assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_003285225.1_ASM328522v1	NZ_CP017666	Streptococcus suis strain 0061 chromosome, complete genome	1	383115-383221	1	CRISPRCasFinder	no		cas3,DinG,cas9,cas1,cas2,csn2,csa3,WYL,DEDDh	Orphan	GTCTCTTTTTTTAAAAAAATCTGTTGAAAAGTACTTT	37	1	1	383152-383184	NZ_CP017666.1_533922-533890	NA	1	1	Orphan	cas3,DinG,cas9,cas1,cas2,csn2,csa3,WYL,DEDDh	NA,NA	NA|63aa|up_9|NZ_CP017666.1_368352_368541_+	PRK00359, rpmB, 50S ribosomal protein L28; Reviewed	NA|673aa|up_8|NZ_CP017666.1_374495_376514_+	PRK10917, PRK10917, ATP-dependent DNA helicase RecG; Provisional	NA|320aa|up_7|NZ_CP017666.1_376576_377536_-	cd08964, L-asparaginase_II, Type II (periplasmic) bacterial L-asparaginase	NA|282aa|up_6|NZ_CP017666.1_377605_378451_+	cd07517, HAD_HPP, phosphatase, similar to Bacteroides thetaiotaomicron VPI-5482 BT4131 hexose phosphate phosphatase; belongs to the haloacid dehalogenase-like superfamily	NA|173aa|up_5|NZ_CP017666.1_378452_378971_+	COG4696, COG4696, Uncharacterized protein conserved in bacteria [Function unknown]	NA|151aa|up_4|NZ_CP017666.1_378986_379439_-	pfam00582, Usp, Universal stress protein family	NA|405aa|up_3|NZ_CP017666.1_379593_380808_+	PRK09265, PRK09265, aminotransferase AlaT; Validated	NA|263aa|up_2|NZ_CP017666.1_380959_381748_+	PRK04158, PRK04158, GTP-sensing pleiotropic transcriptional regulator CodY	NA|184aa|up_1|NZ_CP017666.1_381749_382301_+	cd00431, cysteine_hydrolases, Cysteine hydrolases; This family contains amidohydrolases, like CSHase (N-carbamoylsarcosine amidohydrolase), involved in creatine metabolism and nicotinamidase, converting nicotinamide to nicotinic acid and ammonia in the pyridine nucleotide cycle	NA|116aa|up_0|NZ_CP017666.1_382716_383064_+	PRK05338, rplS, 50S ribosomal protein L19; Provisional	NA|225aa|down_0|NZ_CP017666.1_383320_383995_+	cd02911, arch_FMN, Archeal FMN-binding domain	NA|101aa|down_1|NZ_CP017666.1_384211_384514_+	PRK00034, gatC, Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC	NA|489aa|down_2|NZ_CP017666.1_384513_385980_+	PRK00012, gatA, Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA	NA|480aa|down_3|NZ_CP017666.1_385979_387419_+	PRK05477, gatB, Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB	NA|333aa|down_4|NZ_CP017666.1_387581_388580_-	cd01544, PBP1_GalR, ligand-binding domain of DNA transcription repressor GalR which is one of two regulatory proteins involved in galactose transport and metabolism	NA|388aa|down_5|NZ_CP017666.1_388712_389876_+	PRK05322, PRK05322, galactokinase; Provisional	NA|493aa|down_6|NZ_CP017666.1_390028_391507_+	PRK05270, PRK05270, UDP-glucose--hexose-1-phosphate uridylyltransferase	NA|303aa|down_7|NZ_CP017666.1_392025_392934_+	TIGR00950, Uncharacterized_inner_membrane_transporter_YicL, Carboxylate/Amino Acid/Amine Transporter	NA|210aa|down_8|NZ_CP017666.1_392981_393611_+	COG3142, CutC, Uncharacterized protein involved in copper resistance [Inorganic ion transport and metabolism]	NA|226aa|down_9|NZ_CP017666.1_393851_394529_+	TIGR04320, hypothetical_protein, SEC10/PgrA surface exclusion domain
GCF_003285225.1_ASM328522v1	NZ_CP017666	Streptococcus suis strain 0061 chromosome, complete genome	2	812098-813917	2,1,1	CRISPRCasFinder,CRT,PILER-CR	no	cas9,cas1,cas2,csn2	cas3,DinG,cas9,cas1,cas2,csn2,csa3,WYL,DEDDh	Type II-C,Type II-B,Type II-A	GTTTTAGAGCTGTGCTGTTTCGAATGGTTTCAAAAC,GTTTTAGAGCTGTGCTGTTTCGAATGGTTTCAAAAC,GTTTTAGAGCTGTGCTGTTTCGAATGGTTTCAAAAC	36,36,36	0	0	NA	NA	II-A:II-A:II-A	26,27,16	27	TypeII-C,TypeII-B,TypeII-A	cas3,DinG,cas9,cas1,cas2,csn2,csa3,WYL,DEDDh	NA,NA	NA|56aa|up_9|NZ_CP017666.1_801966_802134_+	pfam14205, Cys_rich_KTR, Cysteine-rich KTR	NA|118aa|up_8|NZ_CP017666.1_802193_802547_-	pfam18430, DBD_HTH, Putative DNA-binding domain	NA|141aa|up_7|NZ_CP017666.1_803050_803473_+	TIGR02937, RNA_polymerase_sigma_factor, RNA polymerase sigma factor, sigma-70 family	NA|77aa|up_6|NZ_CP017666.1_803469_803700_+	pfam12645, HTH_16, Helix-turn-helix domain	NA|68aa|up_5|NZ_CP017666.1_804160_804364_+	pfam09035, Tn916-Xis, Excisionase from transposon Tn916	NA|406aa|up_4|NZ_CP017666.1_804445_805663_+	pfam00589, Phage_integrase, Phage integrase family	cas9|1382aa|up_3|NZ_CP017666.1_805991_810137_+	TIGR01865, conserved_hypothetical_protein, CRISPR subtype II/NMENI RNA-guided endonuclease Cas9/Csn1	cas1|289aa|up_2|NZ_CP017666.1_810136_811003_+	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1	cas2|111aa|up_1|NZ_CP017666.1_810999_811332_+	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	csn2|222aa|up_0|NZ_CP017666.1_811333_811999_+	cd09758, Csn2, CRISPR/Cas system-associated protein Csn2	NA|225aa|down_0|NZ_CP017666.1_814265_814940_+	PRK00702, PRK00702, ribose-5-phosphate isomerase RpiA	NA|404aa|down_1|NZ_CP017666.1_815265_816477_+	PRK05362, PRK05362, phosphopentomutase; Provisional	NA|119aa|down_2|NZ_CP017666.1_816476_816833_+	cd03034, ArsC_ArsC, Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli	NA|270aa|down_3|NZ_CP017666.1_816844_817654_+	PRK08202, PRK08202, purine nucleoside phosphorylase; Provisional	NA|238aa|down_4|NZ_CP017666.1_817686_818400_+	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase	NA|755aa|down_5|NZ_CP017666.1_818782_821047_+	cd04300, GT35_Glycogen_Phosphorylase, glycogen phosphorylase and similar proteins	NA|193aa|down_6|NZ_CP017666.1_821070_821649_-	pfam04892, VanZ, VanZ like family	NA|376aa|down_7|NZ_CP017666.1_821761_822889_+	PRK08599, PRK08599, oxygen-independent coproporphyrinogen III oxidase	NA|247aa|down_8|NZ_CP017666.1_823118_823859_+	pfam01643, Acyl-ACP_TE, Acyl-ACP thioesterase	NA|206aa|down_9|NZ_CP017666.1_823845_824463_+	cd04672, Nudix_Hydrolase_14, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X
GCF_003285225.1_ASM328522v1	NZ_CP017666	Streptococcus suis strain 0061 chromosome, complete genome	3	1163517-1163692	2	PILER-CR	no		cas3,DinG,cas9,cas1,cas2,csn2,csa3,WYL,DEDDh	Orphan	CGCTTTCTTGTTTTTAGGCTCGGGTTAAAACAGTCTATCCGTAGACTGT	49	0	0	NA	NA	NA	2	2	Orphan	cas3,DinG,cas9,cas1,cas2,csn2,csa3,WYL,DEDDh	NA,NA	NA|456aa|up_9|NZ_CP017666.1_1150569_1151937_-	PRK09564, PRK09564, coenzyme A disulfide reductase; Reviewed	NA|113aa|up_8|NZ_CP017666.1_1152122_1152461_-	PRK09263, PRK09263, anaerobic ribonucleoside triphosphate reductase; Provisional	NA|597aa|up_7|NZ_CP017666.1_1152627_1154418_+	cd09609, M3B_PepF, Peptidase family M3B, oligopeptidase F (PepF)	NA|131aa|up_6|NZ_CP017666.1_1154446_1154839_-	COG0400, COG0400, Predicted esterase [General function prediction only]	NA|317aa|up_5|NZ_CP017666.1_1155061_1156012_-	cd08346, PcpA_N_like, N-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins	NA|236aa|up_4|NZ_CP017666.1_1156143_1156851_-	COG0580, GlpF, Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) [Carbohydrate transport and metabolism]	NA|610aa|up_3|NZ_CP017666.1_1156864_1158694_-	NF033461, glycerol3P_ox_1, type 1 glycerol-3-phosphate oxidase	NA|505aa|up_2|NZ_CP017666.1_1158769_1160284_-	PRK00047, glpK, glycerol kinase GlpK	NA|488aa|up_1|NZ_CP017666.1_1160512_1161976_-	pfam05043, Mga, Mga helix-turn-helix domain	NA|451aa|up_0|NZ_CP017666.1_1161965_1163318_-	PRK09564, PRK09564, coenzyme A disulfide reductase; Reviewed	NA|312aa|down_0|NZ_CP017666.1_1163693_1164629_-	PRK03170, PRK03170, dihydrodipicolinate synthase; Provisional	NA|359aa|down_1|NZ_CP017666.1_1164693_1165770_-	PRK14874, PRK14874, aspartate-semialdehyde dehydrogenase; Provisional	NA|365aa|down_2|NZ_CP017666.1_1165937_1167032_-	PRK09423, gldA, glycerol dehydrogenase; Provisional	NA|319aa|down_3|NZ_CP017666.1_1167152_1168109_-	cd08550, GlyDH-like, Glycerol_dehydrogenase-like	NA|223aa|down_4|NZ_CP017666.1_1168140_1168809_-	PRK12656, PRK12656, fructose-6-phosphate aldolase; Reviewed	NA|815aa|down_5|NZ_CP017666.1_1168823_1171268_-	cd01677, PFL2_DhaB_BssA, Pyruvate formate lyase 2 and related enzymes	NA|434aa|down_6|NZ_CP017666.1_1171419_1172721_-	COG1455, CelB, Phosphotransferase system cellobiose-specific component IIC [Carbohydrate transport and metabolism]	NA|102aa|down_7|NZ_CP017666.1_1172733_1173039_-	COG1440, CelA, Phosphotransferase system cellobiose-specific component IIB [Carbohydrate transport and metabolism]	NA|108aa|down_8|NZ_CP017666.1_1173071_1173395_-	COG1447, CelC, Phosphotransferase system cellobiose-specific component IIA [Carbohydrate transport and metabolism]	NA|325aa|down_9|NZ_CP017666.1_1173582_1174557_-	COG2390, DeoR, Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription]
GCF_003285225.1_ASM328522v1	NZ_CP017666	Streptococcus suis strain 0061 chromosome, complete genome	4	1860259-1860347	3	CRISPRCasFinder	no	WYL	cas3,DinG,cas9,cas1,cas2,csn2,csa3,WYL,DEDDh	Unclear	TCCAACCTCCAACAGTCTATCCCCAGACTGT	31	0	0	NA	NA	NA	1	1	Orphan	cas3,DinG,cas9,cas1,cas2,csn2,csa3,WYL,DEDDh	NA|62aa|up_4|NZ_CP017666.1_1856067_1856253_-,NA|177aa|down_5|NZ_CP017666.1_1866916_1867447_-,NA|170aa|down_7|NZ_CP017666.1_1869582_1870092_-	NA|429aa|up_9|NZ_CP017666.1_1845296_1846583_-	COG3538, COG3538, Uncharacterized conserved protein [Function unknown]	NA|714aa|up_8|NZ_CP017666.1_1847420_1849562_+	COG3537, COG3537, Putative alpha-1,2-mannosidase [Carbohydrate transport and metabolism]	NA|1492aa|up_7|NZ_CP017666.1_1849601_1854077_-	COG4724, COG4724, Endo-beta-N-acetylglucosaminidase D [Carbohydrate transport and metabolism]	NA|133aa|up_6|NZ_CP017666.1_1854322_1854721_-	COG1939, COG1939, Ribonuclease III family protein [Replication, recombination, and    repair]	NA|448aa|up_5|NZ_CP017666.1_1854713_1856057_-	PRK00260, cysS, cysteinyl-tRNA synthetase; Validated	NA|62aa|up_4|NZ_CP017666.1_1856067_1856253_-	NA	NA|206aa|up_3|NZ_CP017666.1_1856350_1856968_-	COG1045, CysE, Serine acetyltransferase [Amino acid transport and metabolism]	NA|740aa|up_2|NZ_CP017666.1_1857021_1859241_-	PRK11824, PRK11824, polynucleotide phosphorylase/polyadenylase; Provisional	NA|112aa|up_1|NZ_CP017666.1_1859492_1859828_-	pfam05016, ParE_toxin, ParE toxin of type II toxin-antitoxin system, parDE	NA|96aa|up_0|NZ_CP017666.1_1859820_1860108_-	COG3077, RelB, DNA-damage-inducible protein J [DNA replication, recombination, and repair]	NA|90aa|down_0|NZ_CP017666.1_1860526_1860796_-	PRK05626, rpsO, 30S ribosomal protein S15; Reviewed	NA|426aa|down_1|NZ_CP017666.1_1860998_1862276_-	PRK10720, PRK10720, uracil transporter; Provisional	NA|632aa|down_2|NZ_CP017666.1_1862529_1864425_-	pfam03235, DUF262, Protein of unknown function DUF262	NA|430aa|down_3|NZ_CP017666.1_1864421_1865711_-	pfam03235, DUF262, Protein of unknown function DUF262	WYL|317aa|down_4|NZ_CP017666.1_1865932_1866883_-	pfam13280, WYL, WYL domain	NA|177aa|down_5|NZ_CP017666.1_1866916_1867447_-	NA	NA|593aa|down_6|NZ_CP017666.1_1867463_1869242_-	TIGR02881, Stage_V_sporulation_protein_K, stage V sporulation protein K	NA|170aa|down_7|NZ_CP017666.1_1869582_1870092_-	NA	NA|437aa|down_8|NZ_CP017666.1_1870514_1871825_-	TIGR03173, pbuX, xanthine permease	NA|194aa|down_9|NZ_CP017666.1_1872041_1872623_+	PRK09219, PRK09219, xanthine phosphoribosyltransferase; Validated
