The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP030110	Enterococcus faecium strain BM4105-RF chromosome, complete genome	2683778	981292	1065014	2683778	capsid,portal,plate,tRNA,protease,holin,integrase,terminase,tail,head	Enterococcus_phage(20.93%)	96	988719:988740	1032855:1032876
WP_002308731.1|981292_982054_+|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_002290284.1|982189_982537_+	50S ribosomal protein L19	NA	NA	NA	NA	NA
WP_002348534.1|982797_983091_+	DUF2087 domain-containing protein	NA	NA	NA	NA	NA
WP_002348535.1|983380_985045_+	acetolactate synthase AlsS	NA	NA	NA	NA	NA
WP_002308805.1|985057_985768_+	acetolactate decarboxylase	NA	NA	NA	NA	NA
WP_002293167.1|985896_986394_+	GAF domain-containing protein	NA	NA	NA	NA	NA
WP_002289617.1|986578_986839_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002348537.1|987251_987788_-	glycopeptide antibiotics resistance protein	NA	NA	NA	NA	NA
988719:988740	attL	TTGAATGCCATTTTGAATGCCA	NA	NA	NA	NA
WP_065763638.1|988745_989888_-|integrase	site-specific integrase	integrase	M1PRU8	Streptococcus_phage	36.9	6.3e-57
WP_065763639.1|989994_990951_-	Abi family protein	NA	X2L062	Streptococcus_phage	48.6	1.6e-82
WP_002306332.1|991141_991348_-	hypothetical protein	NA	NA	NA	NA	NA
WP_103557062.1|991371_991473_-	LysM domain-containing protein	NA	NA	NA	NA	NA
WP_065763640.1|991744_992746_-	Abi family protein	NA	A0A2H4JB40	uncultured_Caudovirales_phage	26.7	4.1e-28
WP_065763641.1|992857_993277_-	hypothetical protein	NA	NA	NA	NA	NA
WP_065763642.1|993409_994063_-	hypothetical protein	NA	NA	NA	NA	NA
WP_025479728.1|994112_994541_-	ImmA/IrrE family metallo-endopeptidase	NA	NA	NA	NA	NA
WP_065763643.1|994545_994920_-	helix-turn-helix transcriptional regulator	NA	A0A2P0ZLA1	Lactobacillus_phage	45.5	1.4e-21
WP_065763644.1|995204_995390_+	helix-turn-helix transcriptional regulator	NA	Q5YAA3	Bacillus_phage	58.3	3.8e-12
WP_065763645.1|995403_995652_+	hypothetical protein	NA	NA	NA	NA	NA
WP_065763646.1|995859_996642_-	hypothetical protein	NA	NA	NA	NA	NA
WP_065763647.1|996694_997402_+	antirepressor	NA	D2IYT0	Enterococcus_phage	56.5	2.0e-69
WP_065763648.1|997577_997919_+	hypothetical protein	NA	NA	NA	NA	NA
WP_065763649.1|997911_998643_+	DUF1071 domain-containing protein	NA	A0A2I7RDU5	Vibrio_phage	53.6	1.2e-45
WP_002333654.1|998648_999335_+	hypothetical protein	NA	C9E2N1	Enterococcus_phage	70.0	4.9e-89
WP_065763650.1|999338_1000085_+	helix-turn-helix domain-containing protein	NA	F8J194	Lactobacillus_virus	58.8	3.3e-30
WP_002293146.1|1000096_1000366_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010721325.1|1000527_1000830_+	hypothetical protein	NA	NA	NA	NA	NA
WP_065763651.1|1000826_1000988_+	antitoxin	NA	NA	NA	NA	NA
WP_080475476.1|1000984_1001296_+	hypothetical protein	NA	NA	NA	NA	NA
WP_080475477.1|1001398_1001929_+	hypothetical protein	NA	A0A0S2MYJ7	Enterococcus_phage	59.3	3.7e-52
WP_080475478.1|1002098_1002716_+	DUF1642 domain-containing protein	NA	A0A141E1K4	Streptococcus_phage	34.9	5.1e-13
WP_065763654.1|1002712_1003009_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010729117.1|1003084_1003501_+	ArpU family phage transcriptional regulator	NA	C9E2P5	Enterococcus_phage	67.4	1.4e-46
WP_065763655.1|1003776_1004415_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002342126.1|1004899_1005085_+	hypothetical protein	NA	F0PII8	Enterococcus_phage	82.0	5.8e-21
WP_002342127.1|1005077_1005341_+	hypothetical protein	NA	A0A0S2MYE7	Enterococcus_phage	74.7	1.6e-32
WP_065763656.1|1005381_1005609_+	hypothetical protein	NA	NA	NA	NA	NA
WP_065763657.1|1005605_1005893_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002337263.1|1006422_1006737_+	HNH endonuclease	NA	A0A0K2CYS9	Paenibacillus_phage	43.8	5.2e-14
WP_002318055.1|1007024_1007615_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010861569.1|1007666_1008122_+|terminase	phage terminase small subunit P27 family	terminase	A6M947	Geobacillus_virus	32.9	3.1e-15
WP_065763658.1|1008112_1009903_+|terminase	terminase large subunit	terminase	A0A1B1P7R3	Bacillus_phage	55.8	5.9e-195
WP_016631239.1|1009902_1011138_+|portal	phage portal protein	portal	A0A0U3SQF0	Bacillus_phage	53.8	5.6e-120
WP_002318059.1|1011172_1011898_+|protease	Clp protease ClpP	protease	A0A0B5A796	Paenibacillus_phage	57.8	3.7e-71
WP_065763659.1|1011898_1013035_+|capsid	phage major capsid protein	capsid	A0A0C5AEH1	Paenibacillus_phage	65.9	4.8e-134
WP_065763660.1|1013108_1013471_+|head,tail	phage gp6-like head-tail connector protein	head,tail	NA	NA	NA	NA
WP_080475479.1|1013448_1013811_+|head,tail	phage head-tail adapter protein	head,tail	A0A059T6F2	Listeria_phage	53.3	9.0e-26
WP_065763661.1|1013803_1014208_+	hypothetical protein	NA	A0A2H4J7V9	uncultured_Caudovirales_phage	37.9	9.1e-19
WP_002371758.1|1014204_1014615_+	hypothetical protein	NA	A0A059T681	Listeria_phage	47.2	3.1e-22
WP_047927163.1|1014675_1015263_+|tail	phage tail protein	tail	A0A2P0ZLF5	Lactobacillus_phage	41.0	2.7e-35
WP_065763662.1|1015335_1015803_+	Ig domain-containing protein	NA	A5GYM0	Lactococcus_phage	52.6	1.6e-06
WP_002337251.1|1015848_1016157_+	hypothetical protein	NA	NA	NA	NA	NA
WP_065763663.1|1016351_1022987_+|tail	phage tail tape measure protein	tail	M1PKM6	Streptococcus_phage	42.2	5.0e-130
WP_065763664.1|1022990_1023812_+|tail	phage tail family protein	tail	Q9T1A6	Listeria_phage	44.6	2.2e-56
WP_065763665.1|1023820_1024864_+	hypothetical protein	NA	Q9T1A5	Listeria_phage	54.4	5.7e-105
WP_065763666.1|1024863_1025913_+	hypothetical protein	NA	Q9T1A4	Listeria_phage	31.9	1.0e-21
WP_065763667.1|1025912_1028186_+|plate	BppU family phage baseplate upper protein	plate	A0A0M4RT83	Enterococcus_phage	42.1	2.5e-65
WP_065763668.1|1028204_1028651_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002298029.1|1028652_1028790_+	XkdX family protein	NA	NA	NA	NA	NA
WP_002306392.1|1028827_1029121_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002334690.1|1029143_1029341_+|holin	holin	holin	A0A0S2MYF6	Enterococcus_phage	82.8	8.6e-23
WP_065763669.1|1029351_1030371_+	N-acetylmuramoyl-L-alanine amidase	NA	A0A1G5SA77	Enterococcus_phage	66.1	4.1e-60
WP_065763670.1|1030560_1031586_-	hypothetical protein	NA	NA	NA	NA	NA
WP_065763671.1|1032450_1032753_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002290402.1|1033508_1034282_-	Cof-type HAD-IIB family hydrolase	NA	NA	NA	NA	NA
1032855:1032876	attR	TTGAATGCCATTTTGAATGCCA	NA	NA	NA	NA
WP_002308810.1|1034425_1034776_+	SdpI family protein	NA	NA	NA	NA	NA
WP_002290404.1|1034756_1035473_+	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	36.2	6.1e-34
WP_002313582.1|1035472_1036921_+	HAMP domain-containing histidine kinase	NA	A0A1V0SGX0	Hokovirus	29.8	6.0e-20
WP_002308814.1|1036993_1037503_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002316381.1|1037492_1038218_-	FtsX-like permease family protein	NA	NA	NA	NA	NA
WP_002308821.1|1038389_1040510_-	LTA synthase family protein	NA	W6LM83	Streptococcus_phage	58.4	7.5e-221
WP_002308823.1|1040738_1041917_+	class I SAM-dependent rRNA methyltransferase	NA	W6LLI2	Streptococcus_phage	49.2	6.0e-103
WP_002313585.1|1041932_1042685_+	type I 3-dehydroquinate dehydratase	NA	W6LP76	Streptococcus_phage	35.9	1.3e-26
WP_002290411.1|1042707_1043193_+|tRNA	Cys-tRNA(Pro) deacylase	tRNA	NA	NA	NA	NA
WP_002336491.1|1043263_1044517_-	NAD(P)/FAD-dependent oxidoreductase	NA	A0A2H4PQX1	Staphylococcus_phage	55.3	1.7e-23
WP_002308828.1|1044633_1045983_+	NADP-specific glutamate dehydrogenase	NA	NA	NA	NA	NA
WP_002290415.1|1046094_1047441_+	glucose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_002308846.1|1047741_1048128_-	YxeA family protein	NA	NA	NA	NA	NA
WP_002308849.1|1048993_1049206_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002313630.1|1049483_1051283_-	glycerophosphoryl diester phosphodiesterase	NA	I6XE30	Staphylococcus_phage	27.3	6.3e-11
WP_002329369.1|1051409_1052006_-	TVP38/TMEM64 family protein	NA	M1Q152	Streptococcus_phage	41.1	4.3e-33
WP_002308852.1|1052376_1052721_+	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA	NA
WP_002308853.1|1052721_1053141_+	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_002308854.1|1053230_1053584_-	hypothetical protein	NA	NA	NA	NA	NA
WP_065763672.1|1053549_1054881_-	DUF1576 domain-containing protein	NA	NA	NA	NA	NA
WP_002308856.1|1055136_1055703_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_065763673.1|1056224_1058120_+	asparagine synthase (glutamine-hydrolyzing)	NA	F2Y2L7	Organic_Lake_phycodnavirus	26.2	3.5e-20
WP_002308858.1|1058201_1058648_-	DUF2188 domain-containing protein	NA	NA	NA	NA	NA
WP_002296119.1|1058875_1059025_+	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_002308859.1|1059112_1059631_+	dihydrofolate reductase	NA	G3MBI7	Bacillus_virus	39.1	5.4e-24
WP_002345988.1|1059704_1060661_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_065763674.1|1060826_1061633_+	ABC transporter ATP-binding protein	NA	A0A1V0SJ29	Klosneuvirus	30.0	7.9e-14
WP_002313633.1|1061629_1062619_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_002345986.1|1062615_1063620_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_002313635.1|1063753_1064296_+	5-formyltetrahydrofolate cyclo-ligase	NA	NA	NA	NA	NA
WP_002308868.1|1064315_1065014_+|protease	rhomboid family intramembrane serine protease	protease	NA	NA	NA	NA
>prophage 2
NZ_CP030110	Enterococcus faecium strain BM4105-RF chromosome, complete genome	2683778	1596797	1605836	2683778		Synechococcus_phage(16.67%)	9	NA	NA
WP_002309479.1|1596797_1597376_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	36.9	1.3e-26
WP_033627216.1|1597372_1598416_-	phosphoribosylformylglycinamidine cyclo-ligase	NA	A0A1D7SE90	Cyanophage	43.9	2.9e-61
WP_002313844.1|1598447_1599887_-	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	33.3	1.8e-53
WP_002313845.1|1599871_1602094_-	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	41.6	1.6e-152
WP_002313846.1|1602094_1602766_-	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA	NA
WP_002309490.1|1602767_1603022_-	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
WP_002309491.1|1603021_1603750_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	E3SPA9	Prochlorococcus_phage	40.9	1.1e-41
WP_002309492.1|1604005_1604383_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002306865.1|1604540_1605836_-	adenylosuccinate lyase	NA	A0A1B3B081	Gordonia_phage	33.1	1.0e-18
>prophage 3
NZ_CP030110	Enterococcus faecium strain BM4105-RF chromosome, complete genome	2683778	2009894	2018366	2683778		Streptococcus_phage(66.67%)	9	NA	NA
WP_002292349.1|2009894_2012084_+	anaerobic ribonucleoside-triphosphate reductase	NA	A0A0C5KKX3	Enterococcus_phage	66.7	6.8e-286
WP_002292348.1|2012398_2013001_+	anaerobic ribonucleoside-triphosphate reductase activating protein	NA	A0A288TZV3	Enterococcus_phage	58.0	4.9e-53
WP_002346307.1|2013054_2014176_-	DNA polymerase IV	NA	NA	NA	NA	NA
WP_002310240.1|2014284_2015157_-	16S rRNA (cytidine(1402)-2'-O)-methyltransferase	NA	M1PLC5	Streptococcus_phage	60.4	9.6e-90
WP_002288076.1|2015225_2015573_-	DNA replication initiation control protein YabA	NA	M1PFV3	Streptococcus_phage	41.1	5.1e-18
WP_002335412.1|2015565_2016390_-	stage 0 sporulation family protein	NA	NA	NA	NA	NA
WP_065763740.1|2016425_2017364_-	DNA polymerase III subunit delta'	NA	M1NSC1	Streptococcus_phage	33.4	2.3e-33
WP_002292340.1|2017377_2017707_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002292339.1|2017721_2018366_-	dTMP kinase	NA	M1PSC7	Streptococcus_phage	52.6	4.2e-58
