assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_003203655.1_ASM320365v1	NZ_CP029671	Staphylococcus aureus strain AR_0222 chromosome, complete genome	1	596307-596388	1	CRISPRCasFinder	no		DEDDh,cas3,WYL,RT,csa3,DinG	Orphan	TTCTACAGGCAATGCAAGTTGGGG	24	1	1	596331-596364	NZ_CP029671.1_122038-122005	NA	1	1	Orphan	DEDDh,cas3,WYL,RT,csa3,DinG	NA,NA|38aa|down_1|NZ_CP029671.1_597371_597485_-	NA|417aa|up_9|NZ_CP029671.1_586734_587985_-	TIGR01979, Probable_cysteine_desulfurase, cysteine desulfurases, SufSfamily	NA|436aa|up_8|NZ_CP029671.1_588090_589398_-	COG0719, SufB, Cysteine desulfurase activator SufB [Posttranslational modification, protein turnover, chaperones]	NA|254aa|up_7|NZ_CP029671.1_589495_590257_-	COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]	NA|283aa|up_6|NZ_CP029671.1_590584_591433_+	COG2035, COG2035, Predicted membrane protein [Function unknown]	NA|65aa|up_5|NZ_CP029671.1_591669_591864_-	COG3237, COG3237, Uncharacterized protein conserved in bacteria [Function unknown]	NA|274aa|up_4|NZ_CP029671.1_592217_593039_-	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]	NA|232aa|up_3|NZ_CP029671.1_593056_593752_-	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism]	NA|342aa|up_2|NZ_CP029671.1_593744_594770_-	COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]	NA|99aa|up_1|NZ_CP029671.1_595019_595316_-	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|129aa|up_0|NZ_CP029671.1_595308_595695_-	COG1658, COG1658, Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair]	NA|293aa|down_0|NZ_CP029671.1_596491_597370_-	COG3878, COG3878, Uncharacterized protein conserved in bacteria [Function unknown]	NA|38aa|down_1|NZ_CP029671.1_597371_597485_-	NA	NA|127aa|down_2|NZ_CP029671.1_597548_597929_-	PRK01202, PRK01202, glycine cleavage system protein GcvH	NA|119aa|down_3|NZ_CP029671.1_598086_598443_-	cd03036, ArsC_like, Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC	NA|107aa|down_4|NZ_CP029671.1_598586_598907_+	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|180aa|down_5|NZ_CP029671.1_599057_599597_-	cd02135, YdjA-like, nitroreductase family protein similar to Escherichia coli YdjA	NA|239aa|down_6|NZ_CP029671.1_599679_600396_-	PRK13575, PRK13575, type I 3-dehydroquinate dehydratase	NA|141aa|down_7|NZ_CP029671.1_600543_600966_+	TIGR03561, organ_hyd_perox, peroxiredoxin, Ohr subfamily	NA|165aa|down_8|NZ_CP029671.1_601364_601859_+	pfam13420, Acetyltransf_4, Acetyltransferase (GNAT) domain	NA|206aa|down_9|NZ_CP029671.1_602013_602631_+	COG1279, COG1279, Lysine efflux permease [General function prediction only]
GCF_003203655.1_ASM320365v1	NZ_CP029671	Staphylococcus aureus strain AR_0222 chromosome, complete genome	2	661289-661367	2	CRISPRCasFinder	no	cas3	DEDDh,cas3,WYL,RT,csa3,DinG	Unclear	AGAATTTCGAAAAGAAATTCTACA	24	0	0	NA	NA	NA	1	1	Unclear	DEDDh,cas3,WYL,RT,csa3,DinG	NA,NA|36aa|down_5|NZ_CP029671.1_668845_668953_-,NA|35aa|down_7|NZ_CP029671.1_670385_670490_-	NA|301aa|up_9|NZ_CP029671.1_650170_651073_+	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]	NA|196aa|up_8|NZ_CP029671.1_651315_651903_-	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed	NA|315aa|up_7|NZ_CP029671.1_652466_653411_-	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA	NA|332aa|up_6|NZ_CP029671.1_653521_654517_-	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|304aa|up_5|NZ_CP029671.1_654513_655425_-	COG1660, COG1660, Predicted P-loop-containing kinase [General function prediction only]	NA|312aa|up_4|NZ_CP029671.1_656310_657246_-	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase	NA|480aa|up_3|NZ_CP029671.1_657312_658752_-	sd00008, TPR_YbbN, C-terminal Tetratricopeptide repeat (TPR) region of YbbN and similar motifs	NA|162aa|up_2|NZ_CP029671.1_658759_659245_-	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins	NA|280aa|up_1|NZ_CP029671.1_659252_660092_-	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed	NA|311aa|up_0|NZ_CP029671.1_660097_661030_-	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional	NA|949aa|down_0|NZ_CP029671.1_661693_664540_-	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|662aa|down_1|NZ_CP029671.1_664547_666533_-	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|79aa|down_2|NZ_CP029671.1_666801_667038_-	COG4897, CsbA, Uncharacterized protein conserved in bacteria [Function unknown]	NA|217aa|down_3|NZ_CP029671.1_667034_667685_-	pfam12917, HD_2, HD containing hydrolase-like enzyme	NA|280aa|down_4|NZ_CP029671.1_667858_668698_-	COG3942, COG3942, Surface antigen [General function prediction only]	NA|36aa|down_5|NZ_CP029671.1_668845_668953_-	NA	NA|370aa|down_6|NZ_CP029671.1_669106_670217_-	PRK00578, prfB, peptide chain release factor 2; Validated	NA|35aa|down_7|NZ_CP029671.1_670385_670490_-	NA	NA|844aa|down_8|NZ_CP029671.1_670531_673063_-	PRK12904, PRK12904, preprotein translocase subunit SecA; Reviewed	NA|191aa|down_9|NZ_CP029671.1_673476_674049_-	COG1544, COG1544, Ribosome-associated protein Y (PSrp-1) [Translation, ribosomal structure and biogenesis]
GCF_003203655.1_ASM320365v1	NZ_CP029671	Staphylococcus aureus strain AR_0222 chromosome, complete genome	3	1057506-1057608	3	CRISPRCasFinder	no		DEDDh,cas3,WYL,RT,csa3,DinG	Orphan	CAAATTTAATACTCAATTCATATA	24	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas3,WYL,RT,csa3,DinG	NA|179aa|up_7|NZ_CP029671.1_1049124_1049661_+,NA|221aa|up_1|NZ_CP029671.1_1055752_1056415_+,NA|33aa|down_0|NZ_CP029671.1_1058283_1058382_-,NA|128aa|down_6|NZ_CP029671.1_1064629_1065013_+,NA|70aa|down_8|NZ_CP029671.1_1065837_1066047_+	NA|91aa|up_9|NZ_CP029671.1_1047357_1047630_+	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|235aa|up_8|NZ_CP029671.1_1048028_1048733_+	pfam02452, PemK_toxin, PemK-like, MazF-like toxin of type II toxin-antitoxin system	NA|179aa|up_7|NZ_CP029671.1_1049124_1049661_+	NA	NA|514aa|up_6|NZ_CP029671.1_1049773_1051315_-	PRK00074, guaA, GMP synthase; Reviewed	NA|489aa|up_5|NZ_CP029671.1_1051339_1052806_-	PRK05567, PRK05567, inosine 5'-monophosphate dehydrogenase; Reviewed	NA|423aa|up_4|NZ_CP029671.1_1052843_1054112_-	TIGR03173, pbuX, xanthine permease	NA|193aa|up_3|NZ_CP029671.1_1054111_1054690_-	PRK09219, PRK09219, xanthine phosphoribosyltransferase; Validated	NA|136aa|up_2|NZ_CP029671.1_1055202_1055610_+	pfam11181, YflT, Heat induced stress protein YflT	NA|221aa|up_1|NZ_CP029671.1_1055752_1056415_+	NA	NA|319aa|up_0|NZ_CP029671.1_1056532_1057489_+	PRK05035, PRK05035, electron transport complex protein RnfC; Provisional	NA|33aa|down_0|NZ_CP029671.1_1058283_1058382_-	NA	NA|463aa|down_1|NZ_CP029671.1_1058466_1059855_+	COG1823, COG1823, Predicted Na+/dicarboxylate symporter [General function prediction only]	NA|252aa|down_2|NZ_CP029671.1_1059934_1060690_-	cd02146, NfsA-like, nitroreductase similar to Escherichia coli NfsA	NA|190aa|down_3|NZ_CP029671.1_1061181_1061751_+	TIGR03137, AhpC, peroxiredoxin	NA|508aa|down_4|NZ_CP029671.1_1061766_1063290_+	PRK15317, PRK15317, alkyl hydroperoxide reductase subunit F; Provisional	NA|209aa|down_5|NZ_CP029671.1_1063733_1064360_+	NF033193, lipo_NDxxF, NDxxF motif lipoprotein	NA|128aa|down_6|NZ_CP029671.1_1064629_1065013_+	NA	NA|194aa|down_7|NZ_CP029671.1_1065078_1065660_-	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]	NA|70aa|down_8|NZ_CP029671.1_1065837_1066047_+	NA	NA|84aa|down_9|NZ_CP029671.1_1066085_1066337_-	COG2261, COG2261, Predicted membrane protein [Function unknown]
GCF_003203655.1_ASM320365v1	NZ_CP029671	Staphylococcus aureus strain AR_0222 chromosome, complete genome	4	1670303-1670436	1	PILER-CR	no		DEDDh,cas3,WYL,RT,csa3,DinG	Orphan	TATTGAAGAAGATACAA	17	2	2	1670320-1670365|1670383-1670419	NZ_CP029671.1_1666670-1666715|NZ_CP029671.1_1666733-1666769	NA	2	2	Orphan	DEDDh,cas3,WYL,RT,csa3,DinG	NA|67aa|up_1|NZ_CP029671.1_1663846_1664047_+,NA|78aa|down_5|NZ_CP029671.1_1679137_1679371_+,NA|103aa|down_6|NZ_CP029671.1_1679478_1679787_-,NA|89aa|down_7|NZ_CP029671.1_1679930_1680197_-	NA|426aa|up_9|NZ_CP029671.1_1653843_1655121_+	cd17319, MFS_ExuT_GudP_like, Hexuronate transporter, Glucarate transporter, and similar transporters of the Major Facilitator Superfamily	NA|608aa|up_8|NZ_CP029671.1_1655597_1657421_+	COG1289, COG1289, Predicted membrane protein [Function unknown]	NA|139aa|up_7|NZ_CP029671.1_1657559_1657976_+	COG4876, COG4876, Uncharacterized protein conserved in bacteria [Function unknown]	NA|231aa|up_6|NZ_CP029671.1_1658206_1658899_+	COG2357, COG2357, PpGpp synthetase catalytic domain [General function prediction only]	NA|255aa|up_5|NZ_CP029671.1_1659063_1659828_+	cd01106, HTH_TipAL-Mta, Helix-Turn-Helix DNA binding domain of the transcription regulators TipAL, Mta, and SkgA	NA|227aa|up_4|NZ_CP029671.1_1659980_1660661_+	COG1802, GntR, Transcriptional regulators [Transcription]	NA|518aa|up_3|NZ_CP029671.1_1660684_1662238_+	TIGR01314, gntK_FGGY, gluconate kinase, FGGY type	NA|453aa|up_2|NZ_CP029671.1_1662354_1663713_+	TIGR00791, Gluconate_permease, gluconate transporter	NA|67aa|up_1|NZ_CP029671.1_1663846_1664047_+	NA	NA|1039aa|up_0|NZ_CP029671.1_1664181_1667298_+	pfam10425, SdrG_C_C, C-terminus of bacterial fibrinogen-binding adhesin	NA|289aa|down_0|NZ_CP029671.1_1671044_1671911_+	COG1210, GalU, UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]	NA|248aa|down_1|NZ_CP029671.1_1672121_1672865_-	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|119aa|down_2|NZ_CP029671.1_1673188_1673545_+	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|1244aa|down_3|NZ_CP029671.1_1673849_1677581_+	pfam18483, Bact_lectin, Bacterial lectin	NA|359aa|down_4|NZ_CP029671.1_1677964_1679041_+	cd06173, MFS_MefA_like, Macrolide efflux protein A and similar proteins of the Major Facilitator Superfamily of transporters	NA|78aa|down_5|NZ_CP029671.1_1679137_1679371_+	NA	NA|103aa|down_6|NZ_CP029671.1_1679478_1679787_-	NA	NA|89aa|down_7|NZ_CP029671.1_1679930_1680197_-	NA	NA|603aa|down_8|NZ_CP029671.1_1680480_1682289_-	cd05799, PGM2, This CD includes PGM2 (phosphoglucomutase 2) and PGM2L1 (phosphoglucomutase 2-like 1)	NA|131aa|down_9|NZ_CP029671.1_1682420_1682813_+	cd03425, MutT_pyrophosphohydrolase, The MutT pyrophosphohydrolase is a prototypical Nudix hydrolase that catalyzes the hydrolysis of nucleoside and deoxynucleoside triphosphates (NTPs and dNTPs) by substitution at a beta-phosphorus to yield a nucleotide monophosphate (NMP) and inorganic pyrophosphate (PPi)
GCF_003203655.1_ASM320365v1	NZ_CP029671	Staphylococcus aureus strain AR_0222 chromosome, complete genome	5	1746235-1746313	4	CRISPRCasFinder	no		DEDDh,cas3,WYL,RT,csa3,DinG	Orphan	TGCAAGTTGGCGGGGCCCCAACA	23	1	5	1746258-1746290|1746258-1746290|1746258-1746290|1746258-1746290|1746258-1746290	NZ_CP029671.1_596018-596050|NZ_CP029671.1_648478-648510|NZ_CP029671.1_648534-648566|NZ_CP029671.1_648590-648622|NZ_CP029671.1_2136212-2136180	NA	1	1	Orphan	DEDDh,cas3,WYL,RT,csa3,DinG	NA|220aa|up_3|NZ_CP029671.1_1743159_1743819_-,NA|36aa|up_0|NZ_CP029671.1_1745808_1745916_+,NA	NA|693aa|up_9|NZ_CP029671.1_1735621_1737700_-	COG0025, NhaP, NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]	NA|470aa|up_8|NZ_CP029671.1_1737837_1739247_-	COG1113, AnsP, Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]	NA|269aa|up_7|NZ_CP029671.1_1739532_1740339_+	TIGR03729, acc_ester, putative phosphoesterase	NA|219aa|up_6|NZ_CP029671.1_1740401_1741058_-	COG4990, COG4990, Uncharacterized protein conserved in bacteria [Function unknown]	NA|158aa|up_5|NZ_CP029671.1_1741170_1741644_+	COG3708, COG3708, Uncharacterized protein conserved in bacteria [Function unknown]	NA|404aa|up_4|NZ_CP029671.1_1741766_1742978_-	cd17320, MFS_MdfA_MDR_like, Multidrug transporter MdfA and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily	NA|220aa|up_3|NZ_CP029671.1_1743159_1743819_-	NA	NA|381aa|up_2|NZ_CP029671.1_1743878_1745021_-	TIGR00045, Glycerate_kinase, glycerate kinase	NA|129aa|up_1|NZ_CP029671.1_1745288_1745675_+	COG2246, COG2246, Predicted membrane protein [Function unknown]	NA|36aa|up_0|NZ_CP029671.1_1745808_1745916_+	NA	NA|588aa|down_0|NZ_CP029671.1_1746618_1748382_+	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|578aa|down_1|NZ_CP029671.1_1748406_1750140_+	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|229aa|down_2|NZ_CP029671.1_1750592_1751279_+	COG0132, BioD, Dethiobiotin synthetase [Coenzyme metabolism]	NA|453aa|down_3|NZ_CP029671.1_1751256_1752615_+	TIGR00508, hypothetical_protein_DESPIG_00326, adenosylmethionine-8-amino-7-oxononanoate transaminase	NA|336aa|down_4|NZ_CP029671.1_1752616_1753624_+	PRK06256, PRK06256, biotin synthase; Validated	NA|372aa|down_5|NZ_CP029671.1_1753601_1754717_+	COG0156, BioF, 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism]	NA|231aa|down_6|NZ_CP029671.1_1754727_1755420_+	COG1424, BioW, Pimeloyl-CoA synthetase [Coenzyme metabolism]	NA|156aa|down_7|NZ_CP029671.1_1755430_1755898_+	pfam06177, QueT, QueT transporter	NA|326aa|down_8|NZ_CP029671.1_1755949_1756927_-	TIGR01002, synergohymenotropic_toxin, beta-channel forming cytolysin	NA|316aa|down_9|NZ_CP029671.1_1756928_1757876_-	pfam07968, Leukocidin, Leukocidin/Hemolysin toxin family
GCF_003203655.1_ASM320365v1	NZ_CP029671	Staphylococcus aureus strain AR_0222 chromosome, complete genome	6	1910856-1910936	5	CRISPRCasFinder	no		DEDDh,cas3,WYL,RT,csa3,DinG	Orphan	CAAGTTGGCGGGGCCCCAACACAGA	25	1	13	1910881-1910911|1910881-1910911|1910881-1910911|1910881-1910911|1910881-1910911|1910881-1910911|1910881-1910911|1910881-1910911|1910881-1910911|1910881-1910911|1910881-1910911|1910881-1910911|1910881-1910911	NZ_CP029671.1_648538-648568|NZ_CP029671.1_648594-648624|NZ_CP029671.1_32267-32297|NZ_CP029671.1_122079-122049|NZ_CP029671.1_327988-327958|NZ_CP029671.1_430053-430083|NZ_CP029671.1_596022-596052|NZ_CP029671.1_648482-648512|NZ_CP029671.1_1096345-1096315|NZ_CP029671.1_1394367-1394397|NZ_CP029671.1_1921682-1921712|NZ_CP029671.1_2219805-2219835|NZ_CP029671.1_2528773-2528743	NA	1	1	Orphan	DEDDh,cas3,WYL,RT,csa3,DinG	NA,NA|62aa|down_0|NZ_CP029671.1_1910977_1911163_-,NA|84aa|down_5|NZ_CP029671.1_1914302_1914554_-,NA|106aa|down_8|NZ_CP029671.1_1919675_1919993_-,NA|55aa|down_9|NZ_CP029671.1_1920237_1920402_-	NA|202aa|up_9|NZ_CP029671.1_1903748_1904354_+	COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]	NA|335aa|up_8|NZ_CP029671.1_1904523_1905528_+	PRK07688, PRK07688, thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated	NA|169aa|up_7|NZ_CP029671.1_1905558_1906065_+	COG0521, MoaB, Molybdopterin biosynthesis enzymes [Coenzyme metabolism]	NA|165aa|up_6|NZ_CP029671.1_1906066_1906561_-	PRK09364, moaC, cyclic pyranopterin monophosphate synthase MoaC	NA|420aa|up_5|NZ_CP029671.1_1906623_1907883_+	cd00887, MoeA, MoeA family	NA|162aa|up_4|NZ_CP029671.1_1907879_1908365_+	COG1763, MobB, Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]	NA|149aa|up_3|NZ_CP029671.1_1908378_1908825_+	COG0314, MoaE, Molybdopterin converting factor, large subunit [Coenzyme metabolism]	NA|78aa|up_2|NZ_CP029671.1_1908830_1909064_+	cd00754, Ubl_MoaD, ubiquitin-like (Ubl) domain found in molybdenum cofactor biosynthesis protein D (MoaD) and similar proteins	NA|200aa|up_1|NZ_CP029671.1_1909070_1909670_+	PRK00317, mobA, molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed	NA|341aa|up_0|NZ_CP029671.1_1909689_1910712_+	TIGR02666, Cyclic_pyranopterin_monophosphate_synthase, molybdenum cofactor biosynthesis protein A, bacterial	NA|62aa|down_0|NZ_CP029671.1_1910977_1911163_-	NA	NA|117aa|down_1|NZ_CP029671.1_1911288_1911639_+	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|404aa|down_2|NZ_CP029671.1_1911740_1912952_-	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily	NA|147aa|down_3|NZ_CP029671.1_1912944_1913385_-	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|255aa|down_4|NZ_CP029671.1_1913546_1914311_+	pfam13468, Glyoxalase_3, Glyoxalase-like domain	NA|84aa|down_5|NZ_CP029671.1_1914302_1914554_-	NA	NA|422aa|down_6|NZ_CP029671.1_1914942_1916208_+	COG2348, COG2348, Peptidoglycan interpeptide bridge formation enzyme [Cell wall/membrane/envelope biogenesis]	NA|1056aa|down_7|NZ_CP029671.1_1916324_1919492_+	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms]	NA|106aa|down_8|NZ_CP029671.1_1919675_1919993_-	NA	NA|55aa|down_9|NZ_CP029671.1_1920237_1920402_-	NA
GCF_003203655.1_ASM320365v1	NZ_CP029671	Staphylococcus aureus strain AR_0222 chromosome, complete genome	7	2018894-2018979	6	CRISPRCasFinder	no	csa3	DEDDh,cas3,WYL,RT,csa3,DinG	Type I-A	ACTAATGATACGCAAAAATCAGTTGG	26	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas3,WYL,RT,csa3,DinG	NA,NA|53aa|down_7|NZ_CP029671.1_2029941_2030100_-,NA|35aa|down_8|NZ_CP029671.1_2030779_2030884_+,NA|364aa|down_9|NZ_CP029671.1_2031316_2032408_-	NA|396aa|up_9|NZ_CP029671.1_1994138_1995326_+	cd04193, UDPGlcNAc_PPase, UDPGlcNAc pyrophosphorylase catalayzes the synthesis of UDPGlcNAc	NA|228aa|up_8|NZ_CP029671.1_1995344_1996028_+	COG1272, COG1272, Predicted membrane protein, hemolysin III homolog [General function prediction only]	NA|448aa|up_7|NZ_CP029671.1_1996204_1997548_+	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|158aa|up_6|NZ_CP029671.1_1997646_1998120_+	pfam17080, SepA, Multidrug Resistance efflux pump	NA|481aa|up_5|NZ_CP029671.1_1998442_1999885_+	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|355aa|up_4|NZ_CP029671.1_2000032_2001097_+	pfam10609, ParA, NUBPL iron-transfer P-loop NTPase	NA|303aa|up_3|NZ_CP029671.1_2007337_2008246_+	cd09989, Arginase, Arginase family	NA|270aa|up_2|NZ_CP029671.1_2008434_2009244_+	COG1624, COG1624, Uncharacterized conserved protein [Function unknown]	NA|311aa|up_1|NZ_CP029671.1_2009245_2010178_+	COG4856, COG4856, Uncharacterized protein conserved in bacteria [Function unknown]	NA|452aa|up_0|NZ_CP029671.1_2010204_2011560_+	PRK14316, glmM, phosphoglucosamine mutase; Provisional	NA|369aa|down_0|NZ_CP029671.1_2019601_2020708_-	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional	NA|145aa|down_1|NZ_CP029671.1_2020707_2021142_-	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]	NA|711aa|down_2|NZ_CP029671.1_2021153_2023286_-	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|513aa|down_3|NZ_CP029671.1_2023320_2024859_-	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]	NA|602aa|down_4|NZ_CP029671.1_2025539_2027345_+	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|261aa|down_5|NZ_CP029671.1_2027576_2028359_+	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|286aa|down_6|NZ_CP029671.1_2028426_2029284_+	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|53aa|down_7|NZ_CP029671.1_2029941_2030100_-	NA	NA|35aa|down_8|NZ_CP029671.1_2030779_2030884_+	NA	NA|364aa|down_9|NZ_CP029671.1_2031316_2032408_-	NA
GCF_003203655.1_ASM320365v1	NZ_CP029671	Staphylococcus aureus strain AR_0222 chromosome, complete genome	8	2031219-2031300	7	CRISPRCasFinder	no	csa3	DEDDh,cas3,WYL,RT,csa3,DinG	Type I-A	AAGAAGCCCCTAACAACTAAAGTTG	25	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas3,WYL,RT,csa3,DinG	NA|53aa|up_1|NZ_CP029671.1_2029941_2030100_-,NA|35aa|up_0|NZ_CP029671.1_2030779_2030884_+,NA|364aa|down_0|NZ_CP029671.1_2031316_2032408_-,NA|77aa|down_5|NZ_CP029671.1_2036194_2036425_+	NA|2482aa|up_9|NZ_CP029671.1_2011837_2019283_+	TIGR04263, cell_wall_surface_anchor_family_protein, SasC/Mrp/FmtB intercellular aggregation domain	NA|369aa|up_8|NZ_CP029671.1_2019601_2020708_-	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional	NA|145aa|up_7|NZ_CP029671.1_2020707_2021142_-	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]	NA|711aa|up_6|NZ_CP029671.1_2021153_2023286_-	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|513aa|up_5|NZ_CP029671.1_2023320_2024859_-	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]	NA|602aa|up_4|NZ_CP029671.1_2025539_2027345_+	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|261aa|up_3|NZ_CP029671.1_2027576_2028359_+	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|286aa|up_2|NZ_CP029671.1_2028426_2029284_+	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|53aa|up_1|NZ_CP029671.1_2029941_2030100_-	NA	NA|35aa|up_0|NZ_CP029671.1_2030779_2030884_+	NA	NA|364aa|down_0|NZ_CP029671.1_2031316_2032408_-	NA	NA|326aa|down_1|NZ_CP029671.1_2032673_2033651_-	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	csa3|107aa|down_2|NZ_CP029671.1_2033652_2033973_-	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|222aa|down_3|NZ_CP029671.1_2034124_2034790_+	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5	NA|313aa|down_4|NZ_CP029671.1_2035225_2036164_+	COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism]	NA|77aa|down_5|NZ_CP029671.1_2036194_2036425_+	NA	NA|458aa|down_6|NZ_CP029671.1_2037096_2038470_+	pfam01878, EVE, EVE domain	NA|138aa|down_7|NZ_CP029671.1_2038926_2039340_+	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function    prediction only]	NA|148aa|down_8|NZ_CP029671.1_2039539_2039983_+	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism]	NA|237aa|down_9|NZ_CP029671.1_2040103_2040814_-	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase
GCF_003203655.1_ASM320365v1	NZ_CP029671	Staphylococcus aureus strain AR_0222 chromosome, complete genome	9	2543353-2543437	8	CRISPRCasFinder	no		DEDDh,cas3,WYL,RT,csa3,DinG	Orphan	TTCTACAGGCAATGCAAGTTGGGGTG	26	1	3	2543379-2543411|2543379-2543411|2543379-2543411	NZ_CP029671.1_122037-122005|NZ_CP029671.1_655777-655809|NZ_CP029671.1_1295739-1295707	NA	1	1	Orphan	DEDDh,cas3,WYL,RT,csa3,DinG	NA,NA	NA|190aa|up_9|NZ_CP029671.1_2533982_2534552_+	TIGR00482, Probable_nicotinate-nucleotide_adenylyltransferase, nicotinate (nicotinamide) nucleotide adenylyltransferase	NA|195aa|up_8|NZ_CP029671.1_2534541_2535126_+	COG1713, COG1713, Predicted HD superfamily hydrolase involved in NAD metabolism [Coenzyme metabolism]	NA|118aa|up_7|NZ_CP029671.1_2535126_2535480_+	COG0799, COG0799, Uncharacterized homolog of plant Iojap protein [Function unknown]	NA|239aa|up_6|NZ_CP029671.1_2535482_2536199_+	pfam13649, Methyltransf_25, Methyltransferase domain	NA|229aa|up_5|NZ_CP029671.1_2536238_2536925_+	COG1555, ComEA, DNA uptake protein and related DNA-binding proteins [DNA replication, recombination, and repair]	NA|154aa|up_4|NZ_CP029671.1_2537016_2537478_+	TIGR02571, putative_dCMP_deaminase, ComE operon protein 2	NA|716aa|up_3|NZ_CP029671.1_2537536_2539684_+	COG2333, ComEC, Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]	NA|325aa|up_2|NZ_CP029671.1_2539740_2540715_+	PRK05574, holA, DNA polymerase III subunit delta; Reviewed	NA|84aa|up_1|NZ_CP029671.1_2540759_2541011_-	PRK00239, rpsT, 30S ribosomal protein S20; Reviewed	NA|608aa|up_0|NZ_CP029671.1_2541356_2543180_+	PRK05433, PRK05433, GTP-binding protein LepA; Provisional	NA|375aa|down_0|NZ_CP029671.1_2543745_2544870_+	PRK08599, PRK08599, oxygen-independent coproporphyrinogen III oxidase	NA|326aa|down_1|NZ_CP029671.1_2544969_2545947_+	TIGR00331, Heat-inducible_transcription_repressor_HrcA, heat shock gene repressor HrcA	NA|209aa|down_2|NZ_CP029671.1_2545978_2546605_+	PRK14140, PRK14140, heat shock protein GrpE; Provisional	NA|611aa|down_3|NZ_CP029671.1_2546673_2548506_+	PRK00290, dnaK, molecular chaperone DnaK; Provisional	NA|380aa|down_4|NZ_CP029671.1_2548641_2549781_+	PRK14280, PRK14280, molecular chaperone DnaJ	NA|313aa|down_5|NZ_CP029671.1_2549784_2550723_+	pfam06325, PrmA, Ribosomal protein L11 methyltransferase (PrmA)	NA|251aa|down_6|NZ_CP029671.1_2550724_2551477_+	COG1385, COG1385, Uncharacterized protein conserved in bacteria [Function unknown]	NA|449aa|down_7|NZ_CP029671.1_2551483_2552830_+	COG0621, MiaB, 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis]	NA|59aa|down_8|NZ_CP029671.1_2553122_2553299_+	PRK00270, rpsU, 30S ribosomal protein S21; Reviewed	NA|228aa|down_9|NZ_CP029671.1_2553542_2554226_+	COG1030, NfeD, Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones]
