus	33.9	1.0e-55
>prophage 118
NZ_CP031254	Haemophilus influenzae strain M25588 chromosome, complete genome	1848871	1434675	1544295	1848871	integrase,terminase,portal,protease,tRNA,tail,holin,bacteriocin,transposase	Mannheimia_phage(21.05%)	117	1439512:1439530	1509756:1509774
WP_071162579.1|1434675_1437444_+	DNA translocase FtsK	NA	A0A218M9A2	Mycobacterium_phage	42.8	2.5e-83
WP_071162578.1|1437461_1438079_+	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA	NA
WP_103707998.1|1438139_1439480_+	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	39.8	1.1e-81
1439512:1439530	attL	AAAGTGCGGTCAATTTTAA	NA	NA	NA	NA
WP_114877393.1|1439562_1440861_-	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
WP_005661478.1|1440860_1441697_-	formyltetrahydrofolate deformylase	NA	M4QRX9	Synechococcus_phage	33.6	4.5e-12
WP_005647241.1|1441766_1442171_-	H-NS histone family protein	NA	NA	NA	NA	NA
WP_071162575.1|1442613_1444134_+	Na+/H+ antiporter NhaC family protein	NA	NA	NA	NA	NA
WP_005671546.1|1444399_1446121_+	acetolactate synthase 3 large subunit	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	29.2	2.8e-56
WP_005647229.1|1446120_1446612_+	acetolactate synthase small subunit	NA	NA	NA	NA	NA
WP_071162574.1|1446897_1448631_-|tRNA	arginine--tRNA ligase	tRNA	A0A1V0SIS8	Klosneuvirus	35.7	4.0e-87
WP_005647225.1|1448710_1449280_+	VOC family protein	NA	NA	NA	NA	NA
WP_042601686.1|1449606_1450071_+	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_071162573.1|1450257_1451229_-	glycosyltransferase family 2 protein	NA	A0A1V0SAH6	Catovirus	37.3	2.6e-11
WP_071162572.1|1451879_1453529_-	glucose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_071162571.1|1453625_1454708_-	alanine racemase	NA	A0A0P0YM39	Yellowstone_lake_mimivirus	29.0	1.3e-32
WP_005653304.1|1454717_1456124_-	replicative DNA helicase	NA	O80281	Escherichia_phage	68.5	2.6e-169
WP_071162570.1|1456265_1457702_-	pyruvate kinase	NA	NA	NA	NA	NA
WP_114877395.1|1458241_1459495_+|integrase	tyrosine-type recombinase/integrase	integrase	A0A1V0E8G8	Vibrio_phage	37.1	1.3e-74
WP_162627466.1|1459491_1459680_-	AlpA family phage regulatory protein	NA	NA	NA	NA	NA
WP_112072242.1|1459735_1460161_-	hypothetical protein	NA	A0A0E3T9S3	Pseudomonas_phage	36.4	2.9e-15
WP_114877397.1|1460157_1460727_-	hypothetical protein	NA	NA	NA	NA	NA
WP_112072240.1|1460829_1461264_-	single-stranded DNA-binding protein	NA	A0A2I7RK19	Vibrio_phage	41.5	6.3e-18
WP_114877399.1|1461263_1461914_-	translocation protein TolB precursor	NA	A0A0M3LP90	Mannheimia_phage	70.6	2.0e-84
WP_112072238.1|1461888_1462809_-	recombinase	NA	A0A0M3LNU3	Mannheimia_phage	71.9	2.8e-116
WP_105896926.1|1462821_1463115_-	hypothetical protein	NA	NA	NA	NA	NA
WP_114877401.1|1463111_1463456_-	hypothetical protein	NA	NA	NA	NA	NA
WP_114877403.1|1463543_1464173_-|bacteriocin	bacteriocin	bacteriocin	A0A0P0ZCS0	Stx2-converting_phage	50.0	3.5e-17
WP_052095401.1|1464443_1464746_-	hypothetical protein	NA	NA	NA	NA	NA
WP_114877405.1|1465021_1465243_+	hypothetical protein	NA	NA	NA	NA	NA
WP_114877407.1|1465775_1466300_+	hypothetical protein	NA	Q7Y5W8	Haemophilus_phage	60.7	8.4e-49
WP_114877411.1|1467187_1467967_-	hypothetical protein	NA	NA	NA	NA	NA
WP_114877414.1|1468043_1468700_-	LexA family transcriptional regulator	NA	A0A0M3LSL8	Mannheimia_phage	58.4	3.3e-66
WP_005662314.1|1468831_1469038_+	helix-turn-helix transcriptional regulator	NA	A0A0M3LSY2	Mannheimia_phage	67.7	1.9e-17
WP_114877416.1|1469086_1469527_+	hypothetical protein	NA	K7PJS5	Enterobacterial_phage	32.9	2.8e-13
WP_048952997.1|1469594_1469825_+	hypothetical protein	NA	A0A088FAW9	Sulfitobacter_phage	48.5	1.3e-09
WP_162790435.1|1469826_1469985_+	hypothetical protein	NA	NA	NA	NA	NA
WP_114877418.1|1470757_1472131_+	AAA family ATPase	NA	A0A0M3LQC0	Mannheimia_phage	50.8	2.3e-122
WP_101161368.1|1472127_1472352_+	hypothetical protein	NA	A0A0M3LR43	Mannheimia_phage	49.3	1.0e-11
WP_114877420.1|1472348_1473272_+	N-6 DNA methylase	NA	A0A0M3LQ47	Mannheimia_phage	57.9	6.6e-97
WP_114877422.1|1473276_1473696_+	recombination protein NinB	NA	Q7Y5V7	Haemophilus_phage	86.2	5.1e-65
WP_114877424.1|1473784_1474327_+	recombination protein NinG	NA	D0UIK8	Aggregatibacter_phage	71.8	6.8e-62
WP_114877426.1|1474323_1474695_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005653907.1|1474794_1474977_+	type II toxin-antitoxin system HicA family toxin	NA	NA	NA	NA	NA
WP_114877428.1|1475008_1475458_+	CopG family transcriptional regulator	NA	NA	NA	NA	NA
WP_114877430.1|1475756_1476386_+|bacteriocin	bacteriocin	bacteriocin	A0A0P0ZCS0	Stx2-converting_phage	48.1	2.0e-17
WP_101160772.1|1476708_1476915_+	hypothetical protein	NA	NA	NA	NA	NA
WP_101160776.1|1476892_1477372_-	hypothetical protein	NA	NA	NA	NA	NA
WP_032827954.1|1477476_1477836_+|holin	phage holin, lambda family	holin	NA	NA	NA	NA
WP_112072224.1|1477801_1478404_+	glycoside hydrolase family 19 protein	NA	Q7Y5V0	Haemophilus_phage	55.4	3.0e-58
WP_114877434.1|1478396_1478720_+	DUF2570 family protein	NA	Q7Y5U9	Haemophilus_phage	59.8	1.7e-23
WP_112072223.1|1478631_1478913_+	hypothetical protein	NA	Q776X1	Haemophilus_phage	71.1	2.3e-29
WP_114877436.1|1479223_1479685_+	DUF1441 family protein	NA	NA	NA	NA	NA
WP_114877438.1|1479665_1481786_+|terminase	phage terminase large subunit family protein	terminase	K7PH52	Enterobacterial_phage	67.0	6.4e-273
WP_112072221.1|1481909_1482428_+	hypothetical protein	NA	A0A1B1P9D9	Acinetobacter_phage	37.9	9.2e-24
WP_015701513.1|1482466_1482688_+	hypothetical protein	NA	NA	NA	NA	NA
WP_114877440.1|1482710_1484192_+|portal	phage portal protein	portal	K7PJP3	Enterobacteria_phage	59.1	6.9e-157
WP_154017416.1|1484265_1484412_+	hypothetical protein	NA	NA	NA	NA	NA
WP_041175036.1|1484414_1486391_+|protease	Clp protease ClpP	protease	A0A1W6JT88	Pseudomonas_phage	57.1	2.4e-197
WP_114877442.1|1486469_1486793_+	DUF2190 family protein	NA	K7PJY3	Enterobacterial_phage	42.7	9.5e-11
WP_015701509.1|1486773_1487085_+	hypothetical protein	NA	NA	NA	NA	NA
WP_015701508.1|1487087_1487618_+|tail	tail protein	tail	K7PKQ5	Enterobacteria_phage	50.0	2.7e-18
WP_005651206.1|1487626_1488037_+|tail	phage tail protein	tail	NA	NA	NA	NA
WP_114877444.1|1488039_1488690_+	hypothetical protein	NA	NA	NA	NA	NA
WP_114877446.1|1488964_1489372_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005651221.1|1489416_1489641_+	DUF4035 domain-containing protein	NA	NA	NA	NA	NA
WP_015701504.1|1489709_1490093_+	diaminopimelate decarboxylase	NA	NA	NA	NA	NA
WP_005651224.1|1490076_1490379_+	XRE family transcriptional regulator	NA	NA	NA	NA	NA
WP_101494098.1|1490394_1490631_+	hypothetical protein	NA	NA	NA	NA	NA
WP_114877448.1|1490682_1492611_+	tape measure protein	NA	A0A1C6ZDP8	Pseudomonas_phage	50.0	2.4e-48
WP_114877450.1|1492580_1492955_+|tail	phage minor tail protein L	tail	A0A1W6JNT8	Morganella_phage	58.4	4.6e-33
WP_112102023.1|1492957_1493707_+	C40 family peptidase	NA	A0A0M3LQI5	Mannheimia_phage	59.0	2.2e-79
WP_112072211.1|1493643_1494258_+|tail	tail assembly protein	tail	A0A0M3LPS1	Mannheimia_phage	53.6	3.9e-53
WP_114877506.1|1497449_1499210_+	DUF1983 domain-containing protein	NA	A0A0M3LQG1	Mannheimia_phage	63.0	1.8e-15
WP_112072210.1|1499206_1499626_+	hypothetical protein	NA	A0A0M3LS02	Mannheimia_phage	33.3	3.4e-08
WP_112072209.1|1499625_1500222_+	hypothetical protein	NA	A0A0M3LR33	Mannheimia_phage	43.9	3.6e-40
WP_112072208.1|1500232_1500571_+	hypothetical protein	NA	NA	NA	NA	NA
WP_114877452.1|1501954_1503282_-|transposase	IS3 family transposase	transposase	A0A1B1P773	Bacillus_phage	49.0	3.1e-63
WP_114877454.1|1503586_1504057_-	pyruvate kinase	NA	NA	NA	NA	NA
WP_103708135.1|1504056_1504305_+	DUF935 family protein	NA	B7SDN1	Haemophilus_phage	68.4	2.0e-21
WP_071162565.1|1504301_1505003_+	hypothetical protein	NA	B7SDN5	Haemophilus_phage	60.8	9.1e-75
WP_114877456.1|1505276_1505813_+	elongation factor P hydroxylase	NA	NA	NA	NA	NA
WP_071162564.1|1506014_1506674_+	sel1 repeat family protein	NA	NA	NA	NA	NA
WP_114877458.1|1506861_1507737_+	sel1 repeat family protein	NA	NA	NA	NA	NA
WP_071163319.1|1508015_1509098_+	peptide chain release factor 1	NA	G0YKC3	Acinetobacter_phage	52.8	6.2e-06
WP_071162562.1|1509150_1509591_+	RDD family protein	NA	NA	NA	NA	NA
WP_103708091.1|1509590_1510469_+	peptide chain release factor N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
1509756:1509774	attR	TTAAAATTGACCGCACTTT	NA	NA	NA	NA
WP_005654786.1|1510468_1511272_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_005693586.1|1511286_1512141_+	3-deoxy-8-phosphooctulonate synthase	NA	E3T537	Cafeteria_roenbergensis_virus	39.3	1.7e-46
WP_071162559.1|1512200_1513148_+	2-hydroxyacid dehydrogenase	NA	A0A2R8FDS8	Brazilian_cedratvirus	31.1	6.6e-28
WP_071162558.1|1513147_1514329_+	lipoprotein-releasing ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_071162557.1|1514347_1515640_+	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	NA	NA	NA	NA
WP_071162556.1|1515648_1516791_+	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
WP_103708093.1|1516800_1517448_+	DUF452 family protein	NA	NA	NA	NA	NA
WP_071162554.1|1517435_1518209_+	malonyl-ACP O-methyltransferase BioC	NA	NA	NA	NA	NA
WP_071162553.1|1518227_1518869_+	ATP-dependent dethiobiotin synthetase BioD	NA	NA	NA	NA	NA
WP_005693575.1|1518950_1519634_+	lipoprotein-releasing ABC transporter ATP-binding protein LolD	NA	G9BWD6	Planktothrix_phage	40.1	5.6e-37
WP_071162552.1|1519633_1520884_+	lipoprotein-releasing ABC transporter permease subunit LolE	NA	NA	NA	NA	NA
WP_005687779.1|1521101_1522190_+	3-deoxy-7-phosphoheptulonate synthase AroG	NA	A0A1Z1LYN9	Serratia_phage	47.0	7.8e-81
WP_071162551.1|1522259_1522700_-	LexA family transcriptional regulator	NA	NA	NA	NA	NA
WP_011272546.1|1522984_1524229_+	serine/threonine transporter SstT	NA	NA	NA	NA	NA
WP_114877460.1|1524350_1524959_+	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_071162549.1|1524958_1525513_+	molecular chaperone	NA	NA	NA	NA	NA
WP_071162548.1|1525560_1526115_-	NAD(P)H nitroreductase	NA	NA	NA	NA	NA
WP_071162547.1|1526212_1528060_+	signal peptide peptidase SppA	NA	A0A2I6UG67	Salinibacter_virus	27.6	3.0e-16
WP_071162546.1|1528097_1528895_-|holin	phosphorylcholine transferase LicD	holin	A0A1V0SD50	Indivirus	35.5	9.3e-07
WP_071162545.1|1528894_1529596_-	NTP transferase domain-containing protein	NA	NA	NA	NA	NA
WP_071162544.1|1529592_1530471_-	DMT family transporter	NA	NA	NA	NA	NA
WP_071162543.1|1530470_1531451_-	phosphotransferase family protein	NA	NA	NA	NA	NA
WP_071162542.1|1531521_1533534_-|tRNA	bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC	tRNA	NA	NA	NA	NA
WP_005693560.1|1533682_1534903_+	beta-ketoacyl-ACP synthase I	NA	NA	NA	NA	NA
WP_048954950.1|1534969_1535233_-	glutaredoxin, GrxA family	NA	A0A2I7SAE2	Vibrio_phage	70.1	7.2e-25
WP_071162541.1|1535347_1536256_+	RimK family alpha-L-glutamate ligase	NA	A0A1D7SR78	Cyanophage	31.1	1.7e-33
WP_071162540.1|1536294_1537509_-	sodium/glutamate symporter	NA	NA	NA	NA	NA
WP_071162539.1|1537550_1539794_-	DNA topoisomerase IV subunit A	NA	G3M9Z5	Bacillus_virus	35.4	3.1e-84
WP_071162538.1|1539860_1541759_-	DNA topoisomerase IV subunit B	NA	G3M9Z3	Bacillus_virus	36.1	1.6e-97
WP_071162537.1|1541832_1542768_-	LpxL/LpxP family Kdo(2)-lipid IV(A) lauroyl/palmitoleoyl acyltransferasee	NA	A0A1W6JP29	Morganella_phage	40.8	1.5e-53
WP_071162536.1|1542864_1544295_+	bifunctional D-glycero-beta-D-manno-heptose-7-phosphate kinase/D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase HldE	NA	E3SJ88	Synechococcus_phage	44.6	4.1e-21
>prophage 119
NZ_CP031254	Haemophilus influenzae strain M25588 chromosome, complete genome	1848871	1548884	1550847	1848871		Mycoplasma_phage(100.0%)	2	NA	NA
WP_005694014.1|1548884_1549745_-	spermidine/putrescine ABC transporter permease PotB	NA	Q6GZ02	Mycoplasma_phage	28.2	4.5e-15
WP_162689885.1|1549728_1550847_-	spermidine/putrescine ABC transporter ATP-binding protein PotA	NA	Q6GZ03	Mycoplasma_phage	37.1	1.9e-29
>prophage 120
NZ_CP031254	Haemophilus influenzae strain M25588 chromosome, complete genome	1848871	1554640	1555968	1848871	transposase	Bacillus_phage(100.0%)	1	NA	NA
WP_114877452.1|1554640_1555968_-|transposase	IS3 family transposase	transposase	A0A1B1P773	Bacillus_phage	49.0	3.1e-63
>prophage 121
NZ_CP031254	Haemophilus influenzae strain M25588 chromosome, complete genome	1848871	1560525	1562196	1848871	tRNA	Escherichia_phage(100.0%)	1	NA	NA
WP_071163317.1|1560525_1562196_+|tRNA	glutamine--tRNA ligase	tRNA	A0A222YZ70	Escherichia_phage	77.3	1.1e-254
>prophage 122
NZ_CP031254	Haemophilus influenzae strain M25588 chromosome, complete genome	1848871	1572274	1574740	1848871		Dickeya_phage(100.0%)	1	NA	NA
WP_114877468.1|1572274_1574740_+	glycogen/starch/alpha-glucan phosphorylase	NA	A0A140XAG6	Dickeya_phage	54.2	5.0e-19
>prophage 123
NZ_CP031254	Haemophilus influenzae strain M25588 chromosome, complete genome	1848871	1579051	1584533	1848871	tRNA	Catovirus(50.0%)	3	NA	NA
WP_071162520.1|1579051_1581658_+	type I DNA topoisomerase	NA	A0A1V0SB35	Catovirus	34.5	6.4e-89
WP_103708020.1|1581732_1582317_-	FMN-dependent NADH-azoreductase	NA	NA	NA	NA	NA
WP_103708021.1|1582601_1584533_+|tRNA	threonine--tRNA ligase	tRNA	A0A2K9L297	Tupanvirus	38.6	1.3e-131
>prophage 124
NZ_CP031254	Haemophilus influenzae strain M25588 chromosome, complete genome	1848871	1590415	1591688	1848871	tRNA	uncultured_Caudovirales_phage(50.0%)	2	NA	NA
WP_005662227.1|1590415_1590745_-	TusE/DsrC/DsvC family sulfur relay protein	NA	A0A2H4J8B6	uncultured_Caudovirales_phage	53.7	5.3e-25
WP_015702249.1|1590746_1591688_-|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	83.5	1.9e-123
>prophage 125
NZ_CP031254	Haemophilus influenzae strain M25588 chromosome, complete genome	1848871	1602462	1619583	1848871	tRNA	Acinetobacter_phage(33.33%)	16	NA	NA
WP_013527694.1|1602462_1603740_-	phosphate regulon sensor histidine kinase PhoR	NA	W8CYF6	Bacillus_phage	30.6	7.1e-25
WP_005650606.1|1603736_1604432_-	phosphate regulon transcriptional regulatory protein PhoB	NA	NA	NA	NA	NA
WP_005650603.1|1604528_1605296_-	phosphate ABC transporter ATP-binding protein PstB	NA	G3M9Y6	Bacillus_virus	30.0	1.6e-16
WP_005650601.1|1605305_1606154_-	phosphate ABC transporter permease PstA	NA	NA	NA	NA	NA
WP_005656744.1|1606155_1607103_-	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
WP_071162509.1|1607194_1608214_-	phosphate ABC transporter substrate-binding protein PstS	NA	A0A222YW41	Synechococcus_phage	40.1	1.2e-51
WP_005650594.1|1608717_1609206_+	non-heme ferritin	NA	NA	NA	NA	NA
WP_005650592.1|1609221_1609719_+	non-heme ferritin	NA	NA	NA	NA	NA
WP_071162508.1|1610313_1611870_+	anthranilate synthase component I	NA	A0A0B5J984	Pandoravirus	33.2	1.8e-22
WP_005650586.1|1611882_1612464_+	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	40.4	2.0e-35
WP_005666933.1|1612512_1612899_+	tautomerase family protein	NA	NA	NA	NA	NA
WP_071162507.1|1612951_1613953_+	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	34.4	4.4e-46
WP_071163315.1|1613992_1615423_+	bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF	NA	A0A0P0IR83	Acinetobacter_phage	38.3	4.2e-34
WP_071162506.1|1615484_1615757_+	hydrogenase maturation factor HybG	NA	NA	NA	NA	NA
WP_071162505.1|1615788_1618653_-|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.4	6.0e-149
WP_071162504.1|1618653_1619583_-	site-specific DNA-methyltransferase	NA	E5ERN0	Ostreococcus_lucimarinus_virus	29.9	2.3e-25
>prophage 126
NZ_CP031254	Haemophilus influenzae strain M25588 chromosome, complete genome	1848871	1627314	1641429	1848871	holin	Haemophilus_phage(40.0%)	19	NA	NA
WP_071162497.1|1627314_1627647_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	O64357	Escherichia_phage	36.7	5.4e-09
WP_103708026.1|1627657_1627948_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_071162496.1|1629272_1629728_-	DUF2612 domain-containing protein	NA	D0UIH4	Aggregatibacter_phage	77.9	2.7e-59
WP_071162495.1|1629740_1630841_-	DUF2213 domain-containing protein	NA	Q7Y5U2	Haemophilus_phage	86.5	2.0e-140
WP_071162494.1|1630901_1631258_-	DUF2513 domain-containing protein	NA	A0A2H4J4K9	uncultured_Caudovirales_phage	28.9	3.9e-05
WP_071162493.1|1631254_1631563_-	hypothetical protein	NA	NA	NA	NA	NA
WP_080481712.1|1631563_1631863_-	hypothetical protein	NA	NA	NA	NA	NA
WP_071162492.1|1632842_1634174_-	DUF1073 domain-containing protein	NA	Q7Y5U6	Haemophilus_phage	83.8	4.1e-209
WP_103708033.1|1635011_1635254_+	helix-turn-helix transcriptional regulator	NA	A0A1S5NNJ5	Burkholderia_phage	58.0	6.2e-15
WP_071162491.1|1635255_1635537_-	hypothetical protein	NA	Q776X1	Haemophilus_phage	70.0	7.9e-30
WP_071162490.1|1635436_1635772_-	DUF2570 family protein	NA	Q7Y5U9	Haemophilus_phage	55.1	2.1e-21
WP_071162489.1|1635764_1636367_-	glycoside hydrolase family 19 protein	NA	Q7Y5V0	Haemophilus_phage	53.9	1.3e-56
WP_071162488.1|1636335_1636692_-|holin	phage holin, lambda family	holin	NA	NA	NA	NA
WP_071162487.1|1636953_1637463_-	antitermination protein	NA	A0A077KC63	Edwardsiella_phage	36.2	3.5e-15
WP_071162486.1|1637463_1638009_-	protein NinG	NA	D0UIK8	Aggregatibacter_phage	71.9	7.4e-64
WP_005656663.1|1638097_1638517_-	recombination protein NinB	NA	Q7Y5V7	Haemophilus_phage	76.1	5.1e-57
WP_162689890.1|1638773_1639334_-	replication P	NA	D0UIL4	Aggregatibacter_phage	47.7	9.3e-30
WP_080306578.1|1640435_1640642_-	helix-turn-helix transcriptional regulator	NA	A0A0M3LSY2	Mannheimia_phage	66.2	7.4e-17
WP_071162483.1|1640772_1641429_+	LexA family transcriptional regulator	NA	A0A0M3LSL8	Mannheimia_phage	57.9	1.6e-65
>prophage 127
NZ_CP031254	Haemophilus influenzae strain M25588 chromosome, complete genome	1848871	1649678	1651406	1848871		Prochlorococcus_phage(100.0%)	2	NA	NA
WP_071162481.1|1649678_1650317_-	phosphoribosylglycinamide formyltransferase	NA	E3SNR5	Prochlorococcus_phage	39.4	4.5e-28
WP_071162480.1|1650371_1651406_-	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	45.3	6.7e-74
>prophage 128
NZ_CP031254	Haemophilus influenzae strain M25588 chromosome, complete genome	1848871	1656668	1659825	1848871	tRNA	uncultured_Caudovirales_phage(50.0%)	4	NA	NA
WP_114877476.1|1656668_1657775_+	type IV pili	NA	A0A2H4J4K4	uncultured_Caudovirales_phage	56.0	3.6e-41
WP_071162476.1|1657961_1658915_-	oxidoreductase	NA	NA	NA	NA	NA
WP_005631703.1|1658973_1659450_+|tRNA	Cys-tRNA(Pro) deacylase	tRNA	NA	NA	NA	NA
WP_005652728.1|1659606_1659825_-	cold shock domain-containing protein CspD	NA	Q9AZD3	Lactococcus_phage	51.6	1.4e-10
>prophage 129
NZ_CP031254	Haemophilus influenzae strain M25588 chromosome, complete genome	1848871	1665888	1666341	1848871	protease	Pseudomonas_phage(100.0%)	1	NA	NA
WP_005652745.1|1665888_1666341_-|protease	ClpXP protease specificity-enhancing factor	protease	A0A1S5R3H3	Pseudomonas_phage	56.1	2.5e-25
>prophage 130
NZ_CP031254	Haemophilus influenzae strain M25588 chromosome, complete genome	1848871	1670585	1671242	1848871		Cellulophaga_phage(100.0%)	1	NA	NA
WP_005666869.1|1670585_1671242_-	GTP cyclohydrolase I FolE	NA	M1Q6X8	Cellulophaga_phage	49.8	5.0e-51
>prophage 131
NZ_CP031254	Haemophilus influenzae strain M25588 chromosome, complete genome	1848871	1682129	1686351	1848871	protease	Bacillus_phage(33.33%)	3	NA	NA
WP_071162462.1|1682129_1683467_-	phosphoglucosamine mutase	NA	A0A127AWJ1	Bacillus_phage	22.8	1.1e-12
WP_071162461.1|1683504_1684332_-	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	27.1	1.4e-13
WP_011962130.1|1684443_1686351_-|protease	ATP-dependent zinc metalloprotease FtsH	protease	M4QMW8	Micromonas_pusilla_virus	42.3	1.1e-114
>prophage 132
NZ_CP031254	Haemophilus influenzae strain M25588 chromosome, complete genome	1848871	1695008	1702048	1848871		Virus_Rctr197k(33.33%)	5	NA	NA
WP_071162456.1|1695008_1696931_-	exodeoxyribonuclease V subunit alpha	NA	A0A1P8DII4	Virus_Rctr197k	25.5	2.5e-18
WP_071163310.1|1696930_1700566_-	exodeoxyribonuclease V subunit beta	NA	A0A1V0SG90	Hokovirus	25.2	1.5e-06
WP_005596075.1|1700678_1701032_-	50S ribosomal protein L20	NA	NA	NA	NA	NA
WP_005596065.1|1701097_1701295_-	50S ribosomal protein L35	NA	NA	NA	NA	NA
WP_010869182.1|1701505_1702048_-	translation initiation factor IF-3	NA	A0A2L0UZ54	Agrobacterium_phage	33.9	1.4e-14
>prophage 133
NZ_CP031254	Haemophilus influenzae strain M25588 chromosome, complete genome	1848871	1705196	1717329	1848871	integrase,tRNA,transposase	Burkholderia_phage(12.5%)	13	1692784:1692798	1716769:1716783
1692784:1692798	attL	TTTTACCGCACTTTT	NA	NA	NA	NA
WP_071163308.1|1705196_1705424_-|transposase	IS3 family transposase	transposase	A9YX41	Burkholderia_phage	42.5	6.9e-08
WP_071163307.1|1705714_1706755_-	ACR3 family arsenite efflux transporter	NA	NA	NA	NA	NA
WP_071163306.1|1707474_1707840_-	arsenite efflux transporter metallochaperone ArsD	NA	NA	NA	NA	NA
WP_071163305.1|1707936_1708218_-	winged helix-turn-helix transcriptional regulator	NA	A0A2H4PQT4	Staphylococcus_phage	41.3	3.6e-06
WP_103708031.1|1708626_1709586_-|integrase,transposase	DDE-type integrase/transposase/recombinase	integrase,transposase	U5P429	Shigella_phage	35.3	3.6e-05
WP_005657409.1|1709582_1709783_-	cell division protein FtsK	NA	NA	NA	NA	NA
WP_071163304.1|1710744_1711581_-	hypothetical protein	NA	A0A0D4DB39	Vibrio_phage	49.3	6.0e-33
WP_005688175.1|1711905_1712391_-	endopeptidase	NA	A0A2H5BM69	Streptomyces_phage	39.3	2.3e-16
WP_005652847.1|1712443_1712734_-	integration host factor subunit alpha	NA	Q2A099	Sodalis_phage	38.2	1.9e-10
WP_103708032.1|1712735_1715123_-|tRNA	phenylalanine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_071163301.1|1715156_1716146_-|tRNA	phenylalanine--tRNA ligase subunit alpha	tRNA	A0A2H4UW22	Bodo_saltans_virus	38.0	5.5e-33
WP_071163300.1|1716294_1717035_-	hypothetical protein	NA	NA	NA	NA	NA
1716769:1716783	attR	TTTTACCGCACTTTT	NA	NA	NA	NA
WP_005662492.1|1717080_1717329_+	2Fe-2S ferredoxin-like protein	NA	G9IAA2	Pseudomonas_phage	50.6	3.5e-13
>prophage 134
NZ_CP031254	Haemophilus influenzae strain M25588 chromosome, complete genome	1848871	1720760	1736618	1848871	tRNA,lysis	Staphylococcus_phage(28.57%)	16	NA	NA
WP_011272561.1|1720760_1721234_-	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	45.4	3.9e-29
WP_071163296.1|1721460_1722864_+|tRNA	asparagine--tRNA ligase	tRNA	A0A1V0SDB6	Indivirus	38.5	3.7e-83
WP_005631770.1|1722939_1723629_+	carbonate dehydratase	NA	NA	NA	NA	NA
WP_114877482.1|1723656_1725600_-	ABC transporter ATP-binding protein	NA	A0A2K9L3Z8	Tupanvirus	29.6	4.6e-52
WP_071163294.1|1725693_1727079_-	deoxyguanosinetriphosphate triphosphohydrolase family protein	NA	NA	NA	NA	NA
WP_005694470.1|1727171_1727867_-|lysis	CidB/LrgB family autolysis modulator	lysis	NA	NA	NA	NA
WP_005694471.1|1727885_1728308_-	CidA/LrgA family protein	NA	NA	NA	NA	NA
WP_005694472.1|1728422_1728905_+	thermonuclease family protein	NA	A0A0R6PHV6	Moraxella_phage	47.7	1.2e-30
WP_032828460.1|1728906_1730106_+	cysteine desulfurase	NA	Q2XUY6	environmental_halophage	33.1	2.6e-61
WP_005694476.1|1730102_1730483_+	SufE family protein	NA	NA	NA	NA	NA
WP_071163293.1|1730473_1731259_+	Zn-ribbon-containing protein	NA	NA	NA	NA	NA
WP_071163292.1|1731385_1732225_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A2I7SAX1	Vibrio_phage	39.3	2.1e-41
WP_162790438.1|1732257_1733382_-	bifunctional chorismate mutase/prephenate dehydrogenase	NA	NA	NA	NA	NA
WP_071163290.1|1733470_1734391_-|tRNA	tRNA pseudouridine(55) synthase TruB	tRNA	NA	NA	NA	NA
WP_005628626.1|1734390_1734777_-	30S ribosome-binding factor RbfA	NA	NA	NA	NA	NA
WP_112071295.1|1734941_1736618_+	type I restriction-modification system subunit M	NA	A0A2H4PQP4	Staphylococcus_phage	30.9	1.3e-50
>prophage 135
NZ_CP031254	Haemophilus influenzae strain M25588 chromosome, complete genome	1848871	1739727	1745463	1848871		Liberibacter_phage(50.0%)	2	NA	NA
WP_103708120.1|1739727_1742895_+	type I restriction endonuclease subunit R	NA	A0A220A398	Liberibacter_phage	27.5	3.6e-78
WP_050838236.1|1742973_1745463_-	translation initiation factor IF-2	NA	A0A2H4UTS4	Bodo_saltans_virus	26.0	3.5e-28
>prophage 136
NZ_CP031254	Haemophilus influenzae strain M25588 chromosome, complete genome	1848871	1752168	1755943	1848871	tRNA	Bandra_megavirus(50.0%)	3	NA	NA
WP_071163283.1|1752168_1754217_+|tRNA	methionine--tRNA ligase	tRNA	A0A2K9V939	Bandra_megavirus	29.0	1.3e-60
WP_071163282.1|1754329_1755190_+	SAM-dependent methyltransferase TehB	NA	NA	NA	NA	NA
WP_071163281.1|1755241_1755943_-	hydroxyacylglutathione hydrolase	NA	A0A1X9I5D3	Streptococcus_phage	28.5	7.4e-08
>prophage 137
NZ_CP031254	Haemophilus influenzae strain M25588 chromosome, complete genome	1848871	1759991	1762634	1848871		Bacillus_virus(100.0%)	1	NA	NA
WP_071163277.1|1759991_1762634_+	DNA topoisomerase (ATP-hydrolyzing) subunit A	NA	G3M9Z5	Bacillus_virus	32.3	2.1e-103
>prophage 138
NZ_CP031254	Haemophilus influenzae strain M25588 chromosome, complete genome	1848871	1767280	1768672	1848871	protease	uncultured_Mediterranean_phage(100.0%)	1	NA	NA
WP_015702148.1|1767280_1768672_+|protease	DegQ family serine endoprotease	protease	A0A1B1IT49	uncultured_Mediterranean_phage	31.2	7.2e-23
>prophage 139
NZ_CP031254	Haemophilus influenzae strain M25588 chromosome, complete genome	1848871	1774816	1776487	1848871		Klosneuvirus(100.0%)	1	NA	NA
WP_005650218.1|1774816_1776487_-	energy-dependent translational throttle protein EttA	NA	A0A1V0SKJ1	Klosneuvirus	26.7	2.1e-40
>prophage 140
NZ_CP031254	Haemophilus influenzae strain M25588 chromosome, complete genome	1848871	1779662	1781702	1848871		Acidianus_filamentous_virus(100.0%)	1	NA	NA
WP_071163269.1|1779662_1781702_+	excinuclease ABC subunit B	NA	B2CRJ8	Acidianus_filamentous_virus	33.1	3.4e-05
>prophage 141
NZ_CP031254	Haemophilus influenzae strain M25588 chromosome, complete genome	1848871	1787044	1788370	1848871	transposase	Bacillus_phage(100.0%)	1	NA	NA
WP_114877488.1|1787044_1788370_+|transposase	IS3-like element ISHin1 family transposase	transposase	A0A1B1P773	Bacillus_phage	49.0	3.1e-63
>prophage 142
NZ_CP031254	Haemophilus influenzae strain M25588 chromosome, complete genome	1848871	1791980	1796440	1848871		Streptococcus_phage(33.33%)	3	NA	NA
WP_071163263.1|1791980_1793234_+	glutamate-5-semialdehyde dehydrogenase	NA	A0A1X9I5D4	Streptococcus_phage	46.1	3.9e-92
WP_162790439.1|1793312_1794446_-	molecular chaperone DnaJ	NA	A0A0P0YNN4	Yellowstone_lake_phycodnavirus	35.3	2.2e-25
WP_005694297.1|1794532_1796440_-	molecular chaperone DnaK	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	49.4	3.9e-144
>prophage 143
NZ_CP031254	Haemophilus influenzae strain M25588 chromosome, complete genome	1848871	1803557	1809860	1848871		Erysipelothrix_phage(25.0%)	5	NA	NA
WP_005663527.1|1803557_1804982_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	27.5	2.9e-43
WP_005650156.1|1805141_1805684_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	45.9	3.5e-26
WP_103708071.1|1805695_1807762_+	DNA polymerase III subunit gamma/tau	NA	A0A1L2BWV7	Bacteriophage	37.2	2.0e-45
WP_005652947.1|1807885_1808512_+	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_071163258.1|1808615_1809860_+	uracil permease	NA	Q9KX94	Enterobacteria_phage	34.7	1.7e-52
>prophage 144
NZ_CP031254	Haemophilus influenzae strain M25588 chromosome, complete genome	1848871	1813250	1813535	1848871		Bacillus_phage(100.0%)	1	NA	NA
WP_005650127.1|1813250_1813535_-	integration host factor subunit beta	NA	A7KV42	Bacillus_phage	38.9	1.6e-09
>prophage 145
NZ_CP031254	Haemophilus influenzae strain M25588 chromosome, complete genome	1848871	1822405	1832148	1848871	tRNA	Bacillus_phage(33.33%)	8	NA	NA
WP_071163252.1|1822405_1824133_-	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	31.2	1.8e-71
WP_071163251.1|1824423_1825113_-	bifunctional protein-disulfide isomerase/oxidoreductase DsbC	NA	NA	NA	NA	NA
WP_014550889.1|1825245_1826343_+	peptide chain release factor 2	NA	NA	NA	NA	NA
WP_114877496.1|1826495_1828004_+|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SFI4	Hokovirus	41.2	1.2e-87
WP_005691178.1|1828088_1829024_-	malate dehydrogenase	NA	NA	NA	NA	NA
WP_071163249.1|1829230_1829686_+	transcriptional regulator ArgR	NA	NA	NA	NA	NA
WP_071163248.1|1829685_1830576_+	TIGR01777 family protein	NA	NA	NA	NA	NA
WP_071163247.1|1830630_1832148_-	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	40.6	1.9e-85
>prophage 146
NZ_CP031254	Haemophilus influenzae strain M25588 chromosome, complete genome	1848871	1847280	1848382	1848871		uncultured_Caudovirales_phage(50.0%)	2	NA	NA
WP_071163239.1|1847280_1847964_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	50.7	3.0e-54
WP_005647466.1|1847956_1848382_+	6-carboxytetrahydropterin synthase QueD	NA	A0A1U9WRB3	Streptococcus_virus	42.7	7.8e-21
