assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_003199005.1_ASM319900v1	NZ_CP029686	Lacticaseibacillus paracasei strain Lpc10 chromosome, complete genome	1	1222836-1222980	1	CRISPRCasFinder	no		csa3,DEDDh,cas3,WYL,DinG,cas9,cas1,cas2,csn2,RT	Orphan	TTTCGAAACGCGCAAACAGGCGCAGAAACCTGCTCATAAGGACCCC	46	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,cas3,WYL,DinG,cas9,cas1,cas2,csn2,RT	NA|111aa|up_4|NZ_CP029686.1_1218775_1219108_-,NA|115aa|down_7|NZ_CP029686.1_1231409_1231754_-	NA|105aa|up_9|NZ_CP029686.1_1208362_1208677_-	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|247aa|up_8|NZ_CP029686.1_1214042_1214783_+	pfam13649, Methyltransf_25, Methyltransferase domain	NA|516aa|up_7|NZ_CP029686.1_1214942_1216490_-	COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]	NA|313aa|up_6|NZ_CP029686.1_1216869_1217808_+	pfam03747, ADP_ribosyl_GH, ADP-ribosylglycohydrolase	NA|200aa|up_5|NZ_CP029686.1_1217885_1218485_+	TIGR02227, Inactive_signal_peptidase_IA	NA|111aa|up_4|NZ_CP029686.1_1218775_1219108_-	NA	NA|248aa|up_3|NZ_CP029686.1_1219216_1219960_-	COG5523, COG5523, Predicted integral membrane protein [Function unknown]	NA|261aa|up_2|NZ_CP029686.1_1219978_1220761_-	pfam00535, Glycos_transf_2, Glycosyl transferase family 2	NA|253aa|up_1|NZ_CP029686.1_1220845_1221604_-	COG1349, GlpR, Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism]	NA|229aa|up_0|NZ_CP029686.1_1222048_1222735_+	cd14667, 3D_containing_proteins, Non-mltA associated 3D domain containing proteins, named for 3 conserved aspartate residues	NA|460aa|down_0|NZ_CP029686.1_1223476_1224856_+	pfam05525, Branch_AA_trans, Branched-chain amino acid transport protein	NA|365aa|down_1|NZ_CP029686.1_1225006_1226101_-	PRK09379, PRK09379, LytR family transcriptional regulator	NA|600aa|down_2|NZ_CP029686.1_1226229_1228029_+	cd09608, M3B_PepF, Peptidase family M3B, oligopeptidase F (PepF)	NA|294aa|down_3|NZ_CP029686.1_1228025_1228907_+	COG2084, MmsB, 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]	NA|284aa|down_4|NZ_CP029686.1_1228903_1229755_+	COG0622, COG0622, Predicted phosphoesterase [General function prediction only]	NA|266aa|down_5|NZ_CP029686.1_1229822_1230620_-	COG1108, ZnuB, ABC-type Mn2+/Zn2+ transport systems, permease components [Inorganic ion transport and metabolism]	NA|240aa|down_6|NZ_CP029686.1_1230616_1231336_-	cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters	NA|115aa|down_7|NZ_CP029686.1_1231409_1231754_-	NA	NA|451aa|down_8|NZ_CP029686.1_1232000_1233353_-	TIGR00791, Gluconate_permease, gluconate transporter	NA|523aa|down_9|NZ_CP029686.1_1233537_1235106_-	TIGR01314, gntK_FGGY, gluconate kinase, FGGY type
GCF_003199005.1_ASM319900v1	NZ_CP029686	Lacticaseibacillus paracasei strain Lpc10 chromosome, complete genome	2	2238194-2239681	1,2,1,2,3	PILER-CR,CRISPRCasFinder,CRT,PILER-CR,PILER-CR	no	cas9,cas1,cas2,csn2	csa3,DEDDh,cas3,WYL,DinG,cas9,cas1,cas2,csn2,RT	Type II-B,Type II-C,Type II-A	GTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGC,GTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGC,GTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGC,GTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGC,GTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGC	36,36,36,36,36	0	0	NA	NA	NA:NA:NA:NA:NA	19,22,22,19,19	22	TypeII-B,TypeII-C,TypeII-A	csa3,DEDDh,cas3,WYL,DinG,cas9,cas1,cas2,csn2,RT	NA|108aa|up_7|NZ_CP029686.1_2228802_2229126_-,NA|389aa|up_5|NZ_CP029686.1_2229917_2231084_+,NA|265aa|up_4|NZ_CP029686.1_2231084_2231879_+,NA|367aa|down_0|NZ_CP029686.1_2240287_2241388_+	NA|581aa|up_9|NZ_CP029686.1_2225280_2227023_+	COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]	NA|576aa|up_8|NZ_CP029686.1_2227003_2228731_+	COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]	NA|108aa|up_7|NZ_CP029686.1_2228802_2229126_-	NA	NA|125aa|up_6|NZ_CP029686.1_2229319_2229694_-	pfam06486, DUF1093, Protein of unknown function (DUF1093)	NA|389aa|up_5|NZ_CP029686.1_2229917_2231084_+	NA	NA|265aa|up_4|NZ_CP029686.1_2231084_2231879_+	NA	cas9|1363aa|up_3|NZ_CP029686.1_2232027_2236116_+	pfam16592, Cas9_REC, REC lobe of CRISPR-associated endonuclease Cas9	cas1|302aa|up_2|NZ_CP029686.1_2236306_2237212_+	TIGR03639, cas1_NMENI, CRISPR-associated endonuclease Cas1, subtype II/NMENI	cas2|102aa|up_1|NZ_CP029686.1_2237189_2237495_+	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	csn2|226aa|up_0|NZ_CP029686.1_2237491_2238169_+	cd12218, Csn2, CRISPR/Cas system-associated protein Csn2	NA|367aa|down_0|NZ_CP029686.1_2240287_2241388_+	NA	NA|142aa|down_1|NZ_CP029686.1_2241538_2241964_+	COG5341, COG5341, Uncharacterized protein conserved in bacteria [Function unknown]	NA|564aa|down_2|NZ_CP029686.1_2242160_2243852_+	COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]	NA|544aa|down_3|NZ_CP029686.1_2243848_2245480_+	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|286aa|down_4|NZ_CP029686.1_2245617_2246475_+	PRK09772, PRK09772, transcriptional antiterminator BglG; Provisional	NA|613aa|down_5|NZ_CP029686.1_2246926_2248765_+	TIGR01995, beta-glucosides_PTS_EIIBCA, PTS system, beta-glucoside-specific IIABC component	NA|483aa|down_6|NZ_CP029686.1_2248936_2250385_+	PRK09593, arb, 6-phospho-beta-glucosidase; Reviewed	NA|189aa|down_7|NZ_CP029686.1_2250511_2251078_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|473aa|down_8|NZ_CP029686.1_2251244_2252663_+	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|444aa|down_9|NZ_CP029686.1_2252868_2254200_+	COG1249, Lpd, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
GCF_003199005.1_ASM319900v1	NZ_CP029686	Lacticaseibacillus paracasei strain Lpc10 chromosome, complete genome	3	2656652-2656772	3	CRISPRCasFinder	no		csa3,DEDDh,cas3,WYL,DinG,cas9,cas1,cas2,csn2,RT	Orphan	GGTTTCTGGGGTGGCGAACGCGTTTAGAAACCG	33	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,cas3,WYL,DinG,cas9,cas1,cas2,csn2,RT	NA|146aa|up_4|NZ_CP029686.1_2651656_2652094_+,NA|100aa|down_5|NZ_CP029686.1_2661348_2661648_-	NA|488aa|up_9|NZ_CP029686.1_2643684_2645148_+	PRK09243, PRK09243, nicotinate phosphoribosyltransferase; Validated	NA|398aa|up_8|NZ_CP029686.1_2645151_2646345_+	pfam00144, Beta-lactamase, Beta-lactamase	NA|276aa|up_7|NZ_CP029686.1_2646347_2647175_+	PRK00768, nadE, ammonia-dependent NAD(+) synthetase	NA|386aa|up_6|NZ_CP029686.1_2647394_2648552_+	pfam00144, Beta-lactamase, Beta-lactamase	NA|887aa|up_5|NZ_CP029686.1_2648859_2651520_+	cd02089, P-type_ATPase_Ca_prok, prokaryotic P-type Ca(2+)-ATPase similar to Synechococcus elongatus sp	NA|146aa|up_4|NZ_CP029686.1_2651656_2652094_+	NA	NA|300aa|up_3|NZ_CP029686.1_2653570_2654470_+	COG4120, COG4120, ABC-type uncharacterized transport system, permease component [General function prediction only]	NA|251aa|up_2|NZ_CP029686.1_2654462_2655215_+	COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only]	NA|151aa|up_1|NZ_CP029686.1_2655356_2655809_+	PRK04351, PRK04351, SprT family protein	NA|155aa|up_0|NZ_CP029686.1_2655801_2656266_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|202aa|down_0|NZ_CP029686.1_2656992_2657598_+	COG4684, COG4684, Predicted membrane protein [Function unknown]	NA|380aa|down_1|NZ_CP029686.1_2657676_2658816_+	cd08659, M20_ArgE_DapE-like, Peptidase M20 acetylornithine deacetylase/succinyl-diaminopimelate desuccinylase (ArgE/DapE)-like	NA|273aa|down_2|NZ_CP029686.1_2658875_2659694_-	cd09019, galactose_mutarotase_like, galactose mutarotase_like	NA|188aa|down_3|NZ_CP029686.1_2659806_2660370_+	pfam04471, Mrr_cat, Restriction endonuclease	NA|277aa|down_4|NZ_CP029686.1_2660517_2661348_+	COG1082, IolE, Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism]	NA|100aa|down_5|NZ_CP029686.1_2661348_2661648_-	NA	NA|394aa|down_6|NZ_CP029686.1_2661992_2663174_+	PRK05790, PRK05790, putative acyltransferase; Provisional	NA|427aa|down_7|NZ_CP029686.1_2663185_2664466_+	cd00644, HMG-CoA_reductase_classII, Class II hydroxymethylglutaryl-coenzyme A (HMG-CoA) reductase (HMGR)	NA|389aa|down_8|NZ_CP029686.1_2664449_2665616_+	TIGR01835, 3-hydroxy-3-methylglutaryl_CoA_synthase, 3-hydroxy-3-methylglutaryl CoA synthase, prokaryotic clade	NA|585aa|down_9|NZ_CP029686.1_2665939_2667694_+	TIGR02720, Pyruvate_oxidase, pyruvate oxidase
