assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_003286935.1_ASM328693v1	NZ_CP021644	Glaesserella parasuis 29755 chromosome, complete genome	1	959044-959142	1	CRISPRCasFinder	no		DinG,PD-DExK,DEDDh,WYL,cas3,cas2	Orphan	CGACATTCGGGAAGAAGCAAAACCGCCATT	30	0	0	NA	NA	NA	1	1	Orphan	DinG,PD-DExK,DEDDh,WYL,cas3,cas2	NA|74aa|up_9|NZ_CP021644.1_952527_952749_-,NA|148aa|up_7|NZ_CP021644.1_952974_953418_-,NA|149aa|up_6|NZ_CP021644.1_953865_954312_-,NA|280aa|up_4|NZ_CP021644.1_954689_955529_-,NA|73aa|down_7|NZ_CP021644.1_963899_964118_-,NA|188aa|down_8|NZ_CP021644.1_964972_965536_-,NA|88aa|down_9|NZ_CP021644.1_965661_965925_+	NA|74aa|up_9|NZ_CP021644.1_952527_952749_-	NA	NA|62aa|up_8|NZ_CP021644.1_952763_952949_+	pfam07411, DUF1508, Domain of unknown function (DUF1508)	NA|148aa|up_7|NZ_CP021644.1_952974_953418_-	NA	NA|149aa|up_6|NZ_CP021644.1_953865_954312_-	NA	NA|97aa|up_5|NZ_CP021644.1_954371_954662_+	TIGR02684, conserved_hypothetical_protein, probable addiction module antidote protein	NA|280aa|up_4|NZ_CP021644.1_954689_955529_-	NA	NA|283aa|up_3|NZ_CP021644.1_955709_956558_-	pfam04383, KilA-N, KilA-N domain	NA|228aa|up_2|NZ_CP021644.1_956657_957341_-	cd06529, S24_LexA-like, Peptidase S24 LexA-like proteins are involved in the SOS response leading to the repair of single-stranded DNA within the bacterial cell	NA|67aa|up_1|NZ_CP021644.1_957471_957672_+	pfam15943, YdaS_antitoxin, Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT	NA|242aa|up_0|NZ_CP021644.1_958007_958733_+	pfam09669, Phage_pRha, Phage regulatory protein Rha (Phage_pRha)	NA|224aa|down_0|NZ_CP021644.1_959559_960231_+	pfam06992, Phage_lambda_P, Replication protein P	NA|143aa|down_1|NZ_CP021644.1_960292_960721_+	pfam05772, NinB, NinB protein	NA|138aa|down_2|NZ_CP021644.1_960754_961168_-	pfam15919, HicB_lk_antitox, HicB_like antitoxin of bacterial toxin-antitoxin system	NA|61aa|down_3|NZ_CP021644.1_961194_961377_-	pfam07927, HicA_toxin, HicA toxin of bacterial toxin-antitoxin,	NA|190aa|down_4|NZ_CP021644.1_961624_962194_+	pfam05766, NinG, Bacteriophage Lambda NinG protein	NA|126aa|down_5|NZ_CP021644.1_962190_962568_+	pfam06530, Phage_antitermQ, Phage antitermination protein Q	NA|403aa|down_6|NZ_CP021644.1_962624_963833_-	COG3328, COG3328, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|73aa|down_7|NZ_CP021644.1_963899_964118_-	NA	NA|188aa|down_8|NZ_CP021644.1_964972_965536_-	NA	NA|88aa|down_9|NZ_CP021644.1_965661_965925_+	NA
GCF_003286935.1_ASM328693v1	NZ_CP021644	Glaesserella parasuis 29755 chromosome, complete genome	2	1056334-1056711	1,1	PILER-CR,CRT	no		DinG,PD-DExK,DEDDh,WYL,cas3,cas2	Orphan	CCAGGACAAGCGGGTCCAGCAGGACCACGAGGACC,AGGCCCTGCGGGTCCAACGGGACCT	35,25	5	13	1056369-1056404|1056369-1056404|1056369-1056404|1056369-1056404|1056440-1056485|1056523-1056560|1056523-1056560|1056523-1056560|1056523-1056560|1056523-1056560|1056586-1056623|1056649-1056686|1056649-1056686	NZ_CP021644.1_1657674-1657709|NZ_CP021644.1_14630-14665|NZ_CP021644.1_194028-194063|NZ_CP021644.1_1215291-1215326|NZ_CP021644.1_1084575-1084620|NZ_CP021644.1_1056289-1056326|NZ_CP021644.1_1084675-1084712|NZ_CP021644.1_1657377-1657414|NZ_CP021644.1_1657611-1657648|NZ_CP021644.1_669943-669980|NZ_CP021644.1_1657674-1657711|NZ_CP021644.1_1433119-1433082|NZ_CP021644.1_1657737-1657774	NA:NA	2,3	3	Orphan	DinG,PD-DExK,DEDDh,WYL,cas3,cas2	NA|121aa|up_9|NZ_CP021644.1_1044168_1044531_+,NA|216aa|down_5|NZ_CP021644.1_1064406_1065054_+	NA|121aa|up_9|NZ_CP021644.1_1044168_1044531_+	NA	NA|357aa|up_8|NZ_CP021644.1_1044634_1045705_+	PRK14018, PRK14018, bifunctional peptide-methionine (S)-S-oxide reductase MsrA/peptide-methionine (R)-S-oxide reductase MsrB	NA|217aa|up_7|NZ_CP021644.1_1045706_1046357_+	pfam02683, DsbD, Cytochrome C biogenesis protein transmembrane region	NA|160aa|up_6|NZ_CP021644.1_1046374_1046854_+	PRK14018, PRK14018, bifunctional peptide-methionine (S)-S-oxide reductase MsrA/peptide-methionine (R)-S-oxide reductase MsrB	NA|405aa|up_5|NZ_CP021644.1_1047650_1048865_+	PRK15132, PRK15132, tyrosine transporter TyrP; Provisional	NA|406aa|up_4|NZ_CP021644.1_1049012_1050230_+	PRK15132, PRK15132, tyrosine transporter TyrP; Provisional	NA|177aa|up_3|NZ_CP021644.1_1050371_1050902_-	PRK04946, PRK04946, endonuclease SmrB	NA|315aa|up_2|NZ_CP021644.1_1050988_1051933_+	PRK11805, PRK11805, 50S ribosomal protein L3 N(5)-glutamine methyltransferase	NA|341aa|up_1|NZ_CP021644.1_1052047_1053070_+	PRK10703, PRK10703, HTH-type transcriptional repressor PurR	NA|199aa|up_0|NZ_CP021644.1_1053080_1053677_+	COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown]	NA|364aa|down_0|NZ_CP021644.1_1058482_1059574_-	PRK11162, mltA, murein transglycosylase A; Provisional	NA|660aa|down_1|NZ_CP021644.1_1059684_1061664_-	PRK05054, PRK05054, exoribonuclease II; Provisional	NA|115aa|down_2|NZ_CP021644.1_1061878_1062223_+	pfam06296, RelE, RelE toxin of RelE / RelB toxin-antitoxin system	NA|99aa|down_3|NZ_CP021644.1_1062225_1062522_+	COG2944, COG2944, Predicted transcriptional regulator [Transcription]	NA|258aa|down_4|NZ_CP021644.1_1063616_1064390_+	pfam14281, PDDEXK_4, PD-(D/E)XK nuclease superfamily	NA|216aa|down_5|NZ_CP021644.1_1064406_1065054_+	NA	NA|239aa|down_6|NZ_CP021644.1_1065332_1066049_+	cd02201, FtsZ_type1, Filamenting temperature sensitive mutant Z, type 1	NA|403aa|down_7|NZ_CP021644.1_1066093_1067302_+	COG3328, COG3328, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|263aa|down_8|NZ_CP021644.1_1069654_1070443_-	COG0623, FabI, Enoyl-[acyl-carrier-protein]	NA|209aa|down_9|NZ_CP021644.1_1070685_1071312_+	PRK11188, rrmJ, 23S rRNA (uridine(2552)-2'-O)-methyltransferase RlmE
GCF_003286935.1_ASM328693v1	NZ_CP021644	Glaesserella parasuis 29755 chromosome, complete genome	3	1184486-1184584	2	CRISPRCasFinder	no		DinG,PD-DExK,DEDDh,WYL,cas3,cas2	Orphan	CGACATTCGGGAAGAAGCAAAACCGCCATT	30	0	0	NA	NA	NA	1	1	Orphan	DinG,PD-DExK,DEDDh,WYL,cas3,cas2	NA|111aa|up_8|NZ_CP021644.1_1177908_1178241_+,NA|74aa|up_6|NZ_CP021644.1_1179372_1179594_-,NA|148aa|up_4|NZ_CP021644.1_1179805_1180249_-,NA|155aa|up_3|NZ_CP021644.1_1180613_1181078_-,NA|316aa|up_2|NZ_CP021644.1_1181061_1182009_-,NA|118aa|down_2|NZ_CP021644.1_1186159_1186513_+,NA|65aa|down_5|NZ_CP021644.1_1187557_1187752_-,NA|62aa|down_6|NZ_CP021644.1_1188053_1188239_-,NA|60aa|down_8|NZ_CP021644.1_1189726_1189906_+,NA|155aa|down_9|NZ_CP021644.1_1189898_1190363_-	NA|63aa|up_9|NZ_CP021644.1_1177608_1177797_+	PRK11675, PRK11675, LexA regulated protein; Provisional	NA|111aa|up_8|NZ_CP021644.1_1177908_1178241_+	NA	NA|214aa|up_7|NZ_CP021644.1_1178313_1178955_-	pfam12083, DUF3560, Domain of unknown function (DUF3560)	NA|74aa|up_6|NZ_CP021644.1_1179372_1179594_-	NA	NA|57aa|up_5|NZ_CP021644.1_1179608_1179779_+	pfam07411, DUF1508, Domain of unknown function (DUF1508)	NA|148aa|up_4|NZ_CP021644.1_1179805_1180249_-	NA	NA|155aa|up_3|NZ_CP021644.1_1180613_1181078_-	NA	NA|316aa|up_2|NZ_CP021644.1_1181061_1182009_-	NA	NA|231aa|up_1|NZ_CP021644.1_1182074_1182767_-	COG2932, COG2932, Predicted transcriptional regulator [Transcription]	NA|75aa|up_0|NZ_CP021644.1_1182887_1183112_+	pfam15943, YdaS_antitoxin, Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT	NA|224aa|down_0|NZ_CP021644.1_1185001_1185673_+	pfam06992, Phage_lambda_P, Replication protein P	NA|143aa|down_1|NZ_CP021644.1_1185734_1186163_+	pfam05772, NinB, NinB protein	NA|118aa|down_2|NZ_CP021644.1_1186159_1186513_+	NA	NA|193aa|down_3|NZ_CP021644.1_1186656_1187235_+	pfam05766, NinG, Bacteriophage Lambda NinG protein	NA|122aa|down_4|NZ_CP021644.1_1187224_1187590_+	pfam06530, Phage_antitermQ, Phage antitermination protein Q	NA|65aa|down_5|NZ_CP021644.1_1187557_1187752_-	NA	NA|62aa|down_6|NZ_CP021644.1_1188053_1188239_-	NA	NA|230aa|down_7|NZ_CP021644.1_1188807_1189497_+	COG3617, COG3617, Prophage antirepressor [Transcription]	NA|60aa|down_8|NZ_CP021644.1_1189726_1189906_+	NA	NA|155aa|down_9|NZ_CP021644.1_1189898_1190363_-	NA
GCF_003286935.1_ASM328693v1	NZ_CP021644	Glaesserella parasuis 29755 chromosome, complete genome	4	1287627-1287729	3	CRISPRCasFinder	no		DinG,PD-DExK,DEDDh,WYL,cas3,cas2	Orphan	AAATCAAAAATACGTGAAAAACGTTGATAACGGACACAC	39	0	0	NA	NA	NA	1	1	Orphan	DinG,PD-DExK,DEDDh,WYL,cas3,cas2	NA,NA	NA|500aa|up_9|NZ_CP021644.1_1272143_1273643_-	PRK10854, PRK10854, exopolyphosphatase; Provisional	NA|781aa|up_8|NZ_CP021644.1_1273915_1276258_+	COG1629, CirA, Outer membrane receptor proteins, mostly Fe transport [Inorganic ion transport and metabolism]	NA|468aa|up_7|NZ_CP021644.1_1276471_1277875_+	PRK03932, asnC, asparaginyl-tRNA synthetase; Validated	NA|91aa|up_6|NZ_CP021644.1_1278052_1278325_+	TIGR01621, Uncharacterized_RNA_pseudouridine_synthase_HI_0042, pseudouridine synthase Rlu family protein, TIGR01621	NA|87aa|up_5|NZ_CP021644.1_1278318_1278579_-	pfam06183, DinI, DinI-like family	NA|365aa|up_4|NZ_CP021644.1_1278843_1279938_-	PRK02731, PRK02731, histidinol-phosphate aminotransferase; Validated	NA|1055aa|up_3|NZ_CP021644.1_1279972_1283137_-	COG0610, COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]	NA|213aa|up_2|NZ_CP021644.1_1283816_1284455_-	pfam14355, Abi_C, Abortive infection C-terminus	NA|459aa|up_1|NZ_CP021644.1_1284451_1285828_-	cd17278, RMtype1_S_LdeBORF1052P-TRD2-CR2, Type I restriction-modification system specificity (S) subunit Target Recognition Domain-ConseRved domain (TRD-CR), similar to Lactobacillus delbrueckii subsp	NA|547aa|up_0|NZ_CP021644.1_1285820_1287461_-	pfam02384, N6_Mtase, N-6 DNA Methylase	NA|324aa|down_0|NZ_CP021644.1_1287902_1288874_+	COG3547, COG3547, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|361aa|down_1|NZ_CP021644.1_1288912_1289995_-	PRK05355, PRK05355, 3-phosphoserine/phosphohydroxythreonine transaminase	NA|136aa|down_2|NZ_CP021644.1_1290059_1290467_-	cd09872, PIN_Sll0205-like, VapC-like PIN domain of Sll0205 protein and homologs	NA|88aa|down_3|NZ_CP021644.1_1290463_1290727_-	COG4118, Phd, Antitoxin of toxin-antitoxin stability system [Cell division and chromosome partitioning]	NA|442aa|down_4|NZ_CP021644.1_1290790_1292116_-	PRK10879, PRK10879, proline aminopeptidase P II; Provisional	NA|259aa|down_5|NZ_CP021644.1_1292588_1293365_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|242aa|down_6|NZ_CP021644.1_1293464_1294190_+	PRK10955, PRK10955, envelope stress response regulator transcription factor CpxR	NA|459aa|down_7|NZ_CP021644.1_1294258_1295635_+	PRK09470, cpxA, envelope stress sensor histidine kinase CpxA	NA|231aa|down_8|NZ_CP021644.1_1295717_1296410_+	PRK10839, PRK10839, 16S rRNA pseudouridine(516) synthase RsuA	NA|399aa|down_9|NZ_CP021644.1_1296410_1297607_+	PRK11102, PRK11102, Bcr/CflA family multidrug efflux MFS transporter
GCF_003286935.1_ASM328693v1	NZ_CP021644	Glaesserella parasuis 29755 chromosome, complete genome	5	1657422-1657591	2	PILER-CR	no		DinG,PD-DExK,DEDDh,WYL,cas3,cas2	Orphan	CCAGGACAAGCGGGTCCAGCAGGACCACGAGGACC	35	2	5	1657457-1657492|1657457-1657492|1657457-1657492|1657457-1657492|1657528-1657573	NZ_CP021644.1_1657674-1657709|NZ_CP021644.1_14630-14665|NZ_CP021644.1_194028-194063|NZ_CP021644.1_1215291-1215326|NZ_CP021644.1_1084575-1084620	NA	2	2	Orphan	DinG,PD-DExK,DEDDh,WYL,cas3,cas2	NA,NA	NA|210aa|up_9|NZ_CP021644.1_1644200_1644830_+	PRK00215, PRK00215, transcriptional repressor LexA	NA|103aa|up_8|NZ_CP021644.1_1644912_1645221_+	PRK00446, cyaY, frataxin-like protein; Provisional	NA|610aa|up_7|NZ_CP021644.1_1645220_1647050_+	PRK11057, PRK11057, ATP-dependent DNA helicase RecQ; Provisional	NA|676aa|up_6|NZ_CP021644.1_1647107_1649135_-	PRK07956, ligA, NAD-dependent DNA ligase LigA; Validated	NA|273aa|up_5|NZ_CP021644.1_1649198_1650017_-	PRK01741, PRK01741, cell division protein ZipA; Provisional	NA|252aa|up_4|NZ_CP021644.1_1650125_1650881_+	PRK04949, PRK04949, putative sulfate transport protein CysZ; Validated	NA|115aa|up_3|NZ_CP021644.1_1651199_1651544_-	PRK05470, PRK05470, fumarate reductase subunit FrdD	NA|131aa|up_2|NZ_CP021644.1_1651557_1651950_-	PRK04987, PRK04987, fumarate reductase subunit FrdC	NA|257aa|up_1|NZ_CP021644.1_1651962_1652733_-	PRK12385, PRK12385, succinate dehydrogenase/fumarate reductase iron-sulfur subunit	NA|595aa|up_0|NZ_CP021644.1_1652739_1654524_-	PRK09231, PRK09231, fumarate reductase flavoprotein subunit; Validated	NA|889aa|down_0|NZ_CP021644.1_1658811_1661478_-	PRK05560, PRK05560, DNA gyrase subunit A; Validated	NA|84aa|down_1|NZ_CP021644.1_1661827_1662079_+	cd01191, INT_C_like_2, Uncharacterized site-specific tyrosine recombinase, C-terminal catalytic domain	NA|98aa|down_2|NZ_CP021644.1_1662045_1662339_+	cd01191, INT_C_like_2, Uncharacterized site-specific tyrosine recombinase, C-terminal catalytic domain	NA|340aa|down_3|NZ_CP021644.1_1662430_1663450_-	PRK15425, gapA, glyceraldehyde-3-phosphate dehydrogenase	NA|132aa|down_4|NZ_CP021644.1_1663679_1664075_+	PRK00222, PRK00222, peptide-methionine (R)-S-oxide reductase MsrB	NA|368aa|down_5|NZ_CP021644.1_1664156_1665260_-	PRK10808, PRK10808, outer membrane protein A; Reviewed	NA|1031aa|down_6|NZ_CP021644.1_1665663_1668756_+	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|140aa|down_7|NZ_CP021644.1_1669088_1669508_+	PRK10254, PRK10254, proofreading thioesterase EntH	NA|105aa|down_8|NZ_CP021644.1_1670890_1671205_-	TIGR01068, Thioredoxin-like_protein_slr0233, thioredoxin	NA|210aa|down_9|NZ_CP021644.1_1671501_1672131_-	PRK10229, PRK10229, threonine efflux system; Provisional
