assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_003287125.1_ASM328712v1	NZ_CP019610	Mycobacterium tuberculosis strain H54 chromosome, complete genome	1	387691-387832	1	CRISPRCasFinder	no		DEDDh,cas4,WYL,csa3,DinG,cas3,c2c9_V-U4,cas6,cas10,csm2gr11,csm3gr7	Orphan	TGAGTATTCCGTCGGTGACGGTTCCGCCGATCACGATTCCGGCTGGCAC	49	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas4,WYL,csa3,DinG,cas3,c2c9_V-U4,cas6,cas10,csm2gr11,csm3gr7	NA|127aa|up_5|NZ_CP019610.1_379793_380174_+,NA|136aa|down_2|NZ_CP019610.1_398891_399299_+	NA|256aa|up_9|NZ_CP019610.1_375506_376274_+	PRK05867, PRK05867, SDR family oxidoreductase	NA|258aa|up_8|NZ_CP019610.1_376277_377051_-	COG3361, COG3361, Uncharacterized conserved protein [Function unknown]	NA|160aa|up_7|NZ_CP019610.1_377287_377767_+	pfam09167, DUF1942, Domain of unknown function (DUF1942)	NA|621aa|up_6|NZ_CP019610.1_377774_379637_-	PRK12476, PRK12476, putative fatty-acid--CoA ligase; Provisional	NA|127aa|up_5|NZ_CP019610.1_379793_380174_+	NA	NA|447aa|up_4|NZ_CP019610.1_380210_381551_-	pfam00144, Beta-lactamase, Beta-lactamase	NA|372aa|up_3|NZ_CP019610.1_381541_382657_-	COG1680, AmpC, Beta-lactamase class C and other penicillin binding proteins [Defense mechanisms]	NA|424aa|up_2|NZ_CP019610.1_382928_384200_+	TIGR01490, Uncharacterized_protein_Rv3661/MT3761, HAD-superfamily subfamily IB hydrolase, TIGR01490	NA|288aa|up_1|NZ_CP019610.1_384237_385101_-	cd07987, LPLAT_MGAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: MGAT-like	NA|155aa|up_0|NZ_CP019610.1_385198_385663_+	cd07821, PYR_PYL_RCAR_like, Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins	NA|421aa|down_0|NZ_CP019610.1_391071_392333_+	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|767aa|down_1|NZ_CP019610.1_396456_398757_-	PLN02892, PLN02892, isocitrate lyase	NA|136aa|down_2|NZ_CP019610.1_398891_399299_+	NA	NA|251aa|down_3|NZ_CP019610.1_399276_400029_-	cd16282, metallo-hydrolase-like_MBL-fold, uncharacterized subgroup of the MBL-fold_metallo-hydrolase superfamily; MBL-fold metallo hydrolase domain	NA|335aa|down_4|NZ_CP019610.1_400128_401133_+	cd08275, MDR3, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family	NA|202aa|down_5|NZ_CP019610.1_401232_401838_+	COG1881, COG1881, Phospholipid-binding protein [General function prediction only]	NA|198aa|down_6|NZ_CP019610.1_401920_402514_+	COG1881, COG1881, Phospholipid-binding protein [General function prediction only]	NA|148aa|down_7|NZ_CP019610.1_402627_403071_+	COG0735, Fur, Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]	NA|741aa|down_8|NZ_CP019610.1_403108_405331_+	PRK15061, PRK15061, catalase/peroxidase	NA|155aa|down_9|NZ_CP019610.1_405506_405971_+	pfam14081, DUF4262, Domain of unknown function (DUF4262)
GCF_003287125.1_ASM328712v1	NZ_CP019610	Mycobacterium tuberculosis strain H54 chromosome, complete genome	2	496961-497956	1	CRT	no		DEDDh,cas4,WYL,csa3,DinG,cas3,c2c9_V-U4,cas6,cas10,csm2gr11,csm3gr7	Orphan	GNCGGCGGGGCCGGCGGC	18	2	6	497102-497122|497102-497122|497102-497122|497102-497122|497201-497221|497201-497221	NZ_CP019610.1_188365-188385|NZ_CP019610.1_1051968-1051988|NZ_CP019610.1_1052127-1052147|NZ_CP019610.1_1383025-1383045|NZ_CP019610.1_1453541-1453521|NZ_CP019610.1_3154831-3154811	NA	16	16	Orphan	DEDDh,cas4,WYL,csa3,DinG,cas3,c2c9_V-U4,cas6,cas10,csm2gr11,csm3gr7	NA,NA|222aa|down_2|NZ_CP019610.1_501030_501696_-	NA|248aa|up_9|NZ_CP019610.1_485390_486134_-	cd00592, HTH_MerR-like, Helix-Turn-Helix DNA binding domain of MerR-like transcription regulators	NA|163aa|up_8|NZ_CP019610.1_486130_486619_-	COG1716, COG1716, FOG: FHA domain [Signal transduction mechanisms]	NA|135aa|up_7|NZ_CP019610.1_486858_487263_-	PRK01202, PRK01202, glycine cleavage system protein GcvH	NA|293aa|up_6|NZ_CP019610.1_487300_488179_-	COG3879, COG3879, Uncharacterized protein conserved in bacteria [Function unknown]	NA|122aa|up_5|NZ_CP019610.1_488195_488561_-	COG3856, Sbp, Uncharacterized conserved protein (small basic protein) [Function unknown]	NA|308aa|up_4|NZ_CP019610.1_488589_489513_-	COG3879, COG3879, Uncharacterized protein conserved in bacteria [Function unknown]	NA|210aa|up_3|NZ_CP019610.1_489505_490135_-	COG0558, PgsA, Phosphatidylglycerophosphate synthase [Lipid metabolism]	NA|809aa|up_2|NZ_CP019610.1_490331_492758_-	PRK12326, PRK12326, preprotein translocase subunit SecA; Reviewed	NA|548aa|up_1|NZ_CP019610.1_492772_494416_-	PRK05858, PRK05858, acetolactate synthase	NA|640aa|up_0|NZ_CP019610.1_494486_496406_+	COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]	NA|488aa|down_0|NZ_CP019610.1_498165_499629_-	PRK07121, PRK07121, FAD-binding protein	NA|235aa|down_1|NZ_CP019610.1_500263_500968_-	pfam13305, WHG, WHG domain	NA|222aa|down_2|NZ_CP019610.1_501030_501696_-	NA	NA|301aa|down_3|NZ_CP019610.1_501800_502703_-	COG3000, ERG3, Sterol desaturase [Lipid metabolism]	NA|144aa|down_4|NZ_CP019610.1_503111_503543_+	pfam13827, DUF4189, Domain of unknown function (DUF4189)	NA|401aa|down_5|NZ_CP019610.1_503864_505067_+	COG1252, Ndh, NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]	NA|235aa|down_6|NZ_CP019610.1_505076_505781_-	COG1285, SapB, Uncharacterized membrane protein [Function unknown]	NA|119aa|down_7|NZ_CP019610.1_505934_506291_-	pfam05305, DUF732, Protein of unknown function (DUF732)	NA|469aa|down_8|NZ_CP019610.1_506535_507942_-	pfam00823, PPE, PPE family	NA|410aa|down_9|NZ_CP019610.1_508073_509303_-	pfam00823, PPE, PPE family
GCF_003287125.1_ASM328712v1	NZ_CP019610	Mycobacterium tuberculosis strain H54 chromosome, complete genome	3	907807-908646	2	CRT	no		DEDDh,cas4,WYL,csa3,DinG,cas3,c2c9_V-U4,cas6,cas10,csm2gr11,csm3gr7	Orphan	GNCGGCGGNANCGGCGGC	18	1	1	907825-907851	NZ_CP019610.1_904049-904075	NA	14	14	Orphan	DEDDh,cas4,WYL,csa3,DinG,cas3,c2c9_V-U4,cas6,cas10,csm2gr11,csm3gr7	NA|288aa|up_4|NZ_CP019610.1_899588_900452_-,NA|137aa|down_5|NZ_CP019610.1_917832_918243_+,NA|38aa|down_6|NZ_CP019610.1_918292_918406_+	NA|269aa|up_9|NZ_CP019610.1_894086_894893_-	COG2345, COG2345, Predicted transcriptional regulator [Transcription]	NA|592aa|up_8|NZ_CP019610.1_894940_896716_+	TIGR03459, crt_membr, carotene biosynthesis associated membrane protein	NA|314aa|up_7|NZ_CP019610.1_896871_897813_+	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|262aa|up_6|NZ_CP019610.1_897809_898595_+	TIGR00025, Mtu_efflux, ABC transporter efflux protein, DrrB family	NA|311aa|up_5|NZ_CP019610.1_898706_899639_+	COG1612, CtaA, Uncharacterized protein required for cytochrome oxidase assembly [Posttranslational modification, protein turnover, chaperones]	NA|288aa|up_4|NZ_CP019610.1_899588_900452_-	NA	NA|329aa|up_3|NZ_CP019610.1_900471_901458_+	cd05286, QOR2, Quinone oxidoreductase (QOR)	NA|422aa|up_2|NZ_CP019610.1_901485_902751_-	COG2508, COG2508, Regulator of polyketide synthase expression [Signal transduction mechanisms / Secondary metabolites biosynthesis, transport, and catabolism]	NA|802aa|up_1|NZ_CP019610.1_902902_905308_+	pfam00934, PE, PE family	NA|309aa|up_0|NZ_CP019610.1_905356_906283_-	PRK04375, PRK04375, protoheme IX farnesyltransferase; Provisional	NA|701aa|down_0|NZ_CP019610.1_911327_913430_+	COG0021, TktA, Transketolase [Carbohydrate transport and metabolism]	NA|374aa|down_1|NZ_CP019610.1_913446_914568_+	PRK03343, PRK03343, transaldolase; Validated	NA|515aa|down_2|NZ_CP019610.1_914564_916109_+	PRK05722, PRK05722, glucose-6-phosphate 1-dehydrogenase; Validated	NA|305aa|down_3|NZ_CP019610.1_916161_917076_+	TIGR00534, Putative_OxPP_cycle_protein_OpcA, glucose-6-phosphate dehydrogenase assembly protein OpcA	NA|248aa|down_4|NZ_CP019610.1_917072_917816_+	pfam01182, Glucosamine_iso, Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase	NA|137aa|down_5|NZ_CP019610.1_917832_918243_+	NA	NA|38aa|down_6|NZ_CP019610.1_918292_918406_+	NA	NA|162aa|down_7|NZ_CP019610.1_918837_919323_+	cd07820, SRPBCC_3, Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins	NA|767aa|down_8|NZ_CP019610.1_919438_921739_-	TIGR00509, Trimethylamine-N-oxide_reductase_1, molybdopterin guanine dinucleotide-containing S/N-oxide reductases	NA|486aa|down_9|NZ_CP019610.1_921845_923303_+	pfam00934, PE, PE family
GCF_003287125.1_ASM328712v1	NZ_CP019610	Mycobacterium tuberculosis strain H54 chromosome, complete genome	4	1706137-1707108	3	CRT	no		DEDDh,cas4,WYL,csa3,DinG,cas3,c2c9_V-U4,cas6,cas10,csm2gr11,csm3gr7	Orphan	NNNCCGCCGGCNCCGCCG	18	1	2	1706893-1706913|1706893-1706913	NZ_CP019610.1_990458-990438|NZ_CP019610.1_3154536-3154556	NA	17	17	Orphan	DEDDh,cas4,WYL,csa3,DinG,cas3,c2c9_V-U4,cas6,cas10,csm2gr11,csm3gr7	NA|82aa|up_4|NZ_CP019610.1_1701969_1702215_-,NA|46aa|up_3|NZ_CP019610.1_1702373_1702511_+,NA|186aa|down_3|NZ_CP019610.1_1709675_1710233_+,NA|176aa|down_5|NZ_CP019610.1_1711815_1712343_-,NA|71aa|down_8|NZ_CP019610.1_1714207_1714420_-	NA|646aa|up_9|NZ_CP019610.1_1694207_1696145_+	pfam00823, PPE, PPE family	NA|585aa|up_8|NZ_CP019610.1_1696334_1698089_-	pfam00934, PE, PE family	NA|511aa|up_7|NZ_CP019610.1_1698294_1699827_+	cd07085, ALDH_F6_MMSDH, Methylmalonate semialdehyde dehydrogenase and ALDH family members 6A1 and 6B2	NA|391aa|up_6|NZ_CP019610.1_1699833_1701006_+	cd01162, IBD, Isobutyryl-CoA dehydrogenase	NA|295aa|up_5|NZ_CP019610.1_1701016_1701901_+	TIGR01692, 3-hydroxyisobutyrate_dehydrogenase_mitochondrial, 3-hydroxyisobutyrate dehydrogenase	NA|82aa|up_4|NZ_CP019610.1_1701969_1702215_-	NA	NA|46aa|up_3|NZ_CP019610.1_1702373_1702511_+	NA	NA|143aa|up_2|NZ_CP019610.1_1702591_1703020_-	cd18678, PIN_MtVapC25_VapC33-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC25, VapC33, and related proteins	NA|86aa|up_1|NZ_CP019610.1_1703043_1703301_-	pfam01402, RHH_1, Ribbon-helix-helix protein, copG family	NA|758aa|up_0|NZ_CP019610.1_1703391_1705665_-	pfam00934, PE, PE family	NA|176aa|down_0|NZ_CP019610.1_1708437_1708965_-	TIGR03817, DECH_helic, helicase/secretion neighborhood putative DEAH-box helicase	NA|49aa|down_1|NZ_CP019610.1_1708913_1709060_+	TIGR01692, 3-hydroxyisobutyrate_dehydrogenase_mitochondrial, 3-hydroxyisobutyrate dehydrogenase	NA|169aa|down_2|NZ_CP019610.1_1709172_1709679_+	pfam12728, HTH_17, Helix-turn-helix domain	NA|186aa|down_3|NZ_CP019610.1_1709675_1710233_+	NA	NA|176aa|down_4|NZ_CP019610.1_1710610_1711138_-	pfam00934, PE, PE family	NA|176aa|down_5|NZ_CP019610.1_1711815_1712343_-	NA	NA|283aa|down_6|NZ_CP019610.1_1712457_1713306_-	pfam10774, DUF4226, Domain of unknown function (DUF4226)	NA|183aa|down_7|NZ_CP019610.1_1713510_1714059_-	TIGR03086, TIGR03086, TIGR03086 family protein	NA|71aa|down_8|NZ_CP019610.1_1714207_1714420_-	NA	NA|166aa|down_9|NZ_CP019610.1_1714416_1714914_-	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein
GCF_003287125.1_ASM328712v1	NZ_CP019610	Mycobacterium tuberculosis strain H54 chromosome, complete genome	5	1852554-1852630	2	CRISPRCasFinder	no	c2c9_V-U4	DEDDh,cas4,WYL,csa3,DinG,cas3,c2c9_V-U4,cas6,cas10,csm2gr11,csm3gr7	Type V-U4	ACCCGCGCTCACGCCGCACCTCA	23	0	0	NA	NA	NA	1	1	TypeV-U4	DEDDh,cas4,WYL,csa3,DinG,cas3,c2c9_V-U4,cas6,cas10,csm2gr11,csm3gr7	NA,NA	NA|104aa|up_9|NZ_CP019610.1_1844487_1844799_-	pfam03413, PepSY, Peptidase propeptide and YPEB domain	NA|254aa|up_8|NZ_CP019610.1_1844855_1845617_+	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|157aa|up_7|NZ_CP019610.1_1845660_1846131_+	PRK10755, PRK10755, two-component system sensor histidine kinase PmrB	NA|169aa|up_6|NZ_CP019610.1_1846244_1846751_+	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|79aa|up_5|NZ_CP019610.1_1846854_1847091_+	COG2002, AbrB, Regulators of stationary/sporulation gene expression [Transcription]	NA|138aa|up_4|NZ_CP019610.1_1847087_1847501_+	cd18681, PIN_MtVapC27-VapC40_like, VapC-like PIN domain of Mycobacterium tuberculosis VapC27, and VapC40, and related proteins	NA|412aa|up_3|NZ_CP019610.1_1847751_1848987_+	COG1373, COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only]	NA|86aa|up_2|NZ_CP019610.1_1849169_1849427_+	COG4118, Phd, Antitoxin of toxin-antitoxin stability system [Cell division and chromosome partitioning]	NA|131aa|up_1|NZ_CP019610.1_1849423_1849816_+	cd18768, PIN_MtVapC4-C5-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC4, VapC5, and related proteins	NA|517aa|up_0|NZ_CP019610.1_1849867_1851418_-	COG1463, Ttg2C, ABC-type transport system involved in resistance to organic solvents, periplasmic component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|482aa|down_0|NZ_CP019610.1_1854150_1855596_-	TIGR00996, Mtu_fam_mce, virulence factor Mce family protein	NA|344aa|down_1|NZ_CP019610.1_1855592_1856624_-	COG1463, Ttg2C, ABC-type transport system involved in resistance to organic solvents, periplasmic component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|405aa|down_2|NZ_CP019610.1_1856620_1857835_-	pfam11887, Mce4_CUP1, Cholesterol uptake porter CUP1 of Mce4, putative	NA|296aa|down_3|NZ_CP019610.1_1857840_1858728_-	COG0767, Ttg2B, ABC-type transport system involved in resistance to organic solvents, permease component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|266aa|down_4|NZ_CP019610.1_1858729_1859527_-	COG0767, Ttg2B, ABC-type transport system involved in resistance to organic solvents, permease component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|241aa|down_5|NZ_CP019610.1_1859523_1860246_-	COG2186, FadR, Transcriptional regulators [Transcription]	NA|796aa|down_6|NZ_CP019610.1_1860382_1862770_+	pfam03706, LPG_synthase_TM, Lysylphosphatidylglycerol synthase TM region	NA|878aa|down_7|NZ_CP019610.1_1862792_1865426_-	COG3537, COG3537, Putative alpha-1,2-mannosidase [Carbohydrate transport and metabolism]	NA|229aa|down_8|NZ_CP019610.1_1865579_1866266_+	pfam10738, Lpp-LpqN, Probable lipoprotein LpqN	NA|136aa|down_9|NZ_CP019610.1_1866325_1866733_-	cd18696, PIN_MtVapC26-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC26 and related proteins
GCF_003287125.1_ASM328712v1	NZ_CP019610	Mycobacterium tuberculosis strain H54 chromosome, complete genome	6	2181875-2181971	3	CRISPRCasFinder	no		DEDDh,cas4,WYL,csa3,DinG,cas3,c2c9_V-U4,cas6,cas10,csm2gr11,csm3gr7	Orphan	CCCGCCGTTGCCACCGTTGCCGAA	24	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas4,WYL,csa3,DinG,cas3,c2c9_V-U4,cas6,cas10,csm2gr11,csm3gr7	NA|161aa|up_8|NZ_CP019610.1_2167572_2168055_+,NA|101aa|up_1|NZ_CP019610.1_2180833_2181136_-,NA	NA|239aa|up_9|NZ_CP019610.1_2166798_2167515_-	cd03392, PAP2_like_2, PAP2_like_2 proteins	NA|161aa|up_8|NZ_CP019610.1_2167572_2168055_+	NA	NA|224aa|up_7|NZ_CP019610.1_2168042_2168714_-	TIGR02476, BluB, 5,6-dimethylbenzimidazole synthase	NA|3182aa|up_6|NZ_CP019610.1_2168916_2178462_+	pfam00823, PPE, PPE family	NA|303aa|up_5|NZ_CP019610.1_2178469_2179378_-	cd09810, LPOR_like_SDR_c_like, light-dependent protochlorophyllide reductase (LPOR)-like, classical (c)-like SDRs	NA|211aa|up_4|NZ_CP019610.1_2179374_2180007_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|142aa|up_3|NZ_CP019610.1_2180142_2180568_-	cd18755, PIN_MtVapC3_VapC21-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC3, VapC21 and related proteins	NA|74aa|up_2|NZ_CP019610.1_2180564_2180786_-	PHA01748, PHA01748, hypothetical protein	NA|101aa|up_1|NZ_CP019610.1_2180833_2181136_-	NA	NA|76aa|up_0|NZ_CP019610.1_2181132_2181360_-	pfam01402, RHH_1, Ribbon-helix-helix protein, copG family	NA|466aa|down_0|NZ_CP019610.1_2183456_2184854_+	cd16027, SGSH, N-sulfoglucosamine sulfohydrolase (SGSH; sulfamidase)	NA|268aa|down_1|NZ_CP019610.1_2184863_2185667_+	COG4424, COG4424, Uncharacterized protein conserved in bacteria [Function unknown]	NA|262aa|down_2|NZ_CP019610.1_2185655_2186441_-	PRK14103, PRK14103, trans-aconitate 2-methyltransferase; Provisional	NA|401aa|down_3|NZ_CP019610.1_2186547_2187750_+	pfam00561, Abhydrolase_1, alpha/beta hydrolase fold	NA|332aa|down_4|NZ_CP019610.1_2187736_2188732_-	TIGR03923, T7SS_EccE, type VII secretion protein EccE	NA|462aa|down_5|NZ_CP019610.1_2188728_2190114_-	TIGR03921, T7SS_mycosin, type VII secretion-associated serine protease mycosin	NA|473aa|down_6|NZ_CP019610.1_2190110_2191529_-	TIGR03920, T7SS_EccD, type VII secretion integral membrane protein EccD	NA|296aa|down_7|NZ_CP019610.1_2191575_2192463_-	pfam14011, ESX-1_EspG, EspG family	NA|97aa|down_8|NZ_CP019610.1_2192473_2192764_-	COG4842, COG4842, Uncharacterized protein conserved in bacteria [Function unknown]	NA|98aa|down_9|NZ_CP019610.1_2192793_2193087_-	TIGR03930, WXG100_ESAT6, WXG100 family type VII secretion target
GCF_003287125.1_ASM328712v1	NZ_CP019610	Mycobacterium tuberculosis strain H54 chromosome, complete genome	7	2182052-2182322	4	CRISPRCasFinder	no		DEDDh,cas4,WYL,csa3,DinG,cas3,c2c9_V-U4,cas6,cas10,csm2gr11,csm3gr7	Orphan	CCCGCCGTTGCCACCGTTGCCGAA	24	0	0	NA	NA	NA	4	4	Orphan	DEDDh,cas4,WYL,csa3,DinG,cas3,c2c9_V-U4,cas6,cas10,csm2gr11,csm3gr7	NA|161aa|up_8|NZ_CP019610.1_2167572_2168055_+,NA|101aa|up_1|NZ_CP019610.1_2180833_2181136_-,NA	NA|239aa|up_9|NZ_CP019610.1_2166798_2167515_-	cd03392, PAP2_like_2, PAP2_like_2 proteins	NA|161aa|up_8|NZ_CP019610.1_2167572_2168055_+	NA	NA|224aa|up_7|NZ_CP019610.1_2168042_2168714_-	TIGR02476, BluB, 5,6-dimethylbenzimidazole synthase	NA|3182aa|up_6|NZ_CP019610.1_2168916_2178462_+	pfam00823, PPE, PPE family	NA|303aa|up_5|NZ_CP019610.1_2178469_2179378_-	cd09810, LPOR_like_SDR_c_like, light-dependent protochlorophyllide reductase (LPOR)-like, classical (c)-like SDRs	NA|211aa|up_4|NZ_CP019610.1_2179374_2180007_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|142aa|up_3|NZ_CP019610.1_2180142_2180568_-	cd18755, PIN_MtVapC3_VapC21-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC3, VapC21 and related proteins	NA|74aa|up_2|NZ_CP019610.1_2180564_2180786_-	PHA01748, PHA01748, hypothetical protein	NA|101aa|up_1|NZ_CP019610.1_2180833_2181136_-	NA	NA|76aa|up_0|NZ_CP019610.1_2181132_2181360_-	pfam01402, RHH_1, Ribbon-helix-helix protein, copG family	NA|466aa|down_0|NZ_CP019610.1_2183456_2184854_+	cd16027, SGSH, N-sulfoglucosamine sulfohydrolase (SGSH; sulfamidase)	NA|268aa|down_1|NZ_CP019610.1_2184863_2185667_+	COG4424, COG4424, Uncharacterized protein conserved in bacteria [Function unknown]	NA|262aa|down_2|NZ_CP019610.1_2185655_2186441_-	PRK14103, PRK14103, trans-aconitate 2-methyltransferase; Provisional	NA|401aa|down_3|NZ_CP019610.1_2186547_2187750_+	pfam00561, Abhydrolase_1, alpha/beta hydrolase fold	NA|332aa|down_4|NZ_CP019610.1_2187736_2188732_-	TIGR03923, T7SS_EccE, type VII secretion protein EccE	NA|462aa|down_5|NZ_CP019610.1_2188728_2190114_-	TIGR03921, T7SS_mycosin, type VII secretion-associated serine protease mycosin	NA|473aa|down_6|NZ_CP019610.1_2190110_2191529_-	TIGR03920, T7SS_EccD, type VII secretion integral membrane protein EccD	NA|296aa|down_7|NZ_CP019610.1_2191575_2192463_-	pfam14011, ESX-1_EspG, EspG family	NA|97aa|down_8|NZ_CP019610.1_2192473_2192764_-	COG4842, COG4842, Uncharacterized protein conserved in bacteria [Function unknown]	NA|98aa|down_9|NZ_CP019610.1_2192793_2193087_-	TIGR03930, WXG100_ESAT6, WXG100 family type VII secretion target
GCF_003287125.1_ASM328712v1	NZ_CP019610	Mycobacterium tuberculosis strain H54 chromosome, complete genome	8	2182592-2182933	5	CRISPRCasFinder	no		DEDDh,cas4,WYL,csa3,DinG,cas3,c2c9_V-U4,cas6,cas10,csm2gr11,csm3gr7	Orphan	CCCGCCGTTGCCACCGTTGCCGAA	24	1	1	2182616-2182636	NZ_CP019610.1_2412449-2412469	NA	5	5	Orphan	DEDDh,cas4,WYL,csa3,DinG,cas3,c2c9_V-U4,cas6,cas10,csm2gr11,csm3gr7	NA|161aa|up_8|NZ_CP019610.1_2167572_2168055_+,NA|101aa|up_1|NZ_CP019610.1_2180833_2181136_-,NA	NA|239aa|up_9|NZ_CP019610.1_2166798_2167515_-	cd03392, PAP2_like_2, PAP2_like_2 proteins	NA|161aa|up_8|NZ_CP019610.1_2167572_2168055_+	NA	NA|224aa|up_7|NZ_CP019610.1_2168042_2168714_-	TIGR02476, BluB, 5,6-dimethylbenzimidazole synthase	NA|3182aa|up_6|NZ_CP019610.1_2168916_2178462_+	pfam00823, PPE, PPE family	NA|303aa|up_5|NZ_CP019610.1_2178469_2179378_-	cd09810, LPOR_like_SDR_c_like, light-dependent protochlorophyllide reductase (LPOR)-like, classical (c)-like SDRs	NA|211aa|up_4|NZ_CP019610.1_2179374_2180007_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|142aa|up_3|NZ_CP019610.1_2180142_2180568_-	cd18755, PIN_MtVapC3_VapC21-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC3, VapC21 and related proteins	NA|74aa|up_2|NZ_CP019610.1_2180564_2180786_-	PHA01748, PHA01748, hypothetical protein	NA|101aa|up_1|NZ_CP019610.1_2180833_2181136_-	NA	NA|76aa|up_0|NZ_CP019610.1_2181132_2181360_-	pfam01402, RHH_1, Ribbon-helix-helix protein, copG family	NA|466aa|down_0|NZ_CP019610.1_2183456_2184854_+	cd16027, SGSH, N-sulfoglucosamine sulfohydrolase (SGSH; sulfamidase)	NA|268aa|down_1|NZ_CP019610.1_2184863_2185667_+	COG4424, COG4424, Uncharacterized protein conserved in bacteria [Function unknown]	NA|262aa|down_2|NZ_CP019610.1_2185655_2186441_-	PRK14103, PRK14103, trans-aconitate 2-methyltransferase; Provisional	NA|401aa|down_3|NZ_CP019610.1_2186547_2187750_+	pfam00561, Abhydrolase_1, alpha/beta hydrolase fold	NA|332aa|down_4|NZ_CP019610.1_2187736_2188732_-	TIGR03923, T7SS_EccE, type VII secretion protein EccE	NA|462aa|down_5|NZ_CP019610.1_2188728_2190114_-	TIGR03921, T7SS_mycosin, type VII secretion-associated serine protease mycosin	NA|473aa|down_6|NZ_CP019610.1_2190110_2191529_-	TIGR03920, T7SS_EccD, type VII secretion integral membrane protein EccD	NA|296aa|down_7|NZ_CP019610.1_2191575_2192463_-	pfam14011, ESX-1_EspG, EspG family	NA|97aa|down_8|NZ_CP019610.1_2192473_2192764_-	COG4842, COG4842, Uncharacterized protein conserved in bacteria [Function unknown]	NA|98aa|down_9|NZ_CP019610.1_2192793_2193087_-	TIGR03930, WXG100_ESAT6, WXG100 family type VII secretion target
GCF_003287125.1_ASM328712v1	NZ_CP019610	Mycobacterium tuberculosis strain H54 chromosome, complete genome	9	2205907-2206902	4	CRT	no		DEDDh,cas4,WYL,csa3,DinG,cas3,c2c9_V-U4,cas6,cas10,csm2gr11,csm3gr7	Orphan	CGGCNNCGGCGGNNNCGGCGG	21	1	4	2206012-2206035|2206012-2206035|2206012-2206035|2206012-2206035	NZ_CP019610.1_121606-121629|NZ_CP019610.1_470886-470909|NZ_CP019610.1_1327416-1327393|NZ_CP019610.1_4269687-4269664	NA	12	12	Orphan	DEDDh,cas4,WYL,csa3,DinG,cas3,c2c9_V-U4,cas6,cas10,csm2gr11,csm3gr7	NA,NA|61aa|down_1|NZ_CP019610.1_2211361_2211544_+	NA|296aa|up_9|NZ_CP019610.1_2191575_2192463_-	pfam14011, ESX-1_EspG, EspG family	NA|97aa|up_8|NZ_CP019610.1_2192473_2192764_-	COG4842, COG4842, Uncharacterized protein conserved in bacteria [Function unknown]	NA|98aa|up_7|NZ_CP019610.1_2192793_2193087_-	TIGR03930, WXG100_ESAT6, WXG100 family type VII secretion target	NA|514aa|up_6|NZ_CP019610.1_2193135_2194677_-	COG5651, COG5651, PPE-repeat proteins [Cell motility and secretion]	NA|103aa|up_5|NZ_CP019610.1_2194679_2194988_-	pfam00934, PE, PE family	NA|1331aa|up_4|NZ_CP019610.1_2194984_2198977_-	TIGR03924, T7SS_EccC_a, type VII secretion protein EccCa	NA|539aa|up_3|NZ_CP019610.1_2198973_2200590_-	pfam05108, T7SS_ESX1_EccB, Type VII secretion system ESX-1, transport TM domain B	NA|632aa|up_2|NZ_CP019610.1_2200586_2202482_-	TIGR03922, T7SS_EccA, type VII secretion AAA-ATPase EccA	NA|303aa|up_1|NZ_CP019610.1_2202705_2203614_-	COG3315, COG3315, O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]	NA|537aa|up_0|NZ_CP019610.1_2203637_2205248_-	COG5651, COG5651, PPE-repeat proteins [Cell motility and secretion]	NA|936aa|down_0|NZ_CP019610.1_2208459_2211267_+	pfam00934, PE, PE family	NA|61aa|down_1|NZ_CP019610.1_2211361_2211544_+	NA	NA|143aa|down_2|NZ_CP019610.1_2211567_2211996_+	cd18678, PIN_MtVapC25_VapC33-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC25, VapC33, and related proteins	NA|307aa|down_3|NZ_CP019610.1_2212035_2212956_-	COG3662, COG3662, Uncharacterized protein conserved in bacteria [Function unknown]	NA|242aa|down_4|NZ_CP019610.1_2213045_2213771_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|194aa|down_5|NZ_CP019610.1_2213700_2214282_-	pfam00903, Glyoxalase, Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily	NA|207aa|down_6|NZ_CP019610.1_2214378_2214999_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|378aa|down_7|NZ_CP019610.1_2214995_2216129_+	pfam12146, Hydrolase_4, Serine aminopeptidase, S33	NA|732aa|down_8|NZ_CP019610.1_2216242_2218438_+	cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26	NA|561aa|down_9|NZ_CP019610.1_2218454_2220137_-	PRK07788, PRK07788, acyl-CoA synthetase; Validated
GCF_003287125.1_ASM328712v1	NZ_CP019610	Mycobacterium tuberculosis strain H54 chromosome, complete genome	10	2210115-2211162	5	CRT	no		DEDDh,cas4,WYL,csa3,DinG,cas3,c2c9_V-U4,cas6,cas10,csm2gr11,csm3gr7	Orphan	CGGNNCCGGCGGNNNCGGCGG	21	1	5	2211079-2211102|2211079-2211102|2211079-2211102|2211079-2211102|2211079-2211102	NZ_CP019610.1_2208073-2208096|NZ_CP019610.1_122248-122271|NZ_CP019610.1_1703542-1703519|NZ_CP019610.1_684213-684236|NZ_CP019610.1_1617148-1617125	NA	16	16	Orphan	DEDDh,cas4,WYL,csa3,DinG,cas3,c2c9_V-U4,cas6,cas10,csm2gr11,csm3gr7	NA,NA|61aa|down_0|NZ_CP019610.1_2211361_2211544_+	NA|97aa|up_9|NZ_CP019610.1_2192473_2192764_-	COG4842, COG4842, Uncharacterized protein conserved in bacteria [Function unknown]	NA|98aa|up_8|NZ_CP019610.1_2192793_2193087_-	TIGR03930, WXG100_ESAT6, WXG100 family type VII secretion target	NA|514aa|up_7|NZ_CP019610.1_2193135_2194677_-	COG5651, COG5651, PPE-repeat proteins [Cell motility and secretion]	NA|103aa|up_6|NZ_CP019610.1_2194679_2194988_-	pfam00934, PE, PE family	NA|1331aa|up_5|NZ_CP019610.1_2194984_2198977_-	TIGR03924, T7SS_EccC_a, type VII secretion protein EccCa	NA|539aa|up_4|NZ_CP019610.1_2198973_2200590_-	pfam05108, T7SS_ESX1_EccB, Type VII secretion system ESX-1, transport TM domain B	NA|632aa|up_3|NZ_CP019610.1_2200586_2202482_-	TIGR03922, T7SS_EccA, type VII secretion AAA-ATPase EccA	NA|303aa|up_2|NZ_CP019610.1_2202705_2203614_-	COG3315, COG3315, O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]	NA|537aa|up_1|NZ_CP019610.1_2203637_2205248_-	COG5651, COG5651, PPE-repeat proteins [Cell motility and secretion]	NA|886aa|up_0|NZ_CP019610.1_2205538_2208196_+	pfam00934, PE, PE family	NA|61aa|down_0|NZ_CP019610.1_2211361_2211544_+	NA	NA|143aa|down_1|NZ_CP019610.1_2211567_2211996_+	cd18678, PIN_MtVapC25_VapC33-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC25, VapC33, and related proteins	NA|307aa|down_2|NZ_CP019610.1_2212035_2212956_-	COG3662, COG3662, Uncharacterized protein conserved in bacteria [Function unknown]	NA|242aa|down_3|NZ_CP019610.1_2213045_2213771_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|194aa|down_4|NZ_CP019610.1_2213700_2214282_-	pfam00903, Glyoxalase, Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily	NA|207aa|down_5|NZ_CP019610.1_2214378_2214999_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|378aa|down_6|NZ_CP019610.1_2214995_2216129_+	pfam12146, Hydrolase_4, Serine aminopeptidase, S33	NA|732aa|down_7|NZ_CP019610.1_2216242_2218438_+	cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26	NA|561aa|down_8|NZ_CP019610.1_2218454_2220137_-	PRK07788, PRK07788, acyl-CoA synthetase; Validated	NA|398aa|down_9|NZ_CP019610.1_2220172_2221366_+	COG3285, COG3285, Predicted eukaryotic-type DNA primase [DNA replication, recombination, and repair]
GCF_003287125.1_ASM328712v1	NZ_CP019610	Mycobacterium tuberculosis strain H54 chromosome, complete genome	11	2842780-2842868	6	CRISPRCasFinder	no		DEDDh,cas4,WYL,csa3,DinG,cas3,c2c9_V-U4,cas6,cas10,csm2gr11,csm3gr7	Orphan	GGCCGTCATCCGGCCCGCATCGTCGCCGAGC	31	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas4,WYL,csa3,DinG,cas3,c2c9_V-U4,cas6,cas10,csm2gr11,csm3gr7	NA|126aa|up_6|NZ_CP019610.1_2837166_2837544_-,NA|233aa|down_0|NZ_CP019610.1_2843064_2843763_+,NA|257aa|down_6|NZ_CP019610.1_2851510_2852281_+	NA|152aa|up_9|NZ_CP019610.1_2835031_2835487_+	cd02199, YjgF_YER057c_UK114_like_1, This group of proteins belong to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function	NA|265aa|up_8|NZ_CP019610.1_2835493_2836288_+	cd16278, metallo-hydrolase-like_MBL-fold, uncharacterized subgroup of the MBL-fold_metallo-hydrolase superfamily; MBL-fold metallo hydrolase domain	NA|225aa|up_7|NZ_CP019610.1_2836393_2837068_-	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]	NA|126aa|up_6|NZ_CP019610.1_2837166_2837544_-	NA	NA|246aa|up_5|NZ_CP019610.1_2837651_2838389_+	COG0177, Nth, Predicted EndoIII-related endonuclease [DNA replication, recombination, and repair]	NA|228aa|up_4|NZ_CP019610.1_2838388_2839072_+	cd02966, TlpA_like_family, TlpA-like family; composed of  TlpA, ResA, DsbE and similar proteins	NA|274aa|up_3|NZ_CP019610.1_2839203_2840025_+	cd03426, CoAse, Coenzyme A pyrophosphatase (CoAse), a member of the Nudix hydrolase superfamily, functions to catalyze the elimination of oxidized inactive CoA, which can inhibit CoA-utilizing enzymes	NA|398aa|up_2|NZ_CP019610.1_2840030_2841224_+	pfam13365, Trypsin_2, Trypsin-like peptidase domain	NA|328aa|up_1|NZ_CP019610.1_2841216_2842200_-	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|173aa|up_0|NZ_CP019610.1_2842200_2842719_-	pfam07332, Phage_holin_3_6, Putative Actinobacterial Holin-X, holin superfamily III	NA|233aa|down_0|NZ_CP019610.1_2843064_2843763_+	NA	NA|652aa|down_1|NZ_CP019610.1_2843798_2845754_-	PRK00174, PRK00174, acetyl-CoA synthetase; Provisional	NA|542aa|down_2|NZ_CP019610.1_2846461_2848087_+	cd00995, PBP2_NikA_DppA_OppA_like, The substrate-binding domain of an ABC-type nickel/oligopeptide-like import system contains the type 2 periplasmic binding fold	NA|309aa|down_3|NZ_CP019610.1_2848088_2849015_+	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|288aa|down_4|NZ_CP019610.1_2849007_2849871_+	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|549aa|down_5|NZ_CP019610.1_2849867_2851514_+	COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]	NA|257aa|down_6|NZ_CP019610.1_2851510_2852281_+	NA	NA|288aa|down_7|NZ_CP019610.1_2853035_2853899_-	TIGR01490, Uncharacterized_protein_Rv3661/MT3761, HAD-superfamily subfamily IB hydrolase, TIGR01490	NA|351aa|down_8|NZ_CP019610.1_2854397_2855450_+	TIGR03815, CpaE_hom_Actino, helicase/secretion neighborhood CpaE-like protein	NA|388aa|down_9|NZ_CP019610.1_2855446_2856610_+	TIGR03819, heli_sec_ATPase, helicase/secretion neighborhood ATPase
GCF_003287125.1_ASM328712v1	NZ_CP019610	Mycobacterium tuberculosis strain H54 chromosome, complete genome	12	3194277-3194402	1	PILER-CR	no		DEDDh,cas4,WYL,csa3,DinG,cas3,c2c9_V-U4,cas6,cas10,csm2gr11,csm3gr7	Orphan	TTTCAACACCGGCATCGGCAAC	22	0	0	NA	NA	NA	2	2	Orphan	DEDDh,cas4,WYL,csa3,DinG,cas3,c2c9_V-U4,cas6,cas10,csm2gr11,csm3gr7	NA|87aa|up_3|NZ_CP019610.1_3187888_3188149_+,NA|96aa|down_0|NZ_CP019610.1_3201268_3201556_+	NA|397aa|up_9|NZ_CP019610.1_3184350_3185541_-	cd02803, OYE_like_FMN_family, Old yellow enzyme (OYE)-like FMN binding domain	NA|86aa|up_8|NZ_CP019610.1_3185582_3185840_-	pfam06769, YoeB_toxin, YoeB-like toxin of bacterial type II toxin-antitoxin system	NA|92aa|up_7|NZ_CP019610.1_3185836_3186112_-	COG2161, StbD, Antitoxin of toxin-antitoxin stability system [Cell division and chromosome partitioning]	NA|282aa|up_6|NZ_CP019610.1_3186235_3187081_+	PRK14193, PRK14193, bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional	NA|98aa|up_5|NZ_CP019610.1_3187077_3187371_+	pfam11222, DUF3017, Protein of unknown function (DUF3017)	NA|130aa|up_4|NZ_CP019610.1_3187384_3187774_-	pfam05305, DUF732, Protein of unknown function (DUF732)	NA|87aa|up_3|NZ_CP019610.1_3187888_3188149_+	NA	NA|73aa|up_2|NZ_CP019610.1_3188175_3188394_+	pfam01565, FAD_binding_4, FAD binding domain	NA|124aa|up_1|NZ_CP019610.1_3188291_3188663_+	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|265aa|up_0|NZ_CP019610.1_3188744_3189539_+	pfam08031, BBE, Berberine and berberine like	NA|96aa|down_0|NZ_CP019610.1_3201268_3201556_+	NA	NA|247aa|down_1|NZ_CP019610.1_3201850_3202591_+	pfam01610, DDE_Tnp_ISL3, Transposase	NA|149aa|down_2|NZ_CP019610.1_3202627_3203074_-	pfam01548, DEDD_Tnp_IS110, Transposase	NA|3158aa|down_3|NZ_CP019610.1_3203699_3213173_+	pfam00823, PPE, PPE family	NA|86aa|down_4|NZ_CP019610.1_3213428_3213686_+	pfam11222, DUF3017, Protein of unknown function (DUF3017)	NA|327aa|down_5|NZ_CP019610.1_3219083_3220064_+	pfam09606, Med15, ARC105 or Med15 subunit of Mediator complex non-fungal	NA|3655aa|down_6|NZ_CP019610.1_3220112_3231077_+	pfam00823, PPE, PPE family	NA|244aa|down_7|NZ_CP019610.1_3231085_3231817_-	pfam08241, Methyltransf_11, Methyltransferase domain	NA|380aa|down_8|NZ_CP019610.1_3231813_3232953_-	PRK00175, metX, homoserine O-acetyltransferase; Provisional	NA|450aa|down_9|NZ_CP019610.1_3232964_3234314_-	PRK07812, PRK07812, O-acetylhomoserine aminocarboxypropyltransferase; Validated
GCF_003287125.1_ASM328712v1	NZ_CP019610	Mycobacterium tuberculosis strain H54 chromosome, complete genome	13	3218029-3219165	6	CRT	no		DEDDh,cas4,WYL,csa3,DinG,cas3,c2c9_V-U4,cas6,cas10,csm2gr11,csm3gr7	Orphan	NCGGCGGCAACGGCGGCN	18	2	46	3218944-3218961|3218944-3218961|3218944-3218961|3219049-3219066|3219049-3219066|3219049-3219066|3219049-3219066|3219049-3219066|3219049-3219066|3219049-3219066|3219049-3219066|3219049-3219066|3219049-3219066|3219049-3219066|3219049-3219066|3219049-3219066|3219049-3219066|3219049-3219066|3219049-3219066|3219049-3219066|3219049-3219066|3219049-3219066|3219049-3219066|3219049-3219066|3219049-3219066|3219049-3219066|3219049-3219066|3219049-3219066|3219049-3219066|3219049-3219066|3219049-3219066|3219049-3219066|3219049-3219066|3219049-3219066|3219049-3219066|3219049-3219066|3219049-3219066|3219049-3219066|3219049-3219066|3219049-3219066|3219049-3219066|3219049-3219066|3219049-3219066|3219049-3219066|3219049-3219066|3219049-3219066	NZ_CP019610.1_188996-189013|NZ_CP019610.1_685091-685108|NZ_CP019610.1_3910687-3910670|NZ_CP019610.1_514036-514053|NZ_CP019610.1_884845-884862|NZ_CP019610.1_1157775-1157792|NZ_CP019610.1_1355818-1355835|NZ_CP019610.1_1575886-1575903|NZ_CP019610.1_1704716-1704699|NZ_CP019610.1_3011530-3011513|NZ_CP019610.1_3216943-3216960|NZ_CP019610.1_188006-188023|NZ_CP019610.1_885382-885399|NZ_CP019610.1_922786-922803|NZ_CP019610.1_923092-923109|NZ_CP019610.1_1053151-1053168|NZ_CP019610.1_1353575-1353592|NZ_CP019610.1_1353593-1353610|NZ_CP019610.1_1355053-1355070|NZ_CP019610.1_1355947-1355964|NZ_CP019610.1_1616365-1616382|NZ_CP019610.1_1920672-1920655|NZ_CP019610.1_1921191-1921174|NZ_CP019610.1_2207322-2207339|NZ_CP019610.1_3009533-3009516|NZ_CP019610.1_3010051-3010034|NZ_CP019610.1_3010591-3010574|NZ_CP019610.1_3011146-3011129|NZ_CP019610.1_3013591-3013574|NZ_CP019610.1_3013639-3013622|NZ_CP019610.1_3023210-3023193|NZ_CP019610.1_3024404-3024387|NZ_CP019610.1_3024683-3024666|NZ_CP019610.1_3024791-3024774|NZ_CP019610.1_3026342-3026325|NZ_CP019610.1_3153270-3153253|NZ_CP019610.1_3177482-3177465|NZ_CP019610.1_3215326-3215343|NZ_CP019610.1_3217072-3217089|NZ_CP019610.1_3219316-3219333|NZ_CP019610.1_3219937-3219954|NZ_CP019610.1_3807505-3807488|NZ_CP019610.1_3910567-3910550|NZ_CP019610.1_4020839-4020856|NZ_CP019610.1_4075996-4075979|NZ_CP019610.1_4162590-4162607	NA	17	17	Orphan	DEDDh,cas4,WYL,csa3,DinG,cas3,c2c9_V-U4,cas6,cas10,csm2gr11,csm3gr7	NA|87aa|up_8|NZ_CP019610.1_3187888_3188149_+,NA|96aa|up_4|NZ_CP019610.1_3201268_3201556_+,NA	NA|130aa|up_9|NZ_CP019610.1_3187384_3187774_-	pfam05305, DUF732, Protein of unknown function (DUF732)	NA|87aa|up_8|NZ_CP019610.1_3187888_3188149_+	NA	NA|73aa|up_7|NZ_CP019610.1_3188175_3188394_+	pfam01565, FAD_binding_4, FAD binding domain	NA|124aa|up_6|NZ_CP019610.1_3188291_3188663_+	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|265aa|up_5|NZ_CP019610.1_3188744_3189539_+	pfam08031, BBE, Berberine and berberine like	NA|96aa|up_4|NZ_CP019610.1_3201268_3201556_+	NA	NA|247aa|up_3|NZ_CP019610.1_3201850_3202591_+	pfam01610, DDE_Tnp_ISL3, Transposase	NA|149aa|up_2|NZ_CP019610.1_3202627_3203074_-	pfam01548, DEDD_Tnp_IS110, Transposase	NA|3158aa|up_1|NZ_CP019610.1_3203699_3213173_+	pfam00823, PPE, PPE family	NA|86aa|up_0|NZ_CP019610.1_3213428_3213686_+	pfam11222, DUF3017, Protein of unknown function (DUF3017)	NA|3655aa|down_0|NZ_CP019610.1_3220112_3231077_+	pfam00823, PPE, PPE family	NA|244aa|down_1|NZ_CP019610.1_3231085_3231817_-	pfam08241, Methyltransf_11, Methyltransferase domain	NA|380aa|down_2|NZ_CP019610.1_3231813_3232953_-	PRK00175, metX, homoserine O-acetyltransferase; Provisional	NA|450aa|down_3|NZ_CP019610.1_3232964_3234314_-	PRK07812, PRK07812, O-acetylhomoserine aminocarboxypropyltransferase; Validated	NA|410aa|down_4|NZ_CP019610.1_3234596_3235826_+	PRK08299, PRK08299, NADP-dependent isocitrate dehydrogenase	NA|215aa|down_5|NZ_CP019610.1_3235892_3236537_-	PRK14875, PRK14875, acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional	NA|337aa|down_6|NZ_CP019610.1_3236809_3237820_+	PRK00927, PRK00927, tryptophanyl-tRNA synthetase; Reviewed	NA|290aa|down_7|NZ_CP019610.1_3237840_3238710_+	TIGR00766, Uncharacterized_protein_Dda3937_02003, inner membrane protein YhjD	NA|147aa|down_8|NZ_CP019610.1_3238743_3239184_-	cd04770, HTH_HMRTR, Helix-Turn-Helix DNA binding domain of Heavy Metal Resistance transcription regulators	NA|282aa|down_9|NZ_CP019610.1_3239658_3240504_+	pfam05305, DUF732, Protein of unknown function (DUF732)
GCF_003287125.1_ASM328712v1	NZ_CP019610	Mycobacterium tuberculosis strain H54 chromosome, complete genome	14	3844118-3845265	7,2,7	CRT,PILER-CR,CRISPRCasFinder	no	cas6,cas10,csm2gr11,csm3gr7	DEDDh,cas4,WYL,csa3,DinG,cas3,c2c9_V-U4,cas6,cas10,csm2gr11,csm3gr7	Type III-A,Type III-D,Type III-C,Type III-B	GTCGTCAGACCCAAAACCCCGAGAGGGGACGGAAAC,GTCGTCAGACCCAAAACCCCGAGAGGGGACGGAAAC,GTCGTCAGACCCAAAACCCCGAGAGGGGACGGAAAC	36,36,36	0	0	NA	NA	II-B,III-A:II-B,III-A:II-B,III-A	15,14,14	15	TypeIII-A,TypeIII-D,TypeIII-C,TypeIII-B	DEDDh,cas4,WYL,csa3,DinG,cas3,c2c9_V-U4,cas6,cas10,csm2gr11,csm3gr7	NA,NA|203aa|down_2|NZ_CP019610.1_3847702_3848311_-,NA|104aa|down_3|NZ_CP019610.1_3848730_3849042_-,NA|86aa|down_4|NZ_CP019610.1_3849146_3849404_-,NA|64aa|down_7|NZ_CP019610.1_3852348_3852540_-,NA|135aa|down_8|NZ_CP019610.1_3852536_3852941_-,NA|85aa|down_9|NZ_CP019610.1_3853088_3853343_+	NA|90aa|up_9|NZ_CP019610.1_3834105_3834375_+	COG5552, COG5552, Uncharacterized conserved protein [Function unknown]	NA|182aa|up_8|NZ_CP019610.1_3834371_3834917_+	COG4293, COG4293, Uncharacterized protein conserved in bacteria [Function unknown]	NA|296aa|up_7|NZ_CP019610.1_3835221_3836109_+	pfam09407, AbiEi_1, AbiEi antitoxin C-terminal domain	NA|295aa|up_6|NZ_CP019610.1_3836111_3836996_+	COG2253, COG2253, Uncharacterized conserved protein [Function unknown]	NA|182aa|up_5|NZ_CP019610.1_3837267_3837813_+	COG4293, COG4293, Uncharacterized protein conserved in bacteria [Function unknown]	cas6|241aa|up_4|NZ_CP019610.1_3838212_3838935_+	COG5551, COG5551, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	cas10|813aa|up_3|NZ_CP019610.1_3838931_3841370_+	cd09680, Cas10_III, CRISPR/Cas system-associated protein Cas10	csm2gr11|125aa|up_2|NZ_CP019610.1_3841366_3841741_+	TIGR01870, CRISPR_type_III-associated_protein_Csm2, CRISPR type III-A/MTUBE-associated protein Csm2	csm3gr7|237aa|up_1|NZ_CP019610.1_3841750_3842461_+	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3	NA|421aa|up_0|NZ_CP019610.1_3842824_3844086_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|271aa|down_0|NZ_CP019610.1_3845413_3846226_-	COG3267, ExeA, Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]	NA|470aa|down_1|NZ_CP019610.1_3846222_3847632_-	pfam00665, rve, Integrase core domain	NA|203aa|down_2|NZ_CP019610.1_3847702_3848311_-	NA	NA|104aa|down_3|NZ_CP019610.1_3848730_3849042_-	NA	NA|86aa|down_4|NZ_CP019610.1_3849146_3849404_-	NA	NA|421aa|down_5|NZ_CP019610.1_3849736_3850998_+	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|371aa|down_6|NZ_CP019610.1_3851037_3852150_-	pfam00665, rve, Integrase core domain	NA|64aa|down_7|NZ_CP019610.1_3852348_3852540_-	NA	NA|135aa|down_8|NZ_CP019610.1_3852536_3852941_-	NA	NA|85aa|down_9|NZ_CP019610.1_3853088_3853343_+	NA
