The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP031242	Haemophilus influenzae strain M21460 chromosome, complete genome	1860196	131831	221697	1860196	lysis,plate,portal,tail,tRNA,capsid,terminase,head,protease	Mannheimia_phage(40.62%)	82	NA	NA
WP_011961904.1|131831_133802_+|tRNA	tRNA(Met) cytidine acetyltransferase	tRNA	NA	NA	NA	NA
WP_011272700.1|133798_133972_+	DUF5363 domain-containing protein	NA	NA	NA	NA	NA
WP_011961905.1|134073_137514_+	transcription-repair coupling factor	NA	NA	NA	NA	NA
WP_011272698.1|137566_138958_-|protease	DegQ family serine endoprotease	protease	A0A1B1IT49	uncultured_Mediterranean_phage	31.2	7.2e-23
WP_005694317.1|139151_140042_+	acetyl-CoA carboxylase, carboxyltransferase subunit beta	NA	NA	NA	NA	NA
WP_038441072.1|140043_141348_+	bifunctional tetrahydrofolate synthase/dihydrofolate synthase	NA	NA	NA	NA	NA
WP_005689857.1|141635_142316_-	vancomycin high temperature exclusion protein	NA	NA	NA	NA	NA
WP_005689855.1|142473_143550_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_005689853.1|143604_146247_-	DNA topoisomerase (ATP-hydrolyzing) subunit A	NA	G3M9Z5	Bacillus_virus	32.3	2.1e-103
WP_005687300.1|146413_148177_-	30S ribosomal protein S12 methylthiotransferase accessory protein YcaO	NA	NA	NA	NA	NA
WP_005687298.1|148313_148790_-	hypothetical protein	NA	NA	NA	NA	NA
WP_042594248.1|149025_149832_+	methyltransferase domain-containing protein	NA	NA	NA	NA	NA
WP_005659609.1|149883_150585_+	hydroxyacylglutathione hydrolase	NA	A0A1X9I5D3	Streptococcus_phage	29.1	3.3e-08
WP_005659606.1|150628_151489_-	SAM-dependent methyltransferase TehB	NA	NA	NA	NA	NA
WP_042593951.1|151601_153650_-|tRNA	methionine--tRNA ligase	tRNA	A0A2K9V939	Bandra_megavirus	29.3	2.2e-60
WP_042593952.1|153800_154913_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_042593953.1|154959_155622_-	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_042593954.1|155735_156410_+	acylneuraminate cytidylyltransferase	NA	NA	NA	NA	NA
WP_154231901.1|156481_156637_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011272688.1|157118_158129_-|portal	phage portal protein	portal	Q19UT6	Mannheimia_phage	60.4	1.8e-116
WP_038441084.1|158138_159920_-|terminase	terminase	terminase	A0A0M3LRV4	Mannheimia_phage	65.4	5.0e-218
WP_042594246.1|160084_160900_+|capsid	GPO family capsid scaffolding protein	capsid	A0A0M3LNM2	Mannheimia_phage	60.5	6.9e-66
WP_005668475.1|160920_161970_+|capsid	phage major capsid protein, P2 family	capsid	Q19UT3	Mannheimia_phage	51.6	4.4e-89
WP_011272685.1|161981_162632_+|terminase	terminase	terminase	Q19US0	Mannheimia_phage	46.0	4.1e-45
WP_042594245.1|162925_163432_+|head	head completion/stabilization protein	head	A0A0M3LNL8	Mannheimia_phage	51.0	2.8e-33
WP_005668467.1|163431_163641_+|tail	tail protein	tail	NA	NA	NA	NA
WP_005668464.1|163642_163864_+	hypothetical protein	NA	NA	NA	NA	NA
WP_042594244.1|163856_164375_+	lysozyme	NA	A0A0M3LPQ1	Mannheimia_phage	46.0	1.1e-35
WP_011272684.1|164359_164710_+	chemotaxis protein	NA	NA	NA	NA	NA
WP_005672208.1|164884_165100_+	TraR/DksA family transcriptional regulator	NA	A0A0M3LS11	Mannheimia_phage	47.9	1.1e-10
WP_038441089.1|165324_165795_+|tail	phage tail protein	tail	E5G6N3	Salmonella_phage	45.3	7.3e-28
WP_011272680.1|165794_166256_+	phage virion morphogenesis protein	NA	A0A2H4J927	uncultured_Caudovirales_phage	48.2	5.7e-25
WP_005653079.1|166256_166604_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011272679.1|166707_166890_+	hypothetical protein	NA	Q19UR2	Mannheimia_phage	47.8	8.8e-06
WP_011272678.1|166900_167239_-	hypothetical protein	NA	NA	NA	NA	NA
WP_075913143.1|167314_167488_+	hypothetical protein	NA	Q19UR2	Mannheimia_phage	53.3	3.2e-05
WP_042593957.1|167465_167726_-	hypothetical protein	NA	NA	NA	NA	NA
WP_006995348.1|170790_171243_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011272674.1|171340_171898_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005653088.1|171906_172335_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011272673.1|172438_173038_+|plate	phage baseplate assembly protein V	plate	A0A0M3LPY9	Mannheimia_phage	66.0	4.2e-44
WP_005633786.1|173039_173378_+	hypothetical protein	NA	Q19UQ6	Mannheimia_phage	56.6	3.4e-19
WP_011272672.1|173374_174289_+|plate	baseplate assembly protein	plate	Q19UQ5	Mannheimia_phage	59.5	5.1e-94
WP_011272671.1|174278_174815_+|tail	phage tail protein I	tail	M1T2R2	Escherichia_phage	52.5	1.6e-50
WP_042594609.1|174823_177346_+|tail	tail fiber protein	tail	Q94MY0	Haemophilus_virus	69.3	1.1e-255
WP_042594610.1|177357_177957_+	hypothetical protein	NA	Q94MX9	Haemophilus_virus	88.0	1.3e-90
WP_011272668.1|177953_178457_+	hypothetical protein	NA	F6MIM0	Haemophilus_phage	63.6	1.7e-51
WP_011272667.1|178513_179335_+	hypothetical protein	NA	NA	NA	NA	NA
WP_042594611.1|179348_179717_+	hypothetical protein	NA	NA	NA	NA	NA
WP_038441454.1|179733_180873_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011272665.1|180882_181410_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011272664.1|181413_182178_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005650281.1|183838_184294_+	ribosome maturation factor RimP	NA	NA	NA	NA	NA
WP_005691699.1|184310_185798_+	transcription termination/antitermination protein NusA	NA	NA	NA	NA	NA
WP_042594613.1|185809_188299_+	translation initiation factor IF-2	NA	A0A2H4UTS4	Bodo_saltans_virus	26.0	3.5e-28
WP_042594615.1|188377_191560_-	type I restriction endonuclease subunit R	NA	A0A220A398	Liberibacter_phage	31.0	3.3e-79
WP_042594618.1|192008_192218_-	hypothetical protein	NA	NA	NA	NA	NA
WP_042611785.1|192465_193317_-	FRG domain-containing protein	NA	NA	NA	NA	NA
WP_042594621.1|193318_194704_-	restriction endonuclease HindVIIP subunit S	NA	NA	NA	NA	NA
WP_162816776.1|196309_196462_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005628626.1|196532_196919_+	30S ribosome-binding factor RbfA	NA	NA	NA	NA	NA
WP_042593908.1|198059_199184_+	bifunctional chorismate mutase/prephenate dehydrogenase	NA	NA	NA	NA	NA
WP_042593909.1|199216_200056_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A2I7SAX1	Vibrio_phage	39.3	1.0e-40
WP_011272655.1|200099_200897_-	Zn-ribbon-containing protein	NA	NA	NA	NA	NA
WP_005631781.1|200887_201268_-	SufE family protein	NA	NA	NA	NA	NA
WP_011272654.1|201264_202464_-	cysteine desulfurase	NA	Q2XUY6	environmental_halophage	32.0	2.0e-61
WP_032827530.1|202465_202948_-	thermonuclease family protein	NA	A0A0R6PHV6	Moraxella_phage	48.4	3.8e-32
WP_005650310.1|203062_203485_+	CidA/LrgA family protein	NA	NA	NA	NA	NA
WP_005659557.1|203503_204199_+|lysis	CidB/LrgB family autolysis modulator	lysis	NA	NA	NA	NA
WP_005659555.1|204291_205677_+	deoxyguanosinetriphosphate triphosphohydrolase family protein	NA	NA	NA	NA	NA
WP_011272652.1|205770_207714_+	ABC transporter ATP-binding protein	NA	A0A2K9L0W2	Tupanvirus	29.8	1.6e-52
WP_005688477.1|207794_208877_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_005650699.1|209006_209777_-	spermidine/putrescine ABC transporter permease PotC	NA	NA	NA	NA	NA
WP_042594625.1|209776_210637_-	spermidine/putrescine ABC transporter permease PotB	NA	Q6GZ02	Mycoplasma_phage	29.0	5.8e-15
WP_011962024.1|210620_211739_-	spermidine/putrescine ABC transporter ATP-binding protein PotA	NA	Q6GZ03	Mycoplasma_phage	37.1	1.9e-29
WP_042594628.1|212034_213273_+	peptidase T	NA	NA	NA	NA	NA
WP_005650692.1|213741_214224_-	DNA starvation/stationary phase protection protein	NA	NA	NA	NA	NA
WP_042594630.1|214497_215376_+	cytidine deaminase	NA	NA	NA	NA	NA
WP_042594633.1|215419_216385_-|tRNA	tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB	tRNA	NA	NA	NA	NA
WP_042594635.1|216381_217896_-	sodium/proline symporter PutP	NA	NA	NA	NA	NA
WP_042594637.1|218011_219487_+	ribonuclease G	NA	NA	NA	NA	NA
WP_042594056.1|220026_221697_+|tRNA	glutamine--tRNA ligase	tRNA	A0A222YZ70	Escherichia_phage	76.3	2.0e-253
>prophage 2
NZ_CP031242	Haemophilus influenzae strain M21460 chromosome, complete genome	1860196	266810	278805	1860196	tRNA	Acinetobacter_phage(42.86%)	11	NA	NA
WP_005653946.1|266810_267830_-	phosphate ABC transporter substrate-binding protein PstS	NA	A0A222YW41	Synechococcus_phage	40.5	1.2e-51
WP_005650594.1|268332_268821_+	non-heme ferritin	NA	NA	NA	NA	NA
WP_005656740.1|268836_269334_+	non-heme ferritin	NA	NA	NA	NA	NA
WP_005688459.1|269590_270355_+	glycosyltransferase	NA	A7IW34	Paramecium_bursaria_Chlorella_virus	29.1	1.5e-14
WP_005687196.1|270456_272013_+	anthranilate synthase component I	NA	A0A0B5J984	Pandoravirus	33.2	2.4e-22
WP_005687195.1|272025_272613_+	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	40.0	2.2e-34
WP_005662273.1|272661_273048_+	tautomerase family protein	NA	NA	NA	NA	NA
WP_005687194.1|273100_274102_+	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	39.6	4.4e-46
WP_005688455.1|274142_275573_+	bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF	NA	A0A0P0IR83	Acinetobacter_phage	38.0	1.2e-33
WP_005659477.1|275634_275907_+	hydrogenase maturation factor HybG	NA	NA	NA	NA	NA
WP_042594656.1|275940_278805_-|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.3	3.9e-148
>prophage 3
NZ_CP031242	Haemophilus influenzae strain M21460 chromosome, complete genome	1860196	286869	325059	1860196	integrase,tRNA,capsid,terminase,holin,protease	Haemophilus_phage(33.33%)	49	292842:292857	314069:314084
WP_005650554.1|286869_287046_-	DUF2213 domain-containing protein	NA	Q7Y5U2	Haemophilus_phage	93.1	8.5e-22
WP_075913359.1|287186_288497_-|capsid	minor capsid protein	capsid	Q7Y5U5	Haemophilus_phage	78.3	5.3e-108
WP_011272621.1|288396_289731_-	DUF1073 domain-containing protein	NA	Q7Y5U6	Haemophilus_phage	84.2	2.1e-213
WP_011272620.1|289732_291076_-|terminase	PBSX family phage terminase large subunit	terminase	A0A220NQL3	Acinetobacter_phage	54.4	2.8e-125
WP_011272619.1|291062_291575_-|terminase	terminase small subunit	terminase	A0A1X9SFE5	Acinetobacter_phage	39.2	1.0e-19
WP_011272618.1|291619_291898_+	helix-turn-helix transcriptional regulator	NA	A0A1S5NNJ5	Burkholderia_phage	66.2	6.5e-16
WP_005693951.1|291899_292181_-	hypothetical protein	NA	Q776X1	Haemophilus_phage	73.3	9.4e-31
WP_011272617.1|292092_292416_-	DUF2570 family protein	NA	Q7Y5U9	Haemophilus_phage	54.6	7.8e-21
WP_042594666.1|292408_293011_-	glycoside hydrolase family 19 protein	NA	Q7Y5V0	Haemophilus_phage	54.4	9.6e-57
292842:292857	attL	AATCTTGTAAATCCGC	NA	NA	NA	NA
WP_005650535.1|292979_293336_-|holin	phage holin, lambda family	holin	NA	NA	NA	NA
WP_038441183.1|293672_294341_-	hypothetical protein	NA	D0UIM5	Aggregatibacter_phage	62.3	6.7e-67
WP_005666914.1|294698_295664_+	hypothetical protein	NA	Q8HA04	Enterobacteria_phage	58.8	1.2e-88
WP_005650528.1|295713_296085_-	hypothetical protein	NA	NA	NA	NA	NA
WP_038441185.1|296115_296781_-	HNH endonuclease	NA	A0A2I7QND8	Vibrio_phage	42.8	2.2e-38
WP_005650522.1|297417_297837_-	recombination protein NinB	NA	Q7Y5V7	Haemophilus_phage	75.4	1.9e-56
WP_005650520.1|297873_298098_-	hypothetical protein	NA	A0A0M3LR43	Mannheimia_phage	47.9	1.1e-10
WP_005650518.1|298094_298715_-	replication P	NA	A0A0M3LS65	Mannheimia_phage	39.1	1.9e-28
WP_042594521.1|298711_299434_-	helix-turn-helix domain-containing protein	NA	D0UIL5	Aggregatibacter_phage	68.8	4.1e-62
WP_042594522.1|299430_300099_-	antirepressor	NA	D0UIL6	Aggregatibacter_phage	51.7	2.2e-54
WP_042594523.1|300145_300586_-	hypothetical protein	NA	K7PJS5	Enterobacterial_phage	30.3	1.8e-12
WP_005650512.1|300634_300823_-	DNA-binding protein	NA	Q7Y5W4	Haemophilus_phage	93.5	6.5e-28
WP_005650509.1|300933_301632_+	helix-turn-helix transcriptional regulator	NA	Q7Y5W5	Haemophilus_phage	84.5	1.4e-112
WP_011272604.1|301683_302763_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005666912.1|302765_303101_+	STAS-like domain-containing protein	NA	A0A2H4J4X6	uncultured_Caudovirales_phage	41.5	8.1e-13
WP_005650502.1|303825_303996_-	DUF1508 domain-containing protein	NA	NA	NA	NA	NA
WP_005650500.1|304010_304232_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005650497.1|304695_304899_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005666905.1|305499_306771_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005656636.1|307108_307360_+	phage antirepressor Ant	NA	A0A0M3LQ72	Mannheimia_phage	69.1	2.5e-27
WP_005656629.1|307939_308359_-|integrase	tyrosine-type recombinase/integrase	integrase	A0A0M3LQN1	Mannheimia_phage	72.1	9.4e-19
WP_005656627.1|308931_309705_+	FNR family transcription factor	NA	NA	NA	NA	NA
WP_005656626.1|309826_310756_+	universal stress protein UspE	NA	NA	NA	NA	NA
WP_005662334.1|310953_311790_+	DUF4198 domain-containing protein	NA	NA	NA	NA	NA
WP_005652713.1|311873_312512_-	phosphoribosylglycinamide formyltransferase	NA	E3SNR5	Prochlorococcus_phage	38.9	1.3e-27
WP_005687142.1|312566_313601_-	phosphoribosylformylglycinamidine cyclo-ligase	NA	A0A1D7SCX2	Cyanophage	43.6	8.7e-74
WP_005687141.1|313780_314539_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
314069:314084	attR	GCGGATTTACAAGATT	NA	NA	NA	NA
WP_005687140.1|314555_315749_+	tryptophan synthase subunit beta	NA	NA	NA	NA	NA
WP_005687139.1|315748_316555_+	tryptophan synthase subunit alpha	NA	NA	NA	NA	NA
WP_005660359.1|316698_317652_-	oxidoreductase	NA	NA	NA	NA	NA
WP_005631703.1|317710_318187_+|tRNA	Cys-tRNA(Pro) deacylase	tRNA	NA	NA	NA	NA
WP_005652728.1|318325_318544_-	cold shock domain-containing protein CspD	NA	Q9AZD3	Lactococcus_phage	51.6	1.4e-10
WP_005656618.1|318692_318851_-	YoaH family protein	NA	NA	NA	NA	NA
WP_005656617.1|318843_319563_-|tRNA	tRNA pseudouridine(65) synthase TruC	tRNA	NA	NA	NA	NA
WP_005656616.1|319556_319877_-	YqcC family protein	NA	NA	NA	NA	NA
WP_005656615.1|319891_321349_-|tRNA	tRNA 4-thiouridine(8) synthase ThiI	tRNA	NA	NA	NA	NA
WP_005656614.1|321507_321762_+	exodeoxyribonuclease VII small subunit	NA	NA	NA	NA	NA
WP_005656611.1|321761_322652_+	(2E,6E)-farnesyl diphosphate synthase	NA	NA	NA	NA	NA
WP_005656609.1|322693_324571_+	1-deoxy-D-xylulose-5-phosphate synthase	NA	NA	NA	NA	NA
WP_005650453.1|324606_325059_-|protease	ClpXP protease specificity-enhancing factor	protease	A0A1S5R3H3	Pseudomonas_phage	56.1	2.5e-25
>prophage 4
NZ_CP031242	Haemophilus influenzae strain M21460 chromosome, complete genome	1860196	542359	550868	1860196		uncultured_Caudovirales_phage(16.67%)	8	NA	NA
WP_011272434.1|542359_543043_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	50.7	2.3e-54
WP_011272433.1|543035_543461_+	6-carboxytetrahydropterin synthase QueD	NA	A0A1U9WRB3	Streptococcus_virus	42.0	2.3e-20
WP_005686506.1|543461_544097_+	7-carboxy-7-deazaguanine synthase QueE	NA	S4TZT1	uncultured_phage	30.3	8.7e-16
WP_042594456.1|544706_546887_+	DNA helicase II	NA	A7KV33	Bacillus_phage	37.6	5.1e-116
WP_005647473.1|546976_547978_+	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_005653671.1|547992_548880_+	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_005694258.1|548889_549882_+	dipeptide ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	30.8	2.0e-14
WP_042594455.1|549884_550868_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.2	1.4e-20
>prophage 5
NZ_CP031242	Haemophilus influenzae strain M21460 chromosome, complete genome	1860196	677810	686879	1860196		Escherichia_phage(83.33%)	9	NA	NA
WP_042594423.1|677810_679655_+	ABC transporter ATP-binding protein	NA	F2Y2R6	Organic_Lake_phycodnavirus	29.3	2.1e-22
WP_014550949.1|679779_680058_-	heavy-metal-associated domain-containing protein	NA	NA	NA	NA	NA
WP_005656013.1|680066_680429_-	membrane protein	NA	NA	NA	NA	NA
WP_014550950.1|680403_681513_-	transglutaminase family protein	NA	NA	NA	NA	NA
WP_042594422.1|681766_684187_+	molybdopterin-dependent oxidoreductase	NA	A0A077SK27	Escherichia_phage	50.4	1.1e-223
WP_042594421.1|684197_684815_+	dimethylsulfoxide reductase subunit B	NA	A0A077SL61	Escherichia_phage	57.3	4.4e-73
WP_012054524.1|684816_685656_+	dimethyl sulfoxide reductase anchor subunit	NA	A0A077SK59	Escherichia_phage	31.6	5.5e-18
WP_005686307.1|685767_686379_+	Tat proofreading chaperone DmsD	NA	A0A077SLS7	Escherichia_phage	32.5	2.3e-21
WP_005656004.1|686378_686879_+	ferredoxin-type protein NapF	NA	A0A077SLP0	Escherichia_phage	32.0	3.2e-13
