assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_003254065.1_ASM325406v1	NZ_CP029973	Escherichia coli strain 51008369SK1 chromosome, complete genome	1	596742-596891	1	CRISPRCasFinder	no	RT	DEDDh,c2c9_V-U4,RT,DinG,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,WYL,PD-DExK	Unclear	CGCGTCTTATCAGGCCTACGAGTTCGGTGCTGTGTAGGTCGGATAAGGCGTTCA	54	0	0	NA	NA	NA	1	1	Orphan	DEDDh,c2c9_V-U4,RT,DinG,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,WYL,PD-DExK	NA|474aa|up_8|NZ_CP029973.1_586846_588268_+,NA|102aa|up_7|NZ_CP029973.1_588254_588560_+,NA|213aa|down_6|NZ_CP029973.1_605434_606073_+,NA|62aa|down_8|NZ_CP029973.1_606777_606963_-,NA|59aa|down_9|NZ_CP029973.1_607150_607327_+	NA|151aa|up_9|NZ_CP029973.1_586271_586724_+	COG2731, EbgC, Beta-galactosidase, beta subunit [Carbohydrate transport and metabolism]	NA|474aa|up_8|NZ_CP029973.1_586846_588268_+	NA	NA|102aa|up_7|NZ_CP029973.1_588254_588560_+	NA	NA|323aa|up_6|NZ_CP029973.1_588605_589574_-	pfam13737, DDE_Tnp_1_5, Transposase DDE domain	NA|335aa|up_5|NZ_CP029973.1_589712_590717_-	PRK03515, PRK03515, ornithine carbamoyltransferase subunit I; Provisional	NA|139aa|up_4|NZ_CP029973.1_590878_591295_+	PRK11191, PRK11191, ribonuclease E inhibitor RraB	NA|168aa|up_3|NZ_CP029973.1_591340_591844_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|396aa|up_2|NZ_CP029973.1_592036_593224_+	COG4269, COG4269, Predicted membrane protein [Function unknown]	NA|952aa|up_1|NZ_CP029973.1_593275_596131_-	PRK05729, valS, valyl-tRNA synthetase; Reviewed	NA|148aa|up_0|NZ_CP029973.1_596130_596574_-	PRK05728, PRK05728, DNA polymerase III subunit chi; Validated	NA|504aa|down_0|NZ_CP029973.1_596927_598439_-	PRK00913, PRK00913, multifunctional aminopeptidase A; Provisional	NA|367aa|down_1|NZ_CP029973.1_598705_599806_+	PRK15120, PRK15120, lipopolysaccharide ABC transporter permease LptF; Provisional	NA|361aa|down_2|NZ_CP029973.1_599805_600888_+	PRK15071, PRK15071, lipopolysaccharide ABC transporter permease; Provisional	NA|501aa|down_3|NZ_CP029973.1_601048_602551_-	pfam05872, DUF853, Bacterial protein of unknown function (DUF853)	NA|340aa|down_4|NZ_CP029973.1_602678_603698_-	cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD)	NA|421aa|down_5|NZ_CP029973.1_604142_605405_+	PRK09692, PRK09692, integrase; Provisional	NA|213aa|down_6|NZ_CP029973.1_605434_606073_+	NA	NA|77aa|down_7|NZ_CP029973.1_606450_606681_+	COG3311, AlpA, Predicted transcriptional regulator [Transcription]	NA|62aa|down_8|NZ_CP029973.1_606777_606963_-	NA	NA|59aa|down_9|NZ_CP029973.1_607150_607327_+	NA
GCF_003254065.1_ASM325406v1	NZ_CP029973	Escherichia coli strain 51008369SK1 chromosome, complete genome	2	1160538-1160682	2	CRISPRCasFinder	no		DEDDh,c2c9_V-U4,RT,DinG,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,WYL,PD-DExK	Orphan	ATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAAA	43	0	0	NA	NA	NA	1	1	Orphan	DEDDh,c2c9_V-U4,RT,DinG,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,WYL,PD-DExK	NA|28aa|up_2|NZ_CP029973.1_1158408_1158492_+,NA	NA|372aa|up_9|NZ_CP029973.1_1153252_1154368_+	PRK10245, adrA, diguanylate cyclase AdrA; Provisional	NA|270aa|up_8|NZ_CP029973.1_1154384_1155194_-	PRK11880, PRK11880, pyrroline-5-carboxylate reductase; Reviewed	NA|121aa|up_7|NZ_CP029973.1_1155321_1155684_+	PRK00124, PRK00124, YaiI/YqxD family protein	NA|175aa|up_6|NZ_CP029973.1_1155866_1156391_+	PRK03731, aroL, shikimate kinase AroL	NA|64aa|up_5|NZ_CP029973.1_1156440_1156632_+	PRK10380, PRK10380, hypothetical protein; Provisional	NA|226aa|up_4|NZ_CP029973.1_1156889_1157567_+	PRK10481, PRK10481, hypothetical protein; Provisional	NA|95aa|up_3|NZ_CP029973.1_1157638_1157923_+	PRK10579, PRK10579, pyrimidine/purine nucleoside phosphorylase	NA|28aa|up_2|NZ_CP029973.1_1158408_1158492_+	NA	NA|304aa|up_1|NZ_CP029973.1_1158569_1159481_-	COG2974, RdgC, DNA recombination-dependent growth factor C [DNA replication, recombination, and repair]	NA|303aa|up_0|NZ_CP029973.1_1159605_1160514_+	PRK09557, PRK09557, fructokinase; Reviewed	NA|395aa|down_0|NZ_CP029973.1_1160758_1161943_-	PRK10091, PRK10091, MFS transport protein AraJ; Provisional	NA|1049aa|down_1|NZ_CP029973.1_1162068_1165215_-	PRK10246, PRK10246, exonuclease subunit SbcC; Provisional	NA|401aa|down_2|NZ_CP029973.1_1165211_1166414_-	PRK10966, PRK10966, exonuclease subunit SbcD; Provisional	NA|230aa|down_3|NZ_CP029973.1_1166603_1167293_+	PRK10161, PRK10161, phosphate response regulator transcription factor PhoB	NA|432aa|down_4|NZ_CP029973.1_1167350_1168646_+	PRK11006, phoR, phosphate regulon sensor histidine kinase PhoR	NA|440aa|down_5|NZ_CP029973.1_1169052_1170372_+	PRK15433, PRK15433, branched-chain amino acid transporter carrier protein BrnQ	NA|458aa|down_6|NZ_CP029973.1_1170447_1171821_+	PRK10580, proY, putative proline-specific permease; Provisional	NA|606aa|down_7|NZ_CP029973.1_1171976_1173794_+	PRK10785, PRK10785, maltodextrin glucosidase; Provisional	NA|194aa|down_8|NZ_CP029973.1_1173798_1174380_-	PRK10045, PRK10045, ACP phosphodiesterase	NA|357aa|down_9|NZ_CP029973.1_1174472_1175543_+	PRK00147, queA, S-adenosylmethionine:tRNA ribosyltransferase-isomerase; Provisional
GCF_003254065.1_ASM325406v1	NZ_CP029973	Escherichia coli strain 51008369SK1 chromosome, complete genome	3	1300723-1300819	3	CRISPRCasFinder	no		DEDDh,c2c9_V-U4,RT,DinG,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,WYL,PD-DExK	Orphan	GCTTGACGCGTCTTATCAGGCCTACAA	27	0	0	NA	NA	NA	1	1	Orphan	DEDDh,c2c9_V-U4,RT,DinG,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,WYL,PD-DExK	NA,NA	NA|454aa|up_9|NZ_CP029973.1_1288503_1289865_+	PRK08044, PRK08044, allantoinase AllB	NA|434aa|up_8|NZ_CP029973.1_1289921_1291223_+	PRK11412, PRK11412, uracil/xanthine transporter	NA|382aa|up_7|NZ_CP029973.1_1291244_1292390_+	PRK09932, PRK09932, glycerate 3-kinase	NA|262aa|up_6|NZ_CP029973.1_1292617_1293403_-	TIGR03214, ura-cupin, putative allantoin catabolism protein	NA|412aa|up_5|NZ_CP029973.1_1293413_1294649_-	TIGR03176, AllC, allantoate amidohydrolase	NA|350aa|up_4|NZ_CP029973.1_1294670_1295720_-	PRK15025, PRK15025, ureidoglycolate dehydrogenase; Provisional	NA|556aa|up_3|NZ_CP029973.1_1296036_1297704_+	PRK06091, PRK06091, membrane protein FdrA; Validated	NA|420aa|up_2|NZ_CP029973.1_1297713_1298973_+	pfam06545, DUF1116, Protein of unknown function (DUF1116)	NA|272aa|up_1|NZ_CP029973.1_1298983_1299799_+	pfam11392, DUF2877, Protein of unknown function (DUF2877)	NA|298aa|up_0|NZ_CP029973.1_1299795_1300689_+	PRK09411, PRK09411, carbamate kinase; Reviewed	NA|356aa|down_0|NZ_CP029973.1_1300883_1301951_-	PRK06019, PRK06019, phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed	NA|170aa|down_1|NZ_CP029973.1_1301947_1302457_-	COG0041, PurE, Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]	NA|241aa|down_2|NZ_CP029973.1_1302574_1303297_-	PRK05340, PRK05340, UDP-2,3-diacylglucosamine hydrolase; Provisional	NA|165aa|down_3|NZ_CP029973.1_1303299_1303794_-	PRK10791, PRK10791, peptidylprolyl isomerase B	NA|462aa|down_4|NZ_CP029973.1_1303967_1305353_+	PRK00260, cysS, cysteinyl-tRNA synthetase; Validated	NA|174aa|down_5|NZ_CP029973.1_1305388_1305910_-	COG1988, COG1988, Predicted membrane-bound metal-dependent hydrolases [General function prediction only]	NA|71aa|down_6|NZ_CP029973.1_1306017_1306230_-	PRK11507, PRK11507, ribosome-associated protein YbcJ	NA|289aa|down_7|NZ_CP029973.1_1306231_1307098_-	PRK10792, PRK10792, bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA|181aa|down_8|NZ_CP029973.1_1307568_1308111_+	PRK15194, PRK15194, type 1 fimbrial protein subunit FimA	NA|231aa|down_9|NZ_CP029973.1_1308330_1309023_+	PRK15195, PRK15195, molecular chaperone FimC
GCF_003254065.1_ASM325406v1	NZ_CP029973	Escherichia coli strain 51008369SK1 chromosome, complete genome	4	3196977-3197103	4	CRISPRCasFinder	no		DEDDh,c2c9_V-U4,RT,DinG,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,WYL,PD-DExK	Orphan	TTTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGC	39	0	0	NA	NA	NA	1	1	Orphan	DEDDh,c2c9_V-U4,RT,DinG,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,WYL,PD-DExK	NA,NA	NA|395aa|up_9|NZ_CP029973.1_3175884_3177069_+	PRK05790, PRK05790, putative acyltransferase; Provisional	NA|259aa|up_8|NZ_CP029973.1_3177142_3177919_-	COG4676, COG4676, Uncharacterized protein conserved in bacteria [Function unknown]	NA|550aa|up_7|NZ_CP029973.1_3177923_3179573_-	COG5445, COG5445, Predicted secreted protein [Function unknown]	NA|1465aa|up_6|NZ_CP029973.1_3179573_3183968_-	COG2373, COG2373, Large extracellular alpha-helical protein [General function prediction only]	NA|208aa|up_5|NZ_CP029973.1_3184111_3184735_-	COG3234, COG3234, Uncharacterized protein conserved in bacteria [Function unknown]	NA|563aa|up_4|NZ_CP029973.1_3184731_3186420_-	COG4685, COG4685, Uncharacterized protein conserved in bacteria [Function unknown]	NA|876aa|up_3|NZ_CP029973.1_3186568_3189196_-	PRK05560, PRK05560, DNA gyrase subunit A; Validated	NA|241aa|up_2|NZ_CP029973.1_3189342_3190065_+	PRK05134, PRK05134, bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG	NA|1251aa|up_1|NZ_CP029973.1_3190192_3193945_-	PRK09752, PRK09752, AIDA-I family autotransporter YfaL	NA|762aa|up_0|NZ_CP029973.1_3194640_3196926_+	PRK09103, PRK09103, ribonucleoside-diphosphate reductase subunit alpha	NA|377aa|down_0|NZ_CP029973.1_3197159_3198290_+	PRK09101, nrdB, ribonucleotide-diphosphate reductase subunit beta; Reviewed	NA|85aa|down_1|NZ_CP029973.1_3198289_3198544_+	PRK10713, PRK10713, 2Fe-2S ferredoxin-like protein	NA|217aa|down_2|NZ_CP029973.1_3198597_3199248_-	PRK09902, PRK09902, lipopolysaccharide kinase InaA	NA|359aa|down_3|NZ_CP029973.1_3199710_3200787_-	PRK11143, glpQ, glycerophosphodiester phosphodiesterase; Provisional	NA|453aa|down_4|NZ_CP029973.1_3200791_3202150_-	PRK11273, glpT, glycerol-3-phosphate transporter	NA|543aa|down_5|NZ_CP029973.1_3202422_3204051_+	PRK11101, glpA, anaerobic glycerol-3-phosphate dehydrogenase subunit A	NA|420aa|down_6|NZ_CP029973.1_3204040_3205300_+	COG3075, GlpB, Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]	NA|397aa|down_7|NZ_CP029973.1_3205296_3206487_+	TIGR03379, glycerol3P_GlpC, glycerol-3-phosphate dehydrogenase, anaerobic, C subunit	NA|300aa|down_8|NZ_CP029973.1_3206679_3207579_+	PRK09956, PRK09956, ISNCY family transposase	NA|62aa|down_9|NZ_CP029973.1_3207591_3207777_+	PRK09956, PRK09956, ISNCY family transposase
GCF_003254065.1_ASM325406v1	NZ_CP029973	Escherichia coli strain 51008369SK1 chromosome, complete genome	5	3692834-3693533	5,1,1	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas3	DEDDh,c2c9_V-U4,RT,DinG,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,WYL,PD-DExK	Type I-E	CGGTTTATCCCCGCTGGCGCGGGGAACTC,CGGTTTATCCCCGCTGGCGCGGGGAACTC,CGGTTTATCCCCGCTGGCGCGGGGAACTC	29,29,29	0	0	NA	NA	I-E:I-E:I-E	11,11,8	11	TypeI-E	DEDDh,c2c9_V-U4,RT,DinG,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,WYL,PD-DExK	NA,NA	NA|380aa|up_9|NZ_CP029973.1_3682749_3683889_-	PRK10871, nlpD, murein hydrolase activator NlpD	NA|209aa|up_8|NZ_CP029973.1_3684027_3684654_-	PRK00312, pcm, protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA|254aa|up_7|NZ_CP029973.1_3684647_3685409_-	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional	NA|350aa|up_6|NZ_CP029973.1_3685389_3686439_-	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|104aa|up_5|NZ_CP029973.1_3687641_3687953_-	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|108aa|up_4|NZ_CP029973.1_3688146_3688470_-	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|202aa|up_3|NZ_CP029973.1_3688519_3689125_-	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|476aa|up_2|NZ_CP029973.1_3689124_3690552_-	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|303aa|up_1|NZ_CP029973.1_3690553_3691462_-	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|346aa|up_0|NZ_CP029973.1_3691713_3692751_+	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	cas2|95aa|down_0|NZ_CP029973.1_3693638_3693923_-	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	cas1|306aa|down_1|NZ_CP029973.1_3693924_3694842_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas6e|200aa|down_2|NZ_CP029973.1_3694857_3695457_-	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas5|225aa|down_3|NZ_CP029973.1_3695443_3696118_-	TIGR01868, hypothetical_protein, CRISPR-associated protein Cas5/CasD, subtype I-E/ECOLI	cas7|364aa|down_4|NZ_CP029973.1_3696120_3697212_-	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cse2gr11|161aa|down_5|NZ_CP029973.1_3697224_3697707_-	cd09670, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas3|889aa|down_6|NZ_CP029973.1_3699620_3702287_-	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	NA|245aa|down_7|NZ_CP029973.1_3702645_3703380_-	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|571aa|down_8|NZ_CP029973.1_3703454_3705167_-	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|600aa|down_9|NZ_CP029973.1_3705166_3706966_-	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit
GCF_003254065.1_ASM325406v1	NZ_CP029973	Escherichia coli strain 51008369SK1 chromosome, complete genome	6	3719082-3719411	2,6,2	PILER-CR,CRISPRCasFinder,CRT	no	cas3	DEDDh,c2c9_V-U4,RT,DinG,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,WYL,PD-DExK	Unclear	GGTTTATCCCCGCTGGCGCGGGGAAC,GGTTTATCCCCGCTGGCGCGGGGAAC,GGTTTATCCCCGCTGGCGCGGGGAAC	26,26,26	0	0	NA	NA	I-E:I-E:I-E	5,5,5	5	Unclear	DEDDh,c2c9_V-U4,RT,DinG,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,WYL,PD-DExK	NA,NA|47aa|down_1|NZ_CP029973.1_3720562_3720703_+	NA|424aa|up_9|NZ_CP029973.1_3707724_3708996_+	PRK10015, PRK10015, oxidoreductase; Provisional	NA|87aa|up_8|NZ_CP029973.1_3708986_3709247_+	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|192aa|up_7|NZ_CP029973.1_3709263_3709839_+	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|298aa|up_6|NZ_CP029973.1_3709986_3710880_-	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|260aa|up_5|NZ_CP029973.1_3710843_3711623_-	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|470aa|up_4|NZ_CP029973.1_3711600_3713010_-	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	NA|485aa|up_3|NZ_CP029973.1_3713031_3714486_-	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|262aa|up_2|NZ_CP029973.1_3714555_3715341_-	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs	NA|426aa|up_1|NZ_CP029973.1_3715659_3716937_+	cd06174, MFS, Major Facilitator Superfamily	NA|493aa|up_0|NZ_CP029973.1_3716963_3718442_+	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|224aa|down_0|NZ_CP029973.1_3719752_3720424_-	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|47aa|down_1|NZ_CP029973.1_3720562_3720703_+	NA	NA|291aa|down_2|NZ_CP029973.1_3720716_3721589_+	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|433aa|down_3|NZ_CP029973.1_3721648_3722947_-	PRK00077, eno, enolase; Provisional	NA|546aa|down_4|NZ_CP029973.1_3723034_3724672_-	PRK05380, pyrG, CTP synthetase; Validated	NA|264aa|down_5|NZ_CP029973.1_3724899_3725691_-	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|112aa|down_6|NZ_CP029973.1_3725761_3726097_-	PRK09907, PRK09907, endoribonuclease MazF	NA|83aa|down_7|NZ_CP029973.1_3726096_3726345_-	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE	NA|745aa|down_8|NZ_CP029973.1_3726422_3728657_-	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|434aa|down_9|NZ_CP029973.1_3728704_3730006_-	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
