The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP029664	Staphylococcus aureus strain AR_0226 chromosome, complete genome	2880689	554862	642507	2880689	integrase,head,tail,holin,terminase,capsid,protease,portal	Staphylococcus_phage(92.21%)	111	568729:568746	593660:593677
WP_000197635.1|554862_555606_-|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_000917289.1|555780_556065_+	co-chaperone GroES	NA	A0A221S386	uncultured_virus	46.2	4.7e-14
WP_000240645.1|556140_557757_+	chaperonin GroEL	NA	A0A240F779	uncultured_virus	54.7	3.4e-157
WP_000128898.1|558458_558671_+	hypothetical protein	NA	Q4ZE86	Staphylococcus_phage	74.3	1.1e-23
WP_001293058.1|558667_559258_+|terminase	terminase small subunit	terminase	Q4ZE85	Staphylococcus_phage	95.8	1.1e-97
WP_001797573.1|559575_559953_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000022887.1|560117_560561_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_001045079.1|561413_562721_-	TrkH family potassium uptake protein	NA	NA	NA	NA	NA
WP_000825510.1|562881_563793_+	iron-hydroxamate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_000812010.1|563854_564700_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_000206639.1|565071_566295_-	ArgE/DapE family deacylase	NA	NA	NA	NA	NA
WP_000791407.1|566729_567785_+	bi-component leukocidin LukGH subunit H	NA	A0A1X9IGW5	Staphylococcus_phage	34.3	2.8e-35
WP_000595324.1|567806_568823_+	bi-component leukocidin LukGH subunit G	NA	A0A2I6PER8	Staphylococcus_phage	29.0	1.1e-25
568729:568746	attL	AAAAAGAAGAAAAATTAT	NA	NA	NA	NA
WP_000857199.1|569941_570979_-|integrase	site-specific integrase	integrase	A0A1X9H022	Staphylococcus_phage	99.7	3.8e-178
WP_001549185.1|571169_571883_-	toxin MazF	NA	A0A1X9H026	Staphylococcus_phage	100.0	5.0e-129
WP_000705246.1|571960_572143_-	hypothetical protein	NA	A0A0H3U4Z4	Staphylococcus_phage	100.0	4.1e-27
WP_000591749.1|572346_572688_-	hypothetical protein	NA	A0A2I6PF04	Staphylococcus_phage	100.0	4.6e-56
WP_000759682.1|572693_573626_-	ATP-dependent helicase	NA	A0A2I6PEZ7	Staphylococcus_phage	100.0	5.7e-173
WP_001031454.1|573641_574355_-	helix-turn-helix transcriptional regulator	NA	M9NUL0	Staphylococcus_phage	100.0	1.2e-130
WP_001801500.1|574317_574491_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000854072.1|574487_574751_+	helix-turn-helix transcriptional regulator	NA	A0A2I6PF09	Staphylococcus_phage	100.0	7.2e-41
WP_001025404.1|574766_574982_+	DUF2829 domain-containing protein	NA	A0A0H3U4C7	Staphylococcus_phage	100.0	4.8e-35
WP_000180411.1|574970_575300_-	hypothetical protein	NA	A0A0H3U4Z1	Staphylococcus_phage	100.0	4.6e-53
WP_001148642.1|575350_576103_+	oxidoreductase	NA	A0A0H3U319	Staphylococcus_phage	100.0	5.6e-139
WP_000549548.1|576291_576522_-	hypothetical protein	NA	A0A0H3U2T9	Staphylococcus_phage	100.0	9.4e-37
WP_001120199.1|576580_576901_+	DUF771 domain-containing protein	NA	A0A0H3U4C3	Staphylococcus_phage	100.0	1.5e-56
WP_001285960.1|576897_577059_+	DUF1270 domain-containing protein	NA	A0A0H3U4Y7	Staphylococcus_phage	100.0	3.8e-21
WP_001549178.1|577153_577414_+	DUF2482 family protein	NA	A0A0H3U2W4	Staphylococcus_phage	100.0	9.3e-41
WP_000291513.1|577453_577714_+	DUF1108 family protein	NA	A0A0H3U2T6	Staphylococcus_phage	100.0	6.8e-44
WP_001205732.1|577722_577986_+	hypothetical protein	NA	A0A2I6PDG2	Staphylococcus_phage	100.0	7.7e-43
WP_000700561.1|577994_579938_+	AAA family ATPase	NA	A0A2I6PDH3	Staphylococcus_phage	94.7	0.0e+00
WP_000138475.1|579939_580860_+	recombinase	NA	A0A2I6PDH5	Staphylococcus_phage	100.0	2.3e-166
WP_071665632.1|580940_581558_+	MBL fold metallo-hydrolase	NA	A0A0H3U2T4	Staphylococcus_phage	100.0	4.1e-87
WP_000934753.1|581558_582029_+	single-stranded DNA-binding protein	NA	A0A0H3U4B5	Staphylococcus_phage	100.0	4.4e-81
WP_000148333.1|582058_582952_+	DnaD domain-containing protein	NA	A0A1P8L6F0	Staphylococcus_phage	100.0	3.2e-141
WP_000338530.1|582958_583177_+	hypothetical protein	NA	A0A2I6PDG4	Staphylococcus_phage	100.0	1.0e-37
WP_000401977.1|583185_583590_+	RusA family crossover junction endodeoxyribonuclease	NA	A0A0H3U2W2	Staphylococcus_phage	100.0	1.4e-72
WP_000101288.1|583602_583971_+	hypothetical protein	NA	A0A0H3U2T3	Staphylococcus_phage	100.0	2.0e-49
WP_000131383.1|583974_584217_+	hypothetical protein	NA	A0A0H3U4B0	Staphylococcus_phage	100.0	1.1e-40
WP_001549172.1|584225_584597_+	hypothetical protein	NA	A0A0H3U4X7	Staphylococcus_phage	97.3	4.7e-54
WP_001065101.1|584589_584826_+	DUF1024 family protein	NA	A0A0H3U313	Staphylococcus_phage	100.0	5.3e-35
WP_000700108.1|584815_585058_+	hypothetical protein	NA	A0A2I6PF40	Staphylococcus_phage	100.0	3.7e-36
WP_000181819.1|585050_585584_+	dUTP pyrophosphatase	NA	A0A0H3U2T1	Staphylococcus_phage	100.0	1.6e-95
WP_001282074.1|585620_585866_+	hypothetical protein	NA	A0A2I6PDW7	Staphylococcus_phage	100.0	5.0e-36
WP_000195803.1|585862_586069_+	DUF1381 domain-containing protein	NA	A0A0H3U2R7	Staphylococcus_phage	100.0	1.3e-29
WP_000592207.1|586065_586452_+	hypothetical protein	NA	W5R986	Staphylococcus_phage	100.0	3.0e-64
WP_000595265.1|586448_586598_+	transcriptional activator RinB	NA	A0A1W6JPZ2	Staphylococcus_phage	100.0	4.8e-18
WP_000265043.1|586597_586798_+	DUF1514 family protein	NA	A0A2I6PDV9	Staphylococcus_phage	100.0	1.4e-28
WP_000590122.1|586825_587242_+	hypothetical protein	NA	G4KNP7	Staphylococcus_phage	100.0	1.3e-76
WP_000988336.1|587473_587773_+	HNH endonuclease	NA	A0EWY8	Staphylococcus_phage	100.0	4.6e-52
WP_000402904.1|587902_588247_+	hypothetical protein	NA	G4KNP9	Staphylococcus_phage	100.0	9.4e-57
WP_031923800.1|588243_589905_+|terminase	terminase large subunit	terminase	A0A2I6PDJ8	Staphylococcus_phage	99.8	0.0e+00
WP_000025274.1|589920_591108_+|portal	phage portal protein	portal	A0A2I6PDI1	Staphylococcus_phage	100.0	1.0e-219
WP_000642728.1|591091_591829_+|protease	Clp protease ClpP	protease	G4KNQ2	Staphylococcus_phage	100.0	1.8e-129
WP_000154559.1|591852_592998_+|capsid	phage major capsid protein	capsid	G4KNQ3	Staphylococcus_phage	100.0	9.6e-215
WP_000238236.1|593017_593302_+	hypothetical protein	NA	A0A2I6PDJ3	Staphylococcus_phage	100.0	1.8e-45
WP_000150936.1|593291_593576_+|head,tail	phage head-tail adapter protein	head,tail	A0A2I6PDJ5	Staphylococcus_phage	100.0	2.3e-45
WP_000755150.1|593559_593922_+|head,tail	head-tail adaptor protein	head,tail	G4KNQ4	Staphylococcus_phage	100.0	4.4e-65
593660:593677	attR	AAAAAGAAGAAAAATTAT	NA	NA	NA	NA
WP_000114229.1|593918_594323_+	hypothetical protein	NA	A0A0H3U2V1	Staphylococcus_phage	100.0	8.7e-70
WP_000565500.1|594319_594724_+	hypothetical protein	NA	G4KNQ6	Staphylococcus_phage	95.5	1.4e-67
WP_000260578.1|594727_595372_+|tail	phage tail protein	tail	A0A0H3U4E6	Staphylococcus_phage	100.0	6.5e-120
WP_094969769.1|595398_595638_+	hypothetical protein	NA	A0A075LYE8	Staphylococcus_phage	94.6	4.0e-30
WP_001096354.1|595687_596038_+	hypothetical protein	NA	A0A0H3U503	Staphylococcus_phage	100.0	1.3e-58
WP_001551779.1|596282_600812_+|tail	phage tail tape measure protein	tail	A0A1X9H084	Staphylococcus_phage	95.0	0.0e+00
WP_000567394.1|600808_602293_+|tail	phage tail protein	tail	A0A0H3U501	Staphylococcus_phage	100.0	2.0e-297
WP_000582165.1|602308_606094_+	hypothetical protein	NA	A0A1X9H0H3	Staphylococcus_phage	98.5	0.0e+00
WP_001153681.1|606083_606236_+	hypothetical protein	NA	D2JLG0	Staphylococcus_phage	100.0	5.2e-20
WP_001040261.1|606282_606570_+	hypothetical protein	NA	D2JLG1	Staphylococcus_phage	100.0	1.3e-43
WP_000539688.1|606627_606924_+	DUF2951 domain-containing protein	NA	D2JLG2	Staphylococcus_phage	100.0	2.9e-46
WP_011447039.1|607073_607250_+|holin	putative holin-like toxin	holin	D2JLG3	Staphylococcus_phage	98.3	2.2e-22
WP_001791821.1|607302_607410_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000611512.1|607461_607716_+|holin	phage holin	holin	D2JLG4	Staphylococcus_phage	100.0	4.1e-41
WP_000861038.1|607727_608483_+	CHAP domain-containing protein	NA	D2JLG5	Staphylococcus_phage	100.0	3.4e-152
WP_000919350.1|608673_609165_+	staphylokinase	NA	A0A1X9H028	Staphylococcus_phage	100.0	9.5e-87
WP_020444758.1|609691_610150_+	amidase	NA	R9QTN8	Staphylococcus_phage	98.7	4.9e-85
WP_000727649.1|610244_610694_-	chemotaxis-inhibiting protein CHIPS	NA	A0A1P8L6A8	Staphylococcus_phage	100.0	1.1e-78
WP_000702263.1|611378_611729_+	complement inhibitor SCIN-A	NA	A0A1P8L6B0	Staphylococcus_phage	100.0	7.5e-54
WP_001791826.1|611781_612042_-	hypothetical protein	NA	M9NS66	Staphylococcus_phage	100.0	2.3e-23
WP_000669789.1|612352_612532_-	hypothetical protein	NA	A0A1W6JQ29	Staphylococcus_phage	100.0	2.2e-25
WP_000669720.1|613489_615544_+	MAP domain-containing protein	NA	NA	NA	NA	NA
WP_001068542.1|615867_617154_-	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_000990056.1|617353_617452_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000681968.1|617694_617871_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000691584.1|618134_618515_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000991302.1|618511_619408_+	phenol-soluble modulin export ABC transporter ATP-binding protein PmtA	NA	A0A2H4PQG7	Staphylococcus_phage	30.2	1.1e-16
WP_000645727.1|619408_620089_+	phenol-soluble modulin export ABC transporter permease subunit PmtB	NA	NA	NA	NA	NA
WP_000763048.1|620085_620958_+	phenol-soluble modulin export ABC transporter ATP-binding protein PmtC	NA	A0A2H4PQG7	Staphylococcus_phage	35.2	6.1e-28
WP_001221651.1|620957_621698_+	phenol-soluble modulin export ABC transporter permease subunit PmtD	NA	NA	NA	NA	NA
WP_000182842.1|621763_622327_-	thioredoxin family protein	NA	NA	NA	NA	NA
WP_000966288.1|622447_622972_+	membrane protein	NA	NA	NA	NA	NA
WP_001033971.1|623031_623589_+	DUF1700 domain-containing protein	NA	NA	NA	NA	NA
WP_000713072.1|623585_624428_+	DUF4097 family beta strand repeat protein	NA	NA	NA	NA	NA
WP_001188077.1|624484_625525_-	linear amide C-N hydrolase	NA	NA	NA	NA	NA
WP_000267034.1|625975_626149_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000205106.1|626721_627123_-	YolD-like family protein	NA	U3PG23	Staphylococcus_phage	42.9	6.0e-23
WP_000181322.1|627392_628421_+	lactonase family protein	NA	NA	NA	NA	NA
WP_001021214.1|628540_629920_-	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_001790680.1|629971_630145_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001140871.1|630339_631269_-	manganese-dependent inorganic pyrophosphatase	NA	NA	NA	NA	NA
WP_000149686.1|631321_631882_-	cysteine hydrolase	NA	G3MA16	Bacillus_virus	41.2	2.0e-32
WP_000275730.1|632253_633351_+	pectate lyase	NA	U5PWM6	Bacillus_phage	34.6	1.9e-47
WP_110418047.1|633555_635118_+	SLC13 family permease	NA	NA	NA	NA	NA
WP_001802312.1|635128_635236_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001177817.1|635307_636102_-	prephenate dehydratase	NA	NA	NA	NA	NA
WP_000897635.1|636121_637198_-	nitric oxide synthase oxygenase	NA	NA	NA	NA	NA
WP_000284431.1|637381_638851_+	nicotinate phosphoribosyltransferase	NA	G3MA18	Bacillus_virus	45.1	4.5e-108
WP_000040873.1|638843_639665_+	ammonia-dependent NAD(+) synthetase	NA	G3MA24	Bacillus_virus	52.7	1.8e-69
WP_000011538.1|639935_640538_+	DUF2179 domain-containing protein	NA	NA	NA	NA	NA
WP_000669862.1|640518_640692_+	NETI motif-containing protein	NA	NA	NA	NA	NA
WP_000434933.1|640983_641310_-	staphostatin A	NA	NA	NA	NA	NA
WP_000827748.1|641340_642507_-|protease	cysteine protease staphopain A	protease	NA	NA	NA	NA
>prophage 2
NZ_CP029664	Staphylococcus aureus strain AR_0226 chromosome, complete genome	2880689	702479	803681	2880689	protease,tRNA,transposase	Staphylococcus_phage(91.23%)	99	NA	NA
WP_001549130.1|702479_703841_-|transposase	ISL3 family transposase	transposase	NA	NA	NA	NA
WP_000063582.1|704333_705395_+	PTS transporter subunit IIC	NA	NA	NA	NA	NA
WP_000649907.1|705652_707110_+	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_001144055.1|707096_707825_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	42.7	1.0e-36
WP_001789049.1|707960_709103_+|tRNA	tRNA epoxyqueuosine(34) reductase QueG	tRNA	NA	NA	NA	NA
WP_000181398.1|709107_709578_+|tRNA	tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL	tRNA	NA	NA	NA	NA
WP_001251224.1|709736_710336_+	glucosamine-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_000031108.1|710360_710513_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000901021.1|711289_711685_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000116224.1|711880_713266_+	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_000669376.1|713728_714550_-	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_000437967.1|714712_715825_+	GAF domain-containing sensor histidine kinase	NA	NA	NA	NA	NA
WP_001045133.1|715846_716470_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_000375864.1|716825_717290_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_000992527.1|717468_718593_+	DUF445 domain-containing protein	NA	NA	NA	NA	NA
WP_000290301.1|718661_719006_+	YlbF/YmcA family competence regulator	NA	A0A1X9I5Y8	Streptococcus_phage	29.7	7.5e-06
WP_001791795.1|719388_719487_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000238227.1|719777_720974_+	exonuclease SbcCD subunit D	NA	NA	NA	NA	NA
WP_000584648.1|720963_723900_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_001244175.1|723896_724838_+	3'-5' exoribonuclease YhaM	NA	NA	NA	NA	NA
WP_000782121.1|724958_725921_-	foldase	NA	NA	NA	NA	NA
WP_110418050.1|726125_726683_-	DUF3267 domain-containing protein	NA	NA	NA	NA	NA
WP_000648118.1|727415_727781_-	YtxH domain-containing protein	NA	NA	NA	NA	NA
WP_000004981.1|727922_728345_-	HIT family protein	NA	NA	NA	NA	NA
WP_000216878.1|728478_729219_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	29.8	1.2e-24
WP_001245769.1|729211_730435_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_000737976.1|730558_731062_-	signal transduction protein TRAP	NA	NA	NA	NA	NA
WP_001790154.1|731224_731335_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000233526.1|731324_732362_+	uroporphyrinogen decarboxylase	NA	NA	NA	NA	NA
WP_000162881.1|732419_733343_+	ferrochelatase	NA	NA	NA	NA	NA
WP_000167538.1|733366_734767_+	protoporphyrinogen oxidase	NA	NA	NA	NA	NA
WP_000132890.1|735089_735644_+	serine hydrolase family protein	NA	NA	NA	NA	NA
WP_000226886.1|738900_739440_-	hypothetical protein	NA	Q4ZCB9	Staphylococcus_virus	76.8	2.0e-61
WP_000473596.1|740238_741174_+	beta-channel forming cytolysin	NA	A0A2H4PQI5	Staphylococcus_phage	100.0	1.4e-174
WP_000782464.1|741175_742159_+	bi-component leukocidin LukED subunit D	NA	A0A2H4PQH7	Staphylococcus_phage	99.1	2.3e-185
WP_000416759.1|742400_742544_+	gallidermin/nisin family lantibiotic	NA	NA	NA	NA	NA
WP_000416756.1|743280_743424_+	gallidermin/nisin family lantibiotic	NA	A0A2H4PQH4	Staphylococcus_phage	80.9	5.3e-14
WP_001092605.1|743488_746482_+	lantibiotic dehydratase	NA	A0A2H4PQG8	Staphylococcus_phage	97.3	0.0e+00
WP_000566596.1|746474_747719_+	lanthionine synthetase C family protein	NA	A0A2H4PQH9	Staphylococcus_phage	100.0	5.1e-238
WP_000504439.1|747734_748253_+	enterotoxin	NA	A0A2H4PQG9	Staphylococcus_phage	100.0	2.0e-95
WP_000691541.1|748262_749636_+	S8 family serine peptidase	NA	A0A2H4PQH1	Staphylococcus_phage	100.0	2.9e-258
WP_001096791.1|749658_750351_+	lantibiotic protection ABC transporter ATP-binding subunit	NA	A0A2H4PQG7	Staphylococcus_phage	100.0	6.2e-124
WP_000581552.1|750347_751109_+	lantibiotic immunity ABC transporter MutE/EpiE family permease subunit	NA	A0A2H4PQH2	Staphylococcus_phage	100.0	4.4e-131
WP_000586140.1|751105_751804_+	hypothetical protein	NA	A0A2H4PQH0	Staphylococcus_phage	94.4	3.8e-113
WP_001092763.1|752277_752844_-	DUF4888 domain-containing protein	NA	A0A2H4PQH6	Staphylococcus_phage	100.0	3.3e-99
WP_001039435.1|753807_754515_+|protease	serine protease SplA	protease	A0A2H4PQN3	Staphylococcus_phage	100.0	2.6e-130
WP_001039447.1|754639_755362_+|protease	serine protease SplB	protease	A0A2H4PQN0	Staphylococcus_phage	99.6	2.4e-131
WP_001038867.1|755419_756139_+|protease	serine protease SplC	protease	A0A2H4PQP7	Staphylococcus_phage	99.2	1.2e-130
WP_001038704.1|756259_756979_+|protease	serine protease SplD	protease	A0A2H4PQP9	Staphylococcus_phage	99.6	4.6e-130
WP_011447030.1|756927_757035_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001038759.1|757136_757853_+|protease	serine protease SplE	protease	A0A2H4PQN5	Staphylococcus_phage	100.0	1.1e-131
WP_001038688.1|758003_758723_+|protease	serine protease SplF	protease	A0A2H4PQP1	Staphylococcus_phage	100.0	1.1e-131
WP_001791797.1|758787_758922_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011443644.1|758902_760642_+	type I restriction-modification system subunit M	NA	A0A2H4PQP4	Staphylococcus_phage	99.4	4.4e-288
WP_000072576.1|760634_761834_+	restriction endonuclease subunit S	NA	A0A2H4PQP5	Staphylococcus_phage	99.7	5.5e-229
WP_000831218.1|762683_766796_+	SMEK domain-containing protein	NA	A0A2H4PQT3	Staphylococcus_phage	100.0	0.0e+00
WP_002868972.1|767334_767694_+	DUF1433 domain-containing protein	NA	NA	NA	NA	NA
WP_001791893.1|768041_768143_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001801861.1|768265_768361_-	type I toxin-antitoxin system Fst family toxin PepA1	NA	NA	NA	NA	NA
WP_001549059.1|768563_768707_+|transposase	transposase	transposase	A0A2H4PQU1	Staphylococcus_phage	100.0	6.4e-20
WP_000070811.1|769310_769694_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000375476.1|769704_769881_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000809857.1|769882_770068_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000494956.1|770181_770823_+	ImmA/IrrE family metallo-endopeptidase	NA	A0A2H4PQN8	Staphylococcus_phage	93.2	2.6e-76
WP_000414205.1|771040_771592_-	hypothetical protein	NA	A0A2H4PQN4	Staphylococcus_phage	94.1	1.0e-20
WP_000627551.1|771689_772034_-	DUF3969 family protein	NA	A0A2H4PQN6	Staphylococcus_phage	92.0	6.3e-53
WP_000188802.1|772074_772545_-	hypothetical protein	NA	A0A2H4PQM7	Staphylococcus_phage	80.1	7.0e-63
WP_000669037.1|772545_772701_-	hypothetical protein	NA	A0A2H4PQM7	Staphylococcus_phage	96.9	4.7e-08
WP_000070653.1|772776_773772_-	DUF4352 domain-containing protein	NA	A0A2H4PQN2	Staphylococcus_phage	96.4	7.1e-73
WP_001795535.1|773852_774503_-	calcium-binding protein	NA	A0A2H4PQM8	Staphylococcus_phage	88.4	2.7e-44
WP_011443643.1|774805_775261_+	DUF4909 domain-containing protein	NA	A0A2H4PQN7	Staphylococcus_phage	98.6	3.0e-79
WP_000348360.1|775419_776898_+	o-succinylbenzoate--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	97.0	2.0e-281
WP_000778523.1|776902_777904_+	o-succinylbenzoate synthase	NA	A0A2H4PQM0	Staphylococcus_phage	97.6	4.8e-186
WP_000718107.1|777900_778158_-	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	100.0	7.2e-46
WP_000672014.1|778223_778697_+	nucleoside triphosphatase YtkD	NA	A0A2H4PQM4	Staphylococcus_phage	98.1	4.7e-83
WP_002868962.1|778701_779448_+	S9 family peptidase	NA	A0A2H4PQM6	Staphylococcus_phage	98.4	7.1e-142
WP_000109906.1|780443_782036_-	phosphoenolpyruvate carboxykinase (ATP)	NA	A0A2H4PQN1	Staphylococcus_phage	100.0	0.0e+00
WP_000933822.1|782406_783600_+	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	99.7	1.9e-218
WP_000366154.1|783724_784633_+	NERD domain-containing protein	NA	A0A2H4PQQ8	Staphylococcus_phage	98.7	3.2e-136
WP_000453320.1|784844_785678_+	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	98.6	9.6e-156
WP_000623471.1|787760_788114_-	CrcB family protein	NA	A0A2H4PQQ7	Staphylococcus_phage	99.1	1.0e-21
WP_110418051.1|788110_788476_-	fluoride efflux transporter CrcB	NA	A0A2H4PQR0	Staphylococcus_phage	98.3	2.0e-57
WP_000091445.1|788731_789034_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001096494.1|789293_790007_+	transaldolase	NA	M1PR54	Cyanophage	35.3	5.5e-19
WP_001168904.1|790446_791082_-|protease	CPBP family intramembrane metalloprotease SdpA	protease	NA	NA	NA	NA
WP_001030465.1|791377_791821_+	hypothetical protein	NA	A0A2H4PQT8	Staphylococcus_phage	85.0	3.0e-55
WP_001153742.1|791807_792251_-	competence protein ComK	NA	NA	NA	NA	NA
WP_000671052.1|792363_792834_-	RNA polymerase sigma factor	NA	A0A2H4PQT5	Staphylococcus_phage	99.4	1.0e-82
WP_000384171.1|793032_793257_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001032833.1|793532_794387_+	autolysin	NA	Q4ZCC7	Staphylococcus_virus	38.6	9.8e-39
WP_000163235.1|794681_795077_-	arsenate reductase (thioredoxin)	NA	A0A2H4PQT9	Staphylococcus_phage	100.0	6.3e-73
WP_110418052.1|795094_796387_-	arsenite efflux transporter membrane subunit ArsB	NA	A0A2H4PQU3	Staphylococcus_phage	99.3	1.1e-227
WP_000221179.1|796386_796701_-	winged helix-turn-helix transcriptional regulator	NA	A0A2H4PQT4	Staphylococcus_phage	100.0	2.0e-53
WP_001261677.1|797223_798726_+	FAD-dependent oxidoreductase	NA	A0A2H4PQX2	Staphylococcus_phage	100.0	2.3e-30
WP_000384181.1|799218_800250_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	99.4	4.8e-197
WP_000493892.1|800256_800889_+	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	99.5	1.7e-112
WP_001159022.1|800899_802081_+	3,4-dihydroxy-2-butanone-4-phosphate synthase	NA	A0A2H4PQS2	Staphylococcus_phage	99.7	6.6e-227
WP_001008551.1|802093_802558_+	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	99.4	5.8e-70
WP_001196354.1|802679_803681_-	proline dehydrogenase	NA	A0A2H4PQT6	Staphylococcus_phage	99.7	9.0e-185
>prophage 3
NZ_CP029664	Staphylococcus aureus strain AR_0226 chromosome, complete genome	2880689	806841	819570	2880689	tRNA	Staphylococcus_phage(100.0%)	6	NA	NA
WP_000764419.1|806841_807405_-	methyltransferase domain-containing protein	NA	A0A2H4PQV0	Staphylococcus_phage	99.5	8.3e-103
WP_000526539.1|807401_808355_-	TIGR01212 family radical SAM protein	NA	A0A2H4PQV5	Staphylococcus_phage	100.0	2.2e-79
WP_001025061.1|808464_809646_+	MFS transporter	NA	A0A2H4PQR6	Staphylococcus_phage	100.0	5.6e-218
WP_162563024.1|809936_812351_+|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	99.1	0.0e+00
WP_000836465.1|812372_812684_+	rhodanese-like domain-containing protein	NA	A0A2H4PQR9	Staphylococcus_phage	100.0	1.6e-52
WP_110418054.1|813009_819570_+	LPXTG-anchored repetitive surface protein SasC	NA	A0A2H4PQU6	Staphylococcus_phage	98.1	2.0e-304
>prophage 4
NZ_CP029664	Staphylococcus aureus strain AR_0226 chromosome, complete genome	2880689	945032	954075	2880689	tRNA	uncultured_Mediterranean_phage(50.0%)	7	NA	NA
WP_001005767.1|945032_946037_+	Holliday junction branch migration DNA helicase RuvB	NA	B3GAM6	uncultured_virus	29.1	1.7e-05
WP_001019172.1|946038_947064_+|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_001112045.1|947086_948226_+|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.7	5.4e-85
WP_001160682.1|948244_948505_+	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	35.3	8.2e-05
WP_000749795.1|948779_951059_+	protein translocase subunit SecDF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.8	1.8e-31
WP_000594993.1|951261_953535_+	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	28.8	1.2e-62
WP_000364542.1|953556_954075_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	46.5	5.6e-29
>prophage 5
NZ_CP029664	Staphylococcus aureus strain AR_0226 chromosome, complete genome	2880689	1023212	1031524	2880689	tRNA	Caulobacter_phage(16.67%)	7	NA	NA
WP_001217261.1|1023212_1025012_+	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	36.0	4.6e-54
WP_001283055.1|1025235_1026342_+	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	38.1	1.1e-37
WP_000624584.1|1026472_1027150_+|tRNA	tRNA (adenine-N(1))-methyltransferase	tRNA	NA	NA	NA	NA
WP_000683931.1|1027152_1028253_+	Nif3-like dinuclear metal center hexameric protein	NA	A0A1S5V250	Saudi_moumouvirus	29.6	5.2e-08
WP_001062180.1|1028366_1029713_+	DEAD/DEAH box helicase	NA	A0A1V0SIR5	Klosneuvirus	33.7	5.3e-55
WP_000924214.1|1029722_1030613_+	deoxyribonuclease IV	NA	A0A2H4UU70	Bodo_saltans_virus	33.1	2.0e-26
WP_001213908.1|1030738_1031524_+	metal ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.3	8.0e-19
>prophage 6
NZ_CP029664	Staphylococcus aureus strain AR_0226 chromosome, complete genome	2880689	1087355	1174593	2880689	plate,tRNA,integrase,head,tail,holin,terminase,capsid,protease,portal	Staphylococcus_phage(84.21%)	106	1092318:1092338	1138211:1138231
WP_000987769.1|1087355_1089107_+	HAMP domain-containing protein	NA	A0A1V0SGX0	Hokovirus	33.6	1.7e-21
WP_001548912.1|1089351_1090281_+	DUF1672 domain-containing protein	NA	NA	NA	NA	NA
WP_001033767.1|1090273_1091119_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001548909.1|1091145_1092300_+	hypothetical protein	NA	B5WZK7	Staphylococcus_phage	97.7	3.9e-115
1092318:1092338	attL	AGGGCAAAAAAAGGGCGGATT	NA	NA	NA	NA
WP_000264751.1|1092342_1093548_-|integrase	site-specific integrase	integrase	A0A2I6PEN0	Staphylococcus_phage	100.0	7.7e-223
WP_000191466.1|1093673_1094288_+	hypothetical protein	NA	A0A2I6PEZ0	Staphylococcus_phage	100.0	6.7e-106
WP_001795334.1|1094284_1094431_-	hypothetical protein	NA	A0A2I6PEK8	Staphylococcus_phage	100.0	1.2e-16
WP_000449655.1|1094520_1094916_-	hypothetical protein	NA	A0A2I6PEJ7	Staphylococcus_phage	100.0	3.8e-70
WP_000755722.1|1094944_1095379_-	hypothetical protein	NA	A0A2I6PEM0	Staphylococcus_phage	96.5	3.6e-21
WP_000525001.1|1095396_1095858_-	hypothetical protein	NA	A0A2I6PEK4	Staphylococcus_phage	98.7	2.9e-85
WP_000429766.1|1095870_1096200_-	helix-turn-helix transcriptional regulator	NA	A0A2I6PEN2	Staphylococcus_phage	100.0	3.2e-54
WP_001115060.1|1096360_1096552_+	helix-turn-helix transcriptional regulator	NA	A0A2I6PEL6	Staphylococcus_phage	100.0	2.3e-28
WP_001548903.1|1096808_1097048_-	hypothetical protein	NA	A0A2I6PE22	Staphylococcus_phage	100.0	6.7e-38
WP_001036299.1|1097094_1097310_+	hypothetical protein	NA	A0A2I6PEK7	Staphylococcus_phage	100.0	1.0e-32
WP_001124198.1|1097334_1097598_+	helix-turn-helix domain-containing protein	NA	A0A2I6PEL8	Staphylococcus_phage	100.0	2.5e-46
WP_000829612.1|1097863_1098181_+	hypothetical protein	NA	A0A2I6PEL3	Staphylococcus_phage	100.0	1.1e-35
WP_000163431.1|1098173_1098476_+	DUF2482 family protein	NA	A0A1X9IGX2	Staphylococcus_phage	100.0	2.4e-48
WP_000291481.1|1098480_1098741_+	DUF1108 family protein	NA	A0A2I6PEM2	Staphylococcus_phage	100.0	3.4e-43
WP_000985979.1|1098754_1099117_+	hypothetical protein	NA	A0A2I6PEM7	Staphylococcus_phage	100.0	3.7e-56
WP_000762552.1|1099113_1100280_+	DUF2800 domain-containing protein	NA	A0A2I6PEL9	Staphylococcus_phage	100.0	1.4e-221
WP_000645048.1|1100305_1100863_+	DUF2815 family protein	NA	A0A2I6PEP8	Staphylococcus_phage	100.0	1.8e-97
WP_001801657.1|1100930_1102883_+	DNA polymerase	NA	A0A2I6PEL4	Staphylococcus_phage	100.0	0.0e+00
WP_001164629.1|1102895_1103081_+	DUF3113 family protein	NA	A0A2I6PEM8	Staphylococcus_phage	100.0	7.0e-27
WP_000113974.1|1103080_1103482_+	PVL family protein	NA	A0A2I6PEL5	Staphylococcus_phage	100.0	1.2e-68
WP_000022728.1|1103481_1103739_+	DUF3310 domain-containing protein	NA	A0A2I6PEN5	Staphylococcus_phage	100.0	2.6e-43
WP_000235324.1|1103741_1103942_+	hypothetical protein	NA	A0A2I6PEM3	Staphylococcus_phage	100.0	2.5e-30
WP_000132194.1|1103956_1104199_+	hypothetical protein	NA	A0A2I6PEV3	Staphylococcus_phage	100.0	1.5e-40
WP_001065039.1|1104213_1104462_+	DUF1024 family protein	NA	A0A2I6PEP2	Staphylococcus_phage	100.0	1.4e-38
WP_000185671.1|1104454_1104991_+	hypothetical protein	NA	A0A2I6PEN6	Staphylococcus_phage	100.0	1.6e-95
WP_000195794.1|1105027_1105234_+	DUF1381 domain-containing protein	NA	A0A2I6PEM9	Staphylococcus_phage	100.0	1.6e-19
WP_000141180.1|1105230_1105434_+	hypothetical protein	NA	A0A2I6PEQ8	Staphylococcus_phage	100.0	3.4e-30
WP_000608275.1|1105426_1105663_+	hypothetical protein	NA	A0A2I6PEM4	Staphylococcus_phage	100.0	2.8e-36
WP_000592202.1|1105655_1106042_+	hypothetical protein	NA	A0A1X9IGZ2	Staphylococcus_phage	100.0	3.0e-64
WP_000595263.1|1106038_1106191_+	transcriptional activator RinB	NA	A0A2I6PEM5	Staphylococcus_phage	100.0	2.0e-19
WP_000265252.1|1106258_1106459_+	DUF1514 family protein	NA	A0A2I6PEP5	Staphylococcus_phage	100.0	4.9e-26
WP_000884870.1|1106746_1109194_+	hypothetical protein	NA	A0A2I6PEP4	Staphylococcus_phage	100.0	0.0e+00
WP_001801650.1|1109302_1109401_-	hypothetical protein	NA	A0A2I6PDP6	Staphylococcus_phage	100.0	3.7e-11
WP_001548892.1|1109534_1109825_+	VRR-NUC domain-containing protein	NA	A0A2I6PE31	Staphylococcus_phage	100.0	6.5e-51
WP_001801648.1|1109805_1111173_+	DEAD/DEAH box helicase	NA	A0A2I6PE95	Staphylococcus_phage	99.8	3.0e-263
WP_000528512.1|1111185_1111623_+	transcriptional regulator	NA	A0A2I6PEN3	Staphylococcus_phage	100.0	7.9e-77
WP_000160686.1|1111779_1112094_+	HNH endonuclease	NA	A0A2I6PEN4	Staphylococcus_phage	100.0	5.0e-57
WP_000778933.1|1112220_1112526_+|terminase	terminase	terminase	A0A2I6PEQ6	Staphylococcus_phage	100.0	2.9e-49
WP_000153540.1|1112515_1114207_+|terminase	terminase large subunit	terminase	A0A1X9IGU0	Staphylococcus_phage	100.0	0.0e+00
WP_001100664.1|1114211_1115450_+|portal	phage portal protein	portal	A0A2I6PER5	Staphylococcus_phage	100.0	6.9e-235
WP_000061866.1|1115433_1116207_+|protease	Clp protease ClpP	protease	A0A2I6PEQ7	Staphylococcus_phage	100.0	2.4e-137
WP_001142734.1|1116218_1117382_+|capsid	phage major capsid protein	capsid	A0A2I6PEQ3	Staphylococcus_phage	100.0	1.2e-217
WP_000050973.1|1117450_1117729_+|head,tail	phage gp6-like head-tail connector protein	head,tail	A0A2I6PEQ1	Staphylococcus_phage	100.0	2.1e-46
WP_000395498.1|1117740_1118073_+	hypothetical protein	NA	A0A2I6PES3	Staphylococcus_phage	100.0	4.1e-57
WP_000110023.1|1118069_1118471_+	hypothetical protein	NA	A0A2I6PF54	Staphylococcus_phage	100.0	8.1e-68
WP_001023806.1|1118471_1118867_+	DUF3168 domain-containing protein	NA	A0A2I6PEQ4	Staphylococcus_phage	100.0	8.8e-67
WP_000807536.1|1118901_1119543_+|tail	tail protein	tail	A0A2I6PEP6	Staphylococcus_phage	100.0	5.9e-121
WP_000169127.1|1119634_1120090_+	Ig domain-containing protein	NA	A0A2I6PER6	Staphylococcus_phage	100.0	5.7e-78
WP_000589167.1|1120147_1120498_+	hypothetical protein	NA	A0A2I6PEQ2	Staphylococcus_phage	100.0	1.1e-55
WP_000438833.1|1120539_1120698_+	hypothetical protein	NA	A0A2I6PES8	Staphylococcus_phage	100.0	1.2e-19
WP_001003408.1|1120711_1126912_+|tail	phage tail tape measure protein	tail	A0A1X9IGU9	Staphylococcus_phage	99.7	0.0e+00
WP_001190533.1|1126911_1127736_+|tail	phage tail family protein	tail	A0A2I6PER3	Staphylococcus_phage	100.0	4.1e-159
WP_000384474.1|1127744_1129328_+	peptidase	NA	A0A2I6PEQ5	Staphylococcus_phage	100.0	9.3e-309
WP_000179858.1|1129327_1129618_+	hypothetical protein	NA	U5U457	Staphylococcus_phage	100.0	2.1e-49
WP_000429558.1|1129633_1131544_+	minor structural protein	NA	A0A2I6PEQ9	Staphylococcus_phage	100.0	0.0e+00
WP_000067127.1|1131543_1133010_+|plate	BppU family phage baseplate upper protein	plate	A0A2I6PES7	Staphylococcus_phage	100.0	1.5e-273
WP_001166599.1|1133009_1133399_+	DUF2977 domain-containing protein	NA	A0A2I6PER1	Staphylococcus_phage	100.0	2.2e-62
WP_000916020.1|1133391_1133556_+	XkdX family protein	NA	A0A2I6PES4	Staphylococcus_phage	100.0	4.9e-24
WP_000466784.1|1133601_1133901_+	DUF2951 domain-containing protein	NA	A0A2I6PER2	Staphylococcus_phage	100.0	2.0e-31
WP_000339146.1|1134036_1134339_+|holin	phage holin	holin	A0A2I6PET6	Staphylococcus_phage	100.0	7.0e-48
WP_000909220.1|1134349_1135804_+	CHAP domain-containing protein	NA	A0A2I6PET7	Staphylococcus_phage	100.0	5.7e-289
WP_000239545.1|1136193_1137132_+	Panton-Valentine bi-component leukocidin subunit S	NA	A0A2I6PER8	Staphylococcus_phage	100.0	3.7e-180
WP_024937002.1|1137127_1138111_+	Panton-Valentine bi-component leukocidin subunit F	NA	A0A2I6PEU3	Staphylococcus_phage	100.0	4.0e-185
WP_061390271.1|1138293_1138545_+	hypothetical protein	NA	A0ZS61	Staphylococcus_virus	100.0	2.4e-25
1138211:1138231	attR	AGGGCAAAAAAAGGGCGGATT	NA	NA	NA	NA
WP_000476873.1|1138635_1139553_+	DUF1672 domain-containing protein	NA	NA	NA	NA	NA
WP_000472936.1|1139609_1140548_+	DUF1672 domain-containing protein	NA	NA	NA	NA	NA
WP_001033757.1|1140540_1140747_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000913219.1|1140761_1141676_+	DUF1672 domain-containing protein	NA	NA	NA	NA	NA
WP_001789947.1|1141874_1141994_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001186912.1|1142272_1142818_+	ECF transporter S component	NA	NA	NA	NA	NA
WP_001151997.1|1142923_1143172_-	ferredoxin	NA	A0A127AYY7	Bacillus_phage	48.0	8.3e-15
WP_001163801.1|1143279_1144233_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000902119.1|1144222_1145602_+	ATP-dependent DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	33.6	2.9e-56
WP_000069282.1|1145754_1147215_+	elastin-binding protein EbpS	NA	NA	NA	NA	NA
WP_001789943.1|1147339_1147456_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001174260.1|1147616_1148603_+	YpdA family putative bacillithiol disulfide reductase	NA	NA	NA	NA	NA
WP_000681756.1|1148717_1149686_-	asparaginase	NA	NA	NA	NA	NA
WP_000644391.1|1149762_1150422_+	(d)CMP kinase	NA	NA	NA	NA	NA
WP_001789945.1|1150452_1150569_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001789944.1|1150685_1150877_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000133954.1|1151133_1152309_+	30S ribosomal protein S1	NA	NA	NA	NA	NA
WP_000165536.1|1152530_1153841_+	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_110418059.1|1153857_1154856_+	NAD(P)H-dependent glycerol-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_001043863.1|1155026_1155299_+	HU family DNA-binding protein	NA	A7KV42	Bacillus_phage	73.3	4.2e-28
WP_000450553.1|1155729_1156302_+	heptaprenyl diphosphate synthase component 1	NA	NA	NA	NA	NA
WP_000774684.1|1156304_1157030_+	demethylmenaquinone methyltransferase	NA	NA	NA	NA	NA
WP_001817755.1|1157046_1157991_+	heptaprenyl diphosphate synthase subunit II	NA	A0A1V0SE37	Indivirus	24.4	1.3e-10
WP_000442480.1|1158082_1158532_+	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.8	2.4e-28
WP_000789522.1|1158740_1158941_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001269929.1|1159326_1160493_+	chorismate synthase	NA	A0A291AU41	Pandoravirus	32.1	7.6e-34
WP_000776323.1|1160518_1161583_+	3-dehydroquinate synthase	NA	NA	NA	NA	NA
WP_000245895.1|1161592_1162891_+	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
WP_011443634.1|1163038_1164142_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000004947.1|1164155_1164731_+	IDEAL domain-containing protein	NA	G3MAV7	Bacillus_virus	27.2	2.7e-08
WP_000152734.1|1164720_1165308_+	DUF1405 domain-containing protein	NA	NA	NA	NA	NA
WP_001827022.1|1165379_1166060_+	zinc metallopeptidase	NA	NA	NA	NA	NA
WP_000839926.1|1166396_1166714_+	nucleotide pyrophosphohydrolase	NA	NA	NA	NA	NA
WP_000690027.1|1166954_1168097_+	N-acetyl-alpha-D-glucosaminyl L-malate synthase BshA	NA	NA	NA	NA	NA
WP_000361544.1|1168101_1169304_+|tRNA	CCA tRNA nucleotidyltransferase	tRNA	H7BUW3	unidentified_phage	42.5	3.2e-35
WP_000049919.1|1169290_1170262_+	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_000525078.1|1170285_1172979_+	ATP-dependent helicase DinG	NA	A0A1X9I5C8	Streptococcus_phage	34.4	8.2e-47
WP_000858789.1|1173300_1174593_+|tRNA	asparagine--tRNA ligase	tRNA	A0A2P1EMB4	Moumouvirus	30.0	1.9e-54
>prophage 7
NZ_CP029664	Staphylococcus aureus strain AR_0226 chromosome, complete genome	2880689	1617895	1626368	2880689		Synechococcus_phage(33.33%)	9	NA	NA
WP_000238664.1|1617895_1618462_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	40.1	6.1e-29
WP_000030812.1|1618464_1619493_-	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	41.4	1.3e-61
WP_000483713.1|1619485_1620970_-	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	31.7	3.2e-45
WP_000032727.1|1620948_1623138_-	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	39.7	1.0e-140
WP_000666799.1|1623130_1623802_-	phosphoribosylformylglycinamidine synthase I	NA	NA	NA	NA	NA
WP_000848350.1|1623803_1624067_-	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
WP_000174053.1|1624066_1624771_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	M4R1E8	Synechococcus_phage	42.1	7.3e-48
WP_001010412.1|1624774_1625899_-	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA	NA
WP_000861572.1|1625885_1626368_-	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	44.7	6.2e-22
>prophage 8
NZ_CP029664	Staphylococcus aureus strain AR_0226 chromosome, complete genome	2880689	1787283	1806512	2880689	integrase,terminase,capsid	Staphylococcus_phage(63.16%)	25	1790005:1790021	1803960:1803976
WP_000168845.1|1787283_1788045_-	Fe-S cluster assembly ATPase SufC	NA	A0A1V0SE00	Indivirus	23.3	4.4e-06
WP_001183858.1|1788372_1789224_+	DUF368 domain-containing protein	NA	NA	NA	NA	NA
WP_000752917.1|1789456_1789651_-	CsbD family protein	NA	NA	NA	NA	NA
1790005:1790021	attL	TTATTTAGCAGGAATAA	NA	NA	NA	NA
WP_001035618.1|1790684_1791239_+	DUF4888 domain-containing protein	NA	A0A1W6JQE5	Staphylococcus_phage	76.1	4.8e-71
WP_000801979.1|1791473_1792442_-	Abi family protein	NA	A0A0H4U080	Erysipelothrix_phage	27.3	5.9e-24
WP_086034110.1|1792718_1792874_-|terminase	terminase	terminase	A0A1W6JQF0	Staphylococcus_phage	92.0	3.1e-20
WP_000253084.1|1792870_1793362_-	hypothetical protein	NA	A0A2H4JB26	uncultured_Caudovirales_phage	40.5	7.9e-25
WP_000657538.1|1793545_1794604_-|capsid	phage capsid protein	capsid	A0A0K2CZ99	Paenibacillus_phage	26.6	3.6e-14
WP_000884055.1|1794590_1794797_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001081424.1|1795021_1795366_-	hypothetical protein	NA	A0A1W6JQD5	Staphylococcus_phage	65.2	9.4e-41
WP_000985235.1|1796036_1798409_-	primase	NA	A0A2H4JCU9	uncultured_Caudovirales_phage	39.3	9.8e-137
WP_001103959.1|1798500_1798749_-	DUF1474 family protein	NA	Q4ZE75	Staphylococcus_phage	58.6	1.4e-22
WP_000403840.1|1798749_1799133_-	hypothetical protein	NA	A0A1W6JQI7	Staphylococcus_phage	96.9	4.4e-63
WP_001231376.1|1799134_1799338_-	hypothetical protein	NA	A0A1W6JQF4	Staphylococcus_phage	98.5	2.0e-30
WP_000784892.1|1799304_1799478_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000091732.1|1799489_1799762_-	winged helix-turn-helix domain-containing protein	NA	Q4ZE77	Staphylococcus_phage	88.9	4.8e-40
WP_017431966.1|1799777_1800017_-	helix-turn-helix transcriptional regulator	NA	A0A2H4J9X2	uncultured_Caudovirales_phage	88.6	7.7e-34
WP_001260004.1|1800209_1800542_+	helix-turn-helix transcriptional regulator	NA	A0A1J0MFC1	Staphylococcus_phage	74.5	1.6e-37
WP_000281658.1|1800553_1801012_+	ImmA/IrrE family metallo-endopeptidase	NA	A0A2I6PEK4	Staphylococcus_phage	82.1	4.3e-65
WP_001033321.1|1801028_1801757_+	staphylococcal enterotoxin type Q	NA	A0EX09	Staphylococcus_phage	34.1	1.6e-26
WP_000734020.1|1801780_1802509_+	staphylococcal enterotoxin type K	NA	A0EX09	Staphylococcus_phage	31.8	1.2e-21
WP_000266158.1|1802596_1803817_+|integrase	site-specific integrase	integrase	Q4ZE80	Staphylococcus_phage	47.5	2.9e-100
WP_000732326.1|1803959_1804781_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
1803960:1803976	attR	TTATTTAGCAGGAATAA	NA	NA	NA	NA
WP_000520233.1|1804798_1805494_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_000571218.1|1805486_1806512_-	methionine ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	36.8	1.2e-27
>prophage 9
NZ_CP029664	Staphylococcus aureus strain AR_0226 chromosome, complete genome	2880689	1885164	1899895	2880689		uncultured_Caudovirales_phage(50.0%)	14	NA	NA
WP_000616842.1|1885164_1885926_-	ABC transporter ATP-binding protein	NA	Q9EMR9	Amsacta_moorei_entomopoxvirus	31.6	8.5e-18
WP_001245577.1|1885922_1886879_-	iron chelate uptake ABC transporter family permease subunit	NA	A0A2H4J116	uncultured_Caudovirales_phage	57.8	1.2e-05
WP_000876318.1|1886865_1887837_-	ABC transporter permease	NA	A0A2H4IY97	uncultured_Caudovirales_phage	78.9	4.3e-139
WP_000499195.1|1887875_1888031_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000562498.1|1888544_1889516_-	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	A0A2H4J4P3	uncultured_Caudovirales_phage	91.3	4.2e-171
WP_000855505.1|1889633_1891739_-	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A0A2H4J2N6	uncultured_Caudovirales_phage	91.7	0.0e+00
WP_000692521.1|1891701_1892100_-	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	A0A2H4J545	uncultured_Caudovirales_phage	72.0	1.2e-52
WP_001068497.1|1892900_1893767_+	DMT family transporter	NA	NA	NA	NA	NA
WP_000930014.1|1893786_1894287_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	E7DN65	Pneumococcus_phage	71.5	5.9e-52
WP_000193752.1|1894627_1896133_+	peptide MFS transporter	NA	A0A0P0IY73	Acinetobacter_phage	32.2	2.0e-58
WP_001790641.1|1896210_1896312_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000429014.1|1896402_1897320_+	diacylglycerol kinase family lipid kinase	NA	A0A1V0SBJ0	Catovirus	22.0	3.7e-07
WP_000197273.1|1897943_1898486_-	5'-3'-deoxyribonucleotidase	NA	NA	NA	NA	NA
WP_000663030.1|1898836_1899895_-	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	26.7	7.9e-22
>prophage 10
NZ_CP029664	Staphylococcus aureus strain AR_0226 chromosome, complete genome	2880689	1911867	1919687	2880689		Pandoravirus(16.67%)	10	NA	NA
WP_001217785.1|1911867_1913019_-	anthranilate synthase component I family protein	NA	A0A0B5J984	Pandoravirus	35.7	1.6e-23
WP_000604514.1|1913002_1913596_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	42.9	4.4e-38
WP_000446724.1|1913946_1914615_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	57.5	9.6e-66
WP_000941336.1|1914616_1915036_+	6-carboxytetrahydropterin synthase QueD	NA	S4U060	uncultured_phage	28.7	6.3e-07
WP_001062972.1|1915039_1915753_+	7-carboxy-7-deazaguanine synthase QueE	NA	A0A1U9WRB6	Streptococcus_virus	43.5	6.5e-52
WP_000637687.1|1915851_1916436_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001093553.1|1916715_1917156_+	DM13 domain-containing protein	NA	NA	NA	NA	NA
WP_001037807.1|1917497_1917971_+	DoxX family protein	NA	NA	NA	NA	NA
WP_000149344.1|1917945_1918632_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_000244412.1|1918631_1919687_+	HAMP domain-containing histidine kinase	NA	A0A1V0SGX0	Hokovirus	30.0	2.1e-14
>prophage 1
NZ_CP029665	Staphylococcus aureus strain AR_0226 plasmid unnamed1, complete sequence	26984	19250	26875	26984	transposase	Staphylococcus_phage(50.0%)	9	NA	NA
WP_000690637.1|19250_19829_+	recombinase family protein	NA	A0A0A7NPV4	Enterobacteria_phage	51.7	4.9e-42
WP_001037130.1|20051_20237_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001105991.1|20498_21173_+|transposase	IS6-like element IS257 family transposase	transposase	A0A0N9SKD3	Staphylococcus_phage	99.6	6.8e-128
WP_001096887.1|22188_22983_-	aminoglycoside O-phosphotransferase APH(3')-IIIa	NA	E4ZFP6	Streptococcus_phage	100.0	2.3e-154
WP_031923810.1|23075_23522_-	GNAT family N-acetyltransferase	NA	A0A1B0RXL7	Streptococcus_phage	82.2	2.3e-79
WP_001105956.1|24294_24969_-|transposase	IS6 family transposase	transposase	A0A0N9SKD3	Staphylococcus_phage	98.7	2.6e-127
WP_000505741.1|24998_25202_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000369394.1|25215_25953_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_000793446.1|25945_26875_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	42.2	1.0e-41
