The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP031131	Staphylococcus aureus strain E16SA093 chromosome, complete genome	2785564	719154	726973	2785564		Hokovirus(16.67%)	10	NA	NA
WP_000244415.1|719154_720210_-	HAMP domain-containing histidine kinase	NA	A0A1V0SGX0	Hokovirus	29.8	3.6e-14
WP_000149344.1|720209_720896_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_001037807.1|720870_721344_-	DoxX family protein	NA	NA	NA	NA	NA
WP_001093557.1|721684_722125_-	DM13 domain-containing protein	NA	NA	NA	NA	NA
WP_000637687.1|722404_722989_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001062972.1|723087_723801_-	7-carboxy-7-deazaguanine synthase QueE	NA	A0A1U9WRB6	Streptococcus_virus	43.5	6.5e-52
WP_000941340.1|723804_724224_-	6-carboxytetrahydropterin synthase QueD	NA	S4U060	uncultured_phage	28.7	6.3e-07
WP_000446724.1|724225_724894_-	7-cyano-7-deazaguanine synthase QueC	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	57.5	9.6e-66
WP_000604514.1|725244_725838_+	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	42.9	4.4e-38
WP_001217801.1|725821_726973_+	anthranilate synthase component I family protein	NA	S4VNU7	Pandoravirus	35.7	7.8e-23
>prophage 2
NZ_CP031131	Staphylococcus aureus strain E16SA093 chromosome, complete genome	2785564	738943	752534	2785564		uncultured_Caudovirales_phage(50.0%)	12	NA	NA
WP_000663030.1|738943_740002_+	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	26.7	7.9e-22
WP_000197271.1|740296_740839_+	5'-3'-deoxyribonucleotidase	NA	NA	NA	NA	NA
WP_000429008.1|741462_742380_-	diacylglycerol kinase family lipid kinase	NA	A0A1V0SBJ0	Catovirus	22.4	2.8e-07
WP_031760357.1|742469_742571_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000193751.1|742648_744154_-	peptide MFS transporter	NA	A0A0P0IY73	Acinetobacter_phage	32.2	2.0e-58
WP_000930012.1|744494_744995_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	E7DN65	Pneumococcus_phage	71.5	5.9e-52
WP_001068487.1|745014_745881_-	DMT family transporter	NA	NA	NA	NA	NA
WP_000692521.1|746694_747093_+	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	A0A2H4J545	uncultured_Caudovirales_phage	72.0	1.2e-52
WP_000855505.1|747055_749161_+	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A0A2H4J2N6	uncultured_Caudovirales_phage	91.7	0.0e+00
WP_000562498.1|749278_750250_+	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	A0A2H4J4P3	uncultured_Caudovirales_phage	91.3	4.2e-171
WP_000499195.1|750430_750586_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001245577.1|751577_752534_+	iron chelate uptake ABC transporter family permease subunit	NA	A0A2H4J116	uncultured_Caudovirales_phage	57.8	1.2e-05
>prophage 3
NZ_CP031131	Staphylococcus aureus strain E16SA093 chromosome, complete genome	2785564	837587	883493	2785564	tail,capsid,integrase,terminase,portal,head,holin,plate	Staphylococcus_virus(50.0%)	66	835684:835700	869536:869552
835684:835700	attL	GAAATTAGATAAAAACA	NA	NA	NA	NA
WP_001006453.1|837587_838838_+	cysteine desulfurase	NA	Q2XUY6	environmental_halophage	44.8	1.1e-110
WP_001010512.1|838827_839292_+	SUF system NifU family Fe-S cluster assembly protein	NA	NA	NA	NA	NA
WP_001074405.1|839442_840840_+	Fe-S cluster assembly protein SufB	NA	NA	NA	NA	NA
WP_001145728.1|840907_841957_-|integrase	site-specific integrase	integrase	A1KWY3	Staphylococcus_virus	100.0	1.6e-203
WP_000826266.1|842019_842535_-	hypothetical protein	NA	I1W624	Staphylococcus_phage	100.0	1.5e-37
WP_000896616.1|842538_843039_-	hypothetical protein	NA	B7T094	Staphylococcus_virus	100.0	1.1e-71
WP_000874713.1|843089_843728_-	LexA family transcriptional regulator	NA	E0Y3N7	Staphylococcus_virus	100.0	1.5e-116
WP_114561604.1|843918_844173_+	helix-turn-helix transcriptional regulator	NA	A0A0E3T8G8	Staphylococcus_phage	98.8	3.1e-41
WP_001148578.1|844188_844980_+	phage antirepressor KilAC domain-containing protein	NA	E0Y3N9	Staphylococcus_virus	100.0	6.5e-146
WP_000187184.1|844980_845205_+	hypothetical protein	NA	A0A0F6N4M2	Staphylococcus_phage	100.0	3.2e-34
WP_000993183.1|845244_845694_+	hypothetical protein	NA	A0A0H3U2S4	Staphylococcus_phage	100.0	2.3e-79
WP_000977378.1|845707_845929_+	hypothetical protein	NA	E0Y3P2	Staphylococcus_virus	100.0	1.5e-31
WP_000066013.1|845921_846089_+	DUF1270 domain-containing protein	NA	S4V7J2	Staphylococcus_phage	96.4	4.0e-21
WP_000219666.1|846089_846410_+	hypothetical protein	NA	S4V968	Staphylococcus_phage	100.0	4.8e-55
WP_000291075.1|846503_846764_+	DUF1108 family protein	NA	A0A059T5A3	Staphylococcus_phage	100.0	1.2e-43
WP_114561605.1|846776_847313_+	hypothetical protein	NA	A0A2I6PD93	Staphylococcus_phage	99.4	3.8e-81
WP_000840496.1|847313_847964_+	single-stranded DNA-binding protein	NA	A0A0F6N3I5	Staphylococcus_phage	100.0	1.1e-119
WP_001099010.1|847960_848404_+	single-stranded DNA-binding protein	NA	A0A2I6PD99	Staphylococcus_phage	95.9	3.2e-73
WP_063456299.1|848415_849090_+	hypothetical protein	NA	A1KX69	Staphylococcus_virus	97.8	4.7e-129
WP_016028252.1|849199_849859_-	hypothetical protein	NA	E0Y3Q0	Staphylococcus_virus	100.0	1.4e-120
WP_114561606.1|849904_850675_+	replication protein	NA	A0A2H4PQI2	Staphylococcus_phage	99.6	9.0e-116
WP_000803028.1|850684_851458_+	ATP-binding protein	NA	A0A2H4PQI3	Staphylococcus_phage	100.0	4.6e-144
WP_114561607.1|851451_851610_+	hypothetical protein	NA	A0A2H4PQI7	Staphylococcus_phage	98.1	1.7e-21
WP_001123681.1|851623_851845_+	DUF3269 family protein	NA	A0A2H4PQI9	Staphylococcus_phage	100.0	2.2e-35
WP_000049798.1|851855_852260_+	DUF1064 domain-containing protein	NA	G4KNP2	Staphylococcus_phage	100.0	1.6e-68
WP_016028253.1|852264_852450_+	DUF3113 family protein	NA	A0A2H4PQI8	Staphylococcus_phage	100.0	3.2e-27
WP_001557189.1|852450_852807_+	phage protein	NA	A0A0F6N3E3	Staphylococcus_phage	99.2	7.2e-60
WP_000131381.1|852810_853053_+	hypothetical protein	NA	A0A1P8L6E3	Staphylococcus_phage	100.0	3.0e-41
WP_025174939.1|853067_853319_+	DUF1024 family protein	NA	E0Y3Q8	Staphylococcus_virus	100.0	1.4e-38
WP_000454994.1|853482_853764_+	hypothetical protein	NA	A0A2I6PDX3	Staphylococcus_phage	100.0	8.5e-48
WP_016028255.1|853940_854474_+	hypothetical protein	NA	E0Y3R2	Staphylococcus_virus	100.0	6.0e-95
WP_000195826.1|854510_854717_+	DUF1381 domain-containing protein	NA	Q4ZCV6	Staphylococcus_virus	97.1	2.7e-19
WP_001072793.1|854905_855109_+	hypothetical protein	NA	B2ZYX5	Staphylococcus_phage	97.0	2.0e-30
WP_114561608.1|855101_855251_+	transcriptional regulator	NA	A0A0H4ISR0	Staphylococcus_phage	84.2	7.7e-16
WP_000383791.1|855251_855614_+	hypothetical protein	NA	Q4ZDW4	Staphylococcus_virus	94.1	5.2e-58
WP_000989961.1|855614_855761_+	hypothetical protein	NA	E0Y3R6	Staphylococcus_virus	100.0	1.7e-15
WP_000058634.1|855775_856195_+	transcriptional regulator	NA	B7T0C4	Staphylococcus_virus	100.0	1.1e-70
WP_009560332.1|856381_856822_+|terminase	terminase small subunit	terminase	E0Y3R8	Staphylococcus_virus	100.0	1.3e-74
WP_009560330.1|856808_858086_+|terminase	PBSX family phage terminase large subunit	terminase	A0EWS5	Staphylococcus_virus	99.8	1.1e-248
WP_000921883.1|858096_859632_+|portal	phage portal protein	portal	Q4ZDN2	Staphylococcus_virus	99.6	3.8e-291
WP_001133043.1|859638_860634_+|capsid	minor capsid protein	capsid	E0Y3K7	Staphylococcus_virus	100.0	3.4e-184
WP_000072207.1|860706_860877_+	hypothetical protein	NA	Q4ZDF2	Staphylococcus_virus	100.0	3.3e-23
WP_000354305.1|861011_861626_+	DUF4355 domain-containing protein	NA	I1W646	Staphylococcus_phage	100.0	2.9e-40
WP_000438511.1|861639_862614_+|capsid	phage major capsid protein	capsid	E0Y3L0	Staphylococcus_virus	100.0	2.2e-183
WP_001114085.1|862635_862923_+	hypothetical protein	NA	S4V6D9	Staphylococcus_phage	100.0	4.7e-46
WP_000208959.1|862931_863264_+|head,tail	phage head-tail connector protein	head,tail	E0Y3L2	Staphylococcus_virus	100.0	7.1e-54
WP_001268305.1|863260_863563_+	hypothetical protein	NA	E0Y3L3	Staphylococcus_virus	100.0	2.0e-50
WP_001017818.1|863562_863910_+	HK97 gp10 family phage protein	NA	E0Y3L4	Staphylococcus_virus	100.0	4.1e-60
WP_000188652.1|863921_864305_+	hypothetical protein	NA	E0Y3L5	Staphylococcus_virus	100.0	2.6e-68
WP_000002577.1|864323_864905_+|tail	phage major tail protein, TP901-1 family	tail	A0A0F6N3L8	Staphylococcus_phage	100.0	4.9e-106
WP_001100164.1|864966_865332_+	hypothetical protein	NA	E0Y3L7	Staphylococcus_virus	100.0	9.6e-60
WP_000105584.1|865361_865706_+	hypothetical protein	NA	A0A0F6N3F7	Staphylococcus_phage	100.0	2.5e-57
WP_016028243.1|869200_870148_+|tail	phage tail family protein	tail	E0Y3M0	Staphylococcus_virus	100.0	2.8e-183
869536:869552	attR	GAAATTAGATAAAAACA	NA	NA	NA	NA
WP_016028244.1|870156_872058_+	hypothetical protein	NA	E0Y3M1	Staphylococcus_virus	100.0	0.0e+00
WP_000066419.1|872072_873983_+	minor structural protein	NA	Q8SDT4	Staphylococcus_phage	100.0	0.0e+00
WP_016028245.1|873982_875806_+|plate	phage baseplate upper protein	plate	E0Y3M3	Staphylococcus_virus	100.0	0.0e+00
WP_000705917.1|875805_876183_+	DUF2977 domain-containing protein	NA	E0Y3M4	Staphylococcus_virus	100.0	2.6e-60
WP_000782200.1|876185_876359_+	XkdX family protein	NA	A0A0F6N3L7	Staphylococcus_phage	100.0	6.6e-27
WP_000466777.1|876399_876699_+	DUF2951 domain-containing protein	NA	A0A0F6N3M6	Staphylococcus_phage	100.0	9.9e-47
WP_016028247.1|876835_878734_+	CHAP domain-containing protein	NA	E0Y3M7	Staphylococcus_virus	100.0	0.0e+00
WP_000276641.1|878746_879985_+|plate	BppU family phage baseplate upper protein	plate	E0Y3M8	Staphylococcus_virus	100.0	3.5e-210
WP_000398878.1|879989_880385_+	hypothetical protein	NA	Q4ZBP5	Staphylococcus_phage	100.0	2.7e-68
WP_000611512.1|880441_880696_+|holin	phage holin	holin	D2JLG4	Staphylococcus_phage	100.0	4.1e-41
WP_000861038.1|880707_881463_+	CHAP domain-containing protein	NA	D2JLG5	Staphylococcus_phage	100.0	3.4e-152
WP_000238962.1|881954_882749_+	phosphatidylinositol kinase	NA	E0Y3N2	Staphylococcus_virus	100.0	4.9e-149
WP_000278828.1|882755_883493_+	hypothetical protein	NA	E0Y3N3	Staphylococcus_virus	100.0	4.4e-136
>prophage 4
NZ_CP031131	Staphylococcus aureus strain E16SA093 chromosome, complete genome	2785564	1590229	1598559	2785564	tRNA	Staphylococcus_phage(16.67%)	7	NA	NA
WP_001213908.1|1590229_1591015_-	metal ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.3	8.0e-19
WP_000924220.1|1591140_1592031_-	deoxyribonuclease IV	NA	A0A2H4UU70	Bodo_saltans_virus	36.0	3.4e-26
WP_001062177.1|1592040_1593387_-	DEAD/DEAH box helicase	NA	A0A1V0SIR5	Klosneuvirus	34.0	2.4e-55
WP_000683933.1|1593500_1594601_-	Nif3-like dinuclear metal center hexameric protein	NA	A0A1S5V250	Saudi_moumouvirus	29.6	5.2e-08
WP_000624571.1|1594603_1595281_-|tRNA	tRNA (adenine-N(1))-methyltransferase	tRNA	NA	NA	NA	NA
WP_001283055.1|1595411_1596518_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	38.1	1.1e-37
WP_001217246.1|1596741_1598559_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	36.0	3.6e-54
>prophage 5
NZ_CP031131	Staphylococcus aureus strain E16SA093 chromosome, complete genome	2785564	1667897	1676937	2785564	tRNA	uncultured_Mediterranean_phage(50.0%)	7	NA	NA
WP_000364542.1|1667897_1668416_-	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	46.5	5.6e-29
WP_000595005.1|1668437_1670708_-	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	29.3	2.4e-63
WP_000749795.1|1670910_1673190_-	protein translocase subunit SecDF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.8	1.8e-31
WP_001160682.1|1673464_1673725_-	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	35.3	8.2e-05
WP_001112049.1|1673743_1674883_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.7	1.6e-84
WP_001019178.1|1674905_1675931_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_001005767.1|1675932_1676937_-	Holliday junction branch migration DNA helicase RuvB	NA	B3GAM6	uncultured_virus	29.1	1.7e-05
>prophage 6
NZ_CP031131	Staphylococcus aureus strain E16SA093 chromosome, complete genome	2785564	1808432	1865058	2785564	tRNA,transposase,protease	Staphylococcus_phage(95.45%)	55	NA	NA
WP_031871537.1|1808432_1810853_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	99.7	0.0e+00
WP_001025061.1|1811143_1812325_-	MFS transporter	NA	A0A2H4PQR6	Staphylococcus_phage	100.0	5.6e-218
WP_000764419.1|1813383_1813947_+	methyltransferase domain-containing protein	NA	A0A2H4PQV0	Staphylococcus_phage	99.5	8.3e-103
WP_000757543.1|1814066_1814468_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000266096.1|1816047_1816875_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_001790712.1|1816877_1816997_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001196354.1|1817108_1818110_+	proline dehydrogenase	NA	A0A2H4PQT6	Staphylococcus_phage	99.7	9.0e-185
WP_001008551.1|1818231_1818696_-	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	99.4	5.8e-70
WP_001159022.1|1818708_1819890_-	3,4-dihydroxy-2-butanone-4-phosphate synthase	NA	A0A2H4PQS2	Staphylococcus_phage	99.7	6.6e-227
WP_000493892.1|1819900_1820533_-	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	99.5	1.7e-112
WP_000384185.1|1820539_1821571_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	98.8	4.0e-196
WP_001664906.1|1822063_1823566_-	FAD-dependent oxidoreductase	NA	A0A2H4PQX2	Staphylococcus_phage	98.6	1.9e-29
WP_000221177.1|1824088_1824403_+	winged helix-turn-helix transcriptional regulator	NA	A0A2H4PQT4	Staphylococcus_phage	98.1	9.8e-53
WP_000989121.1|1824402_1825695_+	arsenite efflux transporter membrane subunit ArsB	NA	A0A2H4PQU3	Staphylococcus_phage	99.5	5.0e-228
WP_001032833.1|1825781_1826636_-	autolysin	NA	Q4ZCC7	Staphylococcus_virus	38.6	9.8e-39
WP_000384171.1|1826911_1827136_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000671052.1|1827334_1827805_+	RNA polymerase sigma factor	NA	A0A2H4PQT5	Staphylococcus_phage	99.4	1.0e-82
WP_001153742.1|1827917_1828361_+	competence protein ComK	NA	NA	NA	NA	NA
WP_020978228.1|1828347_1828791_-	hypothetical protein	NA	A0A2H4PQT8	Staphylococcus_phage	98.0	7.1e-57
WP_001168907.1|1829086_1829722_+|protease	CPBP family intramembrane metalloprotease SdpA	protease	NA	NA	NA	NA
WP_001096494.1|1830161_1830875_-	transaldolase	NA	M1PR54	Cyanophage	35.3	5.5e-19
WP_000091445.1|1831134_1831437_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001200542.1|1831692_1832058_+	fluoride efflux transporter CrcB	NA	A0A2H4PQR0	Staphylococcus_phage	100.0	3.6e-59
WP_000623477.1|1832054_1832408_+	CrcB family protein	NA	A0A2H4PQQ7	Staphylococcus_phage	94.9	1.0e-21
WP_000453317.1|1834405_1835239_-	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	99.6	3.5e-158
WP_000366163.1|1835450_1836359_-	NERD domain-containing protein	NA	A0A2H4PQQ8	Staphylococcus_phage	100.0	3.4e-138
WP_000933822.1|1836483_1837677_-	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	99.7	1.9e-218
WP_000109906.1|1838048_1839641_+	phosphoenolpyruvate carboxykinase (ATP)	NA	A0A2H4PQN1	Staphylococcus_phage	100.0	0.0e+00
WP_073392436.1|1839893_1840640_-	S9 family peptidase	NA	A0A2H4PQM6	Staphylococcus_phage	99.6	1.3e-143
WP_000672015.1|1840644_1841118_-	nucleoside triphosphatase YtkD	NA	A0A2H4PQM4	Staphylococcus_phage	99.4	5.5e-84
WP_000718107.1|1841183_1841441_+	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	100.0	7.2e-46
WP_000778537.1|1841437_1842439_-	o-succinylbenzoate synthase	NA	A0A2H4PQM0	Staphylococcus_phage	98.8	5.1e-188
WP_000348363.1|1842443_1843922_-	o-succinylbenzoate--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	98.2	2.5e-284
WP_072460539.1|1844080_1844536_-	DUF4909 domain-containing protein	NA	A0A2H4PQN7	Staphylococcus_phage	99.3	1.0e-79
WP_001789021.1|1844838_1845489_+	calcium-binding protein	NA	A0A2H4PQM8	Staphylococcus_phage	98.6	5.2e-56
WP_000070648.1|1845569_1846565_+	DUF4352 domain-containing protein	NA	A0A2H4PQN2	Staphylococcus_phage	94.4	9.6e-70
WP_000669021.1|1846638_1847265_+	hypothetical protein	NA	A0A2H4PQM7	Staphylococcus_phage	91.3	1.3e-88
WP_000627547.1|1847305_1847647_+	DUF3969 family protein	NA	A0A2H4PQN6	Staphylococcus_phage	95.6	3.9e-55
WP_000864139.1|1848516_1849074_-	ImmA/IrrE family metallo-endopeptidase	NA	A0A2H4PQN8	Staphylococcus_phage	97.5	3.1e-78
WP_114561616.1|1849258_1849702_-	DUF1433 domain-containing protein	NA	NA	NA	NA	NA
WP_000072558.1|1850348_1851467_-	restriction endonuclease subunit S	NA	A0A2H4PQP5	Staphylococcus_phage	35.1	7.6e-39
WP_020978242.1|1851459_1853199_-	type I restriction-modification system subunit M	NA	A0A2H4PQP4	Staphylococcus_phage	99.2	9.9e-288
WP_001791797.1|1853179_1853314_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001038706.1|1853378_1854098_-|protease	serine protease SplD	protease	A0A2H4PQP9	Staphylococcus_phage	99.2	5.1e-129
WP_001038867.1|1854218_1854938_-|protease	serine protease SplC	protease	A0A2H4PQP7	Staphylococcus_phage	99.2	1.2e-130
WP_001039444.1|1854995_1855718_-|protease	serine protease SplB	protease	A0A2H4PQN0	Staphylococcus_phage	100.0	6.4e-132
WP_001039432.1|1855842_1856550_-|protease	serine protease SplA	protease	A0A2H4PQN3	Staphylococcus_phage	97.9	1.6e-127
WP_001092759.1|1857513_1858092_+	DUF4888 domain-containing protein	NA	A0A2H4PQH6	Staphylococcus_phage	59.6	1.9e-49
WP_000469595.1|1858565_1858784_-	hypothetical protein	NA	A0A2H4PQH0	Staphylococcus_phage	81.9	1.4e-26
WP_000550252.1|1859039_1859513_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000543854.1|1859517_1860309_+	DUF1828 domain-containing protein	NA	NA	NA	NA	NA
WP_000782463.1|1860679_1861663_-	bi-component leukocidin LukED subunit D	NA	A0A2H4PQH7	Staphylococcus_phage	99.4	1.8e-185
WP_000473596.1|1861664_1862600_-	beta-channel forming cytolysin	NA	A0A2H4PQI5	Staphylococcus_phage	100.0	1.4e-174
WP_000209099.1|1863963_1864752_+	DUF1828 domain-containing protein	NA	A0A2H4PQI0	Staphylococcus_phage	95.0	1.3e-138
WP_001792814.1|1864929_1865058_+|transposase	IS3 family transposase	transposase	A0A2H4PQU1	Staphylococcus_phage	66.7	6.6e-08
>prophage 7
NZ_CP031131	Staphylococcus aureus strain E16SA093 chromosome, complete genome	2785564	1952210	1994187	2785564	tRNA,transposase,integrase,protease	Bacillus_virus(25.0%)	35	1978178:1978194	1999010:1999026
WP_000545370.1|1952210_1953638_-|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB	tRNA	NA	NA	NA	NA
WP_000027917.1|1953650_1955108_-|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA	tRNA	NA	NA	NA	NA
WP_000170162.1|1955109_1955412_-|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC	tRNA	NA	NA	NA	NA
WP_000957020.1|1955779_1957318_+	sodium/proline symporter PutP	NA	NA	NA	NA	NA
WP_031871503.1|1957406_1958606_-	CamS family sex pheromone protein	NA	NA	NA	NA	NA
WP_000774565.1|1958618_1960622_-	NAD-dependent DNA ligase LigA	NA	A0A0K2QQN8	Ralstonia_phage	36.1	5.8e-114
WP_000992921.1|1960625_1962818_-	DNA helicase PcrA	NA	A7KV33	Bacillus_phage	42.2	1.0e-135
WP_000272071.1|1962814_1963507_-	heptaprenylglyceryl phosphate synthase	NA	NA	NA	NA	NA
WP_001165363.1|1963678_1963981_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000572878.1|1964088_1965384_-	adenylosuccinate lyase	NA	A0A1B3B081	Gordonia_phage	32.9	1.6e-16
WP_000827764.1|1966244_1967411_+|protease	cysteine protease staphopain A	protease	NA	NA	NA	NA
WP_020978260.1|1967441_1967768_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000669864.1|1968059_1968233_-	NETI motif-containing protein	NA	NA	NA	NA	NA
WP_000011542.1|1968213_1968816_-	DUF2179 domain-containing protein	NA	NA	NA	NA	NA
WP_000040866.1|1969086_1969908_-	ammonia-dependent NAD(+) synthetase	NA	G3MA24	Bacillus_virus	52.7	2.3e-69
WP_000284433.1|1969900_1971370_-	nicotinate phosphoribosyltransferase	NA	G3MA18	Bacillus_virus	45.1	3.5e-108
WP_000897635.1|1971553_1972630_+	nitric oxide synthase oxygenase	NA	NA	NA	NA	NA
WP_001177828.1|1972649_1973444_+	prephenate dehydratase	NA	NA	NA	NA	NA
WP_001802312.1|1973515_1973623_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000323163.1|1973633_1975196_-	SLC13 family permease	NA	NA	NA	NA	NA
WP_000275706.1|1975400_1976498_-	pectate lyase	NA	U5PWM6	Bacillus_phage	34.9	2.5e-47
WP_000149686.1|1976869_1977430_+	cysteine hydrolase	NA	G3MA16	Bacillus_virus	41.2	2.0e-32
WP_001140871.1|1977482_1978412_+	manganese-dependent inorganic pyrophosphatase	NA	NA	NA	NA	NA
1978178:1978194	attL	AGATTTAGAAAAAGAAA	NA	NA	NA	NA
WP_000637587.1|1978604_1978778_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001021226.1|1978829_1980209_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_000181322.1|1980328_1981357_-	lactonase family protein	NA	NA	NA	NA	NA
WP_001096369.1|1982184_1983942_-	beta-lactam sensor/signal transducer BlaR1	NA	NA	NA	NA	NA
WP_000733621.1|1984048_1984894_+	penicillin-hydrolyzing class A beta-lactamase BlaZ	NA	A0A1B0VBP7	Salmonella_phage	34.3	3.4e-31
WP_114561617.1|1984944_1986624_-|transposase	IS1182 family transposase	transposase	A0ZS58	Staphylococcus_virus	77.4	4.2e-243
WP_025173837.1|1986947_1988267_+|transposase	ISL3-like element IS1181 family transposase	transposase	NA	NA	NA	NA
WP_104832443.1|1988526_1989705_-|transposase	IS110 family transposase	transposase	A0A1X9I619	Streptococcus_phage	38.0	2.3e-62
WP_000612780.1|1990195_1990606_+	YolD-like family protein	NA	U3PG23	Staphylococcus_phage	54.2	1.4e-30
WP_000514485.1|1990634_1991000_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000026854.1|1991008_1993072_-|integrase	tyrosine-type recombinase/integrase	integrase	NA	NA	NA	NA
WP_000706211.1|1993074_1994187_-|integrase	tyrosine-type recombinase/integrase	integrase	P97010	Streptococcus_pyogenes_phage	31.0	8.7e-11
1999010:1999026	attR	AGATTTAGAAAAAGAAA	NA	NA	NA	NA
>prophage 8
NZ_CP031131	Staphylococcus aureus strain E16SA093 chromosome, complete genome	2785564	2008339	2053525	2785564	tail,capsid,holin,head,portal,terminase,integrase,protease	Staphylococcus_phage(98.44%)	66	2027184:2027201	2051512:2051529
WP_000669789.1|2008339_2008519_+	hypothetical protein	NA	A0A1W6JQ29	Staphylococcus_phage	100.0	2.2e-25
WP_001791826.1|2008829_2009090_+	hypothetical protein	NA	M9NS66	Staphylococcus_phage	100.0	2.3e-23
WP_000727649.1|2010166_2010616_+	chemotaxis-inhibiting protein CHIPS	NA	A0A1P8L6A8	Staphylococcus_phage	100.0	1.1e-78
WP_020444758.1|2010710_2011169_-	amidase	NA	R9QTN8	Staphylococcus_phage	98.7	4.9e-85
WP_000919350.1|2011695_2012187_-	staphylokinase	NA	A0A1X9H028	Staphylococcus_phage	100.0	9.5e-87
WP_000861038.1|2012377_2013133_-	CHAP domain-containing protein	NA	D2JLG5	Staphylococcus_phage	100.0	3.4e-152
WP_000611512.1|2013144_2013399_-|holin	phage holin	holin	D2JLG4	Staphylococcus_phage	100.0	4.1e-41
WP_001791821.1|2013450_2013558_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011447039.1|2013610_2013787_-|holin	putative holin-like toxin	holin	D2JLG3	Staphylococcus_phage	98.3	2.2e-22
WP_000539688.1|2013936_2014233_-	DUF2951 domain-containing protein	NA	D2JLG2	Staphylococcus_phage	100.0	2.9e-46
WP_001040261.1|2014290_2014578_-	hypothetical protein	NA	D2JLG1	Staphylococcus_phage	100.0	1.3e-43
WP_001153681.1|2014624_2014777_-	hypothetical protein	NA	D2JLG0	Staphylococcus_phage	100.0	5.2e-20
WP_000582165.1|2014766_2018552_-	hypothetical protein	NA	A0A1X9H0H3	Staphylococcus_phage	98.5	0.0e+00
WP_000567408.1|2018567_2020052_-|tail	phage tail protein	tail	A0A2I6PDJ0	Staphylococcus_phage	100.0	1.2e-297
WP_001796452.1|2020048_2024578_-|tail	phage tail tape measure protein	tail	A0A2I6PDK2	Staphylococcus_phage	99.8	0.0e+00
WP_001096355.1|2024822_2025173_-	hypothetical protein	NA	G4KNQ8	Staphylococcus_phage	100.0	7.8e-59
WP_071621395.1|2025222_2025447_-	hypothetical protein	NA	A0A075LYE8	Staphylococcus_phage	100.0	3.0e-32
WP_000268733.1|2025488_2026133_-|tail	phage tail protein	tail	A0A1X9H0J2	Staphylococcus_phage	100.0	1.5e-119
WP_000565498.1|2026133_2026541_-	hypothetical protein	NA	G4KNQ6	Staphylococcus_phage	100.0	7.1e-72
WP_000114227.1|2026537_2026942_-	hypothetical protein	NA	G4KNQ5	Staphylococcus_phage	99.3	2.1e-68
WP_000755150.1|2026938_2027301_-|head,tail	head-tail adaptor protein	head,tail	G4KNQ4	Staphylococcus_phage	100.0	4.4e-65
2027184:2027201	attL	ATAATTTTTCTTCTTTTT	NA	NA	NA	NA
WP_000150936.1|2027284_2027569_-|head,tail	phage head-tail adapter protein	head,tail	A0A2I6PDJ5	Staphylococcus_phage	100.0	2.3e-45
WP_000238236.1|2027558_2027843_-	hypothetical protein	NA	A0A2I6PDJ3	Staphylococcus_phage	100.0	1.8e-45
WP_000154559.1|2027862_2029008_-|capsid	phage major capsid protein	capsid	G4KNQ3	Staphylococcus_phage	100.0	9.6e-215
WP_000642728.1|2029031_2029769_-|protease	Clp protease ClpP	protease	G4KNQ2	Staphylococcus_phage	100.0	1.8e-129
WP_000025274.1|2029752_2030940_-|portal	phage portal protein	portal	A0A2I6PDI1	Staphylococcus_phage	100.0	1.0e-219
WP_000625088.1|2030955_2032617_-|terminase	terminase large subunit	terminase	A0A2I6PDJ8	Staphylococcus_phage	100.0	0.0e+00
WP_000402904.1|2032613_2032958_-	hypothetical protein	NA	G4KNP9	Staphylococcus_phage	100.0	9.4e-57
WP_000988336.1|2033088_2033388_-	HNH endonuclease	NA	A0EWY8	Staphylococcus_phage	100.0	4.6e-52
WP_000590122.1|2033619_2034036_-	hypothetical protein	NA	G4KNP7	Staphylococcus_phage	100.0	1.3e-76
WP_001622114.1|2034063_2034264_-	DUF1514 family protein	NA	A0A2I6PDV9	Staphylococcus_phage	98.5	4.0e-28
WP_000595265.1|2034263_2034413_-	transcriptional activator RinB	NA	A0A1W6JPZ2	Staphylococcus_phage	100.0	4.8e-18
WP_000592207.1|2034409_2034796_-	hypothetical protein	NA	W5R986	Staphylococcus_phage	100.0	3.0e-64
WP_000195803.1|2034792_2034999_-	DUF1381 domain-containing protein	NA	A0A0H3U2R7	Staphylococcus_phage	100.0	1.3e-29
WP_001282074.1|2034995_2035241_-	hypothetical protein	NA	A0A2I6PDW7	Staphylococcus_phage	100.0	5.0e-36
WP_001066447.1|2035277_2035814_-	hypothetical protein	NA	A0A0H3U2Z8	Staphylococcus_phage	100.0	7.2e-96
WP_001065097.1|2035963_2036218_-	DUF1024 family protein	NA	A0A0H3U469	Staphylococcus_phage	100.0	5.0e-39
WP_000131370.1|2036232_2036475_-	hypothetical protein	NA	Q4ZDP7	Staphylococcus_virus	95.0	2.1e-39
WP_000101288.1|2036478_2036847_-	hypothetical protein	NA	A0A0H3U2T3	Staphylococcus_phage	100.0	2.0e-49
WP_000401960.1|2036859_2037264_-	RusA family crossover junction endodeoxyribonuclease	NA	A0EWX6	Staphylococcus_phage	100.0	1.9e-72
WP_000338530.1|2037272_2037491_-	hypothetical protein	NA	A0A2I6PDG4	Staphylococcus_phage	100.0	1.0e-37
WP_000148321.1|2037497_2038391_-	DnaD domain-containing protein	NA	A0A2I6PDG7	Staphylococcus_phage	99.3	5.5e-141
WP_000610648.1|2038420_2038891_-	single-stranded DNA-binding protein	NA	A0EWX3	Staphylococcus_phage	98.7	1.3e-80
WP_073394849.1|2038891_2039509_-	MBL fold metallo-hydrolase	NA	A0A2I6PDI9	Staphylococcus_phage	100.0	9.1e-87
WP_000138475.1|2039589_2040510_-	recombinase	NA	A0A2I6PDH5	Staphylococcus_phage	100.0	2.3e-166
WP_000700555.1|2040511_2042455_-	AAA family ATPase	NA	S4V9K6	Staphylococcus_phage	100.0	0.0e+00
WP_001205732.1|2042463_2042727_-	hypothetical protein	NA	A0A2I6PDG2	Staphylococcus_phage	100.0	7.7e-43
WP_000291510.1|2042735_2042996_-	DUF1108 family protein	NA	A0A1P8L6F5	Staphylococcus_phage	100.0	5.2e-44
WP_000165371.1|2043000_2043303_-	DUF2482 family protein	NA	A0A1P8L6F8	Staphylococcus_phage	100.0	7.0e-48
WP_000048129.1|2043397_2043559_-	DUF1270 family protein	NA	A0A1P8L6G0	Staphylococcus_phage	100.0	1.9e-20
WP_001120201.1|2043555_2043879_-	DUF771 domain-containing protein	NA	A0A075LYF5	Staphylococcus_phage	100.0	3.0e-57
WP_000762519.1|2043933_2044314_+	DUF2513 domain-containing protein	NA	Q9T1Z5	Staphylococcus_phage	99.2	3.4e-68
WP_001148862.1|2044300_2044498_-	hypothetical protein	NA	O80075	Staphylococcus_phage	87.7	3.5e-24
WP_001148605.1|2044513_2045266_-	oxidoreductase	NA	M9NTH5	Staphylococcus_phage	100.0	1.1e-139
WP_000128907.1|2045316_2045646_+	hypothetical protein	NA	M9NS98	Staphylococcus_phage	100.0	2.7e-53
WP_001025404.1|2045634_2045850_-	DUF2829 domain-containing protein	NA	A0A0H3U4C7	Staphylococcus_phage	100.0	4.8e-35
WP_000854073.1|2045865_2046129_-	helix-turn-helix transcriptional regulator	NA	A0A2I6PF09	Staphylococcus_phage	98.9	2.1e-40
WP_001801500.1|2046125_2046299_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001031454.1|2046261_2046975_+	helix-turn-helix transcriptional regulator	NA	M9NUL0	Staphylococcus_phage	100.0	1.2e-130
WP_000759682.1|2046990_2047923_+	ATP-dependent helicase	NA	A0A2I6PEZ7	Staphylococcus_phage	100.0	5.7e-173
WP_000591749.1|2047928_2048270_+	hypothetical protein	NA	A0A2I6PF04	Staphylococcus_phage	100.0	4.6e-56
WP_000705248.1|2048473_2048656_+	hypothetical protein	NA	M9NSW6	Staphylococcus_phage	100.0	4.1e-27
WP_000825947.1|2048755_2049220_+	hypothetical protein	NA	A0EWV3	Staphylococcus_phage	100.0	1.1e-28
WP_000857191.1|2049278_2050316_+|integrase	site-specific integrase	integrase	A0EWV2	Staphylococcus_phage	100.0	9.1e-180
WP_000595326.1|2051434_2052451_-	bi-component leukocidin LukGH subunit G	NA	A0A2I6PER8	Staphylococcus_phage	29.3	5.1e-26
2051512:2051529	attR	ATAATTTTTCTTCTTTTT	NA	NA	NA	NA
WP_000791419.1|2052472_2053525_-	bi-component leukocidin LukGH subunit H	NA	A0A2I6PER8	Staphylococcus_phage	31.8	2.4e-34
