The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP017666	Streptococcus suis strain 0061 chromosome, complete genome	2138420	460845	531985	2138420	tRNA,protease,transposase	Streptococcus_phage(40.0%)	58	NA	NA
WP_162564090.1|460845_462138_-|transposase	IS110 family transposase	transposase	A0A1X9I619	Streptococcus_phage	95.0	2.9e-215
WP_024401993.1|462363_463716_-	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	E4ZFI6	Streptococcus_phage	34.6	7.2e-76
WP_013730191.1|463753_464530_+	recombination regulator RecX	NA	NA	NA	NA	NA
WP_004194106.1|464605_465139_+	DUF402 domain-containing protein	NA	NA	NA	NA	NA
WP_002942715.1|465196_465514_+	DUF960 domain-containing protein	NA	NA	NA	NA	NA
WP_024384348.1|465613_466345_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_015646515.1|466485_467196_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_044683662.1|467417_469190_+	beta-galactosidase	NA	NA	NA	NA	NA
WP_004194095.1|469243_469729_+	PTS system mannose/fructose/N-acetylgalactosamine-transporter subunit IIB	NA	NA	NA	NA	NA
WP_024384350.1|469767_470664_+	PTS mannose/fructose/sorbose/N-acetylgalactosamine transporter subunit IIC	NA	NA	NA	NA	NA
WP_024394307.1|470650_471469_+	PTS system mannose/fructose/sorbose family transporter subunit IID	NA	NA	NA	NA	NA
WP_105120613.1|471468_471870_+	PTS fructose transporter subunit IIA	NA	NA	NA	NA	NA
WP_044692210.1|472193_473195_+	galactose mutarotase	NA	NA	NA	NA	NA
WP_002943432.1|473305_473560_+	DUF1912 family protein	NA	NA	NA	NA	NA
WP_044778410.1|473580_473967_+	helicase	NA	NA	NA	NA	NA
WP_004194070.1|474208_474598_+	hypothetical protein	NA	V5UQY3	Oenococcus_phage	51.6	1.1e-32
WP_105119220.1|474594_475167_+	shikimate kinase	NA	NA	NA	NA	NA
WP_105184285.1|475280_477932_+|tRNA	valine--tRNA ligase	tRNA	A0A1V0S951	Catovirus	41.4	7.5e-154
WP_105184284.1|478010_480170_+	sensor histidine kinase	NA	NA	NA	NA	NA
WP_105184283.1|480156_481263_+	response regulator	NA	NA	NA	NA	NA
WP_105184282.1|481246_482485_+	DNA cytosine methyltransferase	NA	M1PSQ0	Streptococcus_phage	30.2	5.8e-32
WP_105184281.1|482536_483298_+	DUF3883 domain-containing protein	NA	NA	NA	NA	NA
WP_105184280.1|483340_484399_+	MmcQ family protein	NA	NA	NA	NA	NA
WP_014637558.1|484481_485474_+	aspartate--ammonia ligase	NA	A0A1C9C5F0	Heterosigma_akashiwo_virus	37.9	1.2e-51
WP_105137943.1|485509_486766_-|transposase	ISL3 family transposase	transposase	A0A1S5SBP9	Streptococcus_phage	72.9	1.1e-171
WP_015646535.1|487028_488876_+	translational GTPase TypA	NA	NA	NA	NA	NA
WP_024399526.1|488893_489184_+	DUF3165 family protein	NA	NA	NA	NA	NA
WP_105184213.1|490632_491697_+	UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase	NA	NA	NA	NA	NA
WP_105184212.1|491702_492785_+	FtsQ-type POTRA domain-containing protein	NA	NA	NA	NA	NA
WP_105184211.1|492937_494317_+	cell division protein FtsA	NA	NA	NA	NA	NA
WP_105116171.1|494342_495572_+	cell division protein FtsZ	NA	NA	NA	NA	NA
WP_105116170.1|495578_496250_+	YggS family pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_105116169.1|496266_496830_+	cell division protein SepF	NA	NA	NA	NA	NA
WP_002943042.1|496834_497098_+	YggT family protein	NA	NA	NA	NA	NA
WP_074391568.1|497100_497892_+	RNA-binding protein	NA	NA	NA	NA	NA
WP_024385043.1|497900_498590_+	DivIVA domain-containing protein	NA	NA	NA	NA	NA
WP_105184210.1|498822_499263_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_105184209.1|499274_502064_+|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	25.6	5.8e-88
WP_105184208.1|502297_502606_-	DUF1827 family protein	NA	NA	NA	NA	NA
WP_002938708.1|502660_503122_-	NUDIX hydrolase	NA	NA	NA	NA	NA
WP_015646546.1|503307_505536_-|protease	ATP-dependent Clp protease ATP-binding subunit	protease	K4FB40	Cronobacter_phage	40.4	5.6e-126
WP_002938704.1|505758_505989_+	DUF1797 family protein	NA	NA	NA	NA	NA
WP_002938702.1|506114_506804_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_002943067.1|506796_507531_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	41.1	6.1e-37
WP_024385039.1|507764_508613_+	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase	NA	A0A249XZQ2	Enterococcus_phage	42.0	8.0e-41
WP_105184207.1|508855_511045_+	YSIRK-type signal peptide-containing protein	NA	NA	NA	NA	NA
WP_024406967.1|511205_511604_+	hypothetical protein	NA	NA	NA	NA	NA
WP_162564090.1|511972_513265_-|transposase	IS110 family transposase	transposase	A0A1X9I619	Streptococcus_phage	95.0	2.9e-215
WP_112435115.1|513506_516554_+	hypothetical protein	NA	NA	NA	NA	NA
WP_105183697.1|516816_517524_-	hypothetical protein	NA	NA	NA	NA	NA
WP_105183696.1|519149_521129_+	M13 family metallopeptidase	NA	E3T4I7	Cafeteria_roenbergensis_virus	29.2	1.6e-71
WP_105183695.1|521263_522673_+	LPXTG cell wall anchor domain-containing protein	NA	NA	NA	NA	NA
WP_029694000.1|523454_524162_-|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_024385031.1|524325_524970_+	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	35.2	1.5e-28
WP_105183694.1|524972_526331_+	HAMP domain-containing histidine kinase	NA	NA	NA	NA	NA
WP_024385029.1|526625_527171_+	isoprenylcysteine carboxyl methyltransferase family protein	NA	NA	NA	NA	NA
WP_105183693.1|527380_530431_+	LPXTG cell wall anchor domain-containing protein	NA	NA	NA	NA	NA
WP_162564090.1|530692_531985_-|transposase	IS110 family transposase	transposase	A0A1X9I619	Streptococcus_phage	95.0	2.9e-215
>prophage 2
NZ_CP017666	Streptococcus suis strain 0061 chromosome, complete genome	2138420	638806	656099	2138420		Streptococcus_phage(85.71%)	16	NA	NA
WP_044668080.1|638806_639829_+	phosphate starvation-inducible protein PhoH	NA	W8D063	Erwinia_phage	48.6	1.9e-49
WP_105151188.1|639818_640322_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_024407523.1|640367_641006_-	MBL fold metallo-hydrolase	NA	A0A1X9I5D3	Streptococcus_phage	97.6	8.2e-123
WP_029171876.1|641068_643582_+	bifunctional DnaQ family exonuclease/ATP-dependent helicase	NA	A0A1X9I5C8	Streptococcus_phage	98.1	0.0e+00
WP_024393632.1|643730_644807_+	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	99.4	6.7e-194
WP_105183729.1|644871_646110_+	glutamate-5-semialdehyde dehydrogenase	NA	A0A1X9I5D4	Streptococcus_phage	94.9	8.2e-212
WP_105183728.1|646119_646905_+	pyrroline-5-carboxylate reductase	NA	A0A1X9I6T5	Streptococcus_phage	94.6	8.5e-130
WP_014736032.1|646928_647333_-	TetR/AcrR family transcriptional regulator	NA	A0A1X9I6A2	Streptococcus_phage	97.0	1.8e-62
WP_105183727.1|647459_648311_+	DegV family protein	NA	A0A1X9I5J4	Streptococcus_phage	98.6	3.9e-152
WP_029171873.1|648409_649669_-	PLP-dependent aminotransferase family protein	NA	A0A1X9I5H2	Streptococcus_phage	99.0	2.5e-240
WP_105183726.1|649791_650526_+	peroxide stress protein YaaA	NA	A0A1X9I5I0	Streptococcus_phage	97.7	5.4e-118
WP_105183725.1|650627_652073_+	LCP family protein	NA	A0A1X9I5X1	Streptococcus_phage	80.7	8.5e-176
WP_024407531.1|652088_652778_+	capsular biosynthesis protein CpsC	NA	A0A1X9I5E1	Streptococcus_phage	94.3	4.6e-111
WP_105183724.1|652787_653471_+	tyrosine-protein kinase	NA	A0A1X9I5D6	Streptococcus_phage	94.4	4.7e-108
WP_105183723.1|653511_654243_+	tyrosine protein phosphatase	NA	NA	NA	NA	NA
WP_105183722.1|654272_656099_+	polysaccharide biosynthesis protein	NA	A0A1V0SAI8	Catovirus	28.1	3.0e-24
>prophage 3
NZ_CP017666	Streptococcus suis strain 0061 chromosome, complete genome	2138420	788138	805663	2138420	integrase	Streptococcus_phage(100.0%)	20	793296:793310	816440:816454
WP_000420682.1|788138_788453_+	YdcP family protein	NA	A0A1S5SF38	Streptococcus_phage	100.0	5.2e-54
WP_000985015.1|788468_788855_+	YdcP family protein	NA	A0A1S5SF96	Streptococcus_phage	100.0	3.0e-64
WP_000813488.1|788883_790269_+	DNA translocase FtsK	NA	A0A1S5SFB5	Streptococcus_phage	100.0	1.1e-265
WP_000879507.1|790271_790424_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000398284.1|790446_791652_+	XRE family transcriptional regulator	NA	A0A1S5SEX3	Streptococcus_phage	100.0	2.8e-233
WP_001009056.1|791694_791916_+	hypothetical protein	NA	A0A1S5SEY0	Streptococcus_phage	100.0	4.3e-31
WP_000342539.1|792032_792530_+	antirestriction protein ArdA	NA	A0A1S5SF25	Streptococcus_phage	100.0	1.7e-91
WP_000506270.1|792504_793011_+	conjugal transfer protein	NA	A0A1S5SEX7	Streptococcus_phage	100.0	8.6e-91
WP_000331160.1|792994_795442_+	ATP-binding protein	NA	A0A1S5SF64	Streptococcus_phage	100.0	0.0e+00
793296:793310	attL	CCATGATTGGCGAAA	NA	NA	NA	NA
WP_000804748.1|795444_797622_+	membrane protein	NA	A0A1S5SF30	Streptococcus_phage	100.0	0.0e+00
WP_000769868.1|797618_798620_+	peptidase P60	NA	A0A1S5SEZ8	Streptococcus_phage	100.0	5.0e-191
WP_001224320.1|798616_799552_+	conjugal transfer protein	NA	A0A1S5SF22	Streptococcus_phage	99.0	7.7e-170
WP_001814923.1|799796_799913_+	tetracycline resistance determinant leader peptide	NA	NA	NA	NA	NA
WP_105184076.1|799928_801848_+	tetracycline resistance ribosomal protection protein Tet(M)	NA	A0A1S5SF82	Streptococcus_phage	96.4	0.0e+00
WP_000336323.1|801966_802134_+	conjugal transfer protein	NA	D0R0F6	Streptococcus_phage	68.0	1.6e-14
WP_001227347.1|802193_802547_-	helix-turn-helix transcriptional regulator	NA	A0A1S5SFA6	Streptococcus_phage	100.0	1.3e-58
WP_000804885.1|803050_803473_+	sigma-70 family RNA polymerase sigma factor	NA	A0A1S5SEW0	Streptococcus_phage	100.0	2.5e-72
WP_000857133.1|803469_803700_+	helix-turn-helix domain-containing protein	NA	A0A1S5SEX1	Streptococcus_phage	100.0	2.7e-36
WP_000814511.1|804160_804364_+	excisionase	NA	A0A1S5SF07	Streptococcus_phage	100.0	4.0e-31
WP_001291561.1|804445_805663_+|integrase	tyrosine-type recombinase/integrase	integrase	A0A1S5SEW7	Streptococcus_phage	100.0	3.7e-233
816440:816454	attR	CCATGATTGGCGAAA	NA	NA	NA	NA
>prophage 4
NZ_CP017666	Streptococcus suis strain 0061 chromosome, complete genome	2138420	1337858	1396164	2138420	tRNA,protease,holin,transposase	Streptococcus_phage(66.67%)	58	NA	NA
WP_105183941.1|1337858_1338533_-|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_105183942.1|1338542_1338860_-	hypothetical protein	NA	NA	NA	NA	NA
WP_105183943.1|1338869_1339559_-|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_024401163.1|1339584_1339770_-	hypothetical protein	NA	NA	NA	NA	NA
WP_105183944.1|1339789_1340299_-	DUF3278 domain-containing protein	NA	NA	NA	NA	NA
WP_024410970.1|1340329_1341088_-	DUF3169 family protein	NA	NA	NA	NA	NA
WP_014637779.1|1341084_1341300_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_105183945.1|1341312_1341879_-	DUF3267 domain-containing protein	NA	NA	NA	NA	NA
WP_112435148.1|1342014_1342236_-	hypothetical protein	NA	NA	NA	NA	NA
WP_029743867.1|1342258_1342447_-	hypothetical protein	NA	NA	NA	NA	NA
WP_105183946.1|1342660_1345279_-|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	34.5	7.9e-63
WP_024395879.1|1345576_1346062_-	UDP-N-acetylenolpyruvoylglucosamine reductase	NA	NA	NA	NA	NA
WP_105183947.1|1346423_1347425_-	peptidylprolyl isomerase PrsA	NA	NA	NA	NA	NA
WP_105183953.1|1347487_1348207_-	O-methyltransferase	NA	NA	NA	NA	NA
WP_024384845.1|1348281_1348830_-	hypothetical protein	NA	NA	NA	NA	NA
WP_105183948.1|1348840_1349284_-	hypothetical protein	NA	NA	NA	NA	NA
WP_105183949.1|1349285_1351088_-	oligoendopeptidase F	NA	NA	NA	NA	NA
WP_105183950.1|1351160_1351796_-	hypothetical protein	NA	NA	NA	NA	NA
WP_105183951.1|1351837_1352779_-	competence protein CoiA	NA	NA	NA	NA	NA
WP_105183952.1|1352840_1353407_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_105137943.1|1353541_1354798_+|transposase	ISL3 family transposase	transposase	A0A1S5SBP9	Streptococcus_phage	72.9	1.1e-171
WP_105183676.1|1354857_1356861_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SEZ7	Hokovirus	30.8	1.9e-85
WP_105183677.1|1357101_1357824_-	hypothetical protein	NA	NA	NA	NA	NA
WP_105183678.1|1358157_1361256_-	DEAD/DEAH box helicase family protein	NA	A0A2K5B2C2	Erysipelothrix_phage	34.9	2.4e-135
WP_105183679.1|1361252_1361741_-	hypothetical protein	NA	NA	NA	NA	NA
WP_162646225.1|1361744_1363691_-	site-specific DNA-methyltransferase	NA	A0A2K5B2C1	Erysipelothrix_phage	37.1	6.9e-96
WP_079268339.1|1363959_1364067_-|holin	putative holin-like toxin	holin	NA	NA	NA	NA
WP_105183681.1|1364352_1365063_-	DUF4391 family protein	NA	NA	NA	NA	NA
WP_029171347.1|1365064_1368301_-	DEAD/DEAH box helicase family protein	NA	A0A2K5B2B9	Erysipelothrix_phage	40.7	3.4e-209
WP_105119658.1|1368358_1368970_-	DUF3885 domain-containing protein	NA	NA	NA	NA	NA
WP_105119659.1|1369092_1369968_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_105119660.1|1369985_1370822_-	DUF975 family protein	NA	NA	NA	NA	NA
WP_029171344.1|1371014_1371896_-	DUF975 family protein	NA	NA	NA	NA	NA
WP_029179003.1|1372018_1373407_-	amino acid permease	NA	NA	NA	NA	NA
WP_105119661.1|1373566_1375228_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012775042.1|1375383_1376211_+	exodeoxyribonuclease III	NA	M1PSC0	Streptococcus_phage	100.0	2.9e-152
WP_105183682.1|1376502_1377402_+	cation transporter	NA	M1Q1N9	Streptococcus_phage	98.3	1.6e-161
WP_002935368.1|1377418_1377772_-	arsenate reductase family protein	NA	M1PLC0	Streptococcus_phage	100.0	1.9e-60
WP_105183683.1|1377755_1378262_-	methylated-DNA--[protein]-cysteine S-methyltransferase	NA	M1PFU9	Streptococcus_phage	97.0	2.0e-92
WP_105134758.1|1378264_1379446_-	phosphoglycerate dehydrogenase	NA	M1NSB9	Streptococcus_phage	99.7	1.6e-220
WP_105119664.1|1379814_1380372_-	GNAT family N-acetyltransferase	NA	M1PSC3	Streptococcus_phage	95.1	7.0e-94
WP_015646952.1|1380371_1381463_-	3-phosphoserine/phosphohydroxythreonine transaminase	NA	M1Q1P2	Streptococcus_phage	99.7	7.0e-207
WP_105183684.1|1381818_1382682_-	16S rRNA (cytidine(1402)-2'-O)-methyltransferase	NA	M1PLC5	Streptococcus_phage	99.0	4.0e-157
WP_002935361.1|1382683_1383001_-	DNA replication initiation control protein YabA	NA	M1PFV3	Streptococcus_phage	100.0	3.1e-54
WP_105183685.1|1383020_1383905_-	DNA polymerase III subunit delta'	NA	M1NSC1	Streptococcus_phage	99.0	6.6e-155
WP_105183686.1|1383901_1384540_-	dTMP kinase	NA	M1PSC7	Streptococcus_phage	98.1	1.3e-112
WP_105104801.1|1385065_1385932_+	YitT family protein	NA	M1Q1P6	Streptococcus_phage	99.3	2.3e-152
WP_105119667.1|1385969_1387241_-	toxic anion resistance protein	NA	M1PLC8	Streptococcus_phage	100.0	3.8e-212
WP_105119668.1|1387246_1388074_-	hypothetical protein	NA	M1PFV6	Streptococcus_phage	97.5	1.3e-131
WP_002935353.1|1388167_1388824_-	CBS domain-containing protein	NA	M1NSC5	Streptococcus_phage	99.1	2.1e-113
WP_024384875.1|1388907_1389663_-	epoxyqueuosine reductase QueH	NA	NA	NA	NA	NA
WP_002937288.1|1390361_1391072_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	27.7	2.6e-16
WP_002937291.1|1391071_1391836_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	26.3	2.8e-16
WP_002937293.1|1391835_1392783_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_044671020.1|1392785_1393673_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_024386220.1|1393873_1395043_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_002937299.1|1395174_1395447_-	YlbG family protein	NA	NA	NA	NA	NA
WP_002937303.1|1395573_1396164_-|protease	ATP-dependent Clp protease proteolytic subunit	protease	A0A223W000	Agrobacterium_phage	56.7	1.5e-54
