The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP029657	Staphylococcus aureus strain AR_0468 chromosome, complete genome	2911284	756768	764589	2911284		Hokovirus(16.67%)	10	NA	NA
WP_000244415.1|756768_757824_-	HAMP domain-containing histidine kinase	NA	A0A1V0SGX0	Hokovirus	29.8	3.6e-14
WP_000149344.1|757823_758510_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_001037807.1|758484_758958_-	DoxX family protein	NA	NA	NA	NA	NA
WP_001093562.1|759300_759741_-	DM13 domain-containing protein	NA	NA	NA	NA	NA
WP_000604990.1|760020_760605_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001062972.1|760703_761417_-	7-carboxy-7-deazaguanine synthase QueE	NA	A0A1U9WRB6	Streptococcus_virus	43.5	6.5e-52
WP_000941336.1|761420_761840_-	6-carboxytetrahydropterin synthase QueD	NA	S4U060	uncultured_phage	28.7	6.3e-07
WP_000446724.1|761841_762510_-	7-cyano-7-deazaguanine synthase QueC	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	57.5	9.6e-66
WP_000604514.1|762860_763454_+	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	42.9	4.4e-38
WP_001217796.1|763437_764589_+	anthranilate synthase component I family protein	NA	S4VNU7	Pandoravirus	35.7	6.0e-23
>prophage 2
NZ_CP029657	Staphylococcus aureus strain AR_0468 chromosome, complete genome	2911284	776560	791201	2911284		uncultured_Caudovirales_phage(50.0%)	14	NA	NA
WP_000663030.1|776560_777619_+	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	26.7	7.9e-22
WP_000197262.1|777957_778500_+	5'-3'-deoxyribonucleotidase	NA	NA	NA	NA	NA
WP_000429006.1|779378_780296_-	diacylglycerol kinase family lipid kinase	NA	A0A1V0SBJ0	Catovirus	22.0	2.1e-07
WP_031760357.1|780386_780488_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000193751.1|780565_782071_-	peptide MFS transporter	NA	A0A0P0IY73	Acinetobacter_phage	32.2	2.0e-58
WP_000930014.1|782411_782912_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	E7DN65	Pneumococcus_phage	71.5	5.9e-52
WP_001068501.1|782931_783798_-	DMT family transporter	NA	NA	NA	NA	NA
WP_000692521.1|784598_784997_+	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	A0A2H4J545	uncultured_Caudovirales_phage	72.0	1.2e-52
WP_000855514.1|784959_787065_+	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A0A2H4J2N6	uncultured_Caudovirales_phage	91.7	0.0e+00
WP_000562498.1|787182_788154_+	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	A0A2H4J4P3	uncultured_Caudovirales_phage	91.3	4.2e-171
WP_000499195.1|788334_788490_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000876318.1|788528_789500_+	ABC transporter permease	NA	A0A2H4IY97	uncultured_Caudovirales_phage	78.9	4.3e-139
WP_001245577.1|789486_790443_+	iron chelate uptake ABC transporter family permease subunit	NA	A0A2H4J116	uncultured_Caudovirales_phage	57.8	1.2e-05
WP_000616840.1|790439_791201_+	ABC transporter ATP-binding protein	NA	Q9EMR9	Amsacta_moorei_entomopoxvirus	31.6	6.5e-18
>prophage 3
NZ_CP029657	Staphylococcus aureus strain AR_0468 chromosome, complete genome	2911284	876680	933611	2911284	capsid,transposase,terminase,head,tail,integrase,portal,plate,holin	Staphylococcus_phage(75.0%)	84	874777:874793	909431:909447
874777:874793	attL	GAAATTAGATAAAAACA	NA	NA	NA	NA
WP_001006450.1|876680_877931_+	cysteine desulfurase	NA	Q2XUY6	environmental_halophage	44.8	1.1e-110
WP_001010508.1|877920_878385_+	SUF system NifU family Fe-S cluster assembly protein	NA	NA	NA	NA	NA
WP_001074405.1|878535_879933_+	Fe-S cluster assembly protein SufB	NA	NA	NA	NA	NA
WP_001145726.1|880000_881050_-|integrase	site-specific integrase	integrase	A1KWY3	Staphylococcus_virus	99.7	4.5e-203
WP_000337826.1|881162_881342_+	hypothetical protein	NA	A0EWN7	Staphylococcus_virus	100.0	8.3e-25
WP_000392186.1|881321_882254_-	hypothetical protein	NA	A0EWN8	Staphylococcus_virus	100.0	3.9e-174
WP_000661437.1|882285_883011_-	hypothetical protein	NA	A0A0F6N4L7	Staphylococcus_phage	100.0	9.9e-125
WP_000775187.1|883038_883713_-	ImmA/IrrE family metallo-endopeptidase	NA	A0A0F6N3H6	Staphylococcus_phage	100.0	4.9e-126
WP_001055143.1|883729_884062_-	helix-turn-helix transcriptional regulator	NA	R4IH08	Staphylococcus_phage	100.0	4.1e-57
WP_000108122.1|884324_884519_+	helix-turn-helix transcriptional regulator	NA	A0A0F6N3M9	Staphylococcus_phage	100.0	1.1e-25
WP_001002757.1|884518_885286_+	phage antirepressor Ant	NA	A0A0F6N3N8	Staphylococcus_phage	100.0	1.1e-142
WP_000187184.1|885286_885511_+	hypothetical protein	NA	A0A0F6N4M2	Staphylococcus_phage	100.0	3.2e-34
WP_001094943.1|885550_886000_+	hypothetical protein	NA	A1KWZ2	Staphylococcus_virus	100.0	3.0e-79
WP_000977381.1|886013_886235_+	hypothetical protein	NA	A0A0F6N3I2	Staphylococcus_phage	100.0	1.5e-31
WP_000066011.1|886227_886389_+	DUF1270 domain-containing protein	NA	Q4ZAZ7	Staphylococcus_virus	100.0	2.5e-20
WP_000165363.1|886482_886785_+	DUF2482 family protein	NA	A0A0F6N3N3	Staphylococcus_phage	100.0	1.4e-48
WP_000291090.1|886789_887050_+	DUF1108 family protein	NA	Q4ZDA1	Staphylococcus_virus	100.0	1.2e-43
WP_000815401.1|887059_887281_+	DUF2483 family protein	NA	A7TWM6	Staphylococcus_phage	100.0	3.2e-34
WP_000139720.1|887273_887897_+	DUF1071 domain-containing protein	NA	A0A2H4PQQ6	Staphylococcus_phage	100.0	1.4e-114
WP_000934385.1|887896_888325_+	single-stranded DNA-binding protein	NA	B2ZYV4	Staphylococcus_phage	100.0	3.9e-60
WP_001124438.1|888338_889013_+	hypothetical protein	NA	R4IH15	Staphylococcus_phage	96.9	1.4e-125
WP_000414755.1|889151_889433_-	hypothetical protein	NA	A0A1W6JPU7	Staphylococcus_phage	100.0	2.6e-49
WP_000190254.1|889498_890269_+	hypothetical protein	NA	G4KNP0	Staphylococcus_phage	100.0	6.4e-122
WP_000803062.1|890278_891058_+	ATP-binding protein	NA	G4KNP1	Staphylococcus_phage	100.0	3.8e-146
WP_000256589.1|891051_891210_+	hypothetical protein	NA	A0A2H4PQI7	Staphylococcus_phage	100.0	4.5e-22
WP_001123695.1|891222_891444_+	DUF3269 family protein	NA	A0A0H3U2V4	Staphylococcus_phage	100.0	2.2e-35
WP_000049794.1|891453_891858_+	DUF1064 domain-containing protein	NA	A1KX76	Staphylococcus_virus	100.0	9.6e-69
WP_001187243.1|891862_892048_+	DUF3113 family protein	NA	A0A0F6N3K7	Staphylococcus_phage	100.0	1.1e-27
WP_000101252.1|892048_892354_+	hypothetical protein	NA	A0A0F6N4H9	Staphylococcus_phage	100.0	1.7e-49
WP_000029376.1|892481_892838_+	hypothetical protein	NA	A0A0F6N3E3	Staphylococcus_phage	100.0	6.5e-61
WP_000131376.1|892841_893084_+	hypothetical protein	NA	A0A0F6N3E1	Staphylococcus_phage	98.8	1.9e-40
WP_001557190.1|893092_893464_+	hypothetical protein	NA	A0A0F6N3K4	Staphylococcus_phage	100.0	3.6e-54
WP_001065060.1|893456_893711_+	DUF1024 family protein	NA	A1KX15	Staphylococcus_virus	97.6	2.5e-38
WP_072471035.1|893673_893868_+	hypothetical protein	NA	A0A0E3T9L7	Staphylococcus_phage	87.5	8.5e-23
WP_000185647.1|893860_894394_+	dUTP pyrophosphatase	NA	A1KX16	Staphylococcus_virus	99.4	2.4e-96
WP_000617154.1|894430_894637_+	DUF1381 domain-containing protein	NA	A0A0H3U2R7	Staphylococcus_phage	72.1	1.0e-18
WP_000132921.1|894633_894828_+	hypothetical protein	NA	A0A2I6PEC2	Staphylococcus_phage	100.0	6.0e-29
WP_001072795.1|894824_895028_+	hypothetical protein	NA	A0A0N9BAX5	Staphylococcus_phage	100.0	5.2e-31
WP_000608278.1|895020_895257_+	hypothetical protein	NA	Q4ZDP0	Staphylococcus_virus	100.0	2.8e-36
WP_000595257.1|895249_895423_+	transcriptional activator RinB	NA	Q4ZBK0	Staphylococcus_phage	100.0	6.4e-22
WP_000990004.1|895423_895528_+	hypothetical protein	NA	B2ZYX7	Staphylococcus_phage	100.0	7.0e-08
WP_000162701.1|895593_896016_+	RinA family phage transcriptional activator	NA	A0A0F6N3E5	Staphylococcus_phage	100.0	1.2e-74
WP_001038244.1|896203_896698_+|terminase	terminase small subunit	terminase	A0A0F6N3K6	Staphylococcus_phage	100.0	7.8e-89
WP_000273011.1|896700_897996_+|terminase	PBSX family phage terminase large subunit	terminase	A0A0F6N3L3	Staphylococcus_phage	100.0	3.0e-257
WP_000909970.1|898006_899545_+|portal	phage portal protein	portal	A0A0F6N4I8	Staphylococcus_phage	100.0	2.4e-293
WP_001133044.1|899551_900547_+|capsid	minor capsid protein	capsid	A0A0F6N3F1	Staphylococcus_phage	100.0	2.0e-184
WP_000072208.1|900619_900790_+	hypothetical protein	NA	A0A0F6N3E9	Staphylococcus_phage	100.0	1.5e-23
WP_000392151.1|900898_901519_+	DUF4355 domain-containing protein	NA	S4V984	Staphylococcus_phage	98.5	1.7e-69
WP_000438511.1|901532_902507_+|capsid	phage major capsid protein	capsid	E0Y3L0	Staphylococcus_virus	100.0	2.2e-183
WP_001114086.1|902528_902816_+	hypothetical protein	NA	S4V6D9	Staphylococcus_phage	98.9	1.4e-45
WP_000208960.1|902824_903157_+|head,tail	phage head-tail connector protein	head,tail	A0A0F6N3F4	Staphylococcus_phage	100.0	5.5e-54
WP_001268312.1|903153_903456_+	hypothetical protein	NA	A4ZFB6	Staphylococcus_virus	100.0	1.1e-50
WP_001017815.1|903455_903803_+	HK97 gp10 family phage protein	NA	A0A0F6N3F5	Staphylococcus_phage	100.0	4.1e-60
WP_000188643.1|903814_904198_+	hypothetical protein	NA	E0Y3L5	Staphylococcus_virus	98.4	3.8e-67
WP_000002577.1|904216_904798_+|tail	phage major tail protein, TP901-1 family	tail	A0A0F6N3L8	Staphylococcus_phage	100.0	4.9e-106
WP_001100161.1|904859_905225_+	hypothetical protein	NA	A0A0F6N4J9	Staphylococcus_phage	100.0	3.6e-59
WP_000105584.1|905254_905599_+	hypothetical protein	NA	A0A0F6N3F7	Staphylococcus_phage	100.0	2.5e-57
WP_000141480.1|905615_909083_+	hypothetical protein	NA	A0A0F6N3F9	Staphylococcus_phage	100.0	4.2e-245
WP_000350675.1|909095_910043_+|tail	phage tail family protein	tail	A0A0F6N3L4	Staphylococcus_phage	100.0	2.8e-183
909431:909447	attR	GAAATTAGATAAAAACA	NA	NA	NA	NA
WP_000152714.1|910051_911953_+	peptidase	NA	I1W634	Staphylococcus_phage	99.8	0.0e+00
WP_000369017.1|911967_913878_+	hypothetical protein	NA	Q4ZDD6	Staphylococcus_virus	98.9	0.0e+00
WP_000259619.1|913877_915701_+|plate	BppU family phage baseplate upper protein	plate	A1KX42	Staphylococcus_virus	99.2	3.9e-295
WP_000705896.1|915700_916078_+	DUF2977 domain-containing protein	NA	A0A0F6N3G4	Staphylococcus_phage	100.0	1.5e-60
WP_000782200.1|916081_916255_+	XkdX family protein	NA	A0A0F6N3L7	Staphylococcus_phage	100.0	6.6e-27
WP_000466778.1|916294_916594_+	DUF2951 domain-containing protein	NA	A0A0H4ITZ0	Staphylococcus_phage	100.0	7.6e-47
WP_000524022.1|916730_918629_+	CHAP domain-containing protein	NA	A0EX80	Staphylococcus_virus	99.7	0.0e+00
WP_000276662.1|918641_919880_+|plate	BppU family phage baseplate upper protein	plate	A0A0F6N3G7	Staphylococcus_phage	100.0	1.6e-210
WP_000398868.1|919885_920281_+	hypothetical protein	NA	A1KXB6	Staphylococcus_virus	100.0	1.6e-68
WP_000351119.1|920336_920612_+|holin	phage holin	holin	A0A0F6N3M0	Staphylococcus_phage	100.0	8.6e-45
WP_001141517.1|920598_922011_+	CHAP domain-containing protein	NA	A0A0F6N3N1	Staphylococcus_phage	100.0	5.8e-286
WP_001035620.1|922070_922628_-	DUF4888 domain-containing protein	NA	A0A0F6N4L1	Staphylococcus_phage	100.0	7.4e-96
WP_001788502.1|923002_923155_+	hypothetical protein	NA	A0A0F6N3H2	Staphylococcus_phage	100.0	3.1e-20
WP_000139423.1|923225_923336_+	hypothetical protein	NA	W5R8J7	Staphylococcus_phage	100.0	1.7e-12
WP_000382163.1|923322_923523_+	hypothetical protein	NA	W5R9N2	Staphylococcus_phage	100.0	3.7e-29
WP_000274029.1|924352_924667_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000582326.1|925031_926072_+	HlyC/CorC family transporter	NA	NA	NA	NA	NA
WP_000267236.1|926085_927153_+	nitronate monooxygenase	NA	NA	NA	NA	NA
WP_016170465.1|927406_927490_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000608129.1|927537_928386_+	DUF72 domain-containing protein	NA	NA	NA	NA	NA
WP_000927632.1|928398_929226_+	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
WP_001241246.1|929252_930572_+	bifunctional metallophosphatase/5'-nucleotidase	NA	NA	NA	NA	NA
WP_000201875.1|930655_931573_+	lipoyl synthase	NA	NA	NA	NA	NA
WP_000598444.1|931702_932086_+	YutD family protein	NA	NA	NA	NA	NA
WP_001557163.1|932291_933611_+|transposase	ISL3-like element IS1181 family transposase	transposase	NA	NA	NA	NA
>prophage 4
NZ_CP029657	Staphylococcus aureus strain AR_0468 chromosome, complete genome	2911284	1080179	1088652	2911284		Synechococcus_phage(33.33%)	9	NA	NA
WP_000861573.1|1080179_1080662_+	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	44.7	8.0e-22
WP_001010413.1|1080648_1081773_+	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA	NA
WP_000174053.1|1081776_1082481_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	M4R1E8	Synechococcus_phage	42.1	7.3e-48
WP_000848350.1|1082480_1082744_+	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
WP_000666806.1|1082745_1083417_+	phosphoribosylformylglycinamidine synthase I	NA	NA	NA	NA	NA
WP_000032740.1|1083409_1085599_+	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	39.8	3.5e-141
WP_000483720.1|1085577_1087062_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	31.7	1.9e-45
WP_000030811.1|1087054_1088083_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	41.7	3.4e-62
WP_000238669.1|1088085_1088652_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	40.1	6.1e-29
>prophage 5
NZ_CP029657	Staphylococcus aureus strain AR_0468 chromosome, complete genome	2911284	1530103	1617627	2911284	capsid,protease,tRNA,terminase,head,tail,integrase,portal,plate,holin	Staphylococcus_phage(78.95%)	104	1569127:1569144	1616144:1616161
WP_000858779.1|1530103_1531396_-|tRNA	asparagine--tRNA ligase	tRNA	M1PB22	Moumouvirus	31.3	8.7e-55
WP_000525078.1|1531717_1534411_-	ATP-dependent helicase DinG	NA	A0A1X9I5C8	Streptococcus_phage	34.4	8.2e-47
WP_000049921.1|1534434_1535406_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_000361540.1|1535392_1536595_-|tRNA	CCA tRNA nucleotidyltransferase	tRNA	H7BUW3	unidentified_phage	43.3	4.2e-35
WP_000690025.1|1536599_1537742_-	N-acetyl-alpha-D-glucosaminyl L-malate synthase BshA	NA	NA	NA	NA	NA
WP_000839926.1|1537985_1538303_-	nucleotide pyrophosphohydrolase	NA	NA	NA	NA	NA
WP_001827022.1|1538638_1539319_-	zinc metallopeptidase	NA	NA	NA	NA	NA
WP_000154683.1|1539390_1539978_-	DUF1405 domain-containing protein	NA	NA	NA	NA	NA
WP_000005212.1|1539967_1540543_-	IDEAL domain-containing protein	NA	G3MAV7	Bacillus_virus	27.2	2.1e-08
WP_011443634.1|1540556_1541660_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000253231.1|1541807_1543106_-	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
WP_000776312.1|1543115_1544180_-	3-dehydroquinate synthase	NA	NA	NA	NA	NA
WP_001269921.1|1544205_1545372_-	chorismate synthase	NA	A0A291AU41	Pandoravirus	31.8	5.8e-34
WP_000789522.1|1545757_1545958_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000442480.1|1546166_1546616_-	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.8	2.4e-28
WP_001817755.1|1546707_1547652_-	heptaprenyl diphosphate synthase subunit II	NA	A0A1V0SE37	Indivirus	24.4	1.3e-10
WP_000774684.1|1547668_1548394_-	demethylmenaquinone methyltransferase	NA	NA	NA	NA	NA
WP_000450555.1|1548396_1548969_-	heptaprenyl diphosphate synthase component 1	NA	NA	NA	NA	NA
WP_001043863.1|1549399_1549672_-	HU family DNA-binding protein	NA	A7KV42	Bacillus_phage	73.3	4.2e-28
WP_000161745.1|1549842_1550841_-	NAD(P)H-dependent glycerol-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_000165530.1|1550857_1552168_-	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_000133961.1|1552389_1553565_-	30S ribosomal protein S1	NA	NA	NA	NA	NA
WP_001792202.1|1553821_1554013_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001795818.1|1554093_1554246_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000644391.1|1554276_1554936_-	(d)CMP kinase	NA	NA	NA	NA	NA
WP_000681757.1|1555012_1555981_+	asparaginase	NA	NA	NA	NA	NA
WP_001174258.1|1556095_1557082_-	YpdA family putative bacillithiol disulfide reductase	NA	NA	NA	NA	NA
WP_001792205.1|1557242_1557359_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000069291.1|1557483_1558944_-	elastin-binding protein EbpS	NA	NA	NA	NA	NA
WP_000902099.1|1559096_1560476_-	ATP-dependent DNA helicase RecQ	NA	A0A2P1EM61	Moumouvirus	33.6	1.4e-55
WP_001163801.1|1560465_1561419_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001151997.1|1561526_1561775_+	ferredoxin	NA	A0A127AYY7	Bacillus_phage	48.0	8.3e-15
WP_001186912.1|1561880_1562426_-	ECF transporter S component	NA	NA	NA	NA	NA
WP_000913227.1|1562827_1563784_-	DUF1672 domain-containing protein	NA	NA	NA	NA	NA
WP_001557351.1|1563924_1564179_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000476354.1|1564254_1565151_-	DUF1672 domain-containing protein	NA	NA	NA	NA	NA
WP_000476865.1|1565208_1566114_-	DUF1672 domain-containing protein	NA	NA	NA	NA	NA
WP_000126131.1|1566203_1566419_-	hypothetical protein	NA	A0ZS61	Staphylococcus_virus	100.0	2.0e-25
WP_000909213.1|1567140_1568595_-	CHAP domain-containing protein	NA	U5U7D2	Staphylococcus_phage	100.0	2.6e-289
WP_000339146.1|1568605_1568908_-|holin	phage holin	holin	A0A2I6PET6	Staphylococcus_phage	100.0	7.0e-48
WP_000466784.1|1569043_1569343_-	DUF2951 domain-containing protein	NA	A0A2I6PER2	Staphylococcus_phage	100.0	2.0e-31
1569127:1569144	attL	TGTCTCTAATATTTTTAG	NA	NA	NA	NA
WP_000916020.1|1569388_1569553_-	XkdX family protein	NA	A0A2I6PES4	Staphylococcus_phage	100.0	4.9e-24
WP_001166599.1|1569545_1569935_-	DUF2977 domain-containing protein	NA	A0A2I6PER1	Staphylococcus_phage	100.0	2.2e-62
WP_031837459.1|1569934_1571401_-|plate	BppU family phage baseplate upper protein	plate	A0A2I6PES7	Staphylococcus_phage	95.3	2.5e-260
WP_000429551.1|1571400_1573311_-	minor structural protein	NA	A0A2I6PF35	Staphylococcus_phage	100.0	0.0e+00
WP_000179858.1|1573326_1573617_-	hypothetical protein	NA	U5U457	Staphylococcus_phage	100.0	2.1e-49
WP_000384474.1|1573616_1575200_-	peptidase	NA	A0A2I6PEQ5	Staphylococcus_phage	100.0	9.3e-309
WP_001190533.1|1575208_1576033_-|tail	phage tail family protein	tail	A0A2I6PER3	Staphylococcus_phage	100.0	4.1e-159
WP_108720653.1|1576032_1582233_-|tail	phage tail tape measure protein	tail	M9QQM6	Staphylococcus_phage	99.5	0.0e+00
WP_108720645.1|1582246_1582405_-	hypothetical protein	NA	A0A2I6PES8	Staphylococcus_phage	92.3	1.3e-18
WP_000589167.1|1582446_1582797_-	hypothetical protein	NA	A0A2I6PEQ2	Staphylococcus_phage	100.0	1.1e-55
WP_000169127.1|1582854_1583310_-	Ig domain-containing protein	NA	A0A2I6PER6	Staphylococcus_phage	100.0	5.7e-78
WP_000807541.1|1583401_1584043_-|tail	tail protein	tail	A0A2I6PEP6	Staphylococcus_phage	99.1	5.0e-120
WP_001023802.1|1584077_1584473_-	DUF3168 domain-containing protein	NA	A0A2I6PDD8	Staphylococcus_phage	100.0	2.6e-66
WP_000110020.1|1584473_1584875_-	hypothetical protein	NA	A0A2I6PDD3	Staphylococcus_phage	100.0	6.2e-68
WP_000395495.1|1584871_1585204_-	hypothetical protein	NA	A0A2I6PDD6	Staphylococcus_phage	99.1	8.2e-58
WP_000050973.1|1585215_1585494_-|head,tail	phage gp6-like head-tail connector protein	head,tail	A0A2I6PEQ1	Staphylococcus_phage	100.0	2.1e-46
WP_001142738.1|1585562_1586726_-|capsid	phage major capsid protein	capsid	M9QQM0	Staphylococcus_phage	100.0	4.2e-218
WP_110409207.1|1586757_1587510_-|protease	Clp protease ClpP	protease	M1TAZ4	Staphylococcus_phage	98.4	7.6e-128
WP_001100671.1|1587493_1588732_-|portal	phage portal protein	portal	A0A2K9VBP0	Staphylococcus_phage	99.8	2.6e-234
WP_000778932.1|1590416_1590722_-|terminase	terminase	terminase	A0A2I6PE27	Staphylococcus_phage	100.0	2.9e-49
WP_000160689.1|1590850_1591165_-	HNH endonuclease	NA	A0A2I6PDC4	Staphylococcus_phage	100.0	2.5e-56
WP_000513699.1|1591321_1591759_-	transcriptional regulator	NA	A0A2I6PDC2	Staphylococcus_phage	100.0	4.6e-77
WP_001793488.1|1591771_1593139_-	DEAD/DEAH box helicase	NA	A0A2I6PE95	Staphylococcus_phage	100.0	1.7e-263
WP_000665205.1|1593119_1593410_-	VRR-NUC domain-containing protein	NA	U5U7A3	Staphylococcus_phage	100.0	4.9e-51
WP_001801650.1|1593543_1593642_+	hypothetical protein	NA	A0A2I6PDP6	Staphylococcus_phage	100.0	3.7e-11
WP_000884870.1|1593750_1596198_-	hypothetical protein	NA	A0A2I6PEP4	Staphylococcus_phage	100.0	0.0e+00
WP_000265252.1|1596485_1596686_-	DUF1514 family protein	NA	A0A2I6PEP5	Staphylococcus_phage	100.0	4.9e-26
WP_000595263.1|1596753_1596906_-	transcriptional activator RinB	NA	A0A2I6PEM5	Staphylococcus_phage	100.0	2.0e-19
WP_001799187.1|1596902_1597298_-	hypothetical protein	NA	A7TWI1	Staphylococcus_phage	100.0	3.3e-66
WP_000608283.1|1597281_1597518_-	hypothetical protein	NA	A7TWI0	Staphylococcus_phage	100.0	3.6e-36
WP_000141259.1|1597510_1597714_-	hypothetical protein	NA	A7TWH9	Staphylococcus_phage	100.0	8.8e-31
WP_000195810.1|1597710_1597917_-	DUF1381 domain-containing protein	NA	S4V684	Staphylococcus_phage	100.0	7.6e-30
WP_001624699.1|1597953_1598490_-	hypothetical protein	NA	A1KX85	Staphylococcus_virus	98.3	3.3e-93
WP_078065696.1|1598482_1598677_-	hypothetical protein	NA	A1KX84	Staphylococcus_virus	96.9	4.8e-26
WP_001624702.1|1598639_1598894_-	DUF1024 family protein	NA	A0A0E3XC66	Staphylococcus_phage	98.8	7.2e-38
WP_001624703.1|1598886_1599252_-	hypothetical protein	NA	A1KX82	Staphylococcus_virus	100.0	4.2e-63
WP_000982708.1|1599248_1599698_-	hypothetical protein	NA	A0A2I6PDH2	Staphylococcus_phage	100.0	9.3e-81
WP_072533861.1|1599762_1600011_-	hypothetical protein	NA	A0A2I6PF06	Staphylococcus_phage	98.8	8.0e-42
WP_001624706.1|1600010_1600265_-	DUF3310 domain-containing protein	NA	A0A059T7J9	Staphylococcus_phage	97.6	1.4e-41
WP_001624708.1|1600264_1600666_-	PVL family protein	NA	A0A2I6PEL5	Staphylococcus_phage	99.2	3.6e-68
WP_001164629.1|1600665_1600851_-	DUF3113 family protein	NA	A0A2I6PEM8	Staphylococcus_phage	100.0	7.0e-27
WP_001802096.1|1600863_1602816_-	DNA polymerase	NA	A0A2I6PE86	Staphylococcus_phage	100.0	0.0e+00
WP_000645048.1|1602883_1603441_-	DUF2815 family protein	NA	A0A2I6PEP8	Staphylococcus_phage	100.0	1.8e-97
WP_000762530.1|1603466_1604633_-	DUF2800 domain-containing protein	NA	B5WZM3	Staphylococcus_phage	100.0	8.3e-222
WP_000985971.1|1604629_1604992_-	hypothetical protein	NA	A0A2I6PEM7	Staphylococcus_phage	99.2	1.9e-55
WP_000174998.1|1605006_1605330_-	hypothetical protein	NA	A0A2I6PE70	Staphylococcus_phage	100.0	6.5e-52
WP_001285954.1|1605408_1605570_-	DUF1270 domain-containing protein	NA	A7TWM3	Staphylococcus_phage	100.0	8.6e-21
WP_001124157.1|1605582_1605846_-	helix-turn-helix domain-containing protein	NA	A7TWG0	Staphylococcus_phage	98.9	6.3e-45
WP_001097552.1|1605870_1606086_-	hypothetical protein	NA	A0A2I6PF01	Staphylococcus_phage	100.0	1.9e-31
WP_001128433.1|1606140_1606506_+	hypothetical protein	NA	A0A2I6PF07	Staphylococcus_phage	100.0	2.4e-63
WP_001025401.1|1606474_1606720_-	DUF2829 domain-containing protein	NA	A0A2I6PF15	Staphylococcus_phage	100.0	5.1e-41
WP_001001383.1|1606769_1606988_-	hypothetical protein	NA	B5WZL5	Staphylococcus_phage	100.0	7.8e-33
WP_001030311.1|1607584_1607812_-	hypothetical protein	NA	B5WZL3	Staphylococcus_phage	100.0	3.3e-34
WP_000801423.1|1607983_1608598_+	helix-turn-helix domain-containing protein	NA	B5WZL2	Staphylococcus_phage	100.0	9.0e-111
WP_000348133.1|1608613_1609534_+	exonuclease	NA	B5WZL1	Staphylococcus_phage	100.0	2.5e-173
WP_000705240.1|1609629_1609812_+	hypothetical protein	NA	A0A2I6PDR4	Staphylococcus_phage	100.0	5.3e-27
WP_001795334.1|1609848_1609995_+	hypothetical protein	NA	A0A2I6PEK8	Staphylococcus_phage	100.0	1.2e-16
WP_000191464.1|1609991_1610606_-	hypothetical protein	NA	M9QRQ8	Staphylococcus_phage	99.5	2.5e-105
WP_000264751.1|1610731_1611937_+|integrase	site-specific integrase	integrase	A0A2I6PEN0	Staphylococcus_phage	100.0	7.7e-223
WP_001558502.1|1611979_1614007_-	hypothetical protein	NA	B5WZK7	Staphylococcus_phage	100.0	1.6e-116
WP_001557355.1|1613999_1614926_-	DUF1672 domain-containing protein	NA	NA	NA	NA	NA
WP_000987774.1|1615169_1616921_-	HAMP domain-containing protein	NA	A0A1V0SGX0	Hokovirus	33.2	2.2e-21
1616144:1616161	attR	TGTCTCTAATATTTTTAG	NA	NA	NA	NA
WP_000064078.1|1616901_1617627_-	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	43.0	3.5e-45
>prophage 6
NZ_CP029657	Staphylococcus aureus strain AR_0468 chromosome, complete genome	2911284	1752528	1761571	2911284	tRNA	uncultured_Mediterranean_phage(50.0%)	7	NA	NA
WP_000364542.1|1752528_1753047_-	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	46.5	5.6e-29
WP_000595011.1|1753068_1755342_-	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	29.3	8.1e-64
WP_000749795.1|1755544_1757824_-	protein translocase subunit SecDF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.8	1.8e-31
WP_001160682.1|1758098_1758359_-	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	35.3	8.2e-05
WP_001112045.1|1758377_1759517_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.7	5.4e-85
WP_001019178.1|1759539_1760565_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_001005768.1|1760566_1761571_-	Holliday junction branch migration DNA helicase RuvB	NA	B3GAM6	uncultured_virus	29.1	1.7e-05
>prophage 7
NZ_CP029657	Staphylococcus aureus strain AR_0468 chromosome, complete genome	2911284	1898907	1955408	2911284	transposase,protease,tRNA	Staphylococcus_phage(95.45%)	58	NA	NA
WP_001108730.1|1898907_1901322_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	99.5	0.0e+00
WP_001025067.1|1901612_1902794_-	MFS transporter	NA	A0A2H4PQR6	Staphylococcus_phage	99.7	7.3e-218
WP_000526539.1|1902903_1903857_+	TIGR01212 family radical SAM protein	NA	A0A2H4PQV5	Staphylococcus_phage	100.0	2.2e-79
WP_000764419.1|1903853_1904417_+	methyltransferase domain-containing protein	NA	A0A2H4PQV0	Staphylococcus_phage	99.5	8.3e-103
WP_000757543.1|1904539_1904941_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_001557163.1|1905580_1906900_-|transposase	ISL3-like element IS1181 family transposase	transposase	NA	NA	NA	NA
WP_000266096.1|1907032_1907860_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_001790712.1|1907862_1907982_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001196362.1|1908092_1909094_+	proline dehydrogenase	NA	A0A2H4PQT6	Staphylococcus_phage	99.4	2.6e-184
WP_001008549.1|1909215_1909680_-	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	100.0	4.5e-70
WP_001159037.1|1909692_1910874_-	3,4-dihydroxy-2-butanone-4-phosphate synthase	NA	A0A2H4PQS2	Staphylococcus_phage	99.5	5.6e-226
WP_000493887.1|1910884_1911517_-	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	98.6	5.5e-111
WP_000384185.1|1911523_1912555_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	98.8	4.0e-196
WP_001261668.1|1913047_1914550_-	FAD-dependent oxidoreductase	NA	A0A2H4PQX2	Staphylococcus_phage	98.6	1.9e-29
WP_000221177.1|1915072_1915387_+	winged helix-turn-helix transcriptional regulator	NA	A0A2H4PQT4	Staphylococcus_phage	98.1	9.8e-53
WP_000989121.1|1915386_1916679_+	arsenite efflux transporter membrane subunit ArsB	NA	A0A2H4PQU3	Staphylococcus_phage	99.5	5.0e-228
WP_001032833.1|1916765_1917620_-	autolysin	NA	Q4ZCC7	Staphylococcus_virus	38.6	9.8e-39
WP_000384171.1|1917895_1918120_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000671057.1|1918318_1918789_+	RNA polymerase sigma factor	NA	A0A2H4PQT5	Staphylococcus_phage	98.1	8.8e-82
WP_001153742.1|1918901_1919345_+	competence protein ComK	NA	NA	NA	NA	NA
WP_001030469.1|1919331_1919775_-	hypothetical protein	NA	A0A2H4PQT8	Staphylococcus_phage	98.6	2.4e-57
WP_001168903.1|1920070_1920706_+|protease	CPBP family intramembrane metalloprotease SdpA	protease	NA	NA	NA	NA
WP_001096494.1|1921145_1921859_-	transaldolase	NA	M1PR54	Cyanophage	35.3	5.5e-19
WP_000091442.1|1922118_1922421_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001200542.1|1922667_1923033_+	fluoride efflux transporter CrcB	NA	A0A2H4PQR0	Staphylococcus_phage	100.0	3.6e-59
WP_000623470.1|1923029_1923383_+	CrcB family protein	NA	A0A2H4PQQ7	Staphylococcus_phage	94.0	3.8e-21
WP_000453306.1|1925379_1926213_-	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	99.3	7.8e-158
WP_000366163.1|1926424_1927333_-	NERD domain-containing protein	NA	A0A2H4PQQ8	Staphylococcus_phage	100.0	3.4e-138
WP_000933820.1|1927454_1928651_-	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	99.5	4.3e-218
WP_000109906.1|1929022_1930615_+	phosphoenolpyruvate carboxykinase (ATP)	NA	A0A2H4PQN1	Staphylococcus_phage	100.0	0.0e+00
WP_001822900.1|1930992_1931739_-	S9 family peptidase	NA	A0A2H4PQM6	Staphylococcus_phage	98.8	1.4e-142
WP_000672013.1|1931743_1932217_-	nucleoside triphosphatase YtkD	NA	A0A2H4PQM4	Staphylococcus_phage	98.7	7.2e-84
WP_000718107.1|1932282_1932540_+	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	100.0	7.2e-46
WP_000778528.1|1932536_1933538_-	o-succinylbenzoate synthase	NA	A0A2H4PQM0	Staphylococcus_phage	97.3	5.3e-185
WP_000348364.1|1933542_1935021_-	o-succinylbenzoate--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	97.6	2.8e-283
WP_012840523.1|1935179_1935635_-	DUF4909 domain-containing protein	NA	A0A2H4PQN7	Staphylococcus_phage	99.3	3.6e-80
WP_001795210.1|1935937_1936588_+	calcium-binding protein	NA	A0A2H4PQM8	Staphylococcus_phage	94.0	2.9e-51
WP_000070642.1|1936668_1937664_+	DUF4352 domain-containing protein	NA	A0A2H4PQN2	Staphylococcus_phage	97.9	2.6e-67
WP_000669024.1|1937738_1938365_+	hypothetical protein	NA	A0A2H4PQM7	Staphylococcus_phage	79.8	3.1e-74
WP_000627540.1|1938405_1938747_+	DUF3969 family protein	NA	A0A2H4PQN6	Staphylococcus_phage	94.7	1.1e-54
WP_000414216.1|1938847_1939420_+	hypothetical protein	NA	A0A2H4PQN4	Staphylococcus_phage	93.1	2.3e-23
WP_001801861.1|1940774_1940870_+	type I toxin-antitoxin system Fst family toxin PepA1	NA	NA	NA	NA	NA
WP_001792025.1|1940992_1941094_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000072627.1|1942169_1943399_-	restriction endonuclease subunit S	NA	A0A2H4PQP5	Staphylococcus_phage	64.7	4.0e-134
WP_001793440.1|1943391_1945131_-	type I restriction-modification system subunit M	NA	A0A2H4PQP4	Staphylococcus_phage	100.0	2.4e-289
WP_001791797.1|1945111_1945246_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001038752.1|1945308_1946028_-|protease	serine protease SplF	protease	A0A2H4PQP1	Staphylococcus_phage	99.6	1.9e-131
WP_011447030.1|1946129_1946237_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001038704.1|1946185_1946905_-|protease	serine protease SplD	protease	A0A2H4PQP9	Staphylococcus_phage	99.6	4.6e-130
WP_001038872.1|1947025_1947745_-|protease	serine protease SplC	protease	A0A2H4PQP7	Staphylococcus_phage	98.7	1.3e-129
WP_001039454.1|1947802_1948525_-|protease	serine protease SplB	protease	A0A2H4PQN0	Staphylococcus_phage	98.3	3.5e-130
WP_001039427.1|1948649_1949357_-|protease	serine protease SplA	protease	A0A2H4PQN3	Staphylococcus_phage	97.0	7.9e-127
WP_001092780.1|1950320_1950902_+	DUF4888 domain-containing protein	NA	A0A2H4PQH6	Staphylococcus_phage	64.8	9.6e-54
WP_000469591.1|1951374_1951593_-	hypothetical protein	NA	A0A2H4PQH0	Staphylococcus_phage	80.6	2.0e-25
WP_000550252.1|1951848_1952322_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000543854.1|1952326_1953118_+	DUF1828 domain-containing protein	NA	NA	NA	NA	NA
WP_000782463.1|1953487_1954471_-	bi-component leukocidin LukED subunit D	NA	A0A2H4PQH7	Staphylococcus_phage	99.4	1.8e-185
WP_000473596.1|1954472_1955408_-	beta-channel forming cytolysin	NA	A0A2H4PQI5	Staphylococcus_phage	100.0	1.4e-174
>prophage 8
NZ_CP029657	Staphylococcus aureus strain AR_0468 chromosome, complete genome	2911284	2049155	2142105	2911284	capsid,protease,tRNA,terminase,head,tail,integrase,portal,holin	Staphylococcus_phage(84.62%)	113	2045592:2045616	2144391:2144415
2045592:2045616	attL	ACCCCAACTTGCATTGTCTGTAGAA	NA	NA	NA	NA
WP_108720647.1|2049155_2049458_-|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC	tRNA	NA	NA	NA	NA
WP_000957020.1|2049824_2051363_+	sodium/proline symporter PutP	NA	NA	NA	NA	NA
WP_000831700.1|2051451_2052651_-	CamS family sex pheromone protein	NA	NA	NA	NA	NA
WP_000774556.1|2052663_2054667_-	NAD-dependent DNA ligase LigA	NA	A0A0K2QQN8	Ralstonia_phage	36.2	1.2e-114
WP_000992924.1|2054670_2056863_-	DNA helicase PcrA	NA	A7KV33	Bacillus_phage	42.2	1.0e-135
WP_000272056.1|2056859_2057552_-	heptaprenylglyceryl phosphate synthase	NA	NA	NA	NA	NA
WP_001165363.1|2057723_2058026_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000572878.1|2058134_2059430_-	adenylosuccinate lyase	NA	A0A1B3B081	Gordonia_phage	32.9	1.6e-16
WP_108720646.1|2060289_2061456_+|protease	cysteine protease staphopain A	protease	NA	NA	NA	NA
WP_000434933.1|2061486_2061813_+	staphostatin A	NA	NA	NA	NA	NA
WP_000669862.1|2062104_2062278_-	NETI motif-containing protein	NA	NA	NA	NA	NA
WP_000011542.1|2062258_2062861_-	DUF2179 domain-containing protein	NA	NA	NA	NA	NA
WP_000040866.1|2063131_2063953_-	ammonia-dependent NAD(+) synthetase	NA	G3MA24	Bacillus_virus	52.7	2.3e-69
WP_000284436.1|2063945_2065415_-	nicotinate phosphoribosyltransferase	NA	G3MA18	Bacillus_virus	45.1	5.9e-108
WP_000897635.1|2065598_2066675_+	nitric oxide synthase oxygenase	NA	NA	NA	NA	NA
WP_001177828.1|2066694_2067489_+	prephenate dehydratase	NA	NA	NA	NA	NA
WP_001802312.1|2067560_2067668_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000323161.1|2067678_2069241_-	SLC13 family permease	NA	NA	NA	NA	NA
WP_000275727.1|2069445_2070543_-	pectate lyase	NA	U5PWM6	Bacillus_phage	34.6	3.3e-47
WP_000149686.1|2070911_2071472_+	cysteine hydrolase	NA	G3MA16	Bacillus_virus	41.2	2.0e-32
WP_001140871.1|2071524_2072454_+	manganese-dependent inorganic pyrophosphatase	NA	NA	NA	NA	NA
WP_001792184.1|2072646_2072820_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001021211.1|2072871_2074251_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_000181315.1|2074370_2075399_-	lactonase family protein	NA	NA	NA	NA	NA
WP_000205106.1|2075668_2076070_+	YolD-like family protein	NA	U3PG23	Staphylococcus_phage	42.9	6.0e-23
WP_000267034.1|2076642_2076816_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001188043.1|2077266_2078307_+	linear amide C-N hydrolase	NA	NA	NA	NA	NA
WP_000713072.1|2078363_2079206_-	DUF4097 family beta strand repeat protein	NA	NA	NA	NA	NA
WP_001033971.1|2079202_2079760_-	DUF1700 domain-containing protein	NA	NA	NA	NA	NA
WP_000966288.1|2079819_2080344_-	membrane protein	NA	NA	NA	NA	NA
WP_000182842.1|2080464_2081028_+	thioredoxin family protein	NA	NA	NA	NA	NA
WP_001221651.1|2081093_2081834_-	phenol-soluble modulin export ABC transporter permease subunit PmtD	NA	NA	NA	NA	NA
WP_000763043.1|2081833_2082706_-	phenol-soluble modulin export ABC transporter ATP-binding protein PmtC	NA	A0A2H4PQG7	Staphylococcus_phage	36.0	1.0e-27
WP_000645727.1|2082702_2083383_-	phenol-soluble modulin export ABC transporter permease subunit PmtB	NA	NA	NA	NA	NA
WP_000991306.1|2083383_2084280_-	phenol-soluble modulin export ABC transporter ATP-binding protein PmtA	NA	A0A2H4PQG7	Staphylococcus_phage	30.2	5.0e-17
WP_000691584.1|2084276_2084657_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000681968.1|2084914_2085091_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000990056.1|2085333_2085432_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001068542.1|2085631_2086918_+	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_000671712.1|2087196_2087487_-	MAP domain-containing protein	NA	NA	NA	NA	NA
WP_001557458.1|2087501_2088932_-	MAP domain-containing protein	NA	NA	NA	NA	NA
WP_000669789.1|2089889_2090069_+	hypothetical protein	NA	A0A1W6JQ29	Staphylococcus_phage	100.0	2.2e-25
WP_001791826.1|2090379_2090640_+	hypothetical protein	NA	M9NS66	Staphylococcus_phage	100.0	2.3e-23
WP_000702263.1|2090692_2091043_-	complement inhibitor SCIN-A	NA	A0A1P8L6B0	Staphylococcus_phage	100.0	7.5e-54
WP_000727649.1|2091727_2092177_+	chemotaxis-inhibiting protein CHIPS	NA	A0A1P8L6A8	Staphylococcus_phage	100.0	1.1e-78
WP_094969667.1|2092271_2092730_-	amidase	NA	R9QTN8	Staphylococcus_phage	98.0	4.1e-84
WP_000919350.1|2093256_2093748_-	staphylokinase	NA	A0A1X9H028	Staphylococcus_phage	100.0	9.5e-87
WP_000861038.1|2093938_2094694_-	CHAP domain-containing protein	NA	D2JLG5	Staphylococcus_phage	100.0	3.4e-152
WP_000611512.1|2094705_2094960_-|holin	phage holin	holin	D2JLG4	Staphylococcus_phage	100.0	4.1e-41
WP_001791821.1|2095011_2095119_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011447039.1|2095171_2095348_-|holin	putative holin-like toxin	holin	D2JLG3	Staphylococcus_phage	98.3	2.2e-22
WP_000539688.1|2095497_2095794_-	DUF2951 domain-containing protein	NA	D2JLG2	Staphylococcus_phage	100.0	2.9e-46
WP_001040261.1|2095851_2096139_-	hypothetical protein	NA	D2JLG1	Staphylococcus_phage	100.0	1.3e-43
WP_031864465.1|2096185_2096338_-	hypothetical protein	NA	D2JLG0	Staphylococcus_phage	98.0	2.0e-19
WP_000582154.1|2096327_2100113_-	hypothetical protein	NA	Q6R866	Staphylococcus_virus	98.3	0.0e+00
WP_000567396.1|2100128_2101613_-|tail	phage tail protein	tail	A0A2I6PDJ0	Staphylococcus_phage	99.8	4.5e-297
WP_001557459.1|2101609_2106142_-|tail	phage tail tape measure protein	tail	A0EX03	Staphylococcus_phage	98.9	0.0e+00
WP_001096355.1|2106386_2106737_-	hypothetical protein	NA	G4KNQ8	Staphylococcus_phage	100.0	7.8e-59
WP_071621395.1|2106786_2107011_-	hypothetical protein	NA	A0A075LYE8	Staphylococcus_phage	100.0	3.0e-32
WP_000985142.1|2107052_2107697_-|tail	phage tail protein	tail	G4KNQ7	Staphylococcus_phage	99.1	1.9e-119
WP_000565498.1|2107697_2108105_-	hypothetical protein	NA	G4KNQ6	Staphylococcus_phage	100.0	7.1e-72
WP_000114341.1|2108101_2108506_-	hypothetical protein	NA	A0A1W6JPJ1	Staphylococcus_phage	100.0	2.5e-69
WP_000755150.1|2108502_2108865_-|head,tail	head-tail adaptor protein	head,tail	G4KNQ4	Staphylococcus_phage	100.0	4.4e-65
WP_000150936.1|2108848_2109133_-|head,tail	phage head-tail adapter protein	head,tail	A0A2I6PDJ5	Staphylococcus_phage	100.0	2.3e-45
WP_000238241.1|2109122_2109407_-	hypothetical protein	NA	A0A2I6PDJ3	Staphylococcus_phage	97.9	5.2e-45
WP_000154568.1|2109426_2110572_-|capsid	phage major capsid protein	capsid	A0A1W6JPL4	Staphylococcus_phage	99.7	7.3e-215
WP_000861911.1|2110594_2111332_-|protease	Clp protease ClpP	protease	A0A1W6JPK0	Staphylococcus_phage	100.0	1.8e-129
WP_000025268.1|2111315_2112479_-|portal	phage portal protein	portal	A0A1W6JPQ9	Staphylococcus_phage	100.0	1.8e-216
WP_000625096.1|2112494_2114156_-|terminase	terminase large subunit	terminase	A0A075M4D3	Staphylococcus_phage	100.0	0.0e+00
WP_000402904.1|2114152_2114497_-	hypothetical protein	NA	G4KNP9	Staphylococcus_phage	100.0	9.4e-57
WP_000988332.1|2114627_2114927_-	HNH endonuclease	NA	A0A2I6PDH9	Staphylococcus_phage	100.0	3.5e-52
WP_000590122.1|2115158_2115575_-	hypothetical protein	NA	G4KNP7	Staphylococcus_phage	100.0	1.3e-76
WP_001557462.1|2115602_2115803_-	DUF1514 family protein	NA	D2JLD9	Staphylococcus_phage	98.5	5.3e-28
WP_000595265.1|2115802_2115952_-	transcriptional activator RinB	NA	A0A1W6JPZ2	Staphylococcus_phage	100.0	4.8e-18
WP_000195784.1|2115948_2116155_-	DUF1381 domain-containing protein	NA	A0A2I6PEA2	Staphylococcus_phage	94.1	1.1e-17
WP_001282077.1|2116151_2116397_-	hypothetical protein	NA	A0A2I6PDW7	Staphylococcus_phage	98.8	2.5e-35
WP_000185693.1|2116433_2116970_-	hypothetical protein	NA	Q9MBR0	Staphylococcus_prophage	100.0	1.6e-95
WP_001065108.1|2116966_2117212_-	DUF1024 family protein	NA	Q8SDV5	Staphylococcus_phage	95.1	1.7e-36
WP_000178987.1|2117226_2117475_-	hypothetical protein	NA	A0A0K1LL46	Staphylococcus_phage	96.3	7.5e-40
WP_000111491.1|2117471_2117729_-	DUF3310 domain-containing protein	NA	A0A1X9H067	Staphylococcus_phage	98.8	6.3e-42
WP_031864466.1|2117728_2118100_-	phage protein	NA	A0A2I6PDG3	Staphylococcus_phage	91.1	2.4e-50
WP_000401969.1|2118112_2118517_-	RusA family crossover junction endodeoxyribonuclease	NA	A0A075M042	Staphylococcus_phage	100.0	8.4e-73
WP_000338528.1|2118525_2118744_-	hypothetical protein	NA	A0A1P8L6E4	Staphylococcus_phage	100.0	1.4e-37
WP_000148333.1|2118750_2119644_-	DnaD domain-containing protein	NA	A0A1P8L6F0	Staphylococcus_phage	100.0	3.2e-141
WP_000934759.1|2119673_2120144_-	single-stranded DNA-binding protein	NA	A0A1P8L6D9	Staphylococcus_phage	100.0	5.7e-81
WP_064135358.1|2120144_2120762_-	MBL fold metallo-hydrolase	NA	A0A1P8L6F7	Staphylococcus_phage	100.0	1.2e-86
WP_000180600.1|2120842_2121763_-	recombinase RecT	NA	A0A1P8L6F6	Staphylococcus_phage	100.0	5.1e-166
WP_000700554.1|2121764_2123708_-	AAA family ATPase	NA	A0A1P8L6F1	Staphylococcus_phage	100.0	0.0e+00
WP_001205732.1|2123716_2123980_-	hypothetical protein	NA	A0A2I6PDG2	Staphylococcus_phage	100.0	7.7e-43
WP_000291510.1|2123988_2124249_-	DUF1108 family protein	NA	A0A1P8L6F5	Staphylococcus_phage	100.0	5.2e-44
WP_000165371.1|2124253_2124556_-	DUF2482 family protein	NA	A0A1P8L6F8	Staphylococcus_phage	100.0	7.0e-48
WP_000048129.1|2124650_2124812_-	DUF1270 family protein	NA	A0A1P8L6G0	Staphylococcus_phage	100.0	1.9e-20
WP_001120201.1|2124808_2125132_-	DUF771 domain-containing protein	NA	A0A075LYF5	Staphylococcus_phage	100.0	3.0e-57
WP_000762521.1|2125186_2125567_+	DUF2513 domain-containing protein	NA	Q9T1Z5	Staphylococcus_phage	100.0	1.2e-68
WP_001148862.1|2125553_2125751_-	hypothetical protein	NA	O80075	Staphylococcus_phage	87.7	3.5e-24
WP_001148338.1|2125766_2126516_-	antirepressor	NA	B7T097	Staphylococcus_virus	99.6	3.4e-136
WP_000772137.1|2126572_2126782_+	hypothetical protein	NA	A0A2I6PDR8	Staphylococcus_phage	100.0	9.1e-31
WP_000939495.1|2126774_2126915_-	hypothetical protein	NA	A0A2I6PDT8	Staphylococcus_phage	100.0	1.9e-16
WP_000435360.1|2126929_2127373_-	hypothetical protein	NA	W5R971	Staphylococcus_phage	100.0	1.5e-75
WP_000639923.1|2127385_2127628_-	DUF739 family protein	NA	A0A1X9H035	Staphylococcus_phage	100.0	1.6e-39
WP_001083975.1|2127791_2128508_+	helix-turn-helix domain-containing protein	NA	A0A1X9H038	Staphylococcus_phage	100.0	5.4e-131
WP_001557601.1|2128519_2129374_+	restriction endonuclease	NA	A0A1X9H037	Staphylococcus_phage	100.0	7.3e-151
WP_000109189.1|2129590_2129776_+	hypothetical protein	NA	U5U7D6	Staphylococcus_phage	100.0	2.3e-25
WP_000705245.1|2129846_2130029_+	hypothetical protein	NA	A0A0H3U4Z4	Staphylococcus_phage	96.7	6.9e-27
WP_001549185.1|2130107_2130821_+	toxin MazF	NA	A0A1X9H026	Staphylococcus_phage	100.0	5.0e-129
WP_000857200.1|2131011_2132049_+|integrase	site-specific integrase	integrase	Q38086	Staphylococcus_phage	99.7	2.2e-178
WP_000595392.1|2133167_2134184_-	bi-component leukocidin LukGH subunit G	NA	A0A1X9IGW5	Staphylococcus_phage	30.2	6.7e-26
WP_000791411.1|2134205_2135261_-	bi-component leukocidin LukGH subunit H	NA	A0A1X9IGW5	Staphylococcus_phage	34.3	2.8e-35
WP_000206625.1|2135696_2136920_+	ArgE/DapE family deacylase	NA	NA	NA	NA	NA
WP_001045079.1|2137363_2138671_+	TrkH family potassium uptake protein	NA	NA	NA	NA	NA
WP_000240642.1|2139210_2140827_-	chaperonin GroEL	NA	A0A240F779	uncultured_virus	54.7	3.4e-157
WP_000917289.1|2140902_2141187_-	co-chaperone GroES	NA	A0A221S386	uncultured_virus	46.2	4.7e-14
WP_000197635.1|2141361_2142105_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
2144391:2144415	attR	ACCCCAACTTGCATTGTCTGTAGAA	NA	NA	NA	NA
>prophage 9
NZ_CP029657	Staphylococcus aureus strain AR_0468 chromosome, complete genome	2911284	2324573	2368272	2911284	capsid,protease,terminase,head,tail,integrase,portal,plate,holin	Staphylococcus_phage(95.16%)	62	2328581:2328596	2370039:2370054
WP_000909213.1|2324573_2326028_-	CHAP domain-containing protein	NA	U5U7D2	Staphylococcus_phage	100.0	2.6e-289
WP_000339146.1|2326038_2326341_-|holin	phage holin	holin	A0A2I6PET6	Staphylococcus_phage	100.0	7.0e-48
WP_000466784.1|2326476_2326776_-	DUF2951 domain-containing protein	NA	A0A2I6PER2	Staphylococcus_phage	100.0	2.0e-31
WP_000916020.1|2326821_2326986_-	XkdX family protein	NA	A0A2I6PES4	Staphylococcus_phage	100.0	4.9e-24
WP_001166599.1|2326978_2327368_-	DUF2977 domain-containing protein	NA	A0A2I6PER1	Staphylococcus_phage	100.0	2.2e-62
WP_031837459.1|2327367_2328834_-|plate	BppU family phage baseplate upper protein	plate	A0A2I6PES7	Staphylococcus_phage	95.3	2.5e-260
2328581:2328596	attL	AATTTTAAAATACCTT	NA	NA	NA	NA
WP_000429551.1|2328833_2330744_-	minor structural protein	NA	A0A2I6PF35	Staphylococcus_phage	100.0	0.0e+00
WP_000179858.1|2330759_2331050_-	hypothetical protein	NA	U5U457	Staphylococcus_phage	100.0	2.1e-49
WP_000384474.1|2331049_2332633_-	peptidase	NA	A0A2I6PEQ5	Staphylococcus_phage	100.0	9.3e-309
WP_001190533.1|2332641_2333466_-|tail	phage tail family protein	tail	A0A2I6PER3	Staphylococcus_phage	100.0	4.1e-159
WP_031762891.1|2333465_2339666_-|tail	phage tail tape measure protein	tail	A0A1X9IGU9	Staphylococcus_phage	100.0	0.0e+00
WP_108720645.1|2339679_2339838_-	hypothetical protein	NA	A0A2I6PES8	Staphylococcus_phage	92.3	1.3e-18
WP_000589167.1|2339879_2340230_-	hypothetical protein	NA	A0A2I6PEQ2	Staphylococcus_phage	100.0	1.1e-55
WP_000169127.1|2340287_2340743_-	Ig domain-containing protein	NA	A0A2I6PER6	Staphylococcus_phage	100.0	5.7e-78
WP_000807541.1|2340834_2341476_-|tail	tail protein	tail	A0A2I6PEP6	Staphylococcus_phage	99.1	5.0e-120
WP_001023802.1|2341510_2341906_-	DUF3168 domain-containing protein	NA	A0A2I6PDD8	Staphylococcus_phage	100.0	2.6e-66
WP_000110020.1|2341906_2342308_-	hypothetical protein	NA	A0A2I6PDD3	Staphylococcus_phage	100.0	6.2e-68
WP_000395495.1|2342304_2342637_-	hypothetical protein	NA	A0A2I6PDD6	Staphylococcus_phage	99.1	8.2e-58
WP_000050973.1|2342648_2342927_-|head,tail	phage gp6-like head-tail connector protein	head,tail	A0A2I6PEQ1	Staphylococcus_phage	100.0	2.1e-46
WP_001142738.1|2342995_2344159_-|capsid	phage major capsid protein	capsid	M9QQM0	Staphylococcus_phage	100.0	4.2e-218
WP_000061862.1|2344170_2344944_-|protease	Clp protease ClpP	protease	M1TAZ4	Staphylococcus_phage	98.4	3.0e-135
WP_001100671.1|2344927_2346166_-|portal	phage portal protein	portal	A0A2K9VBP0	Staphylococcus_phage	99.8	2.6e-234
WP_000153555.1|2346170_2347862_-|terminase	terminase large subunit	terminase	A0A2I6PE44	Staphylococcus_phage	100.0	0.0e+00
WP_000778932.1|2347851_2348157_-|terminase	terminase	terminase	A0A2I6PE27	Staphylococcus_phage	100.0	2.9e-49
WP_000160689.1|2348285_2348600_-	HNH endonuclease	NA	A0A2I6PDC4	Staphylococcus_phage	100.0	2.5e-56
WP_000513699.1|2348756_2349194_-	transcriptional regulator	NA	A0A2I6PDC2	Staphylococcus_phage	100.0	4.6e-77
WP_001793488.1|2349206_2350574_-	DEAD/DEAH box helicase	NA	A0A2I6PE95	Staphylococcus_phage	100.0	1.7e-263
WP_000665205.1|2350554_2350845_-	VRR-NUC domain-containing protein	NA	U5U7A3	Staphylococcus_phage	100.0	4.9e-51
WP_001801650.1|2350978_2351077_+	hypothetical protein	NA	A0A2I6PDP6	Staphylococcus_phage	100.0	3.7e-11
WP_000884870.1|2351185_2353633_-	hypothetical protein	NA	A0A2I6PEP4	Staphylococcus_phage	100.0	0.0e+00
WP_000265252.1|2353920_2354121_-	DUF1514 family protein	NA	A0A2I6PEP5	Staphylococcus_phage	100.0	4.9e-26
WP_000595263.1|2354188_2354341_-	transcriptional activator RinB	NA	A0A2I6PEM5	Staphylococcus_phage	100.0	2.0e-19
WP_001799187.1|2354337_2354733_-	hypothetical protein	NA	A7TWI1	Staphylococcus_phage	100.0	3.3e-66
WP_000608283.1|2354716_2354953_-	hypothetical protein	NA	A7TWI0	Staphylococcus_phage	100.0	3.6e-36
WP_000141259.1|2354945_2355149_-	hypothetical protein	NA	A7TWH9	Staphylococcus_phage	100.0	8.8e-31
WP_000195810.1|2355145_2355352_-	DUF1381 domain-containing protein	NA	S4V684	Staphylococcus_phage	100.0	7.6e-30
WP_001624699.1|2355388_2355925_-	hypothetical protein	NA	A1KX85	Staphylococcus_virus	98.3	3.3e-93
WP_078065696.1|2355917_2356112_-	hypothetical protein	NA	A1KX84	Staphylococcus_virus	96.9	4.8e-26
WP_001624702.1|2356074_2356329_-	DUF1024 family protein	NA	A0A0E3XC66	Staphylococcus_phage	98.8	7.2e-38
WP_001624703.1|2356321_2356687_-	hypothetical protein	NA	A1KX82	Staphylococcus_virus	100.0	4.2e-63
WP_000982708.1|2356683_2357133_-	hypothetical protein	NA	A0A2I6PDH2	Staphylococcus_phage	100.0	9.3e-81
WP_072533861.1|2357197_2357446_-	hypothetical protein	NA	A0A2I6PF06	Staphylococcus_phage	98.8	8.0e-42
WP_001624706.1|2357445_2357700_-	DUF3310 domain-containing protein	NA	A0A059T7J9	Staphylococcus_phage	97.6	1.4e-41
WP_001624708.1|2357699_2358101_-	PVL family protein	NA	A0A2I6PEL5	Staphylococcus_phage	99.2	3.6e-68
WP_001164629.1|2358100_2358286_-	DUF3113 family protein	NA	A0A2I6PEM8	Staphylococcus_phage	100.0	7.0e-27
WP_001802096.1|2358298_2360251_-	DNA polymerase	NA	A0A2I6PE86	Staphylococcus_phage	100.0	0.0e+00
WP_000645048.1|2360318_2360876_-	DUF2815 family protein	NA	A0A2I6PEP8	Staphylococcus_phage	100.0	1.8e-97
WP_000762530.1|2360901_2362068_-	DUF2800 domain-containing protein	NA	B5WZM3	Staphylococcus_phage	100.0	8.3e-222
WP_000985972.1|2362064_2362427_-	hypothetical protein	NA	B5WZM2	Staphylococcus_phage	100.0	8.3e-56
WP_000174998.1|2362441_2362765_-	hypothetical protein	NA	A0A2I6PE70	Staphylococcus_phage	100.0	6.5e-52
WP_001285951.1|2362843_2363005_-	DUF1270 domain-containing protein	NA	A0A2I6PEK6	Staphylococcus_phage	100.0	1.1e-20
WP_001124198.1|2363016_2363280_-	helix-turn-helix domain-containing protein	NA	A0A2I6PEL8	Staphylococcus_phage	100.0	2.5e-46
WP_001036299.1|2363304_2363520_-	hypothetical protein	NA	A0A2I6PEK7	Staphylococcus_phage	100.0	1.0e-32
WP_001566045.1|2363566_2363806_+	hypothetical protein	NA	A0A2I6PE22	Staphylococcus_phage	98.7	7.4e-37
WP_001115060.1|2364062_2364254_-	helix-turn-helix transcriptional regulator	NA	A0A2I6PEL6	Staphylococcus_phage	100.0	2.3e-28
WP_000429766.1|2364414_2364744_+	helix-turn-helix transcriptional regulator	NA	A0A2I6PEN2	Staphylococcus_phage	100.0	3.2e-54
WP_000525000.1|2364756_2365218_+	hypothetical protein	NA	A0A2I6PEK4	Staphylococcus_phage	99.3	1.3e-85
WP_000755718.1|2365235_2365670_+	hypothetical protein	NA	A0A2I6PEM0	Staphylococcus_phage	100.0	1.2e-24
WP_000449655.1|2365698_2366094_+	hypothetical protein	NA	A0A2I6PEJ7	Staphylococcus_phage	100.0	3.8e-70
WP_001795334.1|2366183_2366330_+	hypothetical protein	NA	A0A2I6PEK8	Staphylococcus_phage	100.0	1.2e-16
WP_000191464.1|2366326_2366941_-	hypothetical protein	NA	M9QRQ8	Staphylococcus_phage	99.5	2.5e-105
WP_000264751.1|2367066_2368272_+|integrase	site-specific integrase	integrase	A0A2I6PEN0	Staphylococcus_phage	100.0	7.7e-223
2370039:2370054	attR	AATTTTAAAATACCTT	NA	NA	NA	NA
