assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_003290205.1_ASM329020v1	NZ_CP029981	Escherichia coli strain 99-3165 chromosome, complete genome	1	965888-966139	1	PILER-CR	no		c2c9_V-U4,RT,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas1,cas2,DEDDh,WYL,DinG	Orphan	TTTTGGAGGGGCAGAAAGATGAATGACTGTCCACGACACTATACCCAAAAGAAA	54	0	0	NA	NA	NA	2	2	Orphan	c2c9_V-U4,RT,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas1,cas2,DEDDh,WYL,DinG	NA,NA|55aa|down_8|NZ_CP029981.1_978950_979115_-	NA|158aa|up_9|NZ_CP029981.1_955498_955972_-	PRK11425, PRK11425, PTS N-acetylgalactosamine transporter subunit IIB	NA|427aa|up_8|NZ_CP029981.1_955994_957275_-	PRK15458, PRK15458, tagatose 6-phosphate aldolase subunit KbaZ; Provisional	NA|270aa|up_7|NZ_CP029981.1_957523_958333_+	PRK09802, PRK09802, DeoR family transcriptional regulator	NA|155aa|up_6|NZ_CP029981.1_958387_958852_-	pfam11663, Toxin_YhaV, Toxin with endonuclease activity, of toxin-antitoxin system	NA|112aa|up_5|NZ_CP029981.1_958851_959187_-	PRK09974, PRK09974, type II toxin-antitoxin system PrlF family antitoxin	NA|524aa|up_4|NZ_CP029981.1_959335_960907_-	TIGR03248, galactar-dH20, galactarate dehydratase	NA|433aa|up_3|NZ_CP029981.1_961281_962580_+	TIGR00893, Probable_glucarate_transporter, D-galactonate transporter	NA|257aa|up_2|NZ_CP029981.1_962595_963366_+	PRK10558, PRK10558, alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional	NA|297aa|up_1|NZ_CP029981.1_963395_964286_+	PRK11559, garR, tartronate semialdehyde reductase; Provisional	NA|382aa|up_0|NZ_CP029981.1_964382_965528_+	PRK10342, PRK10342, glycerate kinase I; Provisional	NA|330aa|down_0|NZ_CP029981.1_968129_969119_+	PRK08638, PRK08638, bifunctional threonine ammonia-lyase/L-serine ammonia-lyase TdcB	NA|444aa|down_1|NZ_CP029981.1_969140_970472_+	PRK13629, PRK13629, threonine/serine transporter TdcC; Provisional	NA|403aa|down_2|NZ_CP029981.1_970497_971706_+	PRK12379, PRK12379, propionate kinase	NA|765aa|down_3|NZ_CP029981.1_971739_974034_+	cd01678, PFL1, Pyruvate formate lyase 1	NA|130aa|down_4|NZ_CP029981.1_974047_974437_+	PRK11401, PRK11401, enamine/imine deaminase	NA|455aa|down_5|NZ_CP029981.1_974508_975873_+	PRK15040, PRK15040, L-serine ammonia-lyase	NA|444aa|down_6|NZ_CP029981.1_976147_977479_+	TIGR00814, membrane_transport_protein_YhjV, serine transporter	NA|437aa|down_7|NZ_CP029981.1_977506_978817_+	COG3681, COG3681, L-cysteine desulfidase [Amino acid transport and metabolism]	NA|55aa|down_8|NZ_CP029981.1_978950_979115_-	NA	NA|234aa|down_9|NZ_CP029981.1_979137_979839_-	COG1741, COG1741, Pirin-related protein [General function prediction only]
GCF_003290205.1_ASM329020v1	NZ_CP029981	Escherichia coli strain 99-3165 chromosome, complete genome	2	1369061-1369272	2,1,1	PILER-CR,CRISPRCasFinder,CRT	no	cas3	c2c9_V-U4,RT,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas1,cas2,DEDDh,WYL,DinG	Unclear	GTGTTCCCCGCGCCAGCGGGGATAAACC,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	28,29,29	0	0	NA	NA	I-E:I-E:I-E	3,3,3	3	Unclear	c2c9_V-U4,RT,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas1,cas2,DEDDh,WYL,DinG	NA,NA	NA|919aa|up_9|NZ_CP029981.1_1355653_1358410_-	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional	NA|434aa|up_8|NZ_CP029981.1_1358466_1359768_+	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA|745aa|up_7|NZ_CP029981.1_1359815_1362050_+	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|83aa|up_6|NZ_CP029981.1_1362127_1362376_+	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE	NA|112aa|up_5|NZ_CP029981.1_1362375_1362711_+	PRK09907, PRK09907, endoribonuclease MazF	NA|264aa|up_4|NZ_CP029981.1_1362781_1363573_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|546aa|up_3|NZ_CP029981.1_1363800_1365438_+	PRK05380, pyrG, CTP synthetase; Validated	NA|433aa|up_2|NZ_CP029981.1_1365525_1366824_+	PRK00077, eno, enolase; Provisional	NA|291aa|up_1|NZ_CP029981.1_1366883_1367756_-	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|224aa|up_0|NZ_CP029981.1_1368049_1368721_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|493aa|down_0|NZ_CP029981.1_1369910_1371389_-	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|426aa|down_1|NZ_CP029981.1_1371415_1372693_-	cd06174, MFS, Major Facilitator Superfamily	NA|262aa|down_2|NZ_CP029981.1_1373011_1373797_+	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs	NA|485aa|down_3|NZ_CP029981.1_1373866_1375321_+	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|470aa|down_4|NZ_CP029981.1_1375342_1376752_+	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	NA|260aa|down_5|NZ_CP029981.1_1376729_1377509_+	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|298aa|down_6|NZ_CP029981.1_1377472_1378366_+	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|192aa|down_7|NZ_CP029981.1_1378513_1379089_-	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|87aa|down_8|NZ_CP029981.1_1379105_1379366_-	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|424aa|down_9|NZ_CP029981.1_1379356_1380628_-	PRK10015, PRK10015, oxidoreductase; Provisional
GCF_003290205.1_ASM329020v1	NZ_CP029981	Escherichia coli strain 99-3165 chromosome, complete genome	3	1395162-1395435	2,3,2	CRISPRCasFinder,PILER-CR,CRT	no	cas3,cas8e,cse2gr11,cas7,cas1,cas2	c2c9_V-U4,RT,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas1,cas2,DEDDh,WYL,DinG	Type I-E	TGAGTTCCCCGCGCCAGCGGGGATAAACCG,TGAGTTCCCCGCGCCAGCGGGGATAAACCG,GAGTTCCCCGCGCCAGCGGGGATAAACCG	30,30,29	0	0	NA	NA	I-E:I-E:I-E	3,2,4	4	TypeI-E	c2c9_V-U4,RT,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas1,cas2,DEDDh,WYL,DinG	NA,NA	NA|122aa|up_9|NZ_CP029981.1_1380705_1381071_-	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|600aa|up_8|NZ_CP029981.1_1381386_1383186_+	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|571aa|up_7|NZ_CP029981.1_1383185_1384898_+	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|245aa|up_6|NZ_CP029981.1_1384971_1385706_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	cas3|889aa|up_5|NZ_CP029981.1_1386064_1388731_+	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	cas8e|451aa|up_4|NZ_CP029981.1_1389145_1390498_+	PRK09693, PRK09693, Cascade antiviral complex protein; Validated	cse2gr11|161aa|up_3|NZ_CP029981.1_1390646_1391129_+	cd09670, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas7|364aa|up_2|NZ_CP029981.1_1391141_1392233_+	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cas1|306aa|up_1|NZ_CP029981.1_1393853_1394771_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|95aa|up_0|NZ_CP029981.1_1394772_1395057_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|346aa|down_0|NZ_CP029981.1_1395455_1396493_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_1|NZ_CP029981.1_1396744_1397653_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|476aa|down_2|NZ_CP029981.1_1397654_1399082_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_3|NZ_CP029981.1_1399081_1399687_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|108aa|down_4|NZ_CP029981.1_1399736_1400060_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|104aa|down_5|NZ_CP029981.1_1400253_1400565_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|237aa|down_6|NZ_CP029981.1_1400583_1401294_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|160aa|down_7|NZ_CP029981.1_1401293_1401773_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|350aa|down_8|NZ_CP029981.1_1401769_1402819_+	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|254aa|down_9|NZ_CP029981.1_1402799_1403561_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional
GCF_003290205.1_ASM329020v1	NZ_CP029981	Escherichia coli strain 99-3165 chromosome, complete genome	4	2564011-2564134	3	CRISPRCasFinder	no	DEDDh	c2c9_V-U4,RT,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas1,cas2,DEDDh,WYL,DinG	Unclear	CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	43	0	0	NA	NA	NA	1	1	Orphan	c2c9_V-U4,RT,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas1,cas2,DEDDh,WYL,DinG	NA,NA|30aa|down_7|NZ_CP029981.1_2573030_2573120_+	NA|471aa|up_9|NZ_CP029981.1_2553465_2554878_-	PRK09206, PRK09206, pyruvate kinase PykF	NA|70aa|up_8|NZ_CP029981.1_2555434_2555644_+	PRK10292, PRK10292, fumarate hydratase FumD	NA|209aa|up_7|NZ_CP029981.1_2556098_2556725_+	PRK09898, PRK09898, ferredoxin-like protein	NA|701aa|up_6|NZ_CP029981.1_2556745_2558848_+	PRK09849, PRK09849, putative oxidoreductase; Provisional	NA|213aa|up_5|NZ_CP029981.1_2558860_2559499_+	PRK09947, PRK09947, YdhW family putative oxidoreductase system protein	NA|223aa|up_4|NZ_CP029981.1_2559562_2560231_+	TIGR03149, cyt_nit_nrfC, cytochrome c nitrite reductase, Fe-S protein	NA|262aa|up_3|NZ_CP029981.1_2560227_2561013_+	PRK15006, PRK15006, thiosulfate reductase cytochrome B subunit; Provisional	NA|271aa|up_2|NZ_CP029981.1_2561016_2561829_+	PRK09946, PRK09946, hypothetical protein; Provisional	NA|535aa|up_1|NZ_CP029981.1_2561840_2563445_-	PRK09897, PRK09897, FAD-NAD(P)-binding protein	NA|102aa|up_0|NZ_CP029981.1_2563570_2563876_-	PRK11118, PRK11118, putative monooxygenase; Provisional	NA|419aa|down_0|NZ_CP029981.1_2564448_2565705_+	PRK09945, PRK09945, hypothetical protein; Provisional	NA|458aa|down_1|NZ_CP029981.1_2565745_2567119_-	PRK01766, PRK01766, multidrug efflux protein; Reviewed	NA|214aa|down_2|NZ_CP029981.1_2567333_2567975_+	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional	NA|383aa|down_3|NZ_CP029981.1_2568014_2569163_-	PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase	NA|404aa|down_4|NZ_CP029981.1_2569453_2570665_-	PRK11043, PRK11043, Bcr/CflA family multidrug efflux MFS transporter	NA|311aa|down_5|NZ_CP029981.1_2570777_2571710_+	PRK11074, PRK11074, putative DNA-binding transcriptional regulator; Provisional	NA|342aa|down_6|NZ_CP029981.1_2571706_2572732_-	PRK10703, PRK10703, HTH-type transcriptional repressor PurR	NA|30aa|down_7|NZ_CP029981.1_2573030_2573120_+	NA	NA|390aa|down_8|NZ_CP029981.1_2573285_2574455_+	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]	NA|194aa|down_9|NZ_CP029981.1_2574689_2575271_-	PRK10543, PRK10543, superoxide dismutase [Fe]
GCF_003290205.1_ASM329020v1	NZ_CP029981	Escherichia coli strain 99-3165 chromosome, complete genome	5	3186408-3186499	4	CRISPRCasFinder	no		c2c9_V-U4,RT,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas1,cas2,DEDDh,WYL,DinG	Orphan	CCACCTTTTTTACCTGCTTCAGATGC	26	0	0	NA	NA	NA	1	1	Orphan	c2c9_V-U4,RT,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas1,cas2,DEDDh,WYL,DinG	NA|70aa|up_9|NZ_CP029981.1_3175484_3175694_-,NA	NA|70aa|up_9|NZ_CP029981.1_3175484_3175694_-	NA	NA|1321aa|up_8|NZ_CP029981.1_3175748_3179711_+	PRK11809, putA, trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed	NA|213aa|up_7|NZ_CP029981.1_3179750_3180389_-	PRK15008, PRK15008, HTH-type transcriptional regulator RutR; Provisional	NA|364aa|up_6|NZ_CP029981.1_3180676_3181768_+	TIGR03612, RutA, pyrimidine utilization protein A	NA|231aa|up_5|NZ_CP029981.1_3181767_3182460_+	TIGR03614, RutB, pyrimidine utilization protein B	NA|129aa|up_4|NZ_CP029981.1_3182471_3182858_+	TIGR03610, RutC, pyrimidine utilization protein C	NA|267aa|up_3|NZ_CP029981.1_3182865_3183666_+	TIGR03611, RutD, pyrimidine utilization protein D	NA|197aa|up_2|NZ_CP029981.1_3183675_3184266_+	PRK05365, PRK05365, malonic semialdehyde reductase; Provisional	NA|165aa|up_1|NZ_CP029981.1_3184276_3184771_+	TIGR03615, flavoprotein_oxidoreductase, pyrimidine utilization flavin reductase protein F	NA|443aa|up_0|NZ_CP029981.1_3184791_3186120_+	TIGR03616, Putative_pyrimidine_permease_RutG, pyrimidine utilization transport protein G	NA|199aa|down_0|NZ_CP029981.1_3186922_3187519_+	PRK03767, PRK03767, NAD(P)H:quinone oxidoreductase; Provisional	NA|76aa|down_1|NZ_CP029981.1_3187539_3187767_+	PRK10174, PRK10174, hypothetical protein; Provisional	NA|414aa|down_2|NZ_CP029981.1_3187804_3189046_-	PRK10173, PRK10173, glucose-1-phosphatase/inositol phosphatase; Provisional	NA|419aa|down_3|NZ_CP029981.1_3189338_3190595_-	PRK09784, PRK09784, YccE family protein	NA|307aa|down_4|NZ_CP029981.1_3190855_3191776_+	PRK10266, PRK10266, curved DNA-binding protein	NA|102aa|down_5|NZ_CP029981.1_3191775_3192081_+	PRK10265, PRK10265, chaperone modulator CbpM	NA|200aa|down_6|NZ_CP029981.1_3192232_3192832_-	PRK04976, torD, chaperone protein TorD; Validated	NA|849aa|down_7|NZ_CP029981.1_3192828_3195375_-	PRK15102, PRK15102, trimethylamine-N-oxide reductase TorA	NA|391aa|down_8|NZ_CP029981.1_3195374_3196547_-	PRK15032, PRK15032, pentaheme c-type cytochrome TorC	NA|231aa|down_9|NZ_CP029981.1_3196676_3197369_+	PRK10766, PRK10766, two-component system response regulator TorR
GCF_003290205.1_ASM329020v1	NZ_CP029981	Escherichia coli strain 99-3165 chromosome, complete genome	6	3329554-3329637	5	CRISPRCasFinder	no		c2c9_V-U4,RT,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas1,cas2,DEDDh,WYL,DinG	Orphan	ATCTGCCTGTACGGCAGTGAACT	23	0	0	NA	NA	I-F	1	1	Orphan	c2c9_V-U4,RT,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas1,cas2,DEDDh,WYL,DinG	NA,NA	NA|431aa|up_9|NZ_CP029981.1_3314437_3315730_-	PRK05431, PRK05431, seryl-tRNA synthetase; Provisional	NA|448aa|up_8|NZ_CP029981.1_3315820_3317164_-	PRK13342, PRK13342, recombination factor protein RarA; Reviewed	NA|204aa|up_7|NZ_CP029981.1_3317174_3317786_-	TIGR00547, Outer-membrane_lipoprotein_carrier_protein, periplasmic chaperone LolA	NA|1408aa|up_6|NZ_CP029981.1_3317940_3322164_-	PRK10263, PRK10263, DNA translocase FtsK; Provisional	NA|165aa|up_5|NZ_CP029981.1_3322298_3322793_-	PRK11169, PRK11169, leucine-responsive transcriptional regulator Lrp	NA|322aa|up_4|NZ_CP029981.1_3323337_3324303_+	PRK10262, PRK10262, thioredoxin reductase; Provisional	NA|589aa|up_3|NZ_CP029981.1_3324425_3326192_+	PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|574aa|up_2|NZ_CP029981.1_3326192_3327914_+	PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|235aa|up_1|NZ_CP029981.1_3327955_3328660_+	PRK00301, aat, leucyl/phenylalanyl-tRNA--protein transferase; Reviewed	NA|73aa|up_0|NZ_CP029981.1_3328944_3329163_+	PRK00276, infA, translation initiation factor IF-1; Validated	NA|759aa|down_0|NZ_CP029981.1_3329848_3332125_-	PRK11034, clpA, ATP-dependent Clp protease ATP-binding subunit; Provisional	NA|107aa|down_1|NZ_CP029981.1_3332155_3332476_-	PRK00033, clpS, ATP-dependent Clp protease adaptor protein ClpS; Reviewed	NA|75aa|down_2|NZ_CP029981.1_3332798_3333023_+	PRK09937, PRK09937, cold shock-like protein CspD	NA|649aa|down_3|NZ_CP029981.1_3333095_3335042_-	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB	NA|372aa|down_4|NZ_CP029981.1_3335038_3336154_-	PRK11578, PRK11578, macrolide transporter subunit MacA; Provisional	NA|319aa|down_5|NZ_CP029981.1_3336304_3337261_+	COG2990, VirK, Uncharacterized protein conserved in bacteria [Function unknown]	NA|553aa|down_6|NZ_CP029981.1_3337257_3338916_-	COG3593, COG3593, Predicted ATP-dependent endonuclease of the OLD family [DNA replication, recombination, and repair]	NA|232aa|down_7|NZ_CP029981.1_3339341_3340037_+	PRK05420, PRK05420, aquaporin Z; Provisional	NA|300aa|down_8|NZ_CP029981.1_3340531_3341431_+	COG2431, COG2431, Predicted membrane protein [Function unknown]	NA|551aa|down_9|NZ_CP029981.1_3341574_3343227_+	PRK05290, PRK05290, hybrid cluster protein; Provisional
GCF_003290205.1_ASM329020v1	NZ_CP029981	Escherichia coli strain 99-3165 chromosome, complete genome	7	3463137-3463281	6	CRISPRCasFinder	no		c2c9_V-U4,RT,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas1,cas2,DEDDh,WYL,DinG	Orphan	GTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACAATAAGTGCCGGATGC	52	0	0	NA	NA	NA	1	1	Orphan	c2c9_V-U4,RT,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas1,cas2,DEDDh,WYL,DinG	NA|56aa|up_3|NZ_CP029981.1_3460179_3460347_+,NA	NA|62aa|up_9|NZ_CP029981.1_3454940_3455126_-	pfam06085, Rz1, Lipoprotein Rz1 precursor	NA|166aa|up_8|NZ_CP029981.1_3455342_3455840_-	cd16900, endolysin_R21-like, endolysin R21-like proteins	NA|72aa|up_7|NZ_CP029981.1_3455839_3456055_-	pfam04971, Phage_holin_2_1, Bacteriophage P21 holin S	NA|244aa|up_6|NZ_CP029981.1_3456242_3456974_-	PRK09940, PRK09940, transcriptional regulator YdeO; Provisional	NA|320aa|up_5|NZ_CP029981.1_3457325_3458285_-	COG3272, COG3272, Uncharacterized conserved protein [Function unknown]	NA|143aa|up_4|NZ_CP029981.1_3459667_3460096_+	pfam10711, DUF2513, Hypothetical protein (DUF2513)	NA|56aa|up_3|NZ_CP029981.1_3460179_3460347_+	NA	NA|73aa|up_2|NZ_CP029981.1_3460386_3460605_+	pfam07825, Exc, Excisionase-like protein	NA|357aa|up_1|NZ_CP029981.1_3460582_3461653_+	cd00800, INT_Lambda_C, C-terminal catalytic domain of Lambda integrase, a tyrosine-based site-specific recombinase	NA|428aa|up_0|NZ_CP029981.1_3461787_3463071_+	PRK10531, PRK10531, putative acyl-CoA thioester hydrolase	NA|754aa|down_0|NZ_CP029981.1_3463304_3465566_-	PRK11413, PRK11413, putative hydratase; Provisional	NA|478aa|down_1|NZ_CP029981.1_3465748_3467182_-	pfam00939, Na_sulph_symp, Sodium:sulfate symporter transmembrane region	NA|351aa|down_2|NZ_CP029981.1_3467257_3468310_-	NF033377, OMA_tautomer, 4-oxalomesaconate tautomerase	NA|318aa|down_3|NZ_CP029981.1_3468493_3469447_+	cd08440, PBP2_LTTR_like_4, TThe C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold	NA|332aa|down_4|NZ_CP029981.1_3469487_3470483_-	PRK11028, PRK11028, 6-phosphogluconolactonase; Provisional	NA|273aa|down_5|NZ_CP029981.1_3470637_3471456_+	PRK10530, PRK10530, pyridoxal phosphate (PLP) phosphatase; Provisional	NA|353aa|down_6|NZ_CP029981.1_3471456_3472515_-	PRK11144, modC, molybdenum ABC transporter ATP-binding protein ModC	NA|230aa|down_7|NZ_CP029981.1_3472517_3473207_-	PRK09421, modB, molybdate ABC transporter permease subunit	NA|258aa|down_8|NZ_CP029981.1_3473206_3473980_-	PRK10677, modA, molybdate transporter periplasmic protein; Provisional	NA|50aa|down_9|NZ_CP029981.1_3474146_3474296_-	pfam10766, AcrZ, Multidrug efflux pump-associated protein AcrZ
GCF_003290205.1_ASM329020v1	NZ_CP029981	Escherichia coli strain 99-3165 chromosome, complete genome	8	3711505-3711601	7	CRISPRCasFinder	no		c2c9_V-U4,RT,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas1,cas2,DEDDh,WYL,DinG	Orphan	TTGTAGGCCTGATAAGATGCGTCAAGC	27	0	0	NA	NA	NA	1	1	Orphan	c2c9_V-U4,RT,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas1,cas2,DEDDh,WYL,DinG	NA,NA	NA|388aa|up_9|NZ_CP029981.1_3701036_3702200_+	cd00796, INT_Rci_Hp1_C, Shufflon-specific DNA recombinase Rci and Bacteriophage Hp1_like integrase, C-terminal catalytic domain	NA|339aa|up_8|NZ_CP029981.1_3703078_3704095_-	COG3039, COG3039, Transposase and inactivated derivatives, IS5 family [DNA replication, recombination, and repair]	NA|289aa|up_7|NZ_CP029981.1_3705225_3706092_+	PRK10792, PRK10792, bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA|71aa|up_6|NZ_CP029981.1_3706093_3706306_+	PRK11507, PRK11507, ribosome-associated protein YbcJ	NA|174aa|up_5|NZ_CP029981.1_3706413_3706935_+	COG1988, COG1988, Predicted membrane-bound metal-dependent hydrolases [General function prediction only]	NA|462aa|up_4|NZ_CP029981.1_3706970_3708356_-	PRK00260, cysS, cysteinyl-tRNA synthetase; Validated	NA|165aa|up_3|NZ_CP029981.1_3708529_3709024_+	PRK10791, PRK10791, peptidylprolyl isomerase B	NA|241aa|up_2|NZ_CP029981.1_3709026_3709749_+	PRK05340, PRK05340, UDP-2,3-diacylglucosamine hydrolase; Provisional	NA|170aa|up_1|NZ_CP029981.1_3709866_3710376_+	COG0041, PurE, Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]	NA|356aa|up_0|NZ_CP029981.1_3710372_3711440_+	PRK06019, PRK06019, phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed	NA|298aa|down_0|NZ_CP029981.1_3711634_3712528_-	PRK09411, PRK09411, carbamate kinase; Reviewed	NA|272aa|down_1|NZ_CP029981.1_3712524_3713340_-	pfam11392, DUF2877, Protein of unknown function (DUF2877)	NA|420aa|down_2|NZ_CP029981.1_3713350_3714610_-	pfam06545, DUF1116, Protein of unknown function (DUF1116)	NA|272aa|down_3|NZ_CP029981.1_3718603_3719419_-	PRK10163, PRK10163, HTH-type transcriptional repressor AllR	NA|161aa|down_4|NZ_CP029981.1_3719496_3719979_-	COG3194, DAL3, Ureidoglycolate hydrolase [Nucleotide transport and metabolism]	NA|309aa|down_5|NZ_CP029981.1_3720208_3721135_+	PRK10094, PRK10094, HTH-type transcriptional activator AllS	NA|365aa|down_6|NZ_CP029981.1_3721203_3722298_+	COG2603, COG2603, Predicted ATPase [General function prediction only]	NA|123aa|down_7|NZ_CP029981.1_3725258_3725627_-	pfam15631, Imm-NTF2-2, NTF2 fold immunity protein	NA|805aa|down_8|NZ_CP029981.1_3731153_3733568_-	COG3127, COG3127, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, permease component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|229aa|down_9|NZ_CP029981.1_3733564_3734251_-	PRK10584, PRK10584, putative ABC transporter ATP-binding protein YbbA; Provisional
GCF_003290205.1_ASM329020v1	NZ_CP029981	Escherichia coli strain 99-3165 chromosome, complete genome	9	3842764-3842908	8	CRISPRCasFinder	no		c2c9_V-U4,RT,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas1,cas2,DEDDh,WYL,DinG	Orphan	TTTTGCAGGCCTGATAAGACGCGGCAAGCGTCGCATCAGGCAT	43	0	0	NA	NA	NA	1	1	Orphan	c2c9_V-U4,RT,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas1,cas2,DEDDh,WYL,DinG	NA,NA|28aa|down_2|NZ_CP029981.1_3844953_3845037_-	NA|357aa|up_9|NZ_CP029981.1_3827902_3828973_-	PRK00147, queA, S-adenosylmethionine:tRNA ribosyltransferase-isomerase; Provisional	NA|194aa|up_8|NZ_CP029981.1_3829065_3829647_+	PRK10045, PRK10045, ACP phosphodiesterase	NA|606aa|up_7|NZ_CP029981.1_3829651_3831469_-	PRK10785, PRK10785, maltodextrin glucosidase; Provisional	NA|458aa|up_6|NZ_CP029981.1_3831624_3832998_-	PRK10580, proY, putative proline-specific permease; Provisional	NA|440aa|up_5|NZ_CP029981.1_3833073_3834393_-	PRK15433, PRK15433, branched-chain amino acid transporter carrier protein BrnQ	NA|432aa|up_4|NZ_CP029981.1_3834799_3836095_-	PRK11006, phoR, phosphate regulon sensor histidine kinase PhoR	NA|230aa|up_3|NZ_CP029981.1_3836152_3836842_-	PRK10161, PRK10161, phosphate response regulator transcription factor PhoB	NA|401aa|up_2|NZ_CP029981.1_3837031_3838234_+	PRK10966, PRK10966, exonuclease subunit SbcD; Provisional	NA|1049aa|up_1|NZ_CP029981.1_3838230_3841377_+	PRK10246, PRK10246, exonuclease subunit SbcC; Provisional	NA|395aa|up_0|NZ_CP029981.1_3841502_3842687_+	PRK10091, PRK10091, MFS transport protein AraJ; Provisional	NA|303aa|down_0|NZ_CP029981.1_3842931_3843840_-	PRK09557, PRK09557, fructokinase; Reviewed	NA|304aa|down_1|NZ_CP029981.1_3843964_3844876_+	COG2974, RdgC, DNA recombination-dependent growth factor C [DNA replication, recombination, and repair]	NA|28aa|down_2|NZ_CP029981.1_3844953_3845037_-	NA	NA|95aa|down_3|NZ_CP029981.1_3845522_3845807_-	PRK10579, PRK10579, pyrimidine/purine nucleoside phosphorylase	NA|226aa|down_4|NZ_CP029981.1_3845878_3846556_-	PRK10481, PRK10481, hypothetical protein; Provisional	NA|64aa|down_5|NZ_CP029981.1_3846813_3847005_-	PRK10380, PRK10380, hypothetical protein; Provisional	NA|175aa|down_6|NZ_CP029981.1_3847054_3847579_-	PRK03731, aroL, shikimate kinase AroL	NA|155aa|down_7|NZ_CP029981.1_3847755_3848220_-	PRK00124, PRK00124, YaiI/YqxD family protein	NA|270aa|down_8|NZ_CP029981.1_3848339_3849149_+	PRK11880, PRK11880, pyrroline-5-carboxylate reductase; Reviewed	NA|372aa|down_9|NZ_CP029981.1_3849165_3850281_-	PRK10245, adrA, diguanylate cyclase AdrA; Provisional
GCF_003290205.1_ASM329020v1	NZ_CP029981	Escherichia coli strain 99-3165 chromosome, complete genome	10	3876098-3876241	9	CRISPRCasFinder	no		c2c9_V-U4,RT,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas1,cas2,DEDDh,WYL,DinG	Orphan	ACGCCGCATCCGGCAGTCGTGTGCAGATGCCTGATGCGACGCT	43	0	0	NA	NA	NA	1	1	Orphan	c2c9_V-U4,RT,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas1,cas2,DEDDh,WYL,DinG	NA,NA	NA|321aa|up_9|NZ_CP029981.1_3866584_3867547_-	PRK11480, tauA, taurine transporter substrate binding subunit; Provisional	NA|224aa|up_8|NZ_CP029981.1_3868162_3868834_+	COG2120, COG2120, Uncharacterized proteins, LmbE homologs [Function unknown]	NA|399aa|up_7|NZ_CP029981.1_3868843_3870040_+	COG1215, COG1215, Glycosyltransferases, probably involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]	NA|194aa|up_6|NZ_CP029981.1_3870017_3870599_+	cd05636, LbH_G1P_TT_C_like, Putative glucose-1-phosphate thymidylyltransferase, C-terminal Left-handed parallel beta-Helix (LbH) domain: Proteins in this family show simlarity to glucose-1-phosphate adenylyltransferases in that they contain N-terminal catalytic domains that resemble a dinucleotide-binding Rossmann fold and C-terminal LbH fold domains	NA|258aa|up_5|NZ_CP029981.1_3870600_3871374_+	TIGR04390, hypothetical_protein, outer membrane protein, YaiO family	NA|92aa|up_4|NZ_CP029981.1_3871560_3871836_+	PRK11352, PRK11352, formaldehyde-responsive transcriptional repressor FrmR	NA|370aa|up_3|NZ_CP029981.1_3871870_3872980_+	cd08300, alcohol_DH_class_III, class III alcohol dehydrogenases	NA|278aa|up_2|NZ_CP029981.1_3873072_3873906_+	TIGR02821, S-formylglutathione_hydrolase, S-formylglutathione hydrolase	NA|180aa|up_1|NZ_CP029981.1_3874131_3874671_-	COG3122, COG3122, Uncharacterized protein conserved in bacteria [Function unknown]	NA|404aa|up_0|NZ_CP029981.1_3874772_3875984_-	PRK11551, PRK11551, putative 3-hydroxyphenylpropionic transporter MhpT; Provisional	NA|338aa|down_0|NZ_CP029981.1_3876361_3877375_-	PRK08195, PRK08195, 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated	NA|317aa|down_1|NZ_CP029981.1_3877371_3878322_-	PRK08300, PRK08300, acetaldehyde dehydrogenase; Validated	NA|270aa|down_2|NZ_CP029981.1_3878318_3879128_-	PRK11342, mhpD, 2-keto-4-pentenoate hydratase; Provisional	NA|289aa|down_3|NZ_CP029981.1_3879137_3880004_-	TIGR03343, 2-hydroxy-6-oxo-6-phenylhexa-24-dienoate_hydrolase, 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase	NA|315aa|down_4|NZ_CP029981.1_3880021_3880966_-	cd07365, MhpB_like, Subunit B of the Class III Extradiol ring-cleavage dioxygenase, 2,3-dihydroxyphenylpropionate 1,2-dioxygenase (MhpB), which catalyzes the oxidization and subsequent ring-opening of 2,3-dihydroxyphenylpropionate	NA|555aa|down_5|NZ_CP029981.1_3880967_3882632_-	PRK06183, mhpA, bifunctional 3-(3-hydroxy-phenyl)propionate/3-hydroxycinnamic acid hydroxylase	NA|316aa|down_6|NZ_CP029981.1_3882708_3883656_+	PRK09834, PRK09834, DNA-binding transcriptional regulator	NA|361aa|down_7|NZ_CP029981.1_3883732_3884815_+	PRK09526, lacI, lac repressor; Reviewed	NA|1025aa|down_8|NZ_CP029981.1_3884937_3888012_+	PRK09525, lacZ, beta-galactosidase	NA|418aa|down_9|NZ_CP029981.1_3888063_3889317_+	PRK09528, lacY, galactoside permease; Reviewed
GCF_003290205.1_ASM329020v1	NZ_CP029981	Escherichia coli strain 99-3165 chromosome, complete genome	11	4186549-4186681	4	PILER-CR	no		c2c9_V-U4,RT,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas1,cas2,DEDDh,WYL,DinG	Orphan	ATCACCAATATTGAAAA	17	0	0	NA	NA	NA	2	2	Orphan	c2c9_V-U4,RT,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas1,cas2,DEDDh,WYL,DinG	NA|156aa|up_9|NZ_CP029981.1_4177790_4178258_+,NA	NA|156aa|up_9|NZ_CP029981.1_4177790_4178258_+	NA	NA|60aa|up_8|NZ_CP029981.1_4178356_4178536_-	pfam07362, CcdA, Post-segregation antitoxin CcdA	NA|160aa|up_7|NZ_CP029981.1_4178556_4179036_-	PRK10769, folA, type 3 dihydrofolate reductase	NA|621aa|up_6|NZ_CP029981.1_4179227_4181090_-	PRK03562, PRK03562, glutathione-regulated potassium-efflux system protein KefC; Provisional	NA|177aa|up_5|NZ_CP029981.1_4181082_4181613_-	PRK00871, PRK00871, glutathione-regulated potassium-efflux system oxidoreductase KefF	NA|444aa|up_4|NZ_CP029981.1_4181720_4183052_-	cd17316, MFS_SV2_like, Metazoan Synaptic vesicle glycoprotein 2 (SV2) and related small molecule transporters of the Major Facilitator Superfamily	NA|96aa|up_3|NZ_CP029981.1_4183110_4183398_-	PRK15449, PRK15449, ferredoxin-like protein FixX; Provisional	NA|429aa|up_2|NZ_CP029981.1_4183394_4184681_-	PRK10157, PRK10157, putative oxidoreductase FixC; Provisional	NA|314aa|up_1|NZ_CP029981.1_4184731_4185673_-	PRK03363, fixB, electron transfer flavoprotein subunit alpha/FixB family protein	NA|257aa|up_0|NZ_CP029981.1_4185687_4186458_-	PRK03359, PRK03359, putative electron transfer flavoprotein FixA; Reviewed	NA|505aa|down_0|NZ_CP029981.1_4186931_4188446_+	PRK03356, PRK03356, L-carnitine/gamma-butyrobetaine antiport BCCT transporter	NA|381aa|down_1|NZ_CP029981.1_4188476_4189619_+	PRK03354, PRK03354, crotonobetainyl-CoA dehydrogenase; Validated	NA|406aa|down_2|NZ_CP029981.1_4189758_4190976_+	PRK03525, PRK03525, L-carnitine CoA-transferase	NA|518aa|down_3|NZ_CP029981.1_4191049_4192603_+	PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated	NA|262aa|down_4|NZ_CP029981.1_4192711_4193497_+	PRK03580, PRK03580, crotonobetainyl-CoA hydratase	NA|197aa|down_5|NZ_CP029981.1_4193502_4194093_+	PRK13627, PRK13627, carnitine operon protein CaiE; Provisional	NA|132aa|down_6|NZ_CP029981.1_4194178_4194574_-	PRK11476, PRK11476, carnitine metabolism transcriptional regulator CaiF	NA|1074aa|down_7|NZ_CP029981.1_4194833_4198055_-	PRK05294, carB, carbamoyl-phosphate synthase large subunit	NA|383aa|down_8|NZ_CP029981.1_4198072_4199221_-	PRK12564, PRK12564, carbamoyl-phosphate synthase small subunit	NA|274aa|down_9|NZ_CP029981.1_4199676_4200498_-	COG0289, DapB, Dihydrodipicolinate reductase [Amino acid transport and metabolism]
