assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_003204135.1_ASM320413v1	NZ_CP029736	Providencia rettgeri strain AR_0082 chromosome, complete genome	1	126001-126314	1	CRISPRCasFinder	no		WYL,cas3,DEDDh,RT,csa3,DinG	Orphan	AATGGTGGTAATGGCGGCAATGG	23	1	1	126078-126096	NZ_CP029736.1_1501993-1502011	NA	6	6	Orphan	WYL,cas3,DEDDh,RT,csa3,DinG	NA|156aa|up_1|NZ_CP029736.1_124778_125246_+,NA|51aa|down_3|NZ_CP029736.1_131283_131436_-	NA|330aa|up_9|NZ_CP029736.1_114771_115761_+	cd19151, AKR_AKR14A2, Salmonella enterica aldo-keto reductase (AKR) and similar protein	NA|141aa|up_8|NZ_CP029736.1_115812_116235_-	COG3019, COG3019, Predicted metal-binding protein [General function prediction only]	NA|1046aa|up_7|NZ_CP029736.1_116276_119414_-	TIGR00914, Nickel-cobalt-cadmium_resistance_protein_NccA, heavy metal efflux pump, CzcA family	NA|423aa|up_6|NZ_CP029736.1_119417_120686_-	PRK09783, PRK09783, copper/silver efflux system membrane fusion protein CusB; Provisional	NA|118aa|up_5|NZ_CP029736.1_120703_121057_-	PRK09838, PRK09838, periplasmic copper-binding protein; Provisional	NA|465aa|up_4|NZ_CP029736.1_121053_122448_-	PRK09837, PRK09837, Cu(I)/Ag(I) efflux RND transporter outer membrane protein	NA|228aa|up_3|NZ_CP029736.1_122602_123286_+	PRK09836, PRK09836, DNA-binding transcriptional activator CusR; Provisional	NA|462aa|up_2|NZ_CP029736.1_123278_124664_+	PRK09835, PRK09835, Cu(+)/Ag(+) sensor histidine kinase	NA|156aa|up_1|NZ_CP029736.1_124778_125246_+	NA	NA|72aa|up_0|NZ_CP029736.1_125461_125677_+	PLN03138, PLN03138, Protein TOC75; Provisional	NA|432aa|down_0|NZ_CP029736.1_126507_127803_-	PRK09225, PRK09225, threonine synthase; Validated	NA|310aa|down_1|NZ_CP029736.1_127806_128736_-	PRK01212, PRK01212, homoserine kinase; Provisional	NA|820aa|down_2|NZ_CP029736.1_128739_131199_-	PRK09436, thrA, bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional	NA|51aa|down_3|NZ_CP029736.1_131283_131436_-	NA	NA|239aa|down_4|NZ_CP029736.1_132441_133158_+	PRK11173, PRK11173, two-component response regulator; Provisional	NA|159aa|down_5|NZ_CP029736.1_133268_133745_-	PRK10756, PRK10756, protein CreA	NA|305aa|down_6|NZ_CP029736.1_133930_134845_+	PRK15121, PRK15121, MDR efflux pump AcrAB transcriptional activator RobA	NA|216aa|down_7|NZ_CP029736.1_134888_135536_-	PRK03482, PRK03482, phosphoglycerate mutase GpmB	NA|179aa|down_8|NZ_CP029736.1_135588_136125_+	PRK05074, PRK05074, non-canonical purine NTP phosphatase	NA|106aa|down_9|NZ_CP029736.1_136693_137011_-	PRK01381, PRK01381, trp operon repressor
GCF_003204135.1_ASM320413v1	NZ_CP029736	Providencia rettgeri strain AR_0082 chromosome, complete genome	2	1324579-1324678	2	CRISPRCasFinder	no		WYL,cas3,DEDDh,RT,csa3,DinG	Orphan	GTGTTGGCTACGTTTAGCTACTC	23	0	0	NA	NA	NA	1	1	Orphan	WYL,cas3,DEDDh,RT,csa3,DinG	NA|281aa|up_5|NZ_CP029736.1_1319391_1320234_+,NA|211aa|down_2|NZ_CP029736.1_1328222_1328855_-	NA|194aa|up_9|NZ_CP029736.1_1317219_1317801_+	COG3539, FimA, P pilus assembly protein, pilin FimA [Cell motility and secretion / Intracellular trafficking and secretion]	NA|185aa|up_8|NZ_CP029736.1_1317793_1318348_+	PRK15287, PRK15287, fimbrial minor subunit StfF	NA|170aa|up_7|NZ_CP029736.1_1318334_1318844_+	PRK15287, PRK15287, fimbrial minor subunit StfF	NA|177aa|up_6|NZ_CP029736.1_1318843_1319374_+	PRK15260, PRK15260, fimbrial protein SteF; Provisional	NA|281aa|up_5|NZ_CP029736.1_1319391_1320234_+	NA	NA|90aa|up_4|NZ_CP029736.1_1320248_1320518_+	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|323aa|up_3|NZ_CP029736.1_1320886_1321855_+	COG4607, CeuA, ABC-type enterochelin transport system, periplasmic component [Inorganic ion transport and metabolism]	NA|321aa|up_2|NZ_CP029736.1_1321858_1322821_+	COG4606, CeuB, ABC-type enterochelin transport system, permease component [Inorganic ion transport and metabolism]	NA|328aa|up_1|NZ_CP029736.1_1322807_1323791_+	COG4605, CeuC, ABC-type enterochelin transport system, permease component [Inorganic ion transport and metabolism]	NA|253aa|up_0|NZ_CP029736.1_1323792_1324551_+	COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]	NA|488aa|down_0|NZ_CP029736.1_1325060_1326524_-	pfam14005, YpjP, YpjP-like protein	NA|523aa|down_1|NZ_CP029736.1_1326563_1328132_-	TIGR00785, Uncharacterized_transporter_HI_0020, anion transporter	NA|211aa|down_2|NZ_CP029736.1_1328222_1328855_-	NA	NA|157aa|down_3|NZ_CP029736.1_1328865_1329336_-	cd07891, CYTH-like_CthTTM-like_1, CYTH-like Clostridium thermocellum TTM-like subgroup 1	NA|324aa|down_4|NZ_CP029736.1_1329500_1330472_-	COG0583, LysR, Transcriptional regulator [Transcription]	NA|167aa|down_5|NZ_CP029736.1_1330714_1331215_-	cd06151, YjgF_YER057c_UK114_like_3, This group of proteins belong to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function	NA|473aa|down_6|NZ_CP029736.1_1331338_1332757_-	COG0665, DadA, Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]	NA|221aa|down_7|NZ_CP029736.1_1333678_1334341_-	pfam06267, DUF1028, Family of unknown function (DUF1028)	NA|520aa|down_8|NZ_CP029736.1_1334504_1336064_+	cd08493, PBP2_DppA_like, The substrate-binding component of an ABC-type dipeptide import system contains the type 2 periplasmic binding fold	NA|316aa|down_9|NZ_CP029736.1_1336119_1337067_+	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
GCF_003204135.1_ASM320413v1	NZ_CP029736	Providencia rettgeri strain AR_0082 chromosome, complete genome	3	4021957-4022120	3	CRISPRCasFinder	no		WYL,cas3,DEDDh,RT,csa3,DinG	Orphan	TTGTTGGCTACATTCGCCAACCCTAGTCACATACTTGTGTATGCTCCTAGGGATT	55	0	0	NA	NA	NA	1	1	Orphan	WYL,cas3,DEDDh,RT,csa3,DinG	NA|241aa|up_3|NZ_CP029736.1_4016938_4017661_-,NA|151aa|down_3|NZ_CP029736.1_4026061_4026514_-	NA|539aa|up_9|NZ_CP029736.1_4010287_4011904_-	PRK10965, PRK10965, multicopper oxidase; Provisional	NA|116aa|up_8|NZ_CP029736.1_4012144_4012492_+	pfam09691, T2SS_PulS_OutS, Type II secretion system pilotin lipoprotein (PulS_OutS)	NA|350aa|up_7|NZ_CP029736.1_4012551_4013601_-	pfam05145, AbrB, Transition state regulatory protein AbrB	NA|211aa|up_6|NZ_CP029736.1_4013798_4014431_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|406aa|up_5|NZ_CP029736.1_4014807_4016025_+	PRK02399, PRK02399, hypothetical protein; Provisional	NA|276aa|up_4|NZ_CP029736.1_4016037_4016865_+	pfam09370, PEP_hydrolase, Phosphoenolpyruvate hydrolase-like	NA|241aa|up_3|NZ_CP029736.1_4016938_4017661_-	NA	NA|299aa|up_2|NZ_CP029736.1_4017832_4018729_-	TIGR01921, Meso-diaminopimelate_D-dehydrogenase, diaminopimelate dehydrogenase	NA|449aa|up_1|NZ_CP029736.1_4019068_4020415_+	cd13134, MATE_like_8, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins	NA|441aa|up_0|NZ_CP029736.1_4020623_4021946_+	COG3681, COG3681, L-cysteine desulfidase [Amino acid transport and metabolism]	NA|323aa|down_0|NZ_CP029736.1_4022179_4023148_-	PRK11537, PRK11537, putative GTP-binding protein YjiA; Provisional	NA|68aa|down_1|NZ_CP029736.1_4023170_4023374_-	COG2879, COG2879, Uncharacterized small protein [Function unknown]	NA|718aa|down_2|NZ_CP029736.1_4023475_4025629_-	PRK15015, PRK15015, carbon starvation protein CstA	NA|151aa|down_3|NZ_CP029736.1_4026061_4026514_-	NA	NA|393aa|down_4|NZ_CP029736.1_4026978_4028157_-	PRK09288, purT, formate-dependent phosphoribosylglycinamide formyltransferase	NA|309aa|down_5|NZ_CP029736.1_4028282_4029209_-	COG2962, RarD, Predicted permeases [General function prediction only]	NA|316aa|down_6|NZ_CP029736.1_4029378_4030326_-	PRK09434, PRK09434, aminoimidazole riboside kinase; Provisional	NA|485aa|down_7|NZ_CP029736.1_4030529_4031984_+	COG1621, SacC, Beta-fructosidases (levanase/invertase) [Carbohydrate transport and metabolism]	NA|332aa|down_8|NZ_CP029736.1_4032014_4033010_-	cd06288, PBP1_sucrose_transcription_regulator, ligand-binding domain of DNA-binding regulatory proteins specific to sucrose that are members of the LacI-GalR family of bacterial transcription repressors	NA|210aa|down_9|NZ_CP029736.1_4033482_4034112_+	COG4566, TtrR, Response regulator [Signal transduction mechanisms]
