assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_003194005.1_ASM319400v1	NZ_CP029655	Staphylococcus aureus strain AR_0469 chromosome, complete genome	1	141627-141729	1	CRISPRCasFinder	no		cas3,csa3,WYL,RT,DEDDh,DinG	Orphan	CAAATTTAATACTCAATTCATATA	24	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,WYL,RT,DEDDh,DinG	NA|179aa|up_7|NZ_CP029655.1_133245_133782_+,NA|221aa|up_1|NZ_CP029655.1_139873_140536_+,NA|33aa|down_0|NZ_CP029655.1_142404_142503_-,NA|128aa|down_6|NZ_CP029655.1_148750_149134_+,NA|70aa|down_8|NZ_CP029655.1_149958_150168_+	NA|91aa|up_9|NZ_CP029655.1_131478_131751_+	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|235aa|up_8|NZ_CP029655.1_132149_132854_+	pfam02452, PemK_toxin, PemK-like, MazF-like toxin of type II toxin-antitoxin system	NA|179aa|up_7|NZ_CP029655.1_133245_133782_+	NA	NA|514aa|up_6|NZ_CP029655.1_133894_135436_-	PRK00074, guaA, GMP synthase; Reviewed	NA|489aa|up_5|NZ_CP029655.1_135460_136927_-	PRK05567, PRK05567, inosine 5'-monophosphate dehydrogenase; Reviewed	NA|423aa|up_4|NZ_CP029655.1_136964_138233_-	TIGR03173, pbuX, xanthine permease	NA|193aa|up_3|NZ_CP029655.1_138232_138811_-	PRK09219, PRK09219, xanthine phosphoribosyltransferase; Validated	NA|136aa|up_2|NZ_CP029655.1_139323_139731_+	pfam11181, YflT, Heat induced stress protein YflT	NA|221aa|up_1|NZ_CP029655.1_139873_140536_+	NA	NA|319aa|up_0|NZ_CP029655.1_140653_141610_+	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type	NA|33aa|down_0|NZ_CP029655.1_142404_142503_-	NA	NA|463aa|down_1|NZ_CP029655.1_142587_143976_+	COG1823, COG1823, Predicted Na+/dicarboxylate symporter [General function prediction only]	NA|252aa|down_2|NZ_CP029655.1_144055_144811_-	cd02146, NfsA-like, nitroreductase similar to Escherichia coli NfsA	NA|190aa|down_3|NZ_CP029655.1_145302_145872_+	TIGR03137, AhpC, peroxiredoxin	NA|508aa|down_4|NZ_CP029655.1_145887_147411_+	PRK15317, PRK15317, alkyl hydroperoxide reductase subunit F; Provisional	NA|209aa|down_5|NZ_CP029655.1_147854_148481_+	NF033193, lipo_NDxxF, NDxxF motif lipoprotein	NA|128aa|down_6|NZ_CP029655.1_148750_149134_+	NA	NA|194aa|down_7|NZ_CP029655.1_149199_149781_-	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]	NA|70aa|down_8|NZ_CP029655.1_149958_150168_+	NA	NA|84aa|down_9|NZ_CP029655.1_150206_150458_-	COG2261, COG2261, Predicted membrane protein [Function unknown]
GCF_003194005.1_ASM319400v1	NZ_CP029655	Staphylococcus aureus strain AR_0469 chromosome, complete genome	2	842112-842245	1	PILER-CR	no		cas3,csa3,WYL,RT,DEDDh,DinG	Orphan	TATTGAAGAAGATACAA	17	2	2	842129-842174|842192-842228	NZ_CP029655.1_838479-838524|NZ_CP029655.1_838542-838578	NA	2	2	Orphan	cas3,csa3,WYL,RT,DEDDh,DinG	NA|67aa|up_1|NZ_CP029655.1_835655_835856_+,NA|78aa|down_5|NZ_CP029655.1_850178_850412_+,NA|103aa|down_6|NZ_CP029655.1_850519_850828_-,NA|89aa|down_7|NZ_CP029655.1_850971_851238_-	NA|426aa|up_9|NZ_CP029655.1_825652_826930_+	cd17319, MFS_ExuT_GudP_like, Hexuronate transporter, Glucarate transporter, and similar transporters of the Major Facilitator Superfamily	NA|608aa|up_8|NZ_CP029655.1_827406_829230_+	COG1289, COG1289, Predicted membrane protein [Function unknown]	NA|139aa|up_7|NZ_CP029655.1_829368_829785_+	COG4876, COG4876, Uncharacterized protein conserved in bacteria [Function unknown]	NA|231aa|up_6|NZ_CP029655.1_830015_830708_+	COG2357, COG2357, PpGpp synthetase catalytic domain [General function prediction only]	NA|255aa|up_5|NZ_CP029655.1_830872_831637_+	cd01106, HTH_TipAL-Mta, Helix-Turn-Helix DNA binding domain of the transcription regulators TipAL, Mta, and SkgA	NA|227aa|up_4|NZ_CP029655.1_831789_832470_+	COG1802, GntR, Transcriptional regulators [Transcription]	NA|518aa|up_3|NZ_CP029655.1_832493_834047_+	TIGR01314, gntK_FGGY, gluconate kinase, FGGY type	NA|453aa|up_2|NZ_CP029655.1_834163_835522_+	TIGR00791, Gluconate_permease, gluconate transporter	NA|67aa|up_1|NZ_CP029655.1_835655_835856_+	NA	NA|1039aa|up_0|NZ_CP029655.1_835990_839107_+	pfam10425, SdrG_C_C, C-terminus of bacterial fibrinogen-binding adhesin	NA|289aa|down_0|NZ_CP029655.1_842853_843720_+	COG1210, GalU, UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]	NA|248aa|down_1|NZ_CP029655.1_843930_844674_-	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|119aa|down_2|NZ_CP029655.1_844997_845354_+	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|988aa|down_3|NZ_CP029655.1_845658_848622_+	pfam18483, Bact_lectin, Bacterial lectin	NA|359aa|down_4|NZ_CP029655.1_849005_850082_+	cd06173, MFS_MefA_like, Macrolide efflux protein A and similar proteins of the Major Facilitator Superfamily of transporters	NA|78aa|down_5|NZ_CP029655.1_850178_850412_+	NA	NA|103aa|down_6|NZ_CP029655.1_850519_850828_-	NA	NA|89aa|down_7|NZ_CP029655.1_850971_851238_-	NA	NA|603aa|down_8|NZ_CP029655.1_851521_853330_-	cd05799, PGM2, This CD includes PGM2 (phosphoglucomutase 2) and PGM2L1 (phosphoglucomutase 2-like 1)	NA|131aa|down_9|NZ_CP029655.1_853461_853854_+	cd03425, MutT_pyrophosphohydrolase, The MutT pyrophosphohydrolase is a prototypical Nudix hydrolase that catalyzes the hydrolysis of nucleoside and deoxynucleoside triphosphates (NTPs and dNTPs) by substitution at a beta-phosphorus to yield a nucleotide monophosphate (NMP) and inorganic pyrophosphate (PPi)
GCF_003194005.1_ASM319400v1	NZ_CP029655	Staphylococcus aureus strain AR_0469 chromosome, complete genome	3	917275-917353	2	CRISPRCasFinder	no		cas3,csa3,WYL,RT,DEDDh,DinG	Orphan	TGCAAGTTGGCGGGGCCCCAACA	23	1	5	917298-917330|917298-917330|917298-917330|917298-917330|917298-917330	NZ_CP029655.1_2553974-2554006|NZ_CP029655.1_2590193-2590225|NZ_CP029655.1_1307585-1307553|NZ_CP029655.1_2590249-2590281|NZ_CP029655.1_2590305-2590337	NA	1	1	Orphan	cas3,csa3,WYL,RT,DEDDh,DinG	NA|220aa|up_3|NZ_CP029655.1_914199_914859_-,NA|36aa|up_0|NZ_CP029655.1_916848_916956_+,NA	NA|693aa|up_9|NZ_CP029655.1_906661_908740_-	COG0025, NhaP, NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]	NA|470aa|up_8|NZ_CP029655.1_908877_910287_-	COG1113, AnsP, Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]	NA|269aa|up_7|NZ_CP029655.1_910572_911379_+	TIGR03729, acc_ester, putative phosphoesterase	NA|219aa|up_6|NZ_CP029655.1_911441_912098_-	COG4990, COG4990, Uncharacterized protein conserved in bacteria [Function unknown]	NA|158aa|up_5|NZ_CP029655.1_912210_912684_+	COG3708, COG3708, Uncharacterized protein conserved in bacteria [Function unknown]	NA|404aa|up_4|NZ_CP029655.1_912806_914018_-	cd17320, MFS_MdfA_MDR_like, Multidrug transporter MdfA and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily	NA|220aa|up_3|NZ_CP029655.1_914199_914859_-	NA	NA|381aa|up_2|NZ_CP029655.1_914918_916061_-	TIGR00045, Glycerate_kinase, glycerate kinase	NA|129aa|up_1|NZ_CP029655.1_916328_916715_+	COG2246, COG2246, Predicted membrane protein [Function unknown]	NA|36aa|up_0|NZ_CP029655.1_916848_916956_+	NA	NA|588aa|down_0|NZ_CP029655.1_917658_919422_+	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|578aa|down_1|NZ_CP029655.1_919446_921180_+	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|229aa|down_2|NZ_CP029655.1_921632_922319_+	COG0132, BioD, Dethiobiotin synthetase [Coenzyme metabolism]	NA|453aa|down_3|NZ_CP029655.1_922296_923655_+	TIGR00508, hypothetical_protein_DESPIG_00326, adenosylmethionine-8-amino-7-oxononanoate transaminase	NA|336aa|down_4|NZ_CP029655.1_923656_924664_+	PRK06256, PRK06256, biotin synthase; Validated	NA|372aa|down_5|NZ_CP029655.1_924641_925757_+	COG0156, BioF, 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism]	NA|231aa|down_6|NZ_CP029655.1_925767_926460_+	COG1424, BioW, Pimeloyl-CoA synthetase [Coenzyme metabolism]	NA|156aa|down_7|NZ_CP029655.1_926470_926938_+	pfam06177, QueT, QueT transporter	NA|326aa|down_8|NZ_CP029655.1_926989_927967_-	TIGR01002, synergohymenotropic_toxin, beta-channel forming cytolysin	NA|316aa|down_9|NZ_CP029655.1_927968_928916_-	pfam07968, Leukocidin, Leukocidin/Hemolysin toxin family
GCF_003194005.1_ASM319400v1	NZ_CP029655	Staphylococcus aureus strain AR_0469 chromosome, complete genome	4	1082061-1082141	3	CRISPRCasFinder	no		cas3,csa3,WYL,RT,DEDDh,DinG	Orphan	CAAGTTGGCGGGGCCCCAACACAGA	25	1	15	1082086-1082116|1082086-1082116|1082086-1082116|1082086-1082116|1082086-1082116|1082086-1082116|1082086-1082116|1082086-1082116|1082086-1082116|1082086-1082116|1082086-1082116|1082086-1082116|1082086-1082116|1082086-1082116|1082086-1082116	NZ_CP029655.1_2590253-2590283|NZ_CP029655.1_2590309-2590339|NZ_CP029655.1_180465-180435|NZ_CP029655.1_475160-475190|NZ_CP029655.1_1092887-1092917|NZ_CP029655.1_1391161-1391191|NZ_CP029655.1_1750676-1750646|NZ_CP029655.1_1946760-1946790|NZ_CP029655.1_1946876-1946906|NZ_CP029655.1_2035339-2035309|NZ_CP029655.1_2241439-2241409|NZ_CP029655.1_2343933-2343963|NZ_CP029655.1_2553978-2554008|NZ_CP029655.1_2590197-2590227|NZ_CP029655.1_2770742-2770712	NA	1	1	Orphan	cas3,csa3,WYL,RT,DEDDh,DinG	NA,NA|62aa|down_0|NZ_CP029655.1_1082182_1082368_-,NA|84aa|down_5|NZ_CP029655.1_1085507_1085759_-,NA|106aa|down_8|NZ_CP029655.1_1090880_1091198_-,NA|55aa|down_9|NZ_CP029655.1_1091442_1091607_-	NA|202aa|up_9|NZ_CP029655.1_1074953_1075559_+	COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]	NA|335aa|up_8|NZ_CP029655.1_1075728_1076733_+	PRK07688, PRK07688, thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated	NA|169aa|up_7|NZ_CP029655.1_1076763_1077270_+	COG0521, MoaB, Molybdopterin biosynthesis enzymes [Coenzyme metabolism]	NA|165aa|up_6|NZ_CP029655.1_1077271_1077766_-	PRK09364, moaC, cyclic pyranopterin monophosphate synthase MoaC	NA|420aa|up_5|NZ_CP029655.1_1077828_1079088_+	cd00887, MoeA, MoeA family	NA|162aa|up_4|NZ_CP029655.1_1079084_1079570_+	COG1763, MobB, Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]	NA|149aa|up_3|NZ_CP029655.1_1079583_1080030_+	COG0314, MoaE, Molybdopterin converting factor, large subunit [Coenzyme metabolism]	NA|78aa|up_2|NZ_CP029655.1_1080035_1080269_+	cd00754, Ubl_MoaD, ubiquitin-like (Ubl) domain found in molybdenum cofactor biosynthesis protein D (MoaD) and similar proteins	NA|200aa|up_1|NZ_CP029655.1_1080275_1080875_+	PRK00317, mobA, molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed	NA|341aa|up_0|NZ_CP029655.1_1080894_1081917_+	TIGR02666, Cyclic_pyranopterin_monophosphate_synthase, molybdenum cofactor biosynthesis protein A, bacterial	NA|62aa|down_0|NZ_CP029655.1_1082182_1082368_-	NA	NA|117aa|down_1|NZ_CP029655.1_1082493_1082844_+	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|404aa|down_2|NZ_CP029655.1_1082945_1084157_-	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily	NA|147aa|down_3|NZ_CP029655.1_1084149_1084590_-	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|255aa|down_4|NZ_CP029655.1_1084751_1085516_+	pfam13468, Glyoxalase_3, Glyoxalase-like domain	NA|84aa|down_5|NZ_CP029655.1_1085507_1085759_-	NA	NA|422aa|down_6|NZ_CP029655.1_1086147_1087413_+	COG2348, COG2348, Peptidoglycan interpeptide bridge formation enzyme [Cell wall/membrane/envelope biogenesis]	NA|1056aa|down_7|NZ_CP029655.1_1087529_1090697_+	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms]	NA|106aa|down_8|NZ_CP029655.1_1090880_1091198_-	NA	NA|55aa|down_9|NZ_CP029655.1_1091442_1091607_-	NA
GCF_003194005.1_ASM319400v1	NZ_CP029655	Staphylococcus aureus strain AR_0469 chromosome, complete genome	5	1190095-1190180	4	CRISPRCasFinder	no	csa3	cas3,csa3,WYL,RT,DEDDh,DinG	Type I-A	ACTAATGATACGCAAAAATCAGTTGG	26	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,WYL,RT,DEDDh,DinG	NA,NA|53aa|down_7|NZ_CP029655.1_1201142_1201301_-,NA|35aa|down_9|NZ_CP029655.1_1201980_1202085_+	NA|396aa|up_9|NZ_CP029655.1_1165339_1166527_+	cd04193, UDPGlcNAc_PPase, UDPGlcNAc pyrophosphorylase catalayzes the synthesis of UDPGlcNAc	NA|228aa|up_8|NZ_CP029655.1_1166545_1167229_+	COG1272, COG1272, Predicted membrane protein, hemolysin III homolog [General function prediction only]	NA|448aa|up_7|NZ_CP029655.1_1167405_1168749_+	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|158aa|up_6|NZ_CP029655.1_1168847_1169321_+	pfam17080, SepA, Multidrug Resistance efflux pump	NA|481aa|up_5|NZ_CP029655.1_1169643_1171086_+	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|355aa|up_4|NZ_CP029655.1_1171233_1172298_+	pfam10609, ParA, NUBPL iron-transfer P-loop NTPase	NA|303aa|up_3|NZ_CP029655.1_1178538_1179447_+	cd09989, Arginase, Arginase family	NA|270aa|up_2|NZ_CP029655.1_1179635_1180445_+	COG1624, COG1624, Uncharacterized conserved protein [Function unknown]	NA|311aa|up_1|NZ_CP029655.1_1180446_1181379_+	COG4856, COG4856, Uncharacterized protein conserved in bacteria [Function unknown]	NA|452aa|up_0|NZ_CP029655.1_1181405_1182761_+	PRK14316, glmM, phosphoglucosamine mutase; Provisional	NA|369aa|down_0|NZ_CP029655.1_1190802_1191909_-	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional	NA|145aa|down_1|NZ_CP029655.1_1191908_1192343_-	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]	NA|711aa|down_2|NZ_CP029655.1_1192354_1194487_-	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|513aa|down_3|NZ_CP029655.1_1194521_1196060_-	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]	NA|602aa|down_4|NZ_CP029655.1_1196740_1198546_+	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|261aa|down_5|NZ_CP029655.1_1198777_1199560_+	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|286aa|down_6|NZ_CP029655.1_1199627_1200485_+	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|53aa|down_7|NZ_CP029655.1_1201142_1201301_-	NA	NA|57aa|down_8|NZ_CP029655.1_1201293_1201464_-	COG4584, COG4584, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|35aa|down_9|NZ_CP029655.1_1201980_1202085_+	NA
GCF_003194005.1_ASM319400v1	NZ_CP029655	Staphylococcus aureus strain AR_0469 chromosome, complete genome	6	1202420-1202501	5	CRISPRCasFinder	no	csa3	cas3,csa3,WYL,RT,DEDDh,DinG	Type I-A	AAGAAGCCCCTAACAACTAAAGTTG	25	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,WYL,RT,DEDDh,DinG	NA|53aa|up_2|NZ_CP029655.1_1201142_1201301_-,NA|35aa|up_0|NZ_CP029655.1_1201980_1202085_+,NA|364aa|down_0|NZ_CP029655.1_1202517_1203609_-,NA|77aa|down_5|NZ_CP029655.1_1207395_1207626_+	NA|369aa|up_9|NZ_CP029655.1_1190802_1191909_-	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional	NA|145aa|up_8|NZ_CP029655.1_1191908_1192343_-	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]	NA|711aa|up_7|NZ_CP029655.1_1192354_1194487_-	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|513aa|up_6|NZ_CP029655.1_1194521_1196060_-	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]	NA|602aa|up_5|NZ_CP029655.1_1196740_1198546_+	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|261aa|up_4|NZ_CP029655.1_1198777_1199560_+	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|286aa|up_3|NZ_CP029655.1_1199627_1200485_+	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|53aa|up_2|NZ_CP029655.1_1201142_1201301_-	NA	NA|57aa|up_1|NZ_CP029655.1_1201293_1201464_-	COG4584, COG4584, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|35aa|up_0|NZ_CP029655.1_1201980_1202085_+	NA	NA|364aa|down_0|NZ_CP029655.1_1202517_1203609_-	NA	NA|326aa|down_1|NZ_CP029655.1_1203874_1204852_-	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	csa3|107aa|down_2|NZ_CP029655.1_1204853_1205174_-	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|222aa|down_3|NZ_CP029655.1_1205325_1205991_+	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5	NA|313aa|down_4|NZ_CP029655.1_1206426_1207365_+	COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism]	NA|77aa|down_5|NZ_CP029655.1_1207395_1207626_+	NA	NA|458aa|down_6|NZ_CP029655.1_1208297_1209671_+	pfam01878, EVE, EVE domain	NA|138aa|down_7|NZ_CP029655.1_1210127_1210541_+	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function    prediction only]	NA|148aa|down_8|NZ_CP029655.1_1210740_1211184_+	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism]	NA|237aa|down_9|NZ_CP029655.1_1211304_1212015_-	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase
GCF_003194005.1_ASM319400v1	NZ_CP029655	Staphylococcus aureus strain AR_0469 chromosome, complete genome	7	1331497-1331578	6	CRISPRCasFinder	no		cas3,csa3,WYL,RT,DEDDh,DinG	Orphan	ACAATGCAAGTTGGGGTGGGGGCC	24	1	5	1331521-1331554|1331521-1331554|1331521-1331554|1331521-1331554|1331521-1331554	NZ_CP029655.1_2247040-2247007|NZ_CP029655.1_2603050-2603083|NZ_CP029655.1_1638629-1638596|NZ_CP029655.1_643943-643976|NZ_CP029655.1_2030891-2030924	NA	1	1	Orphan	cas3,csa3,WYL,RT,DEDDh,DinG	NA,NA|33aa|down_7|NZ_CP029655.1_1340668_1340767_+,NA|59aa|down_8|NZ_CP029655.1_1341009_1341186_+	NA|48aa|up_9|NZ_CP029655.1_1321755_1321899_-	smart00794, AgrD, Staphylococcal AgrD protein	NA|188aa|up_8|NZ_CP029655.1_1321901_1322465_-	COG4512, AgrB, Membrane protein putatively involved in post-translational modification of the autoinducing quorum-sensing peptide [Posttranslational modification, protein turnover, chaperones / Signal transduction mechanisms / Transcription]	NA|45aa|up_7|NZ_CP029655.1_1322700_1322835_+	PRK14752, PRK14752, delta-lysin family phenol-soluble modulin	NA|262aa|up_6|NZ_CP029655.1_1323434_1324220_-	cd07583, nitrilase_5, Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases)	NA|209aa|up_5|NZ_CP029655.1_1324584_1325211_-	COG3560, FMR2, Predicted oxidoreductase related to nitroreductase [General function prediction only]	NA|394aa|up_4|NZ_CP029655.1_1325407_1326589_+	PRK10819, PRK10819, transport protein TonB; Provisional	NA|248aa|up_3|NZ_CP029655.1_1326613_1327357_-	pfam02517, Abi, CAAX protease self-immunity	NA|95aa|up_2|NZ_CP029655.1_1327531_1327816_+	PRK00364, groES, co-chaperonin GroES; Reviewed	NA|539aa|up_1|NZ_CP029655.1_1327891_1329508_+	PRK00013, groEL, chaperonin GroEL; Reviewed	NA|436aa|up_0|NZ_CP029655.1_1330047_1331355_-	TIGR00933, Trk_system_potassium_uptake_protein_trkH	NA|408aa|down_0|NZ_CP029655.1_1331798_1333022_-	PRK08588, PRK08588, succinyl-diaminopimelate desuccinylase; Reviewed	NA|352aa|down_1|NZ_CP029655.1_1333457_1334513_+	pfam07968, Leukocidin, Leukocidin/Hemolysin toxin family	NA|339aa|down_2|NZ_CP029655.1_1334534_1335551_+	pfam07968, Leukocidin, Leukocidin/Hemolysin toxin family	NA|331aa|down_3|NZ_CP029655.1_1335788_1336781_-	TIGR03395, Sphingomyelinase_C, sphingomyelin phosphodiesterase	NA|477aa|down_4|NZ_CP029655.1_1337169_1338600_+	pfam03642, MAP, MAP domain	NA|97aa|down_5|NZ_CP029655.1_1338614_1338905_+	pfam03642, MAP, MAP domain	NA|429aa|down_6|NZ_CP029655.1_1339183_1340470_-	PRK08637, PRK08637, hypothetical protein; Provisional	NA|33aa|down_7|NZ_CP029655.1_1340668_1340767_+	NA	NA|59aa|down_8|NZ_CP029655.1_1341009_1341186_+	NA	NA|127aa|down_9|NZ_CP029655.1_1341443_1341824_+	COG1725, COG1725, Predicted transcriptional regulators [Transcription]
GCF_003194005.1_ASM319400v1	NZ_CP029655	Staphylococcus aureus strain AR_0469 chromosome, complete genome	8	1765256-1765340	7	CRISPRCasFinder	no		cas3,csa3,WYL,RT,DEDDh,DinG	Orphan	TTCTACAGGCAATGCAAGTTGGGGTG	26	1	2	1765282-1765314|1765282-1765314	NZ_CP029655.1_2035297-2035265|NZ_CP029655.1_2597492-2597524	NA	1	1	Orphan	cas3,csa3,WYL,RT,DEDDh,DinG	NA,NA	NA|190aa|up_9|NZ_CP029655.1_1755885_1756455_+	TIGR00482, Probable_nicotinate-nucleotide_adenylyltransferase, nicotinate (nicotinamide) nucleotide adenylyltransferase	NA|195aa|up_8|NZ_CP029655.1_1756444_1757029_+	COG1713, COG1713, Predicted HD superfamily hydrolase involved in NAD metabolism [Coenzyme metabolism]	NA|118aa|up_7|NZ_CP029655.1_1757029_1757383_+	COG0799, COG0799, Uncharacterized homolog of plant Iojap protein [Function unknown]	NA|239aa|up_6|NZ_CP029655.1_1757385_1758102_+	pfam13649, Methyltransf_25, Methyltransferase domain	NA|229aa|up_5|NZ_CP029655.1_1758141_1758828_+	COG1555, ComEA, DNA uptake protein and related DNA-binding proteins [DNA replication, recombination, and repair]	NA|154aa|up_4|NZ_CP029655.1_1758919_1759381_+	TIGR02571, putative_dCMP_deaminase, ComE operon protein 2	NA|716aa|up_3|NZ_CP029655.1_1759439_1761587_+	COG2333, ComEC, Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]	NA|325aa|up_2|NZ_CP029655.1_1761643_1762618_+	PRK05574, holA, DNA polymerase III subunit delta; Reviewed	NA|84aa|up_1|NZ_CP029655.1_1762662_1762914_-	PRK00239, rpsT, 30S ribosomal protein S20; Reviewed	NA|608aa|up_0|NZ_CP029655.1_1763259_1765083_+	PRK05433, PRK05433, GTP-binding protein LepA; Provisional	NA|375aa|down_0|NZ_CP029655.1_1765648_1766773_+	PRK08599, PRK08599, oxygen-independent coproporphyrinogen III oxidase	NA|326aa|down_1|NZ_CP029655.1_1766873_1767851_+	TIGR00331, Heat-inducible_transcription_repressor_HrcA, heat shock gene repressor HrcA	NA|209aa|down_2|NZ_CP029655.1_1767882_1768509_+	PRK14140, PRK14140, heat shock protein GrpE; Provisional	NA|611aa|down_3|NZ_CP029655.1_1768577_1770410_+	PRK00290, dnaK, molecular chaperone DnaK; Provisional	NA|380aa|down_4|NZ_CP029655.1_1770545_1771685_+	PRK14280, PRK14280, molecular chaperone DnaJ	NA|313aa|down_5|NZ_CP029655.1_1771688_1772627_+	pfam06325, PrmA, Ribosomal protein L11 methyltransferase (PrmA)	NA|251aa|down_6|NZ_CP029655.1_1772628_1773381_+	COG1385, COG1385, Uncharacterized protein conserved in bacteria [Function unknown]	NA|449aa|down_7|NZ_CP029655.1_1773387_1774734_+	COG0621, MiaB, 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis]	NA|59aa|down_8|NZ_CP029655.1_1775026_1775203_+	PRK00270, rpsU, 30S ribosomal protein S21; Reviewed	NA|228aa|down_9|NZ_CP029655.1_1775446_1776130_+	COG1030, NfeD, Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones]
GCF_003194005.1_ASM319400v1	NZ_CP029655	Staphylococcus aureus strain AR_0469 chromosome, complete genome	9	2554263-2554344	8	CRISPRCasFinder	no		cas3,csa3,WYL,RT,DEDDh,DinG	Orphan	TTCTACAGGCAATGCAAGTTGGGG	24	1	1	2554287-2554320	NZ_CP029655.1_2035298-2035265	NA	1	1	Orphan	cas3,csa3,WYL,RT,DEDDh,DinG	NA,NA|38aa|down_1|NZ_CP029655.1_2555327_2555441_-	NA|417aa|up_9|NZ_CP029655.1_2544690_2545941_-	TIGR01979, Probable_cysteine_desulfurase, cysteine desulfurases, SufSfamily	NA|436aa|up_8|NZ_CP029655.1_2546046_2547354_-	COG0719, SufB, Cysteine desulfurase activator SufB [Posttranslational modification, protein turnover, chaperones]	NA|254aa|up_7|NZ_CP029655.1_2547451_2548213_-	COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]	NA|284aa|up_6|NZ_CP029655.1_2548540_2549392_+	COG2035, COG2035, Predicted membrane protein [Function unknown]	NA|65aa|up_5|NZ_CP029655.1_2549625_2549820_-	COG3237, COG3237, Uncharacterized protein conserved in bacteria [Function unknown]	NA|274aa|up_4|NZ_CP029655.1_2550173_2550995_-	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]	NA|232aa|up_3|NZ_CP029655.1_2551012_2551708_-	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism]	NA|342aa|up_2|NZ_CP029655.1_2551700_2552726_-	COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]	NA|99aa|up_1|NZ_CP029655.1_2552975_2553272_-	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|129aa|up_0|NZ_CP029655.1_2553264_2553651_-	COG1658, COG1658, Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair]	NA|293aa|down_0|NZ_CP029655.1_2554447_2555326_-	COG3878, COG3878, Uncharacterized protein conserved in bacteria [Function unknown]	NA|38aa|down_1|NZ_CP029655.1_2555327_2555441_-	NA	NA|127aa|down_2|NZ_CP029655.1_2555504_2555885_-	PRK01202, PRK01202, glycine cleavage system protein GcvH	NA|119aa|down_3|NZ_CP029655.1_2556042_2556399_-	cd03036, ArsC_like, Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC	NA|107aa|down_4|NZ_CP029655.1_2556542_2556863_+	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|180aa|down_5|NZ_CP029655.1_2557013_2557553_-	cd02135, YdjA-like, nitroreductase family protein similar to Escherichia coli YdjA	NA|239aa|down_6|NZ_CP029655.1_2557635_2558352_-	PRK13575, PRK13575, type I 3-dehydroquinate dehydratase	NA|141aa|down_7|NZ_CP029655.1_2558499_2558922_+	TIGR03561, organ_hyd_perox, peroxiredoxin, Ohr subfamily	NA|165aa|down_8|NZ_CP029655.1_2559320_2559815_+	pfam13420, Acetyltransf_4, Acetyltransferase (GNAT) domain	NA|206aa|down_9|NZ_CP029655.1_2559969_2560587_+	COG1279, COG1279, Lysine efflux permease [General function prediction only]
GCF_003194005.1_ASM319400v1	NZ_CP029655	Staphylococcus aureus strain AR_0469 chromosome, complete genome	10	2603004-2603082	9	CRISPRCasFinder	no	cas3	cas3,csa3,WYL,RT,DEDDh,DinG	Unclear	AGAATTTCGAAAAGAAATTCTACA	24	1	1	2603028-2603058	NZ_CP029655.1_1730827-1730857	NA	1	1	Unclear	cas3,csa3,WYL,RT,DEDDh,DinG	NA,NA|36aa|down_5|NZ_CP029655.1_2610560_2610668_-,NA|35aa|down_7|NZ_CP029655.1_2612100_2612205_-	NA|301aa|up_9|NZ_CP029655.1_2591885_2592788_+	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]	NA|196aa|up_8|NZ_CP029655.1_2593030_2593618_-	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed	NA|315aa|up_7|NZ_CP029655.1_2594181_2595126_-	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA	NA|332aa|up_6|NZ_CP029655.1_2595236_2596232_-	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|304aa|up_5|NZ_CP029655.1_2596228_2597140_-	COG1660, COG1660, Predicted P-loop-containing kinase [General function prediction only]	NA|312aa|up_4|NZ_CP029655.1_2598025_2598961_-	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase	NA|480aa|up_3|NZ_CP029655.1_2599027_2600467_-	sd00008, TPR_YbbN, C-terminal Tetratricopeptide repeat (TPR) region of YbbN and similar motifs	NA|162aa|up_2|NZ_CP029655.1_2600474_2600960_-	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins	NA|280aa|up_1|NZ_CP029655.1_2600967_2601807_-	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed	NA|311aa|up_0|NZ_CP029655.1_2601812_2602745_-	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional	NA|949aa|down_0|NZ_CP029655.1_2603408_2606255_-	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|662aa|down_1|NZ_CP029655.1_2606262_2608248_-	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|79aa|down_2|NZ_CP029655.1_2608516_2608753_-	COG4897, CsbA, Uncharacterized protein conserved in bacteria [Function unknown]	NA|217aa|down_3|NZ_CP029655.1_2608749_2609400_-	pfam12917, HD_2, HD containing hydrolase-like enzyme	NA|280aa|down_4|NZ_CP029655.1_2609573_2610413_-	COG3942, COG3942, Surface antigen [General function prediction only]	NA|36aa|down_5|NZ_CP029655.1_2610560_2610668_-	NA	NA|370aa|down_6|NZ_CP029655.1_2610821_2611932_-	PRK00578, prfB, peptide chain release factor 2; Validated	NA|35aa|down_7|NZ_CP029655.1_2612100_2612205_-	NA	NA|844aa|down_8|NZ_CP029655.1_2612246_2614778_-	PRK12904, PRK12904, preprotein translocase subunit SecA; Reviewed	NA|191aa|down_9|NZ_CP029655.1_2615191_2615764_-	COG1544, COG1544, Ribosome-associated protein Y (PSrp-1) [Translation, ribosomal structure and biogenesis]
