assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_003264815.1_ASM326481v1	NZ_CP027788	Staphylococcus aureus strain CMRSA-6 chromosome, complete genome	1	479067-479167	1	CRISPRCasFinder	no		csa3,cas3,DEDDh,DinG,WYL	Orphan	TTATGAATTGAGTATTAAATTTG	23	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,DEDDh,DinG,WYL	NA|70aa|up_9|NZ_CP027788.1_470639_470849_-,NA|128aa|up_7|NZ_CP027788.1_471673_472057_-,NA|98aa|up_5|NZ_CP027788.1_473010_473304_-,NA|34aa|up_0|NZ_CP027788.1_478291_478393_+,NA|221aa|down_1|NZ_CP027788.1_480257_480920_-	NA|70aa|up_9|NZ_CP027788.1_470639_470849_-	NA	NA|194aa|up_8|NZ_CP027788.1_471026_471608_+	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]	NA|128aa|up_7|NZ_CP027788.1_471673_472057_-	NA	NA|209aa|up_6|NZ_CP027788.1_472311_472938_-	NF033193, lipo_NDxxF, NDxxF motif lipoprotein	NA|98aa|up_5|NZ_CP027788.1_473010_473304_-	NA	NA|508aa|up_4|NZ_CP027788.1_473382_474906_-	PRK15317, PRK15317, alkyl hydroperoxide reductase subunit F; Provisional	NA|190aa|up_3|NZ_CP027788.1_474921_475491_-	TIGR03137, AhpC, peroxiredoxin	NA|252aa|up_2|NZ_CP027788.1_475982_476738_+	cd02146, NfsA-like, nitroreductase similar to Escherichia coli NfsA	NA|463aa|up_1|NZ_CP027788.1_476818_478207_-	COG1823, COG1823, Predicted Na+/dicarboxylate symporter [General function prediction only]	NA|34aa|up_0|NZ_CP027788.1_478291_478393_+	NA	NA|319aa|down_0|NZ_CP027788.1_479183_480140_-	PRK05035, PRK05035, electron transport complex protein RnfC; Provisional	NA|221aa|down_1|NZ_CP027788.1_480257_480920_-	NA	NA|136aa|down_2|NZ_CP027788.1_481062_481470_-	pfam11181, YflT, Heat induced stress protein YflT	NA|193aa|down_3|NZ_CP027788.1_481982_482561_+	PRK09219, PRK09219, xanthine phosphoribosyltransferase; Validated	NA|423aa|down_4|NZ_CP027788.1_482560_483829_+	TIGR03173, pbuX, xanthine permease	NA|489aa|down_5|NZ_CP027788.1_483866_485333_+	PRK05567, PRK05567, inosine 5'-monophosphate dehydrogenase; Reviewed	NA|514aa|down_6|NZ_CP027788.1_485357_486899_+	PRK00074, guaA, GMP synthase; Reviewed	NA|67aa|down_7|NZ_CP027788.1_488079_488280_-	pfam11372, DUF3173, Domain of unknown function (DUF3173)	NA|77aa|down_8|NZ_CP027788.1_488777_489008_-	pfam12645, HTH_16, Helix-turn-helix domain	NA|141aa|down_9|NZ_CP027788.1_489004_489427_-	TIGR02937, RNA_polymerase_sigma_factor, RNA polymerase sigma factor, sigma-70 family
GCF_003264815.1_ASM326481v1	NZ_CP027788	Staphylococcus aureus strain CMRSA-6 chromosome, complete genome	2	744405-744497	2	CRISPRCasFinder	no		csa3,cas3,DEDDh,DinG,WYL	Orphan	CTAAAGGTGAAGAGGAACGCAGTTGGATGCTA	32	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,DEDDh,DinG,WYL	NA|36aa|up_3|NZ_CP027788.1_740888_740996_+,NA|169aa|down_4|NZ_CP027788.1_748244_748751_+,NA|239aa|down_5|NZ_CP027788.1_748912_749629_+	NA|313aa|up_9|NZ_CP027788.1_735090_736029_+	cd19083, AKR_AKR11A1_11D1, AKR11A and  AKR11D families of aldo-keto reductase (AKR)	NA|179aa|up_8|NZ_CP027788.1_736239_736776_+	COG0655, WrbA, Multimeric flavodoxin WrbA [General function prediction only]	NA|159aa|up_7|NZ_CP027788.1_736944_737421_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|432aa|up_6|NZ_CP027788.1_737460_738756_+	COG1078, COG1078, HD superfamily phosphohydrolases [General function prediction only]	NA|174aa|up_5|NZ_CP027788.1_738783_739305_+	pfam08741, YwhD, YwhD family	NA|337aa|up_4|NZ_CP027788.1_739803_740814_+	PRK09422, PRK09422, ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional	NA|36aa|up_3|NZ_CP027788.1_740888_740996_+	NA	NA|128aa|up_2|NZ_CP027788.1_741121_741505_+	COG4506, COG4506, Uncharacterized protein conserved in bacteria [Function unknown]	NA|554aa|up_1|NZ_CP027788.1_741501_743163_+	PRK01611, argS, arginyl-tRNA synthetase; Reviewed	NA|212aa|up_0|NZ_CP027788.1_743551_744187_+	COG2231, COG2231, Uncharacterized protein related to Endonuclease III [DNA replication, recombination, and repair]	NA|276aa|down_0|NZ_CP027788.1_744625_745453_+	cd01143, YvrC, Periplasmic binding protein YvrC	NA|317aa|down_1|NZ_CP027788.1_745600_746551_+	pfam01032, FecCD, FecCD transport family	NA|240aa|down_2|NZ_CP027788.1_746605_747325_+	COG1011, COG1011, Predicted hydrolase (HAD superfamily) [General function prediction only]	NA|267aa|down_3|NZ_CP027788.1_747308_748109_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|169aa|down_4|NZ_CP027788.1_748244_748751_+	NA	NA|239aa|down_5|NZ_CP027788.1_748912_749629_+	NA	NA|263aa|down_6|NZ_CP027788.1_749797_750586_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|125aa|down_7|NZ_CP027788.1_750836_751211_-	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|310aa|down_8|NZ_CP027788.1_752158_753088_-	COG3238, COG3238, Uncharacterized protein conserved in bacteria [Function unknown]	NA|75aa|down_9|NZ_CP027788.1_753282_753507_-	pfam11148, DUF2922, Protein of unknown function (DUF2922)
GCF_003264815.1_ASM326481v1	NZ_CP027788	Staphylococcus aureus strain CMRSA-6 chromosome, complete genome	3	860151-860233	3	CRISPRCasFinder	no		csa3,cas3,DEDDh,DinG,WYL	Orphan	CCAATTTCTACAGACAATGCAAGTTGG	27	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,DEDDh,DinG,WYL	NA|69aa|up_9|NZ_CP027788.1_846751_846958_+,NA|34aa|down_1|NZ_CP027788.1_861689_861791_+,NA|52aa|down_8|NZ_CP027788.1_869970_870126_+	NA|69aa|up_9|NZ_CP027788.1_846751_846958_+	NA	NA|237aa|up_8|NZ_CP027788.1_847045_847756_+	COG2049, DUR1, Allophanate hydrolase subunit 1 [Amino acid transport and metabolism]	NA|335aa|up_7|NZ_CP027788.1_847739_848744_+	COG1984, DUR1, Allophanate hydrolase subunit 2 [Amino acid transport and metabolism]	NA|647aa|up_6|NZ_CP027788.1_849217_851158_+	COG1368, MdoB, Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily [Cell envelope biogenesis, outer membrane]	NA|628aa|up_5|NZ_CP027788.1_851428_853312_+	COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]	NA|594aa|up_4|NZ_CP027788.1_853323_855105_+	TIGR01389, recQ, ATP-dependent DNA helicase RecQ	NA|326aa|up_3|NZ_CP027788.1_855326_856304_+	COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]	NA|505aa|up_2|NZ_CP027788.1_856296_857811_+	cd13610, PBP2_ChoS, Substrate-binding domain ChoS of an osmoregulated ABC-type transporter and related proteins; type 2 periplasmic-binding protein fold	NA|353aa|up_1|NZ_CP027788.1_858050_859109_+	PRK03158, PRK03158, histidinol-phosphate aminotransferase; Provisional	NA|181aa|up_0|NZ_CP027788.1_859459_860002_+	COG4502, COG4502, 5'(3')-deoxyribonucleotidase [Nucleotide transport and metabolism]	NA|306aa|down_0|NZ_CP027788.1_860681_861599_-	COG1597, LCB5, Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]	NA|34aa|down_1|NZ_CP027788.1_861689_861791_+	NA	NA|502aa|down_2|NZ_CP027788.1_861868_863374_-	COG3104, PTR2, Dipeptide/tripeptide permease [Amino acid transport and metabolism]	NA|167aa|down_3|NZ_CP027788.1_863714_864215_-	COG0780, COG0780, Enzyme related to GTP cyclohydrolase I [General function prediction only]	NA|289aa|down_4|NZ_CP027788.1_864234_865101_-	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]	NA|133aa|down_5|NZ_CP027788.1_865901_866300_+	COG1780, NrdI, Protein involved in ribonucleotide reduction [Nucleotide transport and metabolism]	NA|702aa|down_6|NZ_CP027788.1_866262_868368_+	PRK07632, PRK07632, ribonucleotide-diphosphate reductase subunit alpha; Validated	NA|324aa|down_7|NZ_CP027788.1_868485_869457_+	TIGR04171, ribonucleotide-diphosphate_reductase_subunit_beta, ribonucleoside-diphosphate reductase, class 1b, beta subunit	NA|52aa|down_8|NZ_CP027788.1_869970_870126_+	NA	NA|324aa|down_9|NZ_CP027788.1_870164_871136_+	COG4606, CeuB, ABC-type enterochelin transport system, permease component [Inorganic ion transport and metabolism]
GCF_003264815.1_ASM326481v1	NZ_CP027788	Staphylococcus aureus strain CMRSA-6 chromosome, complete genome	4	901203-901283	4	CRISPRCasFinder	no	cas3	csa3,cas3,DEDDh,DinG,WYL	Unclear	TTCTTTATGTTGGGGCCCCGCCAACT	26	1	9	901229-901257|901229-901257|901229-901257|901229-901257|901229-901257|901229-901257|901229-901257|901229-901257|901229-901257	NZ_CP027788.1_440618-440590|NZ_CP027788.1_1898372-1898344|NZ_CP027788.1_319009-318981|NZ_CP027788.1_949805-949833|NZ_CP027788.1_1032826-1032854|NZ_CP027788.1_1233971-1233943|NZ_CP027788.1_1711773-1711801|NZ_CP027788.1_2065807-2065835|NZ_CP027788.1_2734640-2734612	NA	1	1	Unclear	csa3,cas3,DEDDh,DinG,WYL	NA|35aa|up_7|NZ_CP027788.1_892116_892221_+,NA|36aa|up_5|NZ_CP027788.1_893653_893761_+,NA	NA|191aa|up_9|NZ_CP027788.1_888557_889130_+	COG1544, COG1544, Ribosome-associated protein Y (PSrp-1) [Translation, ribosomal structure and biogenesis]	NA|844aa|up_8|NZ_CP027788.1_889543_892075_+	PRK12904, PRK12904, preprotein translocase subunit SecA; Reviewed	NA|35aa|up_7|NZ_CP027788.1_892116_892221_+	NA	NA|370aa|up_6|NZ_CP027788.1_892389_893500_+	PRK00578, prfB, peptide chain release factor 2; Validated	NA|36aa|up_5|NZ_CP027788.1_893653_893761_+	NA	NA|280aa|up_4|NZ_CP027788.1_893908_894748_+	COG3942, COG3942, Surface antigen [General function prediction only]	NA|217aa|up_3|NZ_CP027788.1_894921_895572_+	pfam12917, HD_2, HD containing hydrolase-like enzyme	NA|79aa|up_2|NZ_CP027788.1_895568_895805_+	COG4897, CsbA, Uncharacterized protein conserved in bacteria [Function unknown]	NA|662aa|up_1|NZ_CP027788.1_896073_898059_+	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|949aa|up_0|NZ_CP027788.1_898066_900913_+	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|311aa|down_0|NZ_CP027788.1_901519_902452_+	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional	NA|280aa|down_1|NZ_CP027788.1_902457_903297_+	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed	NA|162aa|down_2|NZ_CP027788.1_903304_903790_+	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins	NA|480aa|down_3|NZ_CP027788.1_903797_905237_+	sd00008, TPR_YbbN, C-terminal Tetratricopeptide repeat (TPR) region of YbbN and similar motifs	NA|312aa|down_4|NZ_CP027788.1_905303_906239_+	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase	NA|304aa|down_5|NZ_CP027788.1_907062_907974_+	COG1660, COG1660, Predicted P-loop-containing kinase [General function prediction only]	NA|332aa|down_6|NZ_CP027788.1_907970_908966_+	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|315aa|down_7|NZ_CP027788.1_909075_910020_+	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA	NA|196aa|down_8|NZ_CP027788.1_910592_911180_+	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed	NA|301aa|down_9|NZ_CP027788.1_911422_912325_-	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]
GCF_003264815.1_ASM326481v1	NZ_CP027788	Staphylococcus aureus strain CMRSA-6 chromosome, complete genome	5	949739-949820	5	CRISPRCasFinder	no		csa3,cas3,DEDDh,DinG,WYL	Orphan	CCCCAACTTGCATTGTCTGTAGAA	24	1	2	949763-949796|949763-949796	NZ_CP027788.1_1443514-1443481|NZ_CP027788.1_1532668-1532701	NA	1	1	Orphan	csa3,cas3,DEDDh,DinG,WYL	NA|38aa|up_1|NZ_CP027788.1_948641_948755_+,NA	NA|206aa|up_9|NZ_CP027788.1_943496_944114_-	COG1279, COG1279, Lysine efflux permease [General function prediction only]	NA|165aa|up_8|NZ_CP027788.1_944268_944763_-	pfam13420, Acetyltransf_4, Acetyltransferase (GNAT) domain	NA|141aa|up_7|NZ_CP027788.1_945161_945584_-	TIGR03561, organ_hyd_perox, peroxiredoxin, Ohr subfamily	NA|239aa|up_6|NZ_CP027788.1_945731_946448_+	PRK13575, PRK13575, type I 3-dehydroquinate dehydratase	NA|180aa|up_5|NZ_CP027788.1_946530_947070_+	cd02135, YdjA-like, nitroreductase family protein similar to Escherichia coli YdjA	NA|107aa|up_4|NZ_CP027788.1_947219_947540_-	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|119aa|up_3|NZ_CP027788.1_947683_948040_+	cd03036, ArsC_like, Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC	NA|127aa|up_2|NZ_CP027788.1_948197_948578_+	PRK01202, PRK01202, glycine cleavage system protein GcvH	NA|38aa|up_1|NZ_CP027788.1_948641_948755_+	NA	NA|293aa|up_0|NZ_CP027788.1_948756_949635_+	COG3878, COG3878, Uncharacterized protein conserved in bacteria [Function unknown]	NA|129aa|down_0|NZ_CP027788.1_950376_950763_+	COG1658, COG1658, Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair]	NA|99aa|down_1|NZ_CP027788.1_950755_951052_+	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|342aa|down_2|NZ_CP027788.1_951301_952327_+	COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]	NA|232aa|down_3|NZ_CP027788.1_952319_953015_+	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism]	NA|274aa|down_4|NZ_CP027788.1_953032_953854_+	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]	NA|407aa|down_5|NZ_CP027788.1_953997_955218_-	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|243aa|down_6|NZ_CP027788.1_955305_956034_-	pfam02876, Stap_Strp_tox_C, Staphylococcal/Streptococcal toxin, beta-grasp domain	NA|243aa|down_7|NZ_CP027788.1_956057_956786_-	pfam02876, Stap_Strp_tox_C, Staphylococcal/Streptococcal toxin, beta-grasp domain	NA|245aa|down_8|NZ_CP027788.1_956960_957695_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|71aa|down_9|NZ_CP027788.1_957844_958057_+	pfam13443, HTH_26, Cro/C1-type HTH DNA-binding domain
GCF_003264815.1_ASM326481v1	NZ_CP027788	Staphylococcus aureus strain CMRSA-6 chromosome, complete genome	6	1013156-1013438	1	CRT	no		csa3,cas3,DEDDh,DinG,WYL	Orphan	AAAGNCAGCTNNNNANANNNTGCAAGTTGG	30	3	7	1013186-1013211|1013186-1013211|1013186-1013211|1013300-1013325|1013300-1013325|1013356-1013408|1013356-1013408	NZ_CP027788.1_906656-906631|NZ_CP027788.1_1013130-1013155|NZ_CP027788.1_869623-869648|NZ_CP027788.1_2055108-2055083|NZ_CP027788.1_440456-440481|NZ_CP027788.1_283333-283385|NZ_CP027788.1_2849336-2849284	NA	4	4	Orphan	csa3,cas3,DEDDh,DinG,WYL	NA,NA	NA|499aa|up_9|NZ_CP027788.1_1002044_1003541_-	PRK07691, PRK07691, putative monovalent cation/H+ antiporter subunit D; Reviewed	NA|110aa|up_8|NZ_CP027788.1_1003533_1003863_-	PRK08600, PRK08600, putative monovalent cation/H+ antiporter subunit C; Reviewed	NA|143aa|up_7|NZ_CP027788.1_1003874_1004303_-	PRK12573, PRK12573, Na(+)/H(+) antiporter subunit B	NA|802aa|up_6|NZ_CP027788.1_1004295_1006701_-	PRK12645, PRK12645, monovalent cation/H+ antiporter subunit A; Reviewed	NA|128aa|up_5|NZ_CP027788.1_1006831_1007215_-	pfam08810, KapB, Kinase associated protein B	NA|198aa|up_4|NZ_CP027788.1_1007278_1007872_+	cd01927, cyclophilin_WD40, cyclophilin_WD40: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a WD40 domain	NA|126aa|up_3|NZ_CP027788.1_1008287_1008665_+	COG1098, VacB, Predicted RNA binding protein (contains ribosomal protein S1 domain) [Translation, ribosomal structure and biogenesis]	NA|376aa|up_2|NZ_CP027788.1_1009026_1010154_+	cd04735, OYE_like_4_FMN, Old yellow enzyme (OYE)-related FMN binding domain, group 4	NA|397aa|up_1|NZ_CP027788.1_1010461_1011652_+	PRK04073, rocD, ornithine--oxo-acid transaminase; Provisional	NA|415aa|up_0|NZ_CP027788.1_1011760_1013005_+	COG0334, GdhA, Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]	NA|310aa|down_0|NZ_CP027788.1_1013507_1014437_-	cd08601, GDPD_SaGlpQ_like, Glycerophosphodiester phosphodiesterase domain of Staphylococcus aureus and similar proteins	NA|460aa|down_1|NZ_CP027788.1_1014678_1016058_-	PRK00855, PRK00855, argininosuccinate lyase; Provisional	NA|402aa|down_2|NZ_CP027788.1_1016047_1017253_-	PRK00509, PRK00509, argininosuccinate synthase; Provisional	NA|444aa|down_3|NZ_CP027788.1_1017603_1018935_+	PRK14097, pgi, glucose-6-phosphate isomerase; Provisional	NA|192aa|down_4|NZ_CP027788.1_1019259_1019835_+	COG0398, COG0398, Uncharacterized conserved protein [Function unknown]	NA|175aa|down_5|NZ_CP027788.1_1019839_1020364_+	TIGR02227, Inactive_signal_peptidase_IA	NA|192aa|down_6|NZ_CP027788.1_1020379_1020955_+	TIGR02227, Inactive_signal_peptidase_IA	NA|1159aa|down_7|NZ_CP027788.1_1021114_1024591_+	TIGR02773, ATP-dependent_helicase/deoxyribonuclease_subunit_B, helicase-exonuclease AddAB, AddB subunit	NA|1218aa|down_8|NZ_CP027788.1_1024591_1028245_+	TIGR02785, ATP-dependent_helicase/nuclease_subunit_A, helicase-exonuclease AddAB, AddA subunit, Firmicutes type	NA|301aa|down_9|NZ_CP027788.1_1028410_1029313_+	COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism]
GCF_003264815.1_ASM326481v1	NZ_CP027788	Staphylococcus aureus strain CMRSA-6 chromosome, complete genome	7	1146829-1146916	6	CRISPRCasFinder	no		csa3,cas3,DEDDh,DinG,WYL	Orphan	CCCCTAACAACTAAAAGTTGTAAGG	25	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,DEDDh,DinG,WYL	NA|40aa|up_0|NZ_CP027788.1_1146705_1146825_+,NA|45aa|down_0|NZ_CP027788.1_1146925_1147060_-,NA|432aa|down_1|NZ_CP027788.1_1147211_1148507_+	NA|730aa|up_9|NZ_CP027788.1_1135283_1137473_+	PRK01213, PRK01213, phosphoribosylformylglycinamidine synthase subunit PurL	NA|495aa|up_8|NZ_CP027788.1_1137451_1138936_+	PRK07272, PRK07272, amidophosphoribosyltransferase; Provisional	NA|343aa|up_7|NZ_CP027788.1_1138928_1139957_+	PRK05385, PRK05385, phosphoribosylaminoimidazole synthetase; Provisional	NA|189aa|up_6|NZ_CP027788.1_1139959_1140526_+	COG0299, PurN, Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]	NA|493aa|up_5|NZ_CP027788.1_1140540_1142019_+	PRK00881, purH, bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional	NA|416aa|up_4|NZ_CP027788.1_1142040_1143288_+	PRK13790, PRK13790, phosphoribosylamine--glycine ligase; Provisional	NA|269aa|up_3|NZ_CP027788.1_1143552_1144359_-	COG0619, CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters [Inorganic ion transport and metabolism]	NA|467aa|up_2|NZ_CP027788.1_1144351_1145752_-	cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system	NA|192aa|up_1|NZ_CP027788.1_1145766_1146342_-	COG4721, COG4721, ABC-type cobalt transport system, predicted permease component [Inorganic ion transport and metabolism]	NA|40aa|up_0|NZ_CP027788.1_1146705_1146825_+	NA	NA|45aa|down_0|NZ_CP027788.1_1146925_1147060_-	NA	NA|432aa|down_1|NZ_CP027788.1_1147211_1148507_+	NA	NA|391aa|down_2|NZ_CP027788.1_1148931_1150104_+	COG1092, COG1092, Predicted SAM-dependent methyltransferases [General function prediction only]	NA|181aa|down_3|NZ_CP027788.1_1150157_1150700_+	pfam05128, DUF697, Domain of unknown function (DUF697)	NA|89aa|down_4|NZ_CP027788.1_1150853_1151120_+	PRK13780, PRK13780, phosphocarrier protein HPr; Provisional	NA|573aa|down_5|NZ_CP027788.1_1151122_1152841_+	COG1080, PtsA, Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) [Carbohydrate transport and metabolism]	NA|78aa|down_6|NZ_CP027788.1_1153077_1153311_-	cd02976, NrdH, NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile	NA|454aa|down_7|NZ_CP027788.1_1153508_1154870_+	pfam01654, Cyt_bd_oxida_I, Cytochrome bd terminal oxidase subunit I	NA|340aa|down_8|NZ_CP027788.1_1154866_1155886_+	COG1294, AppB, Cytochrome bd-type quinol oxidase, subunit 2 [Energy production and conversion]	NA|221aa|down_9|NZ_CP027788.1_1156018_1156681_+	COG0569, TrkA, K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
GCF_003264815.1_ASM326481v1	NZ_CP027788	Staphylococcus aureus strain CMRSA-6 chromosome, complete genome	8	1228500-1228801	2	CRT	no		csa3,cas3,DEDDh,DinG,WYL	Orphan	TGCAAGTTGGNGNGGNNCCNA	21	3	6	1228521-1228555|1228634-1228668|1228746-1228780|1228746-1228780|1228746-1228780|1228746-1228780	NZ_CP027788.1_1228465-1228499|NZ_CP027788.1_1228465-1228499|NZ_CP027788.1_2171934-2171900|NZ_CP027788.1_860133-860167|NZ_CP027788.1_906701-906667|NZ_CP027788.1_2849381-2849347	NA	5	5	Orphan	csa3,cas3,DEDDh,DinG,WYL	NA|56aa|up_6|NZ_CP027788.1_1224237_1224405_+,NA|31aa|up_4|NZ_CP027788.1_1225244_1225337_-,NA|169aa|up_2|NZ_CP027788.1_1226369_1226876_+,NA|62aa|down_0|NZ_CP027788.1_1228956_1229142_-,NA|78aa|down_1|NZ_CP027788.1_1229763_1229997_-,NA|49aa|down_4|NZ_CP027788.1_1233437_1233584_+,NA|75aa|down_5|NZ_CP027788.1_1233540_1233765_+	NA|267aa|up_9|NZ_CP027788.1_1222214_1223015_+	PRK00865, PRK00865, glutamate racemase; Provisional	NA|196aa|up_8|NZ_CP027788.1_1223026_1223614_+	PRK14822, PRK14822, XTP/dITP diphosphatase	NA|168aa|up_7|NZ_CP027788.1_1223606_1224110_+	COG0622, COG0622, Predicted phosphoesterase [General function prediction only]	NA|56aa|up_6|NZ_CP027788.1_1224237_1224405_+	NA	NA|110aa|up_5|NZ_CP027788.1_1224598_1224928_+	pfam12199, efb-c, Extracellular fibrinogen binding protein C terminal	NA|31aa|up_4|NZ_CP027788.1_1225244_1225337_-	NA	NA|134aa|up_3|NZ_CP027788.1_1225296_1225698_-	PRK13033, PRK13033, formyl peptide receptor-like 1 inhibitory protein; Reviewed	NA|169aa|up_2|NZ_CP027788.1_1226369_1226876_+	NA	NA|166aa|up_1|NZ_CP027788.1_1227134_1227632_+	pfam12199, efb-c, Extracellular fibrinogen binding protein C terminal	NA|117aa|up_0|NZ_CP027788.1_1227785_1228136_+	pfam11546, CompInhib_SCIN, Staphylococcal complement inhibitor SCIN	NA|62aa|down_0|NZ_CP027788.1_1228956_1229142_-	NA	NA|78aa|down_1|NZ_CP027788.1_1229763_1229997_-	NA	NA|320aa|down_2|NZ_CP027788.1_1230473_1231433_-	TIGR01002, synergohymenotropic_toxin, beta-channel forming cytolysin	NA|391aa|down_3|NZ_CP027788.1_1231697_1232870_+	pfam00872, Transposase_mut, Transposase, Mutator family	NA|49aa|down_4|NZ_CP027788.1_1233437_1233584_+	NA	NA|75aa|down_5|NZ_CP027788.1_1233540_1233765_+	NA	NA|239aa|down_6|NZ_CP027788.1_1234265_1234982_-	PRK13350, PRK13350, superantigen-like protein; Reviewed	NA|242aa|down_7|NZ_CP027788.1_1235089_1235815_-	PRK13349, PRK13349, superantigen-like protein; Reviewed	NA|242aa|down_8|NZ_CP027788.1_1235909_1236635_-	PRK13043, PRK13043, superantigen-like protein; Reviewed	NA|334aa|down_9|NZ_CP027788.1_1237072_1238074_+	PRK04284, PRK04284, ornithine carbamoyltransferase; Provisional
GCF_003264815.1_ASM326481v1	NZ_CP027788	Staphylococcus aureus strain CMRSA-6 chromosome, complete genome	9	1234005-1234090	7	CRISPRCasFinder	no		csa3,cas3,DEDDh,DinG,WYL	Orphan	AAAGTCAGCTTACAATAATGTGCAAGTTGG	30	1	5	1234035-1234060|1234035-1234060|1234035-1234060|1234035-1234060|1234035-1234060	NZ_CP027788.1_318849-318874|NZ_CP027788.1_869679-869704|NZ_CP027788.1_906656-906631|NZ_CP027788.1_869623-869648|NZ_CP027788.1_869735-869760	NA	1	1	Orphan	csa3,cas3,DEDDh,DinG,WYL	NA|169aa|up_8|NZ_CP027788.1_1226369_1226876_+,NA|62aa|up_5|NZ_CP027788.1_1228956_1229142_-,NA|78aa|up_4|NZ_CP027788.1_1229763_1229997_-,NA|49aa|up_1|NZ_CP027788.1_1233437_1233584_+,NA|75aa|up_0|NZ_CP027788.1_1233540_1233765_+,NA|76aa|down_6|NZ_CP027788.1_1241064_1241292_+	NA|134aa|up_9|NZ_CP027788.1_1225296_1225698_-	PRK13033, PRK13033, formyl peptide receptor-like 1 inhibitory protein; Reviewed	NA|169aa|up_8|NZ_CP027788.1_1226369_1226876_+	NA	NA|166aa|up_7|NZ_CP027788.1_1227134_1227632_+	pfam12199, efb-c, Extracellular fibrinogen binding protein C terminal	NA|117aa|up_6|NZ_CP027788.1_1227785_1228136_+	pfam11546, CompInhib_SCIN, Staphylococcal complement inhibitor SCIN	NA|62aa|up_5|NZ_CP027788.1_1228956_1229142_-	NA	NA|78aa|up_4|NZ_CP027788.1_1229763_1229997_-	NA	NA|320aa|up_3|NZ_CP027788.1_1230473_1231433_-	TIGR01002, synergohymenotropic_toxin, beta-channel forming cytolysin	NA|391aa|up_2|NZ_CP027788.1_1231697_1232870_+	pfam00872, Transposase_mut, Transposase, Mutator family	NA|49aa|up_1|NZ_CP027788.1_1233437_1233584_+	NA	NA|75aa|up_0|NZ_CP027788.1_1233540_1233765_+	NA	NA|239aa|down_0|NZ_CP027788.1_1234265_1234982_-	PRK13350, PRK13350, superantigen-like protein; Reviewed	NA|242aa|down_1|NZ_CP027788.1_1235089_1235815_-	PRK13349, PRK13349, superantigen-like protein; Reviewed	NA|242aa|down_2|NZ_CP027788.1_1235909_1236635_-	PRK13043, PRK13043, superantigen-like protein; Reviewed	NA|334aa|down_3|NZ_CP027788.1_1237072_1238074_+	PRK04284, PRK04284, ornithine carbamoyltransferase; Provisional	NA|311aa|down_4|NZ_CP027788.1_1238096_1239029_+	PRK12353, PRK12353, putative amino acid kinase; Reviewed	NA|497aa|down_5|NZ_CP027788.1_1239266_1240757_+	COG1288, COG1288, Predicted membrane protein [Function unknown]	NA|76aa|down_6|NZ_CP027788.1_1241064_1241292_+	NA	NA|316aa|down_7|NZ_CP027788.1_1241596_1242544_-	cd09325, TDT_C4-dicarb_trans, C4-dicarboxylate transporters of the Tellurite-resistance/Dicarboxylate Transporter (TDT) family	NA|63aa|down_8|NZ_CP027788.1_1242792_1242981_+	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]	NA|45aa|down_9|NZ_CP027788.1_1243892_1244027_+	pfam05480, Staph_haemo, Staphylococcus haemolytic protein
GCF_003264815.1_ASM326481v1	NZ_CP027788	Staphylococcus aureus strain CMRSA-6 chromosome, complete genome	10	2418844-2418994	8	CRISPRCasFinder	no	csa3	csa3,cas3,DEDDh,DinG,WYL	Type I-A	AACTTTAGTTGTTAGGGGCTCTTATGCA	28	0	0	NA	NA	NA	2	2	Orphan	csa3,cas3,DEDDh,DinG,WYL	NA|77aa|up_5|NZ_CP027788.1_2413715_2413946_-,NA|364aa|up_0|NZ_CP027788.1_2417734_2418826_+,NA|35aa|down_0|NZ_CP027788.1_2419325_2419430_-,NA|31aa|down_2|NZ_CP027788.1_2421541_2421634_+	NA|237aa|up_9|NZ_CP027788.1_2409325_2410036_+	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase	NA|148aa|up_8|NZ_CP027788.1_2410156_2410600_-	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism]	NA|138aa|up_7|NZ_CP027788.1_2410799_2411213_-	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function    prediction only]	NA|458aa|up_6|NZ_CP027788.1_2411670_2413044_-	pfam01878, EVE, EVE domain	NA|77aa|up_5|NZ_CP027788.1_2413715_2413946_-	NA	NA|313aa|up_4|NZ_CP027788.1_2413976_2414915_-	COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism]	NA|222aa|up_3|NZ_CP027788.1_2415349_2416015_-	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5	csa3|107aa|up_2|NZ_CP027788.1_2416166_2416487_+	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|327aa|up_1|NZ_CP027788.1_2416488_2417469_+	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	NA|364aa|up_0|NZ_CP027788.1_2417734_2418826_+	NA	NA|35aa|down_0|NZ_CP027788.1_2419325_2419430_-	NA	NA|379aa|down_1|NZ_CP027788.1_2420116_2421253_-	pfam02037, SAP, SAP domain	NA|31aa|down_2|NZ_CP027788.1_2421541_2421634_+	NA	NA|286aa|down_3|NZ_CP027788.1_2422338_2423196_-	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|261aa|down_4|NZ_CP027788.1_2423263_2424046_-	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|602aa|down_5|NZ_CP027788.1_2424277_2426083_-	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|513aa|down_6|NZ_CP027788.1_2426763_2428302_+	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]	NA|711aa|down_7|NZ_CP027788.1_2428336_2430469_+	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|145aa|down_8|NZ_CP027788.1_2430480_2430915_+	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]	NA|369aa|down_9|NZ_CP027788.1_2430914_2432021_+	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional
GCF_003264815.1_ASM326481v1	NZ_CP027788	Staphylococcus aureus strain CMRSA-6 chromosome, complete genome	11	2543007-2543200	3	CRT	no		csa3,cas3,DEDDh,DinG,WYL	Orphan	TGTTGGGGCCCCGCCAACTTGCA	23	3	17	2543030-2543062|2543030-2543062|2543030-2543062|2543030-2543062|2543030-2543062|2543030-2543062|2543086-2543121|2543086-2543121|2543086-2543121|2543086-2543121|2543086-2543121|2543145-2543177|2543145-2543177|2543145-2543177|2543145-2543177|2543145-2543177|2543145-2543177	NZ_CP027788.1_1130549-1130581|NZ_CP027788.1_1234024-1233992|NZ_CP027788.1_1443468-1443436|NZ_CP027788.1_1532714-1532746|NZ_CP027788.1_2055063-2055095|NZ_CP027788.1_2815082-2815114|NZ_CP027788.1_1233971-1233936|NZ_CP027788.1_1898372-1898337|NZ_CP027788.1_319009-318974|NZ_CP027788.1_1711773-1711808|NZ_CP027788.1_2065807-2065842|NZ_CP027788.1_906611-906643|NZ_CP027788.1_1130549-1130581|NZ_CP027788.1_1234024-1233992|NZ_CP027788.1_1443468-1443436|NZ_CP027788.1_2055063-2055095|NZ_CP027788.1_2815082-2815114	NA	3	3	Orphan	csa3,cas3,DEDDh,DinG,WYL	NA|55aa|up_9|NZ_CP027788.1_2533534_2533699_+,NA|106aa|up_8|NZ_CP027788.1_2533943_2534261_+,NA|84aa|up_5|NZ_CP027788.1_2539385_2539637_+,NA|57aa|up_0|NZ_CP027788.1_2542776_2542947_+,NA	NA|55aa|up_9|NZ_CP027788.1_2533534_2533699_+	NA	NA|106aa|up_8|NZ_CP027788.1_2533943_2534261_+	NA	NA|1056aa|up_7|NZ_CP027788.1_2534447_2537615_-	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms]	NA|422aa|up_6|NZ_CP027788.1_2537731_2538997_-	COG2348, COG2348, Peptidoglycan interpeptide bridge formation enzyme [Cell wall/membrane/envelope biogenesis]	NA|84aa|up_5|NZ_CP027788.1_2539385_2539637_+	NA	NA|255aa|up_4|NZ_CP027788.1_2539628_2540393_-	pfam13468, Glyoxalase_3, Glyoxalase-like domain	NA|147aa|up_3|NZ_CP027788.1_2540554_2540995_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|404aa|up_2|NZ_CP027788.1_2540987_2542199_+	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily	NA|117aa|up_1|NZ_CP027788.1_2542300_2542651_-	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|57aa|up_0|NZ_CP027788.1_2542776_2542947_+	NA	NA|341aa|down_0|NZ_CP027788.1_2543341_2544364_-	TIGR02666, Cyclic_pyranopterin_monophosphate_synthase, molybdenum cofactor biosynthesis protein A, bacterial	NA|200aa|down_1|NZ_CP027788.1_2544383_2544983_-	PRK00317, mobA, molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed	NA|78aa|down_2|NZ_CP027788.1_2544989_2545223_-	cd00754, Ubl_MoaD, ubiquitin-like (Ubl) domain found in molybdenum cofactor biosynthesis protein D (MoaD) and similar proteins	NA|149aa|down_3|NZ_CP027788.1_2545228_2545675_-	COG0314, MoaE, Molybdopterin converting factor, large subunit [Coenzyme metabolism]	NA|162aa|down_4|NZ_CP027788.1_2545688_2546174_-	COG1763, MobB, Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]	NA|420aa|down_5|NZ_CP027788.1_2546170_2547430_-	cd00887, MoeA, MoeA family	NA|165aa|down_6|NZ_CP027788.1_2547492_2547987_+	PRK09364, moaC, cyclic pyranopterin monophosphate synthase MoaC	NA|169aa|down_7|NZ_CP027788.1_2547988_2548495_-	COG0521, MoaB, Molybdopterin biosynthesis enzymes [Coenzyme metabolism]	NA|335aa|down_8|NZ_CP027788.1_2548525_2549530_-	PRK07688, PRK07688, thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated	NA|202aa|down_9|NZ_CP027788.1_2549699_2550305_-	COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
