assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_003203755.1_ASM320375v1	NZ_CP029692	Escherichia coli strain SD134209 chromosome, complete genome	1	1768361-1768484	1	CRISPRCasFinder	no	DEDDh	DEDDh,DinG,PrimPol,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas14i	Unclear	CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	43	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,PrimPol,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas14i	NA,NA|30aa|down_7|NZ_CP029692.1_1777380_1777470_+	NA|471aa|up_9|NZ_CP029692.1_1757813_1759226_-	PRK09206, PRK09206, pyruvate kinase PykF	NA|70aa|up_8|NZ_CP029692.1_1759782_1759992_+	PRK10292, PRK10292, fumarate hydratase FumD	NA|209aa|up_7|NZ_CP029692.1_1760447_1761074_+	PRK09898, PRK09898, ferredoxin-like protein	NA|701aa|up_6|NZ_CP029692.1_1761094_1763197_+	PRK09849, PRK09849, putative oxidoreductase; Provisional	NA|213aa|up_5|NZ_CP029692.1_1763209_1763848_+	PRK09947, PRK09947, YdhW family putative oxidoreductase system protein	NA|223aa|up_4|NZ_CP029692.1_1763911_1764580_+	TIGR03149, cyt_nit_nrfC, cytochrome c nitrite reductase, Fe-S protein	NA|252aa|up_3|NZ_CP029692.1_1764576_1765332_+	PRK15006, PRK15006, thiosulfate reductase cytochrome B subunit; Provisional	NA|271aa|up_2|NZ_CP029692.1_1765366_1766179_+	PRK09946, PRK09946, hypothetical protein; Provisional	NA|535aa|up_1|NZ_CP029692.1_1766190_1767795_-	PRK09897, PRK09897, FAD-NAD(P)-binding protein	NA|102aa|up_0|NZ_CP029692.1_1767920_1768226_-	PRK11118, PRK11118, putative monooxygenase; Provisional	NA|419aa|down_0|NZ_CP029692.1_1768798_1770055_+	PRK09945, PRK09945, hypothetical protein; Provisional	NA|458aa|down_1|NZ_CP029692.1_1770095_1771469_-	PRK01766, PRK01766, multidrug efflux protein; Reviewed	NA|214aa|down_2|NZ_CP029692.1_1771683_1772325_+	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional	NA|383aa|down_3|NZ_CP029692.1_1772364_1773513_-	PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase	NA|404aa|down_4|NZ_CP029692.1_1773803_1775015_-	PRK11043, PRK11043, Bcr/CflA family multidrug efflux MFS transporter	NA|311aa|down_5|NZ_CP029692.1_1775127_1776060_+	PRK11074, PRK11074, putative DNA-binding transcriptional regulator; Provisional	NA|342aa|down_6|NZ_CP029692.1_1776056_1777082_-	PRK10703, PRK10703, HTH-type transcriptional repressor PurR	NA|30aa|down_7|NZ_CP029692.1_1777380_1777470_+	NA	NA|390aa|down_8|NZ_CP029692.1_1777635_1778805_+	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]	NA|194aa|down_9|NZ_CP029692.1_1778950_1779532_-	PRK10543, PRK10543, superoxide dismutase [Fe]
GCF_003203755.1_ASM320375v1	NZ_CP029692	Escherichia coli strain SD134209 chromosome, complete genome	2	3437013-3437285	1,2,1	PILER-CR,CRISPRCasFinder,CRT	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3	DEDDh,DinG,PrimPol,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas14i	Type I-E	CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC	29,29,29	0	0	NA	NA	I-E:I-E:I-E	4,4,4	4	TypeI-E	DEDDh,DinG,PrimPol,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas14i	NA,NA	NA|254aa|up_9|NZ_CP029692.1_3428825_3429587_-	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional	NA|350aa|up_8|NZ_CP029692.1_3429567_3430617_-	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|160aa|up_7|NZ_CP029692.1_3430613_3431093_-	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|237aa|up_6|NZ_CP029692.1_3431092_3431803_-	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|104aa|up_5|NZ_CP029692.1_3431821_3432133_-	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|108aa|up_4|NZ_CP029692.1_3432326_3432650_-	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|202aa|up_3|NZ_CP029692.1_3432699_3433305_-	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|476aa|up_2|NZ_CP029692.1_3433304_3434732_-	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|303aa|up_1|NZ_CP029692.1_3434733_3435642_-	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|346aa|up_0|NZ_CP029692.1_3435893_3436931_+	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	cas2|98aa|down_0|NZ_CP029692.1_3437381_3437675_-	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	cas1|307aa|down_1|NZ_CP029692.1_3437674_3438595_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas6e|217aa|down_2|NZ_CP029692.1_3438591_3439242_-	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas5|249aa|down_3|NZ_CP029692.1_3439223_3439970_-	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas7|352aa|down_4|NZ_CP029692.1_3439980_3441036_-	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cse2gr11|180aa|down_5|NZ_CP029692.1_3441047_3441587_-	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas8e|521aa|down_6|NZ_CP029692.1_3441583_3443146_-	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cas3|900aa|down_7|NZ_CP029692.1_3443243_3445943_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	NA|51aa|down_8|NZ_CP029692.1_3446136_3446289_-	pfam01848, HOK_GEF, Hok/gef family	NA|245aa|down_9|NZ_CP029692.1_3446553_3447288_-	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase
GCF_003203755.1_ASM320375v1	NZ_CP029692	Escherichia coli strain SD134209 chromosome, complete genome	3	3462987-3463381	3,2,2	CRISPRCasFinder,CRT,PILER-CR	no	cas3	DEDDh,DinG,PrimPol,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas14i	Unclear	CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAAC,CGGTTTATCCCCGCTGGCGCGGGGAAC	29,27,27	0	0	NA	NA	I-E:I-E:I-E	6,6,6	6	Unclear	DEDDh,DinG,PrimPol,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas14i	NA,NA|47aa|down_1|NZ_CP029692.1_3464530_3464671_+	NA|424aa|up_9|NZ_CP029692.1_3451631_3452903_+	PRK10015, PRK10015, oxidoreductase; Provisional	NA|87aa|up_8|NZ_CP029692.1_3452893_3453154_+	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|192aa|up_7|NZ_CP029692.1_3453170_3453746_+	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|287aa|up_6|NZ_CP029692.1_3453893_3454754_-	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|260aa|up_5|NZ_CP029692.1_3454750_3455530_-	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|470aa|up_4|NZ_CP029692.1_3455507_3456917_-	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	NA|485aa|up_3|NZ_CP029692.1_3456938_3458393_-	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|262aa|up_2|NZ_CP029692.1_3458462_3459248_-	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs	NA|426aa|up_1|NZ_CP029692.1_3459566_3460844_+	cd06174, MFS, Major Facilitator Superfamily	NA|493aa|up_0|NZ_CP029692.1_3460869_3462348_+	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|224aa|down_0|NZ_CP029692.1_3463720_3464392_-	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|47aa|down_1|NZ_CP029692.1_3464530_3464671_+	NA	NA|291aa|down_2|NZ_CP029692.1_3464684_3465557_+	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|433aa|down_3|NZ_CP029692.1_3465616_3466915_-	PRK00077, eno, enolase; Provisional	NA|546aa|down_4|NZ_CP029692.1_3467002_3468640_-	PRK05380, pyrG, CTP synthetase; Validated	NA|264aa|down_5|NZ_CP029692.1_3468867_3469659_-	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|112aa|down_6|NZ_CP029692.1_3469729_3470065_-	PRK09907, PRK09907, endoribonuclease MazF	NA|83aa|down_7|NZ_CP029692.1_3470064_3470313_-	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE	NA|745aa|down_8|NZ_CP029692.1_3470390_3472625_-	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|919aa|down_9|NZ_CP029692.1_3474029_3476786_+	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional
GCF_003203755.1_ASM320375v1	NZ_CP029690	Escherichia coli strain SD134209 plasmid pSD134209-1, complete sequence	1	175804-175961	1	PILER-CR	no			Orphan	CCGTACCCGGTATAGTGGAT	20	0	0	NA	NA	NA	2	2	Orphan	DEDDh,DinG,PrimPol,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas14i	NA|88aa|up_9|NZ_CP029690.1_166475_166739_+,NA|235aa|up_8|NZ_CP029690.1_166966_167671_+,NA|140aa|up_7|NZ_CP029690.1_167703_168123_-,NA|81aa|up_6|NZ_CP029690.1_168235_168478_+,NA|122aa|up_5|NZ_CP029690.1_168512_168878_+,NA|172aa|down_0|NZ_CP029690.1_176150_176666_-,NA|386aa|down_3|NZ_CP029690.1_182349_183507_-,NA|274aa|down_5|NZ_CP029690.1_184705_185527_-,NA|67aa|down_7|NZ_CP029690.1_186513_186714_-	NA|88aa|up_9|NZ_CP029690.1_166475_166739_+	NA	NA|235aa|up_8|NZ_CP029690.1_166966_167671_+	NA	NA|140aa|up_7|NZ_CP029690.1_167703_168123_-	NA	NA|81aa|up_6|NZ_CP029690.1_168235_168478_+	NA	NA|122aa|up_5|NZ_CP029690.1_168512_168878_+	NA	NA|396aa|up_4|NZ_CP029690.1_168877_170065_+	pfam04986, Y2_Tnp, Putative transposase	NA|203aa|up_3|NZ_CP029690.1_172673_173282_+	pfam13752, DUF4165, Domain of unknown function (DUF4165)	NA|84aa|up_2|NZ_CP029690.1_173288_173540_+	pfam12245, Big_3_2, Bacterial Ig-like domain (group 3)	NA|199aa|up_1|NZ_CP029690.1_173695_174292_+	pfam13750, Big_3_3, Bacterial Ig-like domain (group 3)	NA|294aa|up_0|NZ_CP029690.1_174683_175565_+	pfam16441, DUF5038, Domain of unknown function (DUF5038)	NA|172aa|down_0|NZ_CP029690.1_176150_176666_-	NA	NA|819aa|down_1|NZ_CP029690.1_177316_179773_-	pfam13750, Big_3_3, Bacterial Ig-like domain (group 3)	NA|559aa|down_2|NZ_CP029690.1_180409_182086_-	pfam13708, DUF4942, Domain of unknown function (DUF4942)	NA|386aa|down_3|NZ_CP029690.1_182349_183507_-	NA	NA|275aa|down_4|NZ_CP029690.1_183866_184691_+	TIGR00571, DNA_adenine_methylase, DNA adenine methylase (dam)	NA|274aa|down_5|NZ_CP029690.1_184705_185527_-	NA	NA|236aa|down_6|NZ_CP029690.1_185809_186517_-	cd10719, DnaJ_zf, Zinc finger domain of DnaJ and HSP40	NA|67aa|down_7|NZ_CP029690.1_186513_186714_-	NA	NA|359aa|down_8|NZ_CP029690.1_186731_187808_-	TIGR00180, Probable_chromosome-partitioning_protein_ParB, ParB/RepB/Spo0J family partition protein	NA|NA	NA
