assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_003269465.1_ASM326946v1	NZ_CP030110	Enterococcus faecium strain BM4105-RF chromosome, complete genome	1	334524-335086	1,1,1	PILER-CR,CRISPRCasFinder,CRT	no	cas9,cas1,cas2,csn2	cas3,cas9,cas1,cas2,csn2,DEDDh,csa3,DinG,cas14j	Type II-C,Type II-B,Type II-A	GTTTTAGAGCTATGCTGATTTGAATGCTTCCAAAAC,GTTTTAGAGCTATGCTGATTTGAATGCTTCCAAAAC,GTTTTAGAGCTATGCTGATTTGAATGCTTCCAAAAC	36,36,36	1	1	334560-334589	NZ_CP030110.1_931190-931161	II-A:II-A:II-A	7,8,8	8	TypeII-C,TypeII-B,TypeII-A	cas3,cas9,cas1,cas2,csn2,DEDDh,csa3,DinG,cas14j	NA|287aa|up_7|NZ_CP030110.1_324754_325615_+,NA|43aa|up_5|NZ_CP030110.1_327899_328028_-,NA|66aa|up_4|NZ_CP030110.1_328344_328542_+,NA	NA|378aa|up_9|NZ_CP030110.1_322264_323398_-	cd08283, FDH_like_1, Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1	NA|320aa|up_8|NZ_CP030110.1_323647_324607_+	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]	NA|287aa|up_7|NZ_CP030110.1_324754_325615_+	NA	NA|565aa|up_6|NZ_CP030110.1_326148_327843_-	PRK13977, PRK13977, myosin-cross-reactive antigen; Provisional	NA|43aa|up_5|NZ_CP030110.1_327899_328028_-	NA	NA|66aa|up_4|NZ_CP030110.1_328344_328542_+	NA	cas9|1341aa|up_3|NZ_CP030110.1_328550_332573_+	COG3513, COG3513, Predicted CRISPR-associated nuclease, contains McrA/HNH-nuclease and RuvC-like nuclease domain [Defense mechanisms]	cas1|289aa|up_2|NZ_CP030110.1_332573_333440_+	TIGR03639, cas1_NMENI, CRISPR-associated endonuclease Cas1, subtype II/NMENI	cas2|115aa|up_1|NZ_CP030110.1_333436_333781_+	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	csn2|221aa|up_0|NZ_CP030110.1_333770_334433_+	cd09758, Csn2, CRISPR/Cas system-associated protein Csn2	NA|122aa|down_0|NZ_CP030110.1_335256_335622_+	pfam07784, DUF1622, Protein of unknown function (DUF1622)	NA|122aa|down_1|NZ_CP030110.1_335618_335984_+	pfam07784, DUF1622, Protein of unknown function (DUF1622)	NA|476aa|down_2|NZ_CP030110.1_336144_337572_-	pfam08280, HTH_Mga, M protein trans-acting positive regulator (MGA) HTH domain	NA|851aa|down_3|NZ_CP030110.1_338276_340829_+	cd02080, P-type_ATPase_cation, P-type cation-transporting ATPase similar to Exiguobacterium aurantiacum Mna, an Na(+)-ATPase, and Synechocystis sp	NA|480aa|down_4|NZ_CP030110.1_340835_342275_-	pfam18333, ssDNA_DBD, Non-canonical single-stranded DNA-binding domain	NA|121aa|down_5|NZ_CP030110.1_342418_342781_+	COG2315, MmcQ, Uncharacterized protein conserved in bacteria [Function unknown]	NA|286aa|down_6|NZ_CP030110.1_342968_343826_-	COG0583, LysR, Transcriptional regulator [Transcription]	NA|304aa|down_7|NZ_CP030110.1_343945_344857_+	TIGR03131, malonate_mdcH, malonate decarboxylase, epsilon subunit	NA|549aa|down_8|NZ_CP030110.1_344863_346510_+	pfam16957, Mal_decarbox_Al, Malonate decarboxylase, alpha subunit, transporter	NA|100aa|down_9|NZ_CP030110.1_346611_346911_+	TIGR03130, malonate_delta, malonate decarboxylase acyl carrier protein
GCF_003269465.1_ASM326946v1	NZ_CP030110	Enterococcus faecium strain BM4105-RF chromosome, complete genome	2	1123733-1123836	2	CRISPRCasFinder	no		cas3,cas9,cas1,cas2,csn2,DEDDh,csa3,DinG,cas14j	Orphan	AGTTTTAGATCTATGTTAATTTGAATGATACCAAATCC	38	0	0	NA	NA	II-A,II-B	1	1	Orphan	cas3,cas9,cas1,cas2,csn2,DEDDh,csa3,DinG,cas14j	NA|237aa|up_6|NZ_CP030110.1_1115008_1115719_-,NA|148aa|up_2|NZ_CP030110.1_1119800_1120244_+,NA|75aa|down_3|NZ_CP030110.1_1129470_1129695_+,NA|76aa|down_8|NZ_CP030110.1_1135700_1135928_+,NA|180aa|down_9|NZ_CP030110.1_1135924_1136464_+	NA|123aa|up_9|NZ_CP030110.1_1112846_1113215_-	COG5646, COG5646, Uncharacterized conserved protein [Function unknown]	NA|165aa|up_8|NZ_CP030110.1_1113364_1113859_+	cd04335, PrdX_deacylase, This CD includes bacterial (Agrobacterium tumefaciens and Caulobacter crescentus ProX, and Clostridium sticklandii PrdX) and eukaryotic (Plasmodium falciparum N-terminal ProRS editing domain) sequences	NA|337aa|up_7|NZ_CP030110.1_1113882_1114893_+	cd07062, Peptidase_S66_mccF_like, Microcin C7 self-immunity protein determines resistance to exogenous microcin C7	NA|237aa|up_6|NZ_CP030110.1_1115008_1115719_-	NA	NA|530aa|up_5|NZ_CP030110.1_1115982_1117572_+	TIGR02005, PTS-IIBC-alpha, PTS system, alpha-glucoside-specific IIBC component	NA|444aa|up_4|NZ_CP030110.1_1117616_1118948_+	cd05298, GH4_GlvA_pagL_like, Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases	NA|256aa|up_3|NZ_CP030110.1_1119032_1119800_+	COG1737, RpiR, Transcriptional regulators [Transcription]	NA|148aa|up_2|NZ_CP030110.1_1119800_1120244_+	NA	NA|197aa|up_1|NZ_CP030110.1_1120452_1121043_-	cd03140, GATase1_PfpI_3, Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus	NA|320aa|up_0|NZ_CP030110.1_1121719_1122679_-	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]	NA|426aa|down_0|NZ_CP030110.1_1123878_1125156_+	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type	NA|1028aa|down_1|NZ_CP030110.1_1125279_1128363_+	COG4932, COG4932, Predicted outer membrane protein [Cell envelope biogenesis, outer membrane]	NA|328aa|down_2|NZ_CP030110.1_1128483_1129467_+	pfam12642, TpcC, Conjugative transposon protein TcpC	NA|75aa|down_3|NZ_CP030110.1_1129470_1129695_+	NA	NA|130aa|down_4|NZ_CP030110.1_1129704_1130094_+	pfam12648, TcpE, TcpE family	NA|835aa|down_5|NZ_CP030110.1_1130113_1132618_+	pfam12846, AAA_10, AAA-like domain	NA|654aa|down_6|NZ_CP030110.1_1132632_1134594_+	COG5271, MDN1, AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]	NA|345aa|down_7|NZ_CP030110.1_1134651_1135686_+	pfam18013, Phage_lysozyme2, Phage tail lysozyme	NA|76aa|down_8|NZ_CP030110.1_1135700_1135928_+	NA	NA|180aa|down_9|NZ_CP030110.1_1135924_1136464_+	NA
GCF_003269465.1_ASM326946v1	NZ_CP030110	Enterococcus faecium strain BM4105-RF chromosome, complete genome	3	1695214-1695307	3	CRISPRCasFinder	no		cas3,cas9,cas1,cas2,csn2,DEDDh,csa3,DinG,cas14j	Orphan	TGAGGAAGAAGGTGTTGTTTCTGCTGCA	28	0	0	NA	NA	NA	1	1	Orphan	cas3,cas9,cas1,cas2,csn2,DEDDh,csa3,DinG,cas14j	NA|349aa|up_4|NZ_CP030110.1_1689675_1690722_-,NA	NA|403aa|up_9|NZ_CP030110.1_1685071_1686280_-	PRK13299, PRK13299, tRNA CCA-pyrophosphorylase; Provisional	NA|111aa|up_8|NZ_CP030110.1_1686390_1686723_-	cd11531, NTP-PPase_BsYpjD, Nucleoside Triphosphate Pyrophosphohydrolase (EC 3	NA|292aa|up_7|NZ_CP030110.1_1686870_1687746_+	COG1284, COG1284, Uncharacterized conserved protein [Function unknown]	NA|194aa|up_6|NZ_CP030110.1_1687827_1688409_-	PRK03636, PRK03636, hypothetical protein; Provisional	NA|420aa|up_5|NZ_CP030110.1_1688414_1689674_-	TIGR02917, TPR_domain_protein, putative PEP-CTERM system TPR-repeat lipoprotein	NA|349aa|up_4|NZ_CP030110.1_1689675_1690722_-	NA	NA|92aa|up_3|NZ_CP030110.1_1690954_1691230_-	cd13831, HU, histone-like DNA-binding protein HU	NA|437aa|up_2|NZ_CP030110.1_1691472_1692783_-	PRK00093, PRK00093, GTP-binding protein Der; Reviewed	NA|410aa|up_1|NZ_CP030110.1_1692964_1694194_-	PRK06676, rpsA, 30S ribosomal protein S1; Reviewed	NA|227aa|up_0|NZ_CP030110.1_1694328_1695009_-	PRK00023, cmk, (d)CMP kinase	NA|468aa|down_0|NZ_CP030110.1_1695758_1697162_-	COG0514, RecQ, Superfamily II DNA helicase [DNA replication, recombination, and repair]	NA|344aa|down_1|NZ_CP030110.1_1697148_1698180_-	COG4955, COG4955, Uncharacterized protein conserved in bacteria [Function unknown]	NA|74aa|down_2|NZ_CP030110.1_1698210_1698432_+	COG1141, Fer, Ferredoxin [Energy production and conversion]	NA|246aa|down_3|NZ_CP030110.1_1698593_1699331_-	pfam12695, Abhydrolase_5, Alpha/beta hydrolase family	NA|447aa|down_4|NZ_CP030110.1_1699484_1700825_-	PRK07205, PRK07205, hypothetical protein; Provisional	NA|508aa|down_5|NZ_CP030110.1_1701061_1702585_-	COG1288, COG1288, Predicted membrane protein [Function unknown]	NA|204aa|down_6|NZ_CP030110.1_1702962_1703574_-	COG3601, COG3601, Predicted membrane protein [Function unknown]	NA|239aa|down_7|NZ_CP030110.1_1703903_1704620_-	COG1187, RsuA, 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases [Translation, ribosomal structure and biogenesis]	NA|192aa|down_8|NZ_CP030110.1_1704620_1705196_-	PRK00135, scpB, segregation and condensation protein B; Reviewed	NA|254aa|down_9|NZ_CP030110.1_1705179_1705941_-	PRK00104, scpA, segregation and condensation protein A; Reviewed
