assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_003344445.1_ASM334444v1	NZ_CP022744	Streptomyces lincolnensis strain LC-G chromosome, complete genome	1	4191463-4191524	1	CRISPRCasFinder	no		c2c9_V-U4,cas5,cas2,csa3,Cas14u_CAS-V,DEDDh,cas3,DinG,WYL,Cas9_archaeal,cas4	Orphan	CCGCCGGGAGGGCCGTAGCCGCC	23	0	0	NA	NA	NA	1	1	Orphan	c2c9_V-U4,cas5,cas2,csa3,Cas14u_CAS-V,DEDDh,cas3,DinG,WYL,Cas9_archaeal,cas4	NA|205aa|up_6|NZ_CP022744.1_4177479_4178094_+,NA	NA|327aa|up_9|NZ_CP022744.1_4171381_4172362_+	COG0053, MMT1, Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]	NA|679aa|up_8|NZ_CP022744.1_4173225_4175262_-	COG1299, FruA, Phosphotransferase system, fructose-specific IIC component [Carbohydrate transport and metabolism]	NA|486aa|up_7|NZ_CP022744.1_4175809_4177267_+	pfam05221, AdoHcyase, S-adenosyl-L-homocysteine hydrolase	NA|205aa|up_6|NZ_CP022744.1_4177479_4178094_+	NA	NA|344aa|up_5|NZ_CP022744.1_4178135_4179167_-	COG1714, COG1714, Predicted membrane protein/domain [Function unknown]	NA|336aa|up_4|NZ_CP022744.1_4179297_4180305_+	pfam01944, SpoIIM, Stage II sporulation protein M	NA|437aa|up_3|NZ_CP022744.1_4186114_4187425_-	COG1721, COG1721, Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain) [General function prediction only]	NA|330aa|up_2|NZ_CP022744.1_4187424_4188414_-	COG0714, COG0714, MoxR-like ATPases [General function prediction only]	NA|401aa|up_1|NZ_CP022744.1_4188413_4189616_-	pfam14258, DUF4350, Domain of unknown function (DUF4350)	NA|273aa|up_0|NZ_CP022744.1_4189612_4190431_-	pfam13559, DUF4129, Domain of unknown function (DUF4129)	NA|383aa|down_0|NZ_CP022744.1_4191973_4193122_+	TIGR00512, methylthioribose-1-phosphate_isomerase_predicted, S-methyl-5-thioribose-1-phosphate isomerase	NA|230aa|down_1|NZ_CP022744.1_4193126_4193816_+	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|715aa|down_2|NZ_CP022744.1_4193817_4195962_+	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|610aa|down_3|NZ_CP022744.1_4195951_4197781_+	PRK13613, PRK13613, lipoprotein LpqB; Provisional	NA|404aa|down_4|NZ_CP022744.1_4198001_4199213_+	COG1040, ComFC, Predicted amidophosphoribosyltransferases [General function prediction only]	NA|231aa|down_5|NZ_CP022744.1_4199524_4200217_+	cd00552, RaiA, RaiA ("ribosome-associated inhibitor A", also known as Protein Y (PY), YfiA, and SpotY,  is a stress-response protein that binds the ribosomal subunit interface and arrests translation by interfering with aminoacyl-tRNA binding to the ribosomal A site	NA|249aa|down_6|NZ_CP022744.1_4200421_4201168_+	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|391aa|down_7|NZ_CP022744.1_4201208_4202381_-	COG3214, COG3214, Uncharacterized protein conserved in bacteria [Function unknown]	NA|194aa|down_8|NZ_CP022744.1_4202490_4203072_-	pfam13302, Acetyltransf_3, Acetyltransferase (GNAT) domain	NA|946aa|down_9|NZ_CP022744.1_4203342_4206180_+	PRK12904, PRK12904, preprotein translocase subunit SecA; Reviewed
GCF_003344445.1_ASM334444v1	NZ_CP022744	Streptomyces lincolnensis strain LC-G chromosome, complete genome	2	5706320-5706407	2	CRISPRCasFinder	no		c2c9_V-U4,cas5,cas2,csa3,Cas14u_CAS-V,DEDDh,cas3,DinG,WYL,Cas9_archaeal,cas4	Orphan	CGAGCCCGTCGGGCAGGGCGAACTC	25	0	0	NA	NA	NA	1	1	Orphan	c2c9_V-U4,cas5,cas2,csa3,Cas14u_CAS-V,DEDDh,cas3,DinG,WYL,Cas9_archaeal,cas4	NA,NA	NA|169aa|up_9|NZ_CP022744.1_5694754_5695261_-	cd16936, HATPase_RsbW-like, Histidine kinase-like ATPase domain of RsbW, an anti sigma-B factor and serine-protein kinase involved in regulating sigma-B during stress in Bacilli, and related domains	NA|275aa|up_8|NZ_CP022744.1_5695605_5696430_+	pfam13560, HTH_31, Helix-turn-helix domain	NA|487aa|up_7|NZ_CP022744.1_5696542_5698003_+	cd07151, ALDH_HBenzADH, NADP+-dependent p-hydroxybenzaldehyde dehydrogenase-like	NA|182aa|up_6|NZ_CP022744.1_5698105_5698651_+	pfam04978, DUF664, Protein of unknown function (DUF664)	NA|213aa|up_5|NZ_CP022744.1_5698669_5699308_+	COG1695, COG1695, Predicted transcriptional regulators [Transcription]	NA|317aa|up_4|NZ_CP022744.1_5699429_5700380_+	TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit	NA|254aa|up_3|NZ_CP022744.1_5700376_5701138_+	pfam01061, ABC2_membrane, ABC-2 type transporter	NA|471aa|up_2|NZ_CP022744.1_5701192_5702605_-	TIGR01788, Glutamate_decarboxylase_alpha_GAD-alpha	NA|254aa|up_1|NZ_CP022744.1_5702727_5703489_+	cd01106, HTH_TipAL-Mta, Helix-Turn-Helix DNA binding domain of the transcription regulators TipAL, Mta, and SkgA	NA|286aa|up_0|NZ_CP022744.1_5703933_5704791_+	PRK10847, PRK10847, DedA family protein	NA|164aa|down_0|NZ_CP022744.1_5706591_5707083_-	pfam00719, Pyrophosphatase, Inorganic pyrophosphatase	NA|554aa|down_1|NZ_CP022744.1_5707162_5708824_+	TIGR00666, D-alanyl-D-alanine_carboxypeptidase_DacB, D-alanyl-D-alanine carboxypeptidase, serine-type, PBP4 family	NA|375aa|down_2|NZ_CP022744.1_5708932_5710057_+	TIGR03883, DUF2342_F420, uncharacterized protein, coenzyme F420 biosynthesis associated	NA|357aa|down_3|NZ_CP022744.1_5710269_5711340_+	TIGR02432, tRNAIle-lysidine_synthase, tRNA(Ile)-lysidine synthetase, N-terminal domain	NA|187aa|down_4|NZ_CP022744.1_5711412_5711973_+	COG0634, Hpt, Hypoxanthine-guanine phosphoribosyltransferase [Nucleotide transport and metabolism]	NA|680aa|down_5|NZ_CP022744.1_5712180_5714220_+	TIGR01241, ATP-dependent_zinc_metalloprotease_FtsH, ATP-dependent metalloprotease FtsH	NA|202aa|down_6|NZ_CP022744.1_5714339_5714945_+	PRK09347, folE, GTP cyclohydrolase I; Provisional	NA|162aa|down_7|NZ_CP022744.1_5714957_5715443_-	pfam11377, DUF3180, Protein of unknown function (DUF3180)	NA|203aa|down_8|NZ_CP022744.1_5715513_5716122_-	COG0801, FolK, 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase [Coenzyme metabolism]	NA|120aa|down_9|NZ_CP022744.1_5716118_5716478_-	pfam02152, FolB, Dihydroneopterin aldolase
GCF_003344445.1_ASM334444v1	NZ_CP022744	Streptomyces lincolnensis strain LC-G chromosome, complete genome	3	7625791-7625906	3	CRISPRCasFinder	no	DEDDh	c2c9_V-U4,cas5,cas2,csa3,Cas14u_CAS-V,DEDDh,cas3,DinG,WYL,Cas9_archaeal,cas4	Unclear	TCATCGACCGGCCTCCTGCGTGGTGTTGAG	30	0	0	NA	NA	NA	1	1	Orphan	c2c9_V-U4,cas5,cas2,csa3,Cas14u_CAS-V,DEDDh,cas3,DinG,WYL,Cas9_archaeal,cas4	NA|75aa|up_3|NZ_CP022744.1_7621608_7621833_-,NA|118aa|down_2|NZ_CP022744.1_7629292_7629646_+,NA|69aa|down_5|NZ_CP022744.1_7632104_7632311_+	NA|460aa|up_9|NZ_CP022744.1_7613589_7614969_-	pfam02515, CoA_transf_3, CoA-transferase family III	NA|523aa|up_8|NZ_CP022744.1_7615042_7616611_-	cd07473, Peptidases_S8_Subtilisin_like, Peptidase S8 family domain in Subtilisin-like proteins	NA|510aa|up_7|NZ_CP022744.1_7616708_7618238_-	cd07484, Peptidases_S8_Thermitase_like, Peptidase S8 family domain in Thermitase-like proteins	NA|119aa|up_6|NZ_CP022744.1_7618515_7618872_+	pfam04341, DUF485, Protein of unknown function, DUF485	NA|543aa|up_5|NZ_CP022744.1_7618868_7620497_+	cd11480, SLC5sbd_u4, Uncharacterized bacterial solute carrier 5 subfamily; putative solute-binding domain	NA|351aa|up_4|NZ_CP022744.1_7620573_7621626_+	PRK00164, moaA, GTP 3',8-cyclase MoaA	NA|75aa|up_3|NZ_CP022744.1_7621608_7621833_-	NA	NA|140aa|up_2|NZ_CP022744.1_7622059_7622479_-	pfam11298, DUF3099, Protein of unknown function (DUF3099)	NA|93aa|up_1|NZ_CP022744.1_7622725_7623004_+	PRK10457, PRK10457, hypothetical protein; Provisional	NA|423aa|up_0|NZ_CP022744.1_7623066_7624335_-	PRK05912, PRK05912, tyrosyl-tRNA synthetase; Validated	NA|235aa|down_0|NZ_CP022744.1_7627649_7628354_+	TIGR01830, 3-oxoacyl-_reductase_FabG, 3-oxoacyl-(acyl-carrier-protein) reductase	NA|256aa|down_1|NZ_CP022744.1_7628359_7629127_+	PRK07889, PRK07889, enoyl-[acyl-carrier-protein] reductase FabI	NA|118aa|down_2|NZ_CP022744.1_7629292_7629646_+	NA	NA|232aa|down_3|NZ_CP022744.1_7629620_7630316_-	COG2186, FadR, Transcriptional regulators [Transcription]	NA|459aa|down_4|NZ_CP022744.1_7630386_7631763_+	TIGR00896, Inner_membrane_transport_protein_YeaN, cyanate transporter	NA|69aa|down_5|NZ_CP022744.1_7632104_7632311_+	NA	NA|173aa|down_6|NZ_CP022744.1_7632376_7632895_+	COG2062, SixA, Phosphohistidine phosphatase SixA [Signal transduction mechanisms]	NA|409aa|down_7|NZ_CP022744.1_7632969_7634196_-	cd07500, HAD_PSP, phosphoserine phosphatase (PSP), similar to Methanococcus Jannaschii PSP and Saccharomyces cerevisiae SER2p	NA|676aa|down_8|NZ_CP022744.1_7634376_7636404_-	PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated	NA|841aa|down_9|NZ_CP022744.1_7636643_7639166_+	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]
GCF_003344445.1_ASM334444v1	NZ_CP022744	Streptomyces lincolnensis strain LC-G chromosome, complete genome	4	8598026-8598113	4	CRISPRCasFinder	no		c2c9_V-U4,cas5,cas2,csa3,Cas14u_CAS-V,DEDDh,cas3,DinG,WYL,Cas9_archaeal,cas4	Orphan	GCCGTCCCGATCCCCCACCCACCC	24	0	0	NA	NA	NA	1	1	Orphan	c2c9_V-U4,cas5,cas2,csa3,Cas14u_CAS-V,DEDDh,cas3,DinG,WYL,Cas9_archaeal,cas4	NA|110aa|up_8|NZ_CP022744.1_8589092_8589422_+,NA|49aa|up_6|NZ_CP022744.1_8590294_8590441_+,NA	NA|342aa|up_9|NZ_CP022744.1_8588013_8589039_+	COG4447, COG4447, Uncharacterized protein related to plant photosystem II stability/assembly factor [General function prediction only]	NA|110aa|up_8|NZ_CP022744.1_8589092_8589422_+	NA	NA|237aa|up_7|NZ_CP022744.1_8589522_8590233_+	pfam04493, Endonuclease_5, Endonuclease V	NA|49aa|up_6|NZ_CP022744.1_8590294_8590441_+	NA	NA|393aa|up_5|NZ_CP022744.1_8590465_8591644_-	COG3268, COG3268, Uncharacterized conserved protein [Function unknown]	NA|127aa|up_4|NZ_CP022744.1_8591737_8592118_+	pfam04237, YjbR, YjbR	NA|377aa|up_3|NZ_CP022744.1_8592236_8593367_+	COG1804, CaiB, Predicted acyl-CoA transferases/carnitine dehydratase [Energy production and conversion]	NA|381aa|up_2|NZ_CP022744.1_8593363_8594506_+	cd01160, LCAD, Long chain acyl-CoA dehydrogenase	NA|405aa|up_1|NZ_CP022744.1_8594529_8595744_+	PRK08242, PRK08242, acetyl-CoA C-acetyltransferase	NA|725aa|up_0|NZ_CP022744.1_8595785_8597960_+	PRK11154, fadJ, fatty acid oxidation complex subunit alpha FadJ	NA|543aa|down_0|NZ_CP022744.1_8598309_8599938_+	COG0028, IlvB, Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism]	NA|236aa|down_1|NZ_CP022744.1_8600032_8600740_+	cd05233, SDR_c, classical (c) SDRs	NA|242aa|down_2|NZ_CP022744.1_8600716_8601442_-	smart00422, HTH_MERR, helix_turn_helix, mercury resistance	NA|489aa|down_3|NZ_CP022744.1_8601681_8603148_+	PRK15049, PRK15049, L-asparagine permease	NA|301aa|down_4|NZ_CP022744.1_8603396_8604299_+	cd01168, adenosine_kinase, Adenosine kinase (AK) catalyzes the phosphorylation of ribofuranosyl-containing nucleoside analogues at the 5'-hydroxyl using ATP or GTP as the phosphate donor	NA|499aa|down_5|NZ_CP022744.1_8604405_8605902_-	cd09603, M1_APN_like, Peptidase M1 family similar to aminopeptidase N catalytic domain	NA|652aa|down_6|NZ_CP022744.1_8606097_8608053_+	PRK05371, PRK05371, x-prolyl-dipeptidyl aminopeptidase; Provisional	NA|415aa|down_7|NZ_CP022744.1_8608049_8609294_+	cd06242, M14-like, Peptidase M14-like domain; uncharacterized subgroup	NA|567aa|down_8|NZ_CP022744.1_8609382_8611083_+	pfam02028, BCCT, BCCT, betaine/carnitine/choline family transporter	NA|318aa|down_9|NZ_CP022744.1_8611096_8612050_-	pfam01266, DAO, FAD dependent oxidoreductase
GCF_003344445.1_ASM334444v1	NZ_CP022744	Streptomyces lincolnensis strain LC-G chromosome, complete genome	5	9178676-9178780	5	CRISPRCasFinder	no		c2c9_V-U4,cas5,cas2,csa3,Cas14u_CAS-V,DEDDh,cas3,DinG,WYL,Cas9_archaeal,cas4	Orphan	GGAGGACACCTGGAAGCCGTCCGG	24	0	0	NA	NA	NA	1	1	Orphan	c2c9_V-U4,cas5,cas2,csa3,Cas14u_CAS-V,DEDDh,cas3,DinG,WYL,Cas9_archaeal,cas4	NA|344aa|up_5|NZ_CP022744.1_9169029_9170061_-,NA|105aa|down_6|NZ_CP022744.1_9187035_9187350_+,NA|230aa|down_9|NZ_CP022744.1_9189142_9189832_-	NA|506aa|up_9|NZ_CP022744.1_9164600_9166118_-	pfam00067, p450, Cytochrome P450	NA|203aa|up_8|NZ_CP022744.1_9166225_9166834_+	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family	NA|243aa|up_7|NZ_CP022744.1_9166983_9167712_+	pfam10615, DUF2470, Protein of unknown function (DUF2470)	NA|409aa|up_6|NZ_CP022744.1_9167679_9168906_-	pfam10282, Lactonase, Lactonase, 7-bladed beta-propeller	NA|344aa|up_5|NZ_CP022744.1_9169029_9170061_-	NA	NA|416aa|up_4|NZ_CP022744.1_9170121_9171369_-	COG4129, COG4129, Predicted membrane protein [Function unknown]	NA|460aa|up_3|NZ_CP022744.1_9171544_9172924_+	cd14728, Ere-like, Erythromycin esterase and succinoglycan biosynthesis related proteins	NA|975aa|up_2|NZ_CP022744.1_9172966_9175891_-	cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment	NA|339aa|up_1|NZ_CP022744.1_9176047_9177064_+	COG0583, LysR, Transcriptional regulator [Transcription]	NA|495aa|up_0|NZ_CP022744.1_9177064_9178549_-	cd09603, M1_APN_like, Peptidase M1 family similar to aminopeptidase N catalytic domain	NA|169aa|down_0|NZ_CP022744.1_9179061_9179568_-	pfam16571, FBP_C, FBP C-terminal treble-clef zinc-finger	NA|335aa|down_1|NZ_CP022744.1_9179618_9180623_+	pfam12294, DUF3626, Protein of unknown function (DUF3626)	NA|217aa|down_2|NZ_CP022744.1_9180526_9181177_-	pfam08448, PAS_4, PAS fold	NA|1056aa|down_3|NZ_CP022744.1_9181345_9184513_+	cd06206, bifunctional_CYPOR, These bifunctional proteins fuse N-terminal cytochrome p450 with a cytochrome p450 reductase (CYPOR)	NA|333aa|down_4|NZ_CP022744.1_9184587_9185586_+	pfam01636, APH, Phosphotransferase enzyme family	NA|430aa|down_5|NZ_CP022744.1_9185667_9186957_+	COG1940, NagC, Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]	NA|105aa|down_6|NZ_CP022744.1_9187035_9187350_+	NA	NA|343aa|down_7|NZ_CP022744.1_9187374_9188403_-	cd05240, UDP_G4E_3_SDR_e, UDP-glucose 4 epimerase (G4E), subgroup 3, extended (e) SDRs	NA|223aa|down_8|NZ_CP022744.1_9188470_9189139_+	cd14843, D-Ala-D-Ala_dipeptidase_like, D-Ala-D-Ala dipeptidase, includes uncharacterized enzymes	NA|230aa|down_9|NZ_CP022744.1_9189142_9189832_-	NA
