The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP029655	Staphylococcus aureus strain AR_0469 chromosome, complete genome	2857253	503979	541010	2857253	transposase,integrase	Staphylococcus_phage(50.0%)	37	502004:502021	531263:531280
502004:502021	attL	TAAATAAATAATATATAA	NA	NA	NA	NA
WP_000868132.1|503979_505065_+|integrase	tyrosine-type recombinase/integrase	integrase	A0A0A8WIF9	Clostridium_phage	28.3	4.5e-12
WP_001557544.1|505061_506954_+|integrase	tyrosine-type recombinase/integrase	integrase	NA	NA	NA	NA
WP_000361059.1|506960_507338_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_000067268.1|507488_508271_+	aminoglycoside nucleotidyltransferase ANT(9)-Ia	NA	NA	NA	NA	NA
WP_001072201.1|508396_509128_-	23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(A)	NA	E4ZFQ0	Streptococcus_phage	47.5	1.9e-51
WP_001092058.1|509520_510183_+	methyltransferase domain-containing protein	NA	NA	NA	NA	NA
WP_000350222.1|510521_511166_-	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
WP_000220507.1|511165_511426_-	persulfide-sensing transcriptional repressor CstR	NA	NA	NA	NA	NA
WP_110231660.1|511561_512626_+	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_000465482.1|512658_513597_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_001136659.1|513687_513993_+	rhodanese-like domain-containing protein	NA	NA	NA	NA	NA
WP_010922808.1|514106_515237_-	ROK family transcriptional regulator	NA	NA	NA	NA	NA
WP_014532405.1|515570_515639_+	phenol-soluble modulin PSM-mec	NA	NA	NA	NA	NA
WP_000369214.1|515723_516095_-	mecA-type methicillin resistance repressor MecI	NA	NA	NA	NA	NA
WP_000952923.1|516094_517852_-	beta-lactam sensor/signal transducer MecR1	NA	NA	NA	NA	NA
WP_001801873.1|517948_519958_+	PBP2a family beta-lactam-resistant peptidoglycan transpeptidase MecA	NA	NA	NA	NA	NA
WP_000872606.1|520003_520432_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_000958858.1|520528_521272_-	glycerophosphoryl diester phosphodiesterase	NA	NA	NA	NA	NA
WP_001106057.1|521536_522211_+|transposase	IS6-like element IS257 family transposase	transposase	A0A0N9RU54	Staphylococcus_phage	99.1	2.6e-127
WP_001795128.1|522403_523174_+	aminoglycoside O-nucleotidyltransferase ANT(4')-Ia	NA	NA	NA	NA	NA
WP_001242578.1|523390_523795_+	bleomycin binding protein	NA	NA	NA	NA	NA
WP_000119405.1|524301_525564_+	plasmid recombination protein	NA	NA	NA	NA	NA
WP_000336290.1|525808_526582_+	protein rep	NA	NA	NA	NA	NA
WP_001817892.1|526594_526792_+	protein rep	NA	A0A286QS97	Streptococcus_phage	62.0	1.2e-08
WP_001106057.1|526882_527557_+|transposase	IS6-like element IS257 family transposase	transposase	A0A0N9RU54	Staphylococcus_phage	99.1	2.6e-127
WP_001282728.1|527588_527828_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000566670.1|528242_529499_-	DUF3578 domain-containing protein	NA	NA	NA	NA	NA
WP_049370426.1|530777_531047_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000475804.1|531928_532360_+	universal stress protein	NA	NA	NA	NA	NA
531263:531280	attR	TAAATAAATAATATATAA	NA	NA	NA	NA
WP_078147993.1|532630_532942_-	DUF3387 domain-containing protein	NA	NA	NA	NA	NA
WP_000711815.1|533885_534332_+	ArgR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000249804.1|534600_535836_+	arginine deiminase	NA	NA	NA	NA	NA
WP_000344142.1|535921_537343_+	arginine-ornithine antiporter	NA	NA	NA	NA	NA
WP_000272781.1|537384_538074_+	Crp/Fnr family transcriptional regulator	NA	NA	NA	NA	NA
WP_000793596.1|538111_539110_+	ornithine carbamoyltransferase	NA	NA	NA	NA	NA
WP_000036756.1|539129_540059_+	carbamate kinase	NA	NA	NA	NA	NA
WP_000832687.1|540158_541010_-|transposase	IS3 family transposase	transposase	A0A0N9SIX5	Staphylococcus_phage	95.7	1.4e-69
>prophage 2
NZ_CP029655	Staphylococcus aureus strain AR_0469 chromosome, complete genome	2857253	1401219	1476602	2857253	transposase,terminase,tail,portal,capsid,head,integrase,tRNA,holin,plate	Staphylococcus_phage(61.19%)	88	1393061:1393078	1420166:1420183
1393061:1393078	attL	ATCATCATCTTGTTCGTC	NA	NA	NA	NA
WP_001145721.1|1401219_1402266_-|integrase	site-specific integrase	integrase	Q4ZE08	Staphylococcus_virus	100.0	4.2e-201
WP_000392109.1|1402476_1403157_-	hypothetical protein	NA	A0A2H4PQQ5	Staphylococcus_phage	100.0	5.1e-123
WP_001208487.1|1403192_1403963_-	helix-turn-helix domain-containing protein	NA	A0A1X9H0P5	Staphylococcus_phage	97.3	3.2e-137
WP_000338187.1|1404122_1404344_+	DUF739 family protein	NA	A0A1X9H090	Staphylococcus_phage	100.0	7.6e-36
WP_000435355.1|1404367_1404811_+	hypothetical protein	NA	A0A0H3U2S6	Staphylococcus_phage	99.3	2.0e-75
WP_000939501.1|1404825_1404969_+	hypothetical protein	NA	Q4ZAL7	Staphylococcus_virus	97.9	7.4e-16
WP_000642493.1|1404958_1405168_-	hypothetical protein	NA	W5R9J5	Staphylococcus_phage	98.6	5.9e-30
WP_001572437.1|1405224_1405968_+	phage antirepressor protein	NA	A0A0E3T9K5	Staphylococcus_phage	99.2	8.9e-137
WP_000395455.1|1406143_1406374_-	hypothetical protein	NA	C8CGY3	Staphylococcus_phage	100.0	2.3e-35
WP_000594789.1|1406444_1406666_+	hypothetical protein	NA	B2ZYU8	Staphylococcus_phage	100.0	8.7e-32
WP_000066011.1|1406658_1406820_+	DUF1270 domain-containing protein	NA	Q4ZAZ7	Staphylococcus_virus	100.0	2.5e-20
WP_000291095.1|1406916_1407177_+	DUF1108 family protein	NA	Q4ZDA1	Staphylococcus_virus	98.8	4.4e-43
WP_001077280.1|1407186_1407408_+	DUF2483 family protein	NA	A0A0E3TAJ7	Staphylococcus_phage	100.0	2.4e-34
WP_000139737.1|1407400_1408180_+	ATP-binding protein	NA	Q9G028	Staphylococcus_virus	100.0	2.5e-142
WP_011447037.1|1408263_1408764_+	single-strand DNA-binding protein	NA	A7TWM8	Staphylococcus_phage	100.0	7.2e-90
WP_001199435.1|1408776_1409442_+	hypothetical protein	NA	Q8SDW3	Staphylococcus_phage	99.5	7.0e-125
WP_000240901.1|1409441_1410221_+	AP2 domain-containing protein	NA	A0A2H4J5K3	uncultured_Caudovirales_phage	46.1	7.3e-49
WP_000504990.1|1410192_1410984_+	replication protein	NA	A0A2H4JCF5	uncultured_Caudovirales_phage	78.3	6.6e-90
WP_001564581.1|1410993_1411767_+	ATP-binding protein	NA	A0A2H4PQI3	Staphylococcus_phage	98.8	1.5e-142
WP_000256592.1|1411760_1411919_+	hypothetical protein	NA	A1KX06	Staphylococcus_virus	98.1	9.9e-22
WP_001123673.1|1411931_1412153_+	DUF3269 family protein	NA	A7TWN4	Staphylococcus_phage	100.0	1.3e-35
WP_000401956.1|1412162_1412570_+	RusA family crossover junction endodeoxyribonuclease	NA	A9CR74	Staphylococcus_phage	97.8	3.2e-72
WP_001187255.1|1412569_1412755_+	DUF3113 family protein	NA	Q4ZA46	Staphylococcus_virus	95.1	1.3e-25
WP_001140287.1|1412755_1413127_+	hypothetical protein	NA	Q4ZAY2	Staphylococcus_virus	98.4	8.5e-56
WP_001126828.1|1413127_1413376_+	hypothetical protein	NA	A4ZF93	Staphylococcus_virus	100.0	9.4e-43
WP_000695748.1|1413390_1413792_+	hypothetical protein	NA	A0EWR3	Staphylococcus_virus	100.0	2.0e-71
WP_000982697.1|1413788_1414205_+	hypothetical protein	NA	A0A0D4DC71	Staphylococcus_phage	60.3	1.0e-17
WP_001105596.1|1414201_1414567_+	hypothetical protein	NA	A0A0F6N3K4	Staphylococcus_phage	96.3	2.4e-50
WP_001065124.1|1414559_1414808_+	DUF1024 family protein	NA	A0A0E3T8I2	Staphylococcus_phage	93.9	6.5e-36
WP_000185665.1|1414800_1415310_+	hypothetical protein	NA	M9NS45	Staphylococcus_phage	98.2	1.6e-89
WP_000195838.1|1415346_1415634_+	DUF1381 domain-containing protein	NA	Q4ZBK2	Staphylococcus_phage	100.0	4.3e-47
WP_000592235.1|1415626_1416013_+	hypothetical protein	NA	Q4ZBK1	Staphylococcus_phage	98.4	3.0e-64
WP_000595236.1|1416009_1416183_+	transcriptional activator RinB	NA	Q4ZDF9	Staphylococcus_virus	98.2	6.4e-22
WP_000990005.1|1416183_1416330_+	hypothetical protein	NA	B2ZYX7	Staphylococcus_phage	100.0	2.2e-15
WP_000162696.1|1416353_1416776_+	RinA family phage transcriptional activator	NA	S4V7K2	Staphylococcus_phage	100.0	1.6e-74
WP_001003271.1|1416962_1417403_+|terminase	terminase small subunit	terminase	I1W650	Staphylococcus_phage	100.0	4.8e-74
WP_000169945.1|1417389_1418667_+|terminase	PBSX family phage terminase large subunit	terminase	S4V685	Staphylococcus_phage	100.0	1.3e-249
WP_001652961.1|1418677_1420213_+|portal	phage portal protein	portal	Q4ZDN2	Staphylococcus_virus	100.0	4.5e-292
1420166:1420183	attR	GACGAACAAGATGATGAT	NA	NA	NA	NA
WP_001133044.1|1420219_1421215_+|capsid	minor capsid protein	capsid	A0A0F6N3F1	Staphylococcus_phage	100.0	2.0e-184
WP_000072208.1|1421287_1421458_+	hypothetical protein	NA	A0A0F6N3E9	Staphylococcus_phage	100.0	1.5e-23
WP_000392151.1|1421566_1422187_+	DUF4355 domain-containing protein	NA	S4V984	Staphylococcus_phage	98.5	1.7e-69
WP_000438511.1|1422200_1423175_+|capsid	phage major capsid protein	capsid	E0Y3L0	Staphylococcus_virus	100.0	2.2e-183
WP_001114086.1|1423196_1423484_+	hypothetical protein	NA	S4V6D9	Staphylococcus_phage	98.9	1.4e-45
WP_000208960.1|1423492_1423825_+|head,tail	phage head-tail connector protein	head,tail	A0A0F6N3F4	Staphylococcus_phage	100.0	5.5e-54
WP_001268312.1|1423821_1424124_+	hypothetical protein	NA	A4ZFB6	Staphylococcus_virus	100.0	1.1e-50
WP_001017815.1|1424123_1424471_+	HK97 gp10 family phage protein	NA	A0A0F6N3F5	Staphylococcus_phage	100.0	4.1e-60
WP_000188643.1|1424482_1424866_+	hypothetical protein	NA	E0Y3L5	Staphylococcus_virus	98.4	3.8e-67
WP_000002577.1|1424884_1425466_+|tail	phage major tail protein, TP901-1 family	tail	A0A0F6N3L8	Staphylococcus_phage	100.0	4.9e-106
WP_001100161.1|1425527_1425893_+	hypothetical protein	NA	A0A0F6N4J9	Staphylococcus_phage	100.0	3.6e-59
WP_000105584.1|1425922_1426267_+	hypothetical protein	NA	A0A0F6N3F7	Staphylococcus_phage	100.0	2.5e-57
WP_000141470.1|1426283_1429748_+	hypothetical protein	NA	Q4ZDL9	Staphylococcus_virus	100.0	2.3e-267
WP_001557971.1|1429760_1430708_+|tail	phage tail family protein	tail	Q8SDT6	Staphylococcus_phage	99.7	6.1e-183
WP_000152714.1|1430716_1432618_+	peptidase	NA	I1W634	Staphylococcus_phage	99.8	0.0e+00
WP_000369003.1|1432632_1434543_+	hypothetical protein	NA	Q4ZDU1	Staphylococcus_virus	98.7	0.0e+00
WP_001564569.1|1434542_1436366_+|plate	BppU family phage baseplate upper protein	plate	M9NUJ5	Staphylococcus_phage	92.9	1.1e-276
WP_000705910.1|1436365_1436743_+	DUF2977 domain-containing protein	NA	Q9FZY7	Staphylococcus_virus	100.0	1.2e-60
WP_015990323.1|1436752_1436926_+	XkdX family protein	NA	B2ZZ00	Staphylococcus_phage	100.0	1.0e-27
WP_000466778.1|1436966_1437266_+	DUF2951 domain-containing protein	NA	A0A0H4ITZ0	Staphylococcus_phage	100.0	7.6e-47
WP_001628105.1|1437402_1439301_+	CHAP domain-containing protein	NA	Q8SDT1	Staphylococcus_phage	99.4	0.0e+00
WP_001624558.1|1439313_1440552_+|plate	BppU family phage baseplate upper protein	plate	A0A0F6N3G7	Staphylococcus_phage	98.8	2.5e-208
WP_000398868.1|1440557_1440953_+	hypothetical protein	NA	A1KXB6	Staphylococcus_virus	100.0	1.6e-68
WP_000354132.1|1441008_1441446_+|holin	phage holin	holin	A0A2H4PQP0	Staphylococcus_phage	100.0	4.1e-73
WP_001655835.1|1441426_1442872_+	CHAP domain-containing protein	NA	A0EWV1	Staphylococcus_virus	99.2	6.5e-293
WP_000385047.1|1443277_1443940_+	hypothetical protein	NA	Q4ZB12	Staphylococcus_virus	100.0	7.4e-119
WP_001190816.1|1443954_1444596_+	hypothetical protein	NA	Q4ZB11	Staphylococcus_virus	100.0	9.7e-116
WP_100250272.1|1444696_1444777_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001005407.1|1445123_1445285_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000163283.1|1445415_1445931_+	type 1 glutamine amidotransferase	NA	NA	NA	NA	NA
WP_000830384.1|1446270_1447080_+	monofunctional peptidoglycan glycosyltransferase SgtB	NA	NA	NA	NA	NA
WP_001124422.1|1447340_1448159_+	recombination regulator RecX	NA	NA	NA	NA	NA
WP_001294033.1|1448160_1448451_+	YfhH family protein	NA	NA	NA	NA	NA
WP_000535834.1|1448465_1449983_+	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_000886462.1|1449991_1450828_+	membrane protein	NA	NA	NA	NA	NA
WP_000379098.1|1451088_1452066_-	metal-dependent hydrolase	NA	NA	NA	NA	NA
WP_000284765.1|1452217_1453255_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
WP_000251253.1|1453557_1454100_+	DUF402 domain-containing protein	NA	NA	NA	NA	NA
WP_000597238.1|1454390_1456127_+	SAV1866 family putative multidrug efflux ABC transporter	NA	W8CYL7	Bacillus_phage	30.4	1.7e-53
WP_001236371.1|1456316_1457411_-	aromatic acid exporter family protein	NA	NA	NA	NA	NA
WP_001011595.1|1457703_1458993_-	glutamate-1-semialdehyde 2,1-aminomutase	NA	NA	NA	NA	NA
WP_000939528.1|1459073_1459529_+	thioredoxin-dependent thiol peroxidase	NA	NA	NA	NA	NA
WP_000869447.1|1459534_1460485_+	2-hydroxyacid dehydrogenase	NA	NA	NA	NA	NA
WP_000110007.1|1460581_1461028_+	peroxide-responsive transcriptional repressor PerR	NA	NA	NA	NA	NA
WP_001557163.1|1469454_1470774_-|transposase	ISL3-like element IS1181 family transposase	transposase	NA	NA	NA	NA
WP_000063582.1|1471357_1472419_+	PTS transporter subunit IIC	NA	NA	NA	NA	NA
WP_000649908.1|1472676_1474134_+	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_001144055.1|1474120_1474849_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	42.7	1.0e-36
WP_001793998.1|1474984_1476127_+|tRNA	tRNA epoxyqueuosine(34) reductase QueG	tRNA	NA	NA	NA	NA
WP_000181395.1|1476131_1476602_+|tRNA	tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL	tRNA	NA	NA	NA	NA
>prophage 3
NZ_CP029655	Staphylococcus aureus strain AR_0469 chromosome, complete genome	2857253	1514412	1576622	2857253	protease,tRNA	Staphylococcus_phage(95.56%)	58	NA	NA
WP_000473596.1|1514412_1515348_+	beta-channel forming cytolysin	NA	A0A2H4PQI5	Staphylococcus_phage	100.0	1.4e-174
WP_000782463.1|1515349_1516333_+	bi-component leukocidin LukED subunit D	NA	A0A2H4PQH7	Staphylococcus_phage	99.4	1.8e-185
WP_000543854.1|1516702_1517494_-	DUF1828 domain-containing protein	NA	NA	NA	NA	NA
WP_000550252.1|1517498_1517972_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000469591.1|1518227_1518446_+	hypothetical protein	NA	A0A2H4PQH0	Staphylococcus_phage	80.6	2.0e-25
WP_001092780.1|1518918_1519500_-	DUF4888 domain-containing protein	NA	A0A2H4PQH6	Staphylococcus_phage	64.8	9.6e-54
WP_001039427.1|1520463_1521171_+|protease	serine protease SplA	protease	A0A2H4PQN3	Staphylococcus_phage	97.0	7.9e-127
WP_001039454.1|1521295_1522018_+|protease	serine protease SplB	protease	A0A2H4PQN0	Staphylococcus_phage	98.3	3.5e-130
WP_001038872.1|1522075_1522795_+|protease	serine protease SplC	protease	A0A2H4PQP7	Staphylococcus_phage	98.7	1.3e-129
WP_001038704.1|1522915_1523635_+|protease	serine protease SplD	protease	A0A2H4PQP9	Staphylococcus_phage	99.6	4.6e-130
WP_011447030.1|1523583_1523691_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001791797.1|1524574_1524709_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001793440.1|1524689_1526429_+	type I restriction-modification system subunit M	NA	A0A2H4PQP4	Staphylococcus_phage	100.0	2.4e-289
WP_000072627.1|1526421_1527651_+	restriction endonuclease subunit S	NA	A0A2H4PQP5	Staphylococcus_phage	64.7	4.0e-134
WP_001792025.1|1528726_1528828_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001801861.1|1528950_1529046_-	type I toxin-antitoxin system Fst family toxin PepA1	NA	NA	NA	NA	NA
WP_000414216.1|1530400_1530973_-	hypothetical protein	NA	A0A2H4PQN4	Staphylococcus_phage	93.1	2.3e-23
WP_000627540.1|1531073_1531415_-	DUF3969 family protein	NA	A0A2H4PQN6	Staphylococcus_phage	94.7	1.1e-54
WP_000669024.1|1531455_1532082_-	hypothetical protein	NA	A0A2H4PQM7	Staphylococcus_phage	79.8	3.1e-74
WP_000070642.1|1532156_1533152_-	DUF4352 domain-containing protein	NA	A0A2H4PQN2	Staphylococcus_phage	97.9	2.6e-67
WP_001795210.1|1533232_1533883_-	calcium-binding protein	NA	A0A2H4PQM8	Staphylococcus_phage	94.0	2.9e-51
WP_012840523.1|1534186_1534642_+	DUF4909 domain-containing protein	NA	A0A2H4PQN7	Staphylococcus_phage	99.3	3.6e-80
WP_000348364.1|1534800_1536279_+	o-succinylbenzoate--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	97.6	2.8e-283
WP_000778528.1|1536283_1537285_+	o-succinylbenzoate synthase	NA	A0A2H4PQM0	Staphylococcus_phage	97.3	5.3e-185
WP_000718107.1|1537281_1537539_-	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	100.0	7.2e-46
WP_000672013.1|1537604_1538078_+	nucleoside triphosphatase YtkD	NA	A0A2H4PQM4	Staphylococcus_phage	98.7	7.2e-84
WP_001822900.1|1538082_1538829_+	S9 family peptidase	NA	A0A2H4PQM6	Staphylococcus_phage	98.8	1.4e-142
WP_000109906.1|1539206_1540799_-	phosphoenolpyruvate carboxykinase (ATP)	NA	A0A2H4PQN1	Staphylococcus_phage	100.0	0.0e+00
WP_000933820.1|1541170_1542367_+	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	99.5	4.3e-218
WP_000366163.1|1542488_1543397_+	NERD domain-containing protein	NA	A0A2H4PQQ8	Staphylococcus_phage	100.0	3.4e-138
WP_000453306.1|1543608_1544442_+	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	99.3	7.8e-158
WP_000623470.1|1546438_1546792_-	CrcB family protein	NA	A0A2H4PQQ7	Staphylococcus_phage	94.0	3.8e-21
WP_001200542.1|1546788_1547154_-	fluoride efflux transporter CrcB	NA	A0A2H4PQR0	Staphylococcus_phage	100.0	3.6e-59
WP_000091442.1|1547409_1547712_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001096494.1|1547971_1548685_+	transaldolase	NA	M1PR54	Cyanophage	35.3	5.5e-19
WP_001168903.1|1549124_1549760_-|protease	CPBP family intramembrane metalloprotease SdpA	protease	NA	NA	NA	NA
WP_001030469.1|1550055_1550499_+	hypothetical protein	NA	A0A2H4PQT8	Staphylococcus_phage	98.6	2.4e-57
WP_001153742.1|1550485_1550929_-	competence protein ComK	NA	NA	NA	NA	NA
WP_000671057.1|1551041_1551512_-	RNA polymerase sigma factor	NA	A0A2H4PQT5	Staphylococcus_phage	98.1	8.8e-82
WP_000384171.1|1551710_1551935_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001032833.1|1552210_1553065_+	autolysin	NA	Q4ZCC7	Staphylococcus_virus	38.6	9.8e-39
WP_000989121.1|1553151_1554444_-	arsenite efflux transporter membrane subunit ArsB	NA	A0A2H4PQU3	Staphylococcus_phage	99.5	5.0e-228
WP_000221177.1|1554443_1554758_-	winged helix-turn-helix transcriptional regulator	NA	A0A2H4PQT4	Staphylococcus_phage	98.1	9.8e-53
WP_001261668.1|1555280_1556783_+	FAD-dependent oxidoreductase	NA	A0A2H4PQX2	Staphylococcus_phage	98.6	1.9e-29
WP_000384185.1|1557275_1558307_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	98.8	4.0e-196
WP_000493887.1|1558313_1558946_+	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	98.6	5.5e-111
WP_001159037.1|1558956_1560138_+	3,4-dihydroxy-2-butanone-4-phosphate synthase	NA	A0A2H4PQS2	Staphylococcus_phage	99.5	5.6e-226
WP_001008549.1|1560150_1560615_+	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	100.0	4.5e-70
WP_001196362.1|1560736_1561738_-	proline dehydrogenase	NA	A0A2H4PQT6	Staphylococcus_phage	99.4	2.6e-184
WP_001790712.1|1561848_1561968_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000266096.1|1561970_1562798_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_000757543.1|1563369_1563771_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000764419.1|1563893_1564457_-	methyltransferase domain-containing protein	NA	A0A2H4PQV0	Staphylococcus_phage	99.5	8.3e-103
WP_000526539.1|1564453_1565407_-	TIGR01212 family radical SAM protein	NA	A0A2H4PQV5	Staphylococcus_phage	100.0	2.2e-79
WP_001025067.1|1565516_1566698_+	MFS transporter	NA	A0A2H4PQR6	Staphylococcus_phage	99.7	7.3e-218
WP_001108730.1|1566988_1569403_+|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	99.5	0.0e+00
WP_000836461.1|1569424_1569736_+	rhodanese-like domain-containing protein	NA	A0A2H4PQR9	Staphylococcus_phage	99.0	4.8e-52
WP_001050568.1|1570061_1576622_+	LPXTG-anchored repetitive surface protein SasC	NA	A0A2H4PQU6	Staphylococcus_phage	98.3	6.1e-306
>prophage 4
NZ_CP029655	Staphylococcus aureus strain AR_0469 chromosome, complete genome	2857253	1706626	1715669	2857253	tRNA	uncultured_Mediterranean_phage(50.0%)	7	NA	NA
WP_001005768.1|1706626_1707631_+	Holliday junction branch migration DNA helicase RuvB	NA	B3GAM6	uncultured_virus	29.1	1.7e-05
WP_001019178.1|1707632_1708658_+|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_001112045.1|1708680_1709820_+|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.7	5.4e-85
WP_001160682.1|1709838_1710099_+	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	35.3	8.2e-05
WP_000749795.1|1710373_1712653_+	protein translocase subunit SecDF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.8	1.8e-31
WP_000595011.1|1712855_1715129_+	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	29.3	8.1e-64
WP_000364542.1|1715150_1715669_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	46.5	5.6e-29
>prophage 5
NZ_CP029655	Staphylococcus aureus strain AR_0469 chromosome, complete genome	2857253	2333979	2342452	2857253		Synechococcus_phage(33.33%)	9	NA	NA
WP_000238669.1|2333979_2334546_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	40.1	6.1e-29
WP_000030811.1|2334548_2335577_-	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	41.7	3.4e-62
WP_000483720.1|2335569_2337054_-	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	31.7	1.9e-45
WP_000032740.1|2337032_2339222_-	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	39.8	3.5e-141
WP_000666806.1|2339214_2339886_-	phosphoribosylformylglycinamidine synthase I	NA	NA	NA	NA	NA
WP_000848350.1|2339887_2340151_-	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
WP_000174053.1|2340150_2340855_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	M4R1E8	Synechococcus_phage	42.1	7.3e-48
WP_001010413.1|2340858_2341983_-	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA	NA
WP_000861573.1|2341969_2342452_-	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	44.7	8.0e-22
>prophage 6
NZ_CP029655	Staphylococcus aureus strain AR_0469 chromosome, complete genome	2857253	2489008	2545941	2857253	transposase,terminase,tail,portal,capsid,head,integrase,holin,plate	Staphylococcus_phage(74.65%)	83	2513180:2513196	2547829:2547845
WP_001557163.1|2489008_2490328_-|transposase	ISL3-like element IS1181 family transposase	transposase	NA	NA	NA	NA
WP_000598444.1|2490533_2490917_-	YutD family protein	NA	NA	NA	NA	NA
WP_000201875.1|2491046_2491964_-	lipoyl synthase	NA	NA	NA	NA	NA
WP_001241246.1|2492047_2493367_-	bifunctional metallophosphatase/5'-nucleotidase	NA	NA	NA	NA	NA
WP_000927632.1|2493393_2494221_-	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
WP_000608129.1|2494233_2495082_-	DUF72 domain-containing protein	NA	NA	NA	NA	NA
WP_016170465.1|2495129_2495213_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000267236.1|2495466_2496534_-	nitronate monooxygenase	NA	NA	NA	NA	NA
WP_000582326.1|2496547_2497588_-	HlyC/CorC family transporter	NA	NA	NA	NA	NA
WP_000274029.1|2497952_2498267_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000382163.1|2499096_2499297_-	hypothetical protein	NA	W5R9N2	Staphylococcus_phage	100.0	3.7e-29
WP_000139423.1|2499283_2499394_-	hypothetical protein	NA	W5R8J7	Staphylococcus_phage	100.0	1.7e-12
WP_001788502.1|2499464_2499617_-	hypothetical protein	NA	A0A0F6N3H2	Staphylococcus_phage	100.0	3.1e-20
WP_001035620.1|2499991_2500549_+	DUF4888 domain-containing protein	NA	A0A0F6N4L1	Staphylococcus_phage	100.0	7.4e-96
WP_001141517.1|2500608_2502021_-	CHAP domain-containing protein	NA	A0A0F6N3N1	Staphylococcus_phage	100.0	5.8e-286
WP_000351119.1|2502007_2502283_-|holin	phage holin	holin	A0A0F6N3M0	Staphylococcus_phage	100.0	8.6e-45
WP_000398868.1|2502338_2502734_-	hypothetical protein	NA	A1KXB6	Staphylococcus_virus	100.0	1.6e-68
WP_001624558.1|2502739_2503978_-|plate	BppU family phage baseplate upper protein	plate	A0A0F6N3G7	Staphylococcus_phage	98.8	2.5e-208
WP_001628105.1|2503990_2505889_-	CHAP domain-containing protein	NA	Q8SDT1	Staphylococcus_phage	99.4	0.0e+00
WP_000466778.1|2506025_2506325_-	DUF2951 domain-containing protein	NA	A0A0H4ITZ0	Staphylococcus_phage	100.0	7.6e-47
WP_015990323.1|2506365_2506539_-	XkdX family protein	NA	B2ZZ00	Staphylococcus_phage	100.0	1.0e-27
WP_000705910.1|2506548_2506926_-	DUF2977 domain-containing protein	NA	Q9FZY7	Staphylococcus_virus	100.0	1.2e-60
WP_001564569.1|2506925_2508749_-|plate	BppU family phage baseplate upper protein	plate	M9NUJ5	Staphylococcus_phage	92.9	1.1e-276
WP_000369003.1|2508748_2510659_-	hypothetical protein	NA	Q4ZDU1	Staphylococcus_virus	98.7	0.0e+00
WP_000152714.1|2510673_2512575_-	peptidase	NA	I1W634	Staphylococcus_phage	99.8	0.0e+00
WP_001557971.1|2512583_2513531_-|tail	phage tail family protein	tail	Q8SDT6	Staphylococcus_phage	99.7	6.1e-183
2513180:2513196	attL	TGTTTTTATCTAATTTC	NA	NA	NA	NA
WP_000141470.1|2513543_2517008_-	hypothetical protein	NA	Q4ZDL9	Staphylococcus_virus	100.0	2.3e-267
WP_000105584.1|2517024_2517369_-	hypothetical protein	NA	A0A0F6N3F7	Staphylococcus_phage	100.0	2.5e-57
WP_001100161.1|2517398_2517764_-	hypothetical protein	NA	A0A0F6N4J9	Staphylococcus_phage	100.0	3.6e-59
WP_000002577.1|2517825_2518407_-|tail	phage major tail protein, TP901-1 family	tail	A0A0F6N3L8	Staphylococcus_phage	100.0	4.9e-106
WP_000188643.1|2518425_2518809_-	hypothetical protein	NA	E0Y3L5	Staphylococcus_virus	98.4	3.8e-67
WP_001017815.1|2518820_2519168_-	HK97 gp10 family phage protein	NA	A0A0F6N3F5	Staphylococcus_phage	100.0	4.1e-60
WP_001268312.1|2519167_2519470_-	hypothetical protein	NA	A4ZFB6	Staphylococcus_virus	100.0	1.1e-50
WP_000208960.1|2519466_2519799_-|head,tail	phage head-tail connector protein	head,tail	A0A0F6N3F4	Staphylococcus_phage	100.0	5.5e-54
WP_001114086.1|2519807_2520095_-	hypothetical protein	NA	S4V6D9	Staphylococcus_phage	98.9	1.4e-45
WP_000438511.1|2520116_2521091_-|capsid	phage major capsid protein	capsid	E0Y3L0	Staphylococcus_virus	100.0	2.2e-183
WP_000072208.1|2521831_2522002_-	hypothetical protein	NA	A0A0F6N3E9	Staphylococcus_phage	100.0	1.5e-23
WP_001133044.1|2522074_2523070_-|capsid	minor capsid protein	capsid	A0A0F6N3F1	Staphylococcus_phage	100.0	2.0e-184
WP_000909970.1|2523076_2524615_-|portal	phage portal protein	portal	A0A0F6N4I8	Staphylococcus_phage	100.0	2.4e-293
WP_000273011.1|2524625_2525921_-|terminase	PBSX family phage terminase large subunit	terminase	A0A0F6N3L3	Staphylococcus_phage	100.0	3.0e-257
WP_001038244.1|2525923_2526418_-|terminase	terminase small subunit	terminase	A0A0F6N3K6	Staphylococcus_phage	100.0	7.8e-89
WP_000162701.1|2526605_2527028_-	RinA family phage transcriptional activator	NA	A0A0F6N3E5	Staphylococcus_phage	100.0	1.2e-74
WP_000990004.1|2527093_2527198_-	hypothetical protein	NA	B2ZYX7	Staphylococcus_phage	100.0	7.0e-08
WP_000595257.1|2527198_2527372_-	transcriptional activator RinB	NA	Q4ZBK0	Staphylococcus_phage	100.0	6.4e-22
WP_000608278.1|2527364_2527601_-	hypothetical protein	NA	Q4ZDP0	Staphylococcus_virus	100.0	2.8e-36
WP_001072795.1|2527593_2527797_-	hypothetical protein	NA	A0A0N9BAX5	Staphylococcus_phage	100.0	5.2e-31
WP_000132921.1|2527793_2527988_-	hypothetical protein	NA	A0A2I6PEC2	Staphylococcus_phage	100.0	6.0e-29
WP_000617154.1|2527984_2528191_-	DUF1381 domain-containing protein	NA	A0A0H3U2R7	Staphylococcus_phage	72.1	1.0e-18
WP_000185647.1|2528227_2528761_-	dUTP pyrophosphatase	NA	A1KX16	Staphylococcus_virus	99.4	2.4e-96
WP_072471035.1|2528753_2528948_-	hypothetical protein	NA	A0A0E3T9L7	Staphylococcus_phage	87.5	8.5e-23
WP_001065060.1|2528910_2529165_-	DUF1024 family protein	NA	A1KX15	Staphylococcus_virus	97.6	2.5e-38
WP_001557190.1|2529157_2529529_-	hypothetical protein	NA	A0A0F6N3K4	Staphylococcus_phage	100.0	3.6e-54
WP_000131376.1|2529537_2529780_-	hypothetical protein	NA	A0A0F6N3E1	Staphylococcus_phage	98.8	1.9e-40
WP_000029376.1|2529783_2530140_-	hypothetical protein	NA	A0A0F6N3E3	Staphylococcus_phage	100.0	6.5e-61
WP_000101252.1|2530267_2530573_-	hypothetical protein	NA	A0A0F6N4H9	Staphylococcus_phage	100.0	1.7e-49
WP_001187243.1|2530573_2530759_-	DUF3113 family protein	NA	A0A0F6N3K7	Staphylococcus_phage	100.0	1.1e-27
WP_000049794.1|2530763_2531168_-	DUF1064 domain-containing protein	NA	A1KX76	Staphylococcus_virus	100.0	9.6e-69
WP_001123695.1|2531177_2531399_-	DUF3269 family protein	NA	A0A0H3U2V4	Staphylococcus_phage	100.0	2.2e-35
WP_000256589.1|2531411_2531570_-	hypothetical protein	NA	A0A2H4PQI7	Staphylococcus_phage	100.0	4.5e-22
WP_000803062.1|2531563_2532343_-	ATP-binding protein	NA	G4KNP1	Staphylococcus_phage	100.0	3.8e-146
WP_000190254.1|2532352_2533123_-	hypothetical protein	NA	G4KNP0	Staphylococcus_phage	100.0	6.4e-122
WP_000414755.1|2533188_2533470_+	hypothetical protein	NA	A0A1W6JPU7	Staphylococcus_phage	100.0	2.6e-49
WP_001124438.1|2533608_2534283_-	hypothetical protein	NA	R4IH15	Staphylococcus_phage	96.9	1.4e-125
WP_000934385.1|2534296_2534725_-	single-stranded DNA-binding protein	NA	B2ZYV4	Staphylococcus_phage	100.0	3.9e-60
WP_000139720.1|2534724_2535348_-	DUF1071 domain-containing protein	NA	A0A2H4PQQ6	Staphylococcus_phage	100.0	1.4e-114
WP_000815401.1|2535340_2535562_-	DUF2483 family protein	NA	A7TWM6	Staphylococcus_phage	100.0	3.2e-34
WP_000291090.1|2535571_2535832_-	DUF1108 family protein	NA	Q4ZDA1	Staphylococcus_virus	100.0	1.2e-43
WP_000165363.1|2535836_2536139_-	DUF2482 family protein	NA	A0A0F6N3N3	Staphylococcus_phage	100.0	1.4e-48
WP_000066011.1|2536232_2536394_-	DUF1270 domain-containing protein	NA	Q4ZAZ7	Staphylococcus_virus	100.0	2.5e-20
WP_000977381.1|2536386_2536608_-	hypothetical protein	NA	A0A0F6N3I2	Staphylococcus_phage	100.0	1.5e-31
WP_001094943.1|2536621_2537071_-	hypothetical protein	NA	A1KWZ2	Staphylococcus_virus	100.0	3.0e-79
WP_000187184.1|2537110_2537335_-	hypothetical protein	NA	A0A0F6N4M2	Staphylococcus_phage	100.0	3.2e-34
WP_001002757.1|2537335_2538103_-	phage antirepressor Ant	NA	A0A0F6N3N8	Staphylococcus_phage	100.0	1.1e-142
WP_000108122.1|2538102_2538297_-	helix-turn-helix transcriptional regulator	NA	A0A0F6N3M9	Staphylococcus_phage	100.0	1.1e-25
WP_001055143.1|2538559_2538892_+	helix-turn-helix transcriptional regulator	NA	R4IH08	Staphylococcus_phage	100.0	4.1e-57
WP_000775187.1|2538908_2539583_+	ImmA/IrrE family metallo-endopeptidase	NA	A0A0F6N3H6	Staphylococcus_phage	100.0	4.9e-126
WP_000661437.1|2539610_2540336_+	hypothetical protein	NA	A0A0F6N4L7	Staphylococcus_phage	100.0	9.9e-125
WP_000392186.1|2540367_2541300_+	hypothetical protein	NA	A0EWN8	Staphylococcus_virus	100.0	3.9e-174
WP_000337826.1|2541279_2541459_-	hypothetical protein	NA	A0EWN7	Staphylococcus_virus	100.0	8.3e-25
WP_001145726.1|2541571_2542621_+|integrase	site-specific integrase	integrase	A1KWY3	Staphylococcus_virus	99.7	4.5e-203
WP_001074405.1|2542688_2544086_-	Fe-S cluster assembly protein SufB	NA	NA	NA	NA	NA
WP_001010508.1|2544236_2544701_-	SUF system NifU family Fe-S cluster assembly protein	NA	NA	NA	NA	NA
WP_001006450.1|2544690_2545941_-	cysteine desulfurase	NA	Q2XUY6	environmental_halophage	44.8	1.1e-110
2547829:2547845	attR	TGTTTTTATCTAATTTC	NA	NA	NA	NA
>prophage 7
NZ_CP029655	Staphylococcus aureus strain AR_0469 chromosome, complete genome	2857253	2631476	2645895	2857253		uncultured_Caudovirales_phage(50.0%)	14	NA	NA
WP_000616840.1|2631476_2632238_-	ABC transporter ATP-binding protein	NA	Q9EMR9	Amsacta_moorei_entomopoxvirus	31.6	6.5e-18
WP_001245577.1|2632234_2633191_-	iron chelate uptake ABC transporter family permease subunit	NA	A0A2H4J116	uncultured_Caudovirales_phage	57.8	1.2e-05
WP_000876318.1|2633177_2634149_-	ABC transporter permease	NA	A0A2H4IY97	uncultured_Caudovirales_phage	78.9	4.3e-139
WP_000499195.1|2634187_2634343_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000562498.1|2634523_2635495_-	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	A0A2H4J4P3	uncultured_Caudovirales_phage	91.3	4.2e-171
WP_000855514.1|2635612_2637718_-	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A0A2H4J2N6	uncultured_Caudovirales_phage	91.7	0.0e+00
WP_000692521.1|2637680_2638079_-	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	A0A2H4J545	uncultured_Caudovirales_phage	72.0	1.2e-52
WP_001068501.1|2638879_2639746_+	DMT family transporter	NA	NA	NA	NA	NA
WP_000930014.1|2639765_2640266_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	E7DN65	Pneumococcus_phage	71.5	5.9e-52
WP_000193751.1|2640606_2642112_+	peptide MFS transporter	NA	A0A0P0IY73	Acinetobacter_phage	32.2	2.0e-58
WP_031760357.1|2642189_2642291_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000429006.1|2642381_2643299_+	diacylglycerol kinase family lipid kinase	NA	A0A1V0SBJ0	Catovirus	22.0	2.1e-07
WP_000197262.1|2643955_2644498_-	5'-3'-deoxyribonucleotidase	NA	NA	NA	NA	NA
WP_000663030.1|2644836_2645895_-	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	26.7	7.9e-22
>prophage 8
NZ_CP029655	Staphylococcus aureus strain AR_0469 chromosome, complete genome	2857253	2657866	2665687	2857253		Pandoravirus(16.67%)	10	NA	NA
WP_001217796.1|2657866_2659018_-	anthranilate synthase component I family protein	NA	S4VNU7	Pandoravirus	35.7	6.0e-23
WP_000604514.1|2659001_2659595_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	42.9	4.4e-38
WP_000446724.1|2659945_2660614_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	57.5	9.6e-66
WP_000941336.1|2660615_2661035_+	6-carboxytetrahydropterin synthase QueD	NA	S4U060	uncultured_phage	28.7	6.3e-07
WP_001062972.1|2661038_2661752_+	7-carboxy-7-deazaguanine synthase QueE	NA	A0A1U9WRB6	Streptococcus_virus	43.5	6.5e-52
WP_000604990.1|2661850_2662435_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001093562.1|2662714_2663155_+	DM13 domain-containing protein	NA	NA	NA	NA	NA
WP_001037807.1|2663497_2663971_+	DoxX family protein	NA	NA	NA	NA	NA
WP_000149344.1|2663945_2664632_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_000244415.1|2664631_2665687_+	HAMP domain-containing histidine kinase	NA	A0A1V0SGX0	Hokovirus	29.8	3.6e-14
