assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_003288175.1_ASM328817v1	NZ_CP025419	Streptococcus suis strain SH0104 chromosome, complete genome	1	1236391-1236474	1	CRISPRCasFinder	no		cas3,DinG,csn2,cas2,cas1,cas9,csa3,DEDDh	Orphan	GGAGGTTGGAAATTGAGCGAACGAAGTT	28	0	0	NA	NA	NA	1	1	Orphan	cas3,DinG,csn2,cas2,cas1,cas9,csa3,DEDDh	NA|252aa|up_6|NZ_CP025419.1_1230121_1230877_+,NA|181aa|up_3|NZ_CP025419.1_1232502_1233045_-,NA|157aa|up_2|NZ_CP025419.1_1233064_1233535_-,NA	NA|172aa|up_9|NZ_CP025419.1_1227905_1228421_-	PRK08622, PRK08622, galactose-6-phosphate isomerase subunit LacB; Reviewed	NA|141aa|up_8|NZ_CP025419.1_1228447_1228870_-	PRK08621, PRK08621, galactose-6-phosphate isomerase subunit LacA; Reviewed	NA|256aa|up_7|NZ_CP025419.1_1229075_1229843_-	COG1349, GlpR, Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism]	NA|252aa|up_6|NZ_CP025419.1_1230121_1230877_+	NA	NA|63aa|up_5|NZ_CP025419.1_1230965_1231154_+	pfam12728, HTH_17, Helix-turn-helix domain	NA|344aa|up_4|NZ_CP025419.1_1231245_1232277_+	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|181aa|up_3|NZ_CP025419.1_1232502_1233045_-	NA	NA|157aa|up_2|NZ_CP025419.1_1233064_1233535_-	NA	NA|267aa|up_1|NZ_CP025419.1_1233666_1234467_+	COG2932, COG2932, Predicted transcriptional regulator [Transcription]	NA|387aa|up_0|NZ_CP025419.1_1235129_1236290_-	COG1194, MutY, A/G-specific DNA glycosylase [DNA replication, recombination, and repair]	NA|129aa|down_0|NZ_CP025419.1_1236524_1236911_-	COG2050, PaaI, HGG motif-containing thioesterase, possibly involved in aromatic compounds catabolism [Secondary metabolites biosynthesis,    transport, and catabolism]	NA|581aa|down_1|NZ_CP025419.1_1236900_1238643_-	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|579aa|down_2|NZ_CP025419.1_1238629_1240366_-	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|325aa|down_3|NZ_CP025419.1_1240367_1241342_-	PRK09653, eutD, phosphotransacetylase	NA|298aa|down_4|NZ_CP025419.1_1241359_1242253_-	COG0564, RluA, Pseudouridylate synthases, 23S RNA-specific [Translation, ribosomal structure and biogenesis]	NA|276aa|down_5|NZ_CP025419.1_1242252_1243080_-	PRK04885, ppnK, inorganic polyphosphate/ATP-NAD kinase; Provisional	NA|224aa|down_6|NZ_CP025419.1_1243054_1243726_-	COG2357, COG2357, PpGpp synthetase catalytic domain [General function prediction only]	NA|189aa|down_7|NZ_CP025419.1_1243812_1244379_+	cd07762, CYTH-like_Pase_1, Uncharacterized subgroup 1 of the CYTH-like superfamily	NA|326aa|down_8|NZ_CP025419.1_1244523_1245501_+	PRK02458, PRK02458, ribose-phosphate pyrophosphokinase; Provisional	NA|372aa|down_9|NZ_CP025419.1_1245511_1246627_+	COG1104, NifS, Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]
GCF_003288175.1_ASM328817v1	NZ_CP025419	Streptococcus suis strain SH0104 chromosome, complete genome	2	1493907-1494599	2,1,1	CRISPRCasFinder,CRT,PILER-CR	no	csn2,cas2,cas1,cas9	cas3,DinG,csn2,cas2,cas1,cas9,csa3,DEDDh	Type II-B,Type II-A,Type II-C	GTTTTACTGTTACTTAAATCTTGAGAGTACAAAAAC,GTTTTACTGTTACTTAAATCTTGAGAGTACAAAAAC,GTTTTACTGTTACTTAAATCTTGAGAGTACAAAAAC	36,36,36	2	2	1494470-1494498|1494535-1494563	NZ_CP025419.1_1054697-1054725|NZ_CP025419.1_1054697-1054725	NA:NA:NA	10,10,9	10	TypeII-B,TypeII-A,TypeII-C	cas3,DinG,csn2,cas2,cas1,cas9,csa3,DEDDh	NA,NA|103aa|down_5|NZ_CP025419.1_1503837_1504146_-	NA|206aa|up_9|NZ_CP025419.1_1483713_1484331_-	cd04672, Nudix_Hydrolase_14, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	NA|247aa|up_8|NZ_CP025419.1_1484317_1485058_-	pfam01643, Acyl-ACP_TE, Acyl-ACP thioesterase	NA|376aa|up_7|NZ_CP025419.1_1485288_1486416_-	PRK08599, PRK08599, oxygen-independent coproporphyrinogen III oxidase	NA|193aa|up_6|NZ_CP025419.1_1486510_1487089_+	pfam04892, VanZ, VanZ like family	NA|756aa|up_5|NZ_CP025419.1_1487223_1489491_-	cd04300, GT35_Glycogen_Phosphorylase, glycogen phosphorylase and similar proteins	NA|238aa|up_4|NZ_CP025419.1_1489667_1490381_-	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase	NA|270aa|up_3|NZ_CP025419.1_1490413_1491223_-	PRK08202, PRK08202, purine nucleoside phosphorylase; Provisional	NA|119aa|up_2|NZ_CP025419.1_1491234_1491591_-	cd03034, ArsC_ArsC, Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli	NA|404aa|up_1|NZ_CP025419.1_1491590_1492802_-	PRK05362, PRK05362, phosphopentomutase; Provisional	NA|225aa|up_0|NZ_CP025419.1_1493130_1493805_-	PRK00702, PRK00702, ribose-5-phosphate isomerase RpiA	csn2|349aa|down_0|NZ_CP025419.1_1494659_1495706_-	cd12217, Stu0660_Csn2, Stu0660-like CRISPR/Cas system-associated protein Csn2	cas2|108aa|down_1|NZ_CP025419.1_1495702_1496026_-	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	cas1|305aa|down_2|NZ_CP025419.1_1496022_1496937_-	TIGR03639, cas1_NMENI, CRISPR-associated endonuclease Cas1, subtype II/NMENI	cas9|1123aa|down_3|NZ_CP025419.1_1497103_1500472_-	TIGR01865, conserved_hypothetical_protein, CRISPR subtype II/NMENI RNA-guided endonuclease Cas9/Csn1	NA|458aa|down_4|NZ_CP025419.1_1501155_1502529_+	PRK05291, trmE, tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE	NA|103aa|down_5|NZ_CP025419.1_1503837_1504146_-	NA	NA|488aa|down_6|NZ_CP025419.1_1504234_1505698_-	cd03399, SPFH_flotillin, Flotillin or reggie family; SPFH (stomatin, prohibitin, flotillin, and HflK/C) superfamily	NA|194aa|down_7|NZ_CP025419.1_1505709_1506291_-	pfam04011, LemA, LemA family	NA|261aa|down_8|NZ_CP025419.1_1506363_1507146_-	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|193aa|down_9|NZ_CP025419.1_1507217_1507796_-	cd10033, UDG_like, uncharacterized family of the uracil-DNA glycosylase superfamily
