The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP029667	Staphylococcus aureus strain AR_0225 chromosome, complete genome	2897877	669332	756979	2897877	protease,portal,head,tail,holin,capsid,integrase,terminase	Staphylococcus_phage(92.21%)	110	683199:683216	708131:708148
WP_000197635.1|669332_670076_-|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_000917289.1|670250_670535_+	co-chaperone GroES	NA	A0A221S386	uncultured_virus	46.2	4.7e-14
WP_000240645.1|670610_672227_+	chaperonin GroEL	NA	A0A240F779	uncultured_virus	54.7	3.4e-157
WP_000128898.1|672928_673141_+	hypothetical protein	NA	Q4ZE86	Staphylococcus_phage	74.3	1.1e-23
WP_001293058.1|673137_673728_+|terminase	terminase small subunit	terminase	Q4ZE85	Staphylococcus_phage	95.8	1.1e-97
WP_001797573.1|674045_674423_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000022887.1|674587_675031_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_001045079.1|675883_677191_-	TrkH family potassium uptake protein	NA	NA	NA	NA	NA
WP_000825510.1|677351_678263_+	iron-hydroxamate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_000812010.1|678324_679170_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_000206639.1|679541_680765_-	ArgE/DapE family deacylase	NA	NA	NA	NA	NA
WP_000791407.1|681199_682255_+	bi-component leukocidin LukGH subunit H	NA	A0A1X9IGW5	Staphylococcus_phage	34.3	2.8e-35
WP_000595324.1|682276_683293_+	bi-component leukocidin LukGH subunit G	NA	A0A2I6PER8	Staphylococcus_phage	29.0	1.1e-25
683199:683216	attL	AAAAAGAAGAAAAATTAT	NA	NA	NA	NA
WP_000857199.1|684411_685449_-|integrase	site-specific integrase	integrase	A0A1X9H022	Staphylococcus_phage	99.7	3.8e-178
WP_001549185.1|685639_686353_-	toxin MazF	NA	A0A1X9H026	Staphylococcus_phage	100.0	5.0e-129
WP_000705246.1|686430_686613_-	hypothetical protein	NA	A0A0H3U4Z4	Staphylococcus_phage	100.0	4.1e-27
WP_000591749.1|686816_687158_-	hypothetical protein	NA	A0A2I6PF04	Staphylococcus_phage	100.0	4.6e-56
WP_000759682.1|687163_688096_-	ATP-dependent helicase	NA	A0A2I6PEZ7	Staphylococcus_phage	100.0	5.7e-173
WP_001031454.1|688111_688825_-	helix-turn-helix transcriptional regulator	NA	M9NUL0	Staphylococcus_phage	100.0	1.2e-130
WP_000854072.1|688958_689222_+	helix-turn-helix transcriptional regulator	NA	A0A2I6PF09	Staphylococcus_phage	100.0	7.2e-41
WP_001025404.1|689237_689453_+	DUF2829 domain-containing protein	NA	A0A0H3U4C7	Staphylococcus_phage	100.0	4.8e-35
WP_000180411.1|689441_689771_-	hypothetical protein	NA	A0A0H3U4Z1	Staphylococcus_phage	100.0	4.6e-53
WP_001148642.1|689821_690574_+	oxidoreductase	NA	A0A0H3U319	Staphylococcus_phage	100.0	5.6e-139
WP_000549548.1|690762_690993_-	hypothetical protein	NA	A0A0H3U2T9	Staphylococcus_phage	100.0	9.4e-37
WP_001120199.1|691051_691372_+	DUF771 domain-containing protein	NA	A0A0H3U4C3	Staphylococcus_phage	100.0	1.5e-56
WP_001285960.1|691368_691530_+	DUF1270 domain-containing protein	NA	A0A0H3U4Y7	Staphylococcus_phage	100.0	3.8e-21
WP_001549178.1|691624_691885_+	DUF2482 family protein	NA	A0A0H3U2W4	Staphylococcus_phage	100.0	9.3e-41
WP_000291513.1|691924_692185_+	DUF1108 family protein	NA	A0A0H3U2T6	Staphylococcus_phage	100.0	6.8e-44
WP_001205732.1|692193_692457_+	hypothetical protein	NA	A0A2I6PDG2	Staphylococcus_phage	100.0	7.7e-43
WP_000700561.1|692465_694409_+	AAA family ATPase	NA	A0A2I6PDH3	Staphylococcus_phage	94.7	0.0e+00
WP_000138475.1|694410_695331_+	recombinase	NA	A0A2I6PDH5	Staphylococcus_phage	100.0	2.3e-166
WP_071665632.1|695411_696029_+	MBL fold metallo-hydrolase	NA	A0A0H3U2T4	Staphylococcus_phage	100.0	4.1e-87
WP_000934753.1|696029_696500_+	single-stranded DNA-binding protein	NA	A0A0H3U4B5	Staphylococcus_phage	100.0	4.4e-81
WP_000148333.1|696529_697423_+	DnaD domain-containing protein	NA	A0A1P8L6F0	Staphylococcus_phage	100.0	3.2e-141
WP_000338530.1|697429_697648_+	hypothetical protein	NA	A0A2I6PDG4	Staphylococcus_phage	100.0	1.0e-37
WP_000401977.1|697656_698061_+	RusA family crossover junction endodeoxyribonuclease	NA	A0A0H3U2W2	Staphylococcus_phage	100.0	1.4e-72
WP_000101288.1|698073_698442_+	hypothetical protein	NA	A0A0H3U2T3	Staphylococcus_phage	100.0	2.0e-49
WP_000131383.1|698445_698688_+	hypothetical protein	NA	A0A0H3U4B0	Staphylococcus_phage	100.0	1.1e-40
WP_001549172.1|698696_699068_+	hypothetical protein	NA	A0A0H3U4X7	Staphylococcus_phage	97.3	4.7e-54
WP_001065101.1|699060_699297_+	DUF1024 family protein	NA	A0A0H3U313	Staphylococcus_phage	100.0	5.3e-35
WP_000700108.1|699286_699529_+	hypothetical protein	NA	A0A2I6PF40	Staphylococcus_phage	100.0	3.7e-36
WP_000181819.1|699521_700055_+	dUTP pyrophosphatase	NA	A0A0H3U2T1	Staphylococcus_phage	100.0	1.6e-95
WP_001282074.1|700091_700337_+	hypothetical protein	NA	A0A2I6PDW7	Staphylococcus_phage	100.0	5.0e-36
WP_000195803.1|700333_700540_+	DUF1381 domain-containing protein	NA	A0A0H3U2R7	Staphylococcus_phage	100.0	1.3e-29
WP_000592207.1|700536_700923_+	hypothetical protein	NA	W5R986	Staphylococcus_phage	100.0	3.0e-64
WP_000595265.1|700919_701069_+	transcriptional activator RinB	NA	A0A1W6JPZ2	Staphylococcus_phage	100.0	4.8e-18
WP_000265043.1|701068_701269_+	DUF1514 family protein	NA	A0A2I6PDV9	Staphylococcus_phage	100.0	1.4e-28
WP_000590122.1|701296_701713_+	hypothetical protein	NA	G4KNP7	Staphylococcus_phage	100.0	1.3e-76
WP_000988336.1|701944_702244_+	HNH endonuclease	NA	A0EWY8	Staphylococcus_phage	100.0	4.6e-52
WP_000402904.1|702373_702718_+	hypothetical protein	NA	G4KNP9	Staphylococcus_phage	100.0	9.4e-57
WP_110230798.1|702714_704376_+|terminase	terminase large subunit	terminase	A0A2I6PDJ8	Staphylococcus_phage	99.8	0.0e+00
WP_000025274.1|704391_705579_+|portal	phage portal protein	portal	A0A2I6PDI1	Staphylococcus_phage	100.0	1.0e-219
WP_000642728.1|705562_706300_+|protease	Clp protease ClpP	protease	G4KNQ2	Staphylococcus_phage	100.0	1.8e-129
WP_000154559.1|706323_707469_+|capsid	phage major capsid protein	capsid	G4KNQ3	Staphylococcus_phage	100.0	9.6e-215
WP_000238236.1|707488_707773_+	hypothetical protein	NA	A0A2I6PDJ3	Staphylococcus_phage	100.0	1.8e-45
WP_000150936.1|707762_708047_+|head,tail	phage head-tail adapter protein	head,tail	A0A2I6PDJ5	Staphylococcus_phage	100.0	2.3e-45
WP_000755150.1|708030_708393_+|head,tail	head-tail adaptor protein	head,tail	G4KNQ4	Staphylococcus_phage	100.0	4.4e-65
708131:708148	attR	AAAAAGAAGAAAAATTAT	NA	NA	NA	NA
WP_000114229.1|708389_708794_+	hypothetical protein	NA	A0A0H3U2V1	Staphylococcus_phage	100.0	8.7e-70
WP_000565500.1|708790_709195_+	hypothetical protein	NA	G4KNQ6	Staphylococcus_phage	95.5	1.4e-67
WP_000260578.1|709198_709843_+|tail	phage tail protein	tail	A0A0H3U4E6	Staphylococcus_phage	100.0	6.5e-120
WP_094969769.1|709869_710109_+	hypothetical protein	NA	A0A075LYE8	Staphylococcus_phage	94.6	4.0e-30
WP_001096354.1|710158_710509_+	hypothetical protein	NA	A0A0H3U503	Staphylococcus_phage	100.0	1.3e-58
WP_001549166.1|710753_715283_+|tail	phage tail tape measure protein	tail	A0A1X9H084	Staphylococcus_phage	95.0	0.0e+00
WP_000567394.1|715279_716764_+|tail	phage tail protein	tail	A0A0H3U501	Staphylococcus_phage	100.0	2.0e-297
WP_110230799.1|716779_720565_+	hypothetical protein	NA	A0A1X9H0H3	Staphylococcus_phage	98.4	0.0e+00
WP_001153681.1|720554_720707_+	hypothetical protein	NA	D2JLG0	Staphylococcus_phage	100.0	5.2e-20
WP_001040261.1|720753_721041_+	hypothetical protein	NA	D2JLG1	Staphylococcus_phage	100.0	1.3e-43
WP_000539688.1|721098_721395_+	DUF2951 domain-containing protein	NA	D2JLG2	Staphylococcus_phage	100.0	2.9e-46
WP_011447039.1|721544_721721_+|holin	putative holin-like toxin	holin	D2JLG3	Staphylococcus_phage	98.3	2.2e-22
WP_001791821.1|721773_721881_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000611512.1|721932_722187_+|holin	phage holin	holin	D2JLG4	Staphylococcus_phage	100.0	4.1e-41
WP_000861038.1|722198_722954_+	CHAP domain-containing protein	NA	D2JLG5	Staphylococcus_phage	100.0	3.4e-152
WP_000919350.1|723144_723636_+	staphylokinase	NA	A0A1X9H028	Staphylococcus_phage	100.0	9.5e-87
WP_020444758.1|724162_724621_+	amidase	NA	R9QTN8	Staphylococcus_phage	98.7	4.9e-85
WP_000727649.1|724715_725165_-	chemotaxis-inhibiting protein CHIPS	NA	A0A1P8L6A8	Staphylococcus_phage	100.0	1.1e-78
WP_000702263.1|725849_726200_+	complement inhibitor SCIN-A	NA	A0A1P8L6B0	Staphylococcus_phage	100.0	7.5e-54
WP_001791826.1|726252_726513_-	hypothetical protein	NA	M9NS66	Staphylococcus_phage	100.0	2.3e-23
WP_000669789.1|726823_727003_-	hypothetical protein	NA	A0A1W6JQ29	Staphylococcus_phage	100.0	2.2e-25
WP_001549158.1|727960_729715_+	MAP domain-containing protein	NA	NA	NA	NA	NA
WP_001068542.1|730339_731626_-	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_000990056.1|731825_731924_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000681968.1|732166_732343_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000691584.1|732606_732987_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000991302.1|732983_733880_+	phenol-soluble modulin export ABC transporter ATP-binding protein PmtA	NA	A0A2H4PQG7	Staphylococcus_phage	30.2	1.1e-16
WP_000645727.1|733880_734561_+	phenol-soluble modulin export ABC transporter permease subunit PmtB	NA	NA	NA	NA	NA
WP_000763048.1|734557_735430_+	phenol-soluble modulin export ABC transporter ATP-binding protein PmtC	NA	A0A2H4PQG7	Staphylococcus_phage	35.2	6.1e-28
WP_001221651.1|735429_736170_+	phenol-soluble modulin export ABC transporter permease subunit PmtD	NA	NA	NA	NA	NA
WP_000182842.1|736235_736799_-	thioredoxin family protein	NA	NA	NA	NA	NA
WP_000966288.1|736919_737444_+	membrane protein	NA	NA	NA	NA	NA
WP_001033971.1|737503_738061_+	DUF1700 domain-containing protein	NA	NA	NA	NA	NA
WP_000713072.1|738057_738900_+	DUF4097 family beta strand repeat protein	NA	NA	NA	NA	NA
WP_001188077.1|738956_739997_-	linear amide C-N hydrolase	NA	NA	NA	NA	NA
WP_000267034.1|740447_740621_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000205106.1|741193_741595_-	YolD-like family protein	NA	U3PG23	Staphylococcus_phage	42.9	6.0e-23
WP_000181322.1|741864_742893_+	lactonase family protein	NA	NA	NA	NA	NA
WP_001021214.1|743012_744392_-	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_001790680.1|744443_744617_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001140871.1|744811_745741_-	manganese-dependent inorganic pyrophosphatase	NA	NA	NA	NA	NA
WP_000149686.1|745793_746354_-	cysteine hydrolase	NA	G3MA16	Bacillus_virus	41.2	2.0e-32
WP_000275730.1|746725_747823_+	pectate lyase	NA	U5PWM6	Bacillus_phage	34.6	1.9e-47
WP_000323167.1|748027_749590_+	SLC13 family permease	NA	NA	NA	NA	NA
WP_001802312.1|749600_749708_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001177817.1|749779_750574_-	prephenate dehydratase	NA	NA	NA	NA	NA
WP_000897635.1|750593_751670_-	nitric oxide synthase oxygenase	NA	NA	NA	NA	NA
WP_000284431.1|751853_753323_+	nicotinate phosphoribosyltransferase	NA	G3MA18	Bacillus_virus	45.1	4.5e-108
WP_000040873.1|753315_754137_+	ammonia-dependent NAD(+) synthetase	NA	G3MA24	Bacillus_virus	52.7	1.8e-69
WP_000011538.1|754407_755010_+	DUF2179 domain-containing protein	NA	NA	NA	NA	NA
WP_000669862.1|754990_755164_+	NETI motif-containing protein	NA	NA	NA	NA	NA
WP_000434933.1|755455_755782_-	staphostatin A	NA	NA	NA	NA	NA
WP_000827748.1|755812_756979_-|protease	cysteine protease staphopain A	protease	NA	NA	NA	NA
>prophage 2
NZ_CP029667	Staphylococcus aureus strain AR_0225 chromosome, complete genome	2897877	792388	866827	2897877	portal,transposase,tail,holin,capsid,tRNA,terminase,head,plate,integrase	Staphylococcus_phage(74.29%)	93	784227:784244	811264:811281
784227:784244	attL	ATCATCATCTTGTTCGTC	NA	NA	NA	NA
WP_001145716.1|792388_793435_-|integrase	site-specific integrase	integrase	Q38045	Staphylococcus_phage	99.4	6.1e-200
WP_000337827.1|793547_793727_+	hypothetical protein	NA	Q4ZBP0	Staphylococcus_phage	100.0	3.7e-25
WP_000392183.1|793706_794639_-	hypothetical protein	NA	A0EX19	Staphylococcus_virus	100.0	6.7e-174
WP_000705242.1|794778_794946_-	hypothetical protein	NA	Q4ZDJ4	Staphylococcus_virus	98.2	3.0e-24
WP_000358224.1|795015_795735_-	helix-turn-helix transcriptional regulator	NA	A0A2H4PQQ2	Staphylococcus_phage	100.0	1.3e-132
WP_001198673.1|795876_796095_+	helix-turn-helix transcriptional regulator	NA	Q8SDX1	Staphylococcus_phage	100.0	2.9e-35
WP_001148564.1|796110_796899_+	phage antirepressor KilAC domain-containing protein	NA	R9QSV3	Staphylococcus_phage	99.2	1.0e-143
WP_001148857.1|796915_797110_+	hypothetical protein	NA	A0A1X9H0A2	Staphylococcus_phage	98.4	3.3e-19
WP_001555746.1|797140_797356_+	hypothetical protein	NA	E9LT76	Staphylococcus_phage	98.6	5.0e-32
WP_000122244.1|797311_797557_-	hypothetical protein	NA	E9LT77	Staphylococcus_phage	97.5	1.0e-36
WP_000594790.1|797627_797849_+	hypothetical protein	NA	A0A1X9H0Q4	Staphylococcus_phage	100.0	1.5e-31
WP_000066011.1|797841_798003_+	DUF1270 domain-containing protein	NA	Q4ZAZ7	Staphylococcus_virus	100.0	2.5e-20
WP_000291098.1|798096_798357_+	DUF1108 family protein	NA	Q4ZBM7	Staphylococcus_phage	97.7	2.9e-42
WP_000815401.1|798366_798588_+	DUF2483 family protein	NA	A7TWM6	Staphylococcus_phage	100.0	3.2e-34
WP_000139741.1|798580_799360_+	ATP-binding protein	NA	Q9G028	Staphylococcus_virus	99.6	7.4e-142
WP_011447037.1|799443_799944_+	single-strand DNA-binding protein	NA	A7TWM8	Staphylococcus_phage	100.0	7.2e-90
WP_110230801.1|799956_800622_+	hypothetical protein	NA	Q4ZDY3	Staphylococcus_virus	99.5	5.3e-125
WP_000240901.1|800621_801401_+	AP2 domain-containing protein	NA	A0A2H4J5K3	uncultured_Caudovirales_phage	46.1	7.3e-49
WP_000504989.1|801372_802176_+	hypothetical protein	NA	A0A2H4JCF5	uncultured_Caudovirales_phage	99.6	2.5e-121
WP_000803043.1|802185_802959_+	ATP-binding protein	NA	A0A2H4PQI3	Staphylococcus_phage	98.4	3.3e-142
WP_000256593.1|802952_803111_+	hypothetical protein	NA	Q4ZBL5	Staphylococcus_phage	96.2	9.9e-22
WP_001123673.1|803123_803345_+	DUF3269 family protein	NA	A7TWN4	Staphylococcus_phage	100.0	1.3e-35
WP_000049807.1|803354_803759_+	DUF1064 domain-containing protein	NA	A7TWN5	Staphylococcus_phage	97.8	3.0e-70
WP_001187254.1|803763_803949_+	DUF3113 family protein	NA	Q4ZA46	Staphylococcus_virus	100.0	4.1e-27
WP_000536055.1|803949_804312_+	hypothetical protein	NA	B7T0B4	Staphylococcus_virus	75.8	3.5e-46
WP_000111494.1|804311_804566_+	DUF3310 domain-containing protein	NA	A0A2I6PDN8	Staphylococcus_phage	97.6	6.3e-42
WP_000177804.1|804565_804814_+	hypothetical protein	NA	A0A2I6PF06	Staphylococcus_phage	96.3	1.5e-40
WP_000370296.1|804985_805222_+	DUF1024 family protein	NA	A0A2I6PF11	Staphylococcus_phage	100.0	4.0e-35
WP_000700108.1|805211_805454_+	hypothetical protein	NA	A0A2I6PF40	Staphylococcus_phage	100.0	3.7e-36
WP_000181815.1|805446_805956_+	dUTP pyrophosphatase	NA	Q8SDV3	Staphylococcus_phage	98.8	2.8e-89
WP_000120374.1|805992_806238_+	hypothetical protein	NA	A9CR89	Staphylococcus_phage	100.0	6.5e-28
WP_000195831.1|806234_806471_+	DUF1381 domain-containing protein	NA	C8CH06	Staphylococcus_phage	100.0	1.1e-35
WP_000483477.1|806495_806732_+	hypothetical protein	NA	A7TWB3	Staphylococcus_phage	100.0	1.9e-37
WP_001798144.1|806715_807108_+	hypothetical protein	NA	A0A2I6PDC1	Staphylococcus_phage	100.0	2.8e-65
WP_000595244.1|807107_807281_+	transcriptional activator RinB	NA	S4SVE4	Staphylococcus_phage	100.0	6.4e-22
WP_000990005.1|807281_807428_+	hypothetical protein	NA	B2ZYX7	Staphylococcus_phage	100.0	2.2e-15
WP_000162699.1|807451_807874_+	RinA family phage transcriptional activator	NA	Q8SDV1	Staphylococcus_phage	100.0	1.6e-74
WP_001003272.1|808060_808501_+|terminase	terminase small subunit	terminase	Q8SDV0	Staphylococcus_phage	100.0	2.8e-74
WP_000169944.1|808487_809765_+|terminase	PBSX family phage terminase large subunit	terminase	Q8SDU9	Staphylococcus_phage	100.0	3.0e-249
WP_000921891.1|809775_811311_+|portal	phage portal protein	portal	Q4ZDV9	Staphylococcus_virus	99.8	1.5e-292
811264:811281	attR	GACGAACAAGATGATGAT	NA	NA	NA	NA
WP_001555735.1|811317_812313_+|capsid	minor capsid protein	capsid	Q4ZDV8	Staphylococcus_virus	100.0	5.8e-184
WP_000072206.1|812385_812556_+	hypothetical protein	NA	Q4ZDV7	Staphylococcus_virus	100.0	3.3e-23
WP_000392140.1|812664_813285_+	DUF4355 domain-containing protein	NA	Q8SDU6	Staphylococcus_phage	100.0	6.4e-64
WP_000438502.1|813298_814273_+|capsid	phage major capsid protein	capsid	Q8SDU5	Staphylococcus_phage	100.0	1.3e-183
WP_001114091.1|814294_814582_+	hypothetical protein	NA	Q8SDU4	Staphylococcus_phage	100.0	6.2e-46
WP_000208960.1|814590_814923_+|head,tail	phage head-tail connector protein	head,tail	A0A0F6N3F4	Staphylococcus_phage	100.0	5.5e-54
WP_001268312.1|814919_815222_+	hypothetical protein	NA	A4ZFB6	Staphylococcus_virus	100.0	1.1e-50
WP_001017815.1|815221_815569_+	HK97 gp10 family phage protein	NA	A0A0F6N3F5	Staphylococcus_phage	100.0	4.1e-60
WP_000188649.1|815580_815964_+	hypothetical protein	NA	A0A0F6N3L1	Staphylococcus_phage	100.0	1.5e-68
WP_000002577.1|815982_816564_+|tail	phage major tail protein, TP901-1 family	tail	A0A0F6N3L8	Staphylococcus_phage	100.0	4.9e-106
WP_001100163.1|816625_816991_+	hypothetical protein	NA	Q8SDT9	Staphylococcus_phage	100.0	2.8e-59
WP_000105584.1|817020_817365_+	hypothetical protein	NA	A0A0F6N3F7	Staphylococcus_phage	100.0	2.5e-57
WP_000141463.1|817381_820849_+	hypothetical protein	NA	Q4ZDU6	Staphylococcus_virus	99.6	1.1e-282
WP_000350683.1|820861_821809_+|tail	phage tail family protein	tail	B2ZYZ5	Staphylococcus_phage	100.0	3.6e-183
WP_000156895.1|821817_823719_+	peptidase	NA	Q8SDT5	Staphylococcus_phage	99.7	0.0e+00
WP_000369020.1|823733_825644_+	hypothetical protein	NA	Q4ZDD6	Staphylococcus_virus	99.2	0.0e+00
WP_000259591.1|825643_827467_+|plate	BppU family phage baseplate upper protein	plate	A0A0H3U4S6	Staphylococcus_phage	99.3	0.0e+00
WP_000705907.1|827466_827844_+	DUF2977 domain-containing protein	NA	Q4ZDT8	Staphylococcus_virus	99.2	8.1e-54
WP_001800921.1|827847_828021_+	XkdX family protein	NA	A0A059T7K6	Staphylococcus_phage	100.0	1.3e-27
WP_000466779.1|828061_828361_+	DUF2951 domain-containing protein	NA	A0A0F6N3M6	Staphylococcus_phage	99.0	1.3e-46
WP_000524058.1|828497_830396_+	CHAP domain-containing protein	NA	S4V9N2	Staphylococcus_phage	98.9	0.0e+00
WP_000276624.1|830408_831581_+|plate	BppU family phage baseplate upper protein	plate	S4V7L6	Staphylococcus_phage	100.0	3.8e-198
WP_000398882.1|831586_831982_+	hypothetical protein	NA	S4V997	Staphylococcus_phage	100.0	1.6e-68
WP_000354135.1|832037_832475_+|holin	phage holin	holin	S4V690	Staphylococcus_phage	100.0	1.2e-72
WP_001148142.1|832455_833901_+	CHAP domain-containing protein	NA	S4V6E6	Staphylococcus_phage	100.0	1.8e-295
WP_001788502.1|834143_834296_+	hypothetical protein	NA	A0A0F6N3H2	Staphylococcus_phage	100.0	3.1e-20
WP_000139423.1|834366_834477_+	hypothetical protein	NA	W5R8J7	Staphylococcus_phage	100.0	1.7e-12
WP_000382163.1|834463_834664_+	hypothetical protein	NA	W5R9N2	Staphylococcus_phage	100.0	3.7e-29
WP_011447034.1|834989_835091_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001005407.1|835417_835579_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000163283.1|835709_836225_+	type 1 glutamine amidotransferase	NA	NA	NA	NA	NA
WP_000830380.1|836565_837375_+	monofunctional peptidoglycan glycosyltransferase SgtB	NA	NA	NA	NA	NA
WP_001124419.1|837635_838454_+	recombination regulator RecX	NA	NA	NA	NA	NA
WP_001294033.1|838455_838746_+	YfhH family protein	NA	NA	NA	NA	NA
WP_000535834.1|838760_840278_+	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_000886468.1|840286_841123_+	membrane protein	NA	NA	NA	NA	NA
WP_000379098.1|841383_842361_-	metal-dependent hydrolase	NA	NA	NA	NA	NA
WP_000284752.1|842512_843550_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
WP_000251253.1|843851_844394_+	DUF402 domain-containing protein	NA	NA	NA	NA	NA
WP_000597238.1|844684_846421_+	SAV1866 family putative multidrug efflux ABC transporter	NA	W8CYL7	Bacillus_phage	30.4	1.7e-53
WP_001791878.1|846429_846522_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001236371.1|846611_847706_-	aromatic acid exporter family protein	NA	NA	NA	NA	NA
WP_001011598.1|847998_849288_-	glutamate-1-semialdehyde 2,1-aminomutase	NA	NA	NA	NA	NA
WP_000939521.1|849368_849824_+	thioredoxin-dependent thiol peroxidase	NA	NA	NA	NA	NA
WP_000869455.1|849829_850780_+	2-hydroxyacid dehydrogenase	NA	NA	NA	NA	NA
WP_000110011.1|850876_851323_+	peroxide-responsive transcriptional repressor PerR	NA	NA	NA	NA	NA
WP_031784974.1|859639_859753_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001549130.1|859728_861090_-|transposase	ISL3 family transposase	transposase	NA	NA	NA	NA
WP_000063582.1|861582_862644_+	PTS transporter subunit IIC	NA	NA	NA	NA	NA
WP_000649907.1|862901_864359_+	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_001144055.1|864345_865074_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	42.7	1.0e-36
WP_001789049.1|865209_866352_+|tRNA	tRNA epoxyqueuosine(34) reductase QueG	tRNA	NA	NA	NA	NA
WP_000181398.1|866356_866827_+|tRNA	tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL	tRNA	NA	NA	NA	NA
>prophage 3
NZ_CP029667	Staphylococcus aureus strain AR_0225 chromosome, complete genome	2897877	897370	960330	2897877	protease,transposase	Staphylococcus_phage(96.23%)	66	NA	NA
WP_000473596.1|897370_898306_+	beta-channel forming cytolysin	NA	A0A2H4PQI5	Staphylococcus_phage	100.0	1.4e-174
WP_000782464.1|898307_899291_+	bi-component leukocidin LukED subunit D	NA	A0A2H4PQH7	Staphylococcus_phage	99.1	2.3e-185
WP_000416759.1|899532_899676_+	gallidermin/nisin family lantibiotic	NA	NA	NA	NA	NA
WP_000416756.1|900412_900556_+	gallidermin/nisin family lantibiotic	NA	A0A2H4PQH4	Staphylococcus_phage	80.9	5.3e-14
WP_001092605.1|900620_903614_+	lantibiotic dehydratase	NA	A0A2H4PQG8	Staphylococcus_phage	97.3	0.0e+00
WP_000566596.1|903606_904851_+	lanthionine synthetase C family protein	NA	A0A2H4PQH9	Staphylococcus_phage	100.0	5.1e-238
WP_000504439.1|904866_905385_+	enterotoxin	NA	A0A2H4PQG9	Staphylococcus_phage	100.0	2.0e-95
WP_000691541.1|905394_906768_+	S8 family serine peptidase	NA	A0A2H4PQH1	Staphylococcus_phage	100.0	2.9e-258
WP_001096791.1|906790_907483_+	lantibiotic protection ABC transporter ATP-binding subunit	NA	A0A2H4PQG7	Staphylococcus_phage	100.0	6.2e-124
WP_000581552.1|907479_908241_+	lantibiotic immunity ABC transporter MutE/EpiE family permease subunit	NA	A0A2H4PQH2	Staphylococcus_phage	100.0	4.4e-131
WP_000586140.1|908237_908936_+	hypothetical protein	NA	A0A2H4PQH0	Staphylococcus_phage	94.4	3.8e-113
WP_001092763.1|909409_909976_-	DUF4888 domain-containing protein	NA	A0A2H4PQH6	Staphylococcus_phage	100.0	3.3e-99
WP_001039435.1|910939_911647_+|protease	serine protease SplA	protease	A0A2H4PQN3	Staphylococcus_phage	100.0	2.6e-130
WP_001039447.1|911771_912494_+|protease	serine protease SplB	protease	A0A2H4PQN0	Staphylococcus_phage	99.6	2.4e-131
WP_001038867.1|912551_913271_+|protease	serine protease SplC	protease	A0A2H4PQP7	Staphylococcus_phage	99.2	1.2e-130
WP_001038704.1|913391_914111_+|protease	serine protease SplD	protease	A0A2H4PQP9	Staphylococcus_phage	99.6	4.6e-130
WP_011447030.1|914059_914167_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001038759.1|914268_914985_+|protease	serine protease SplE	protease	A0A2H4PQN5	Staphylococcus_phage	100.0	1.1e-131
WP_001038688.1|915135_915855_+|protease	serine protease SplF	protease	A0A2H4PQP1	Staphylococcus_phage	100.0	1.1e-131
WP_001791797.1|915919_916054_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011443644.1|916034_917774_+	type I restriction-modification system subunit M	NA	A0A2H4PQP4	Staphylococcus_phage	99.4	4.4e-288
WP_000072576.1|917766_918966_+	restriction endonuclease subunit S	NA	A0A2H4PQP5	Staphylococcus_phage	99.7	5.5e-229
WP_000831218.1|919815_923928_+	SMEK domain-containing protein	NA	A0A2H4PQT3	Staphylococcus_phage	100.0	0.0e+00
WP_002868972.1|924466_924826_+	DUF1433 domain-containing protein	NA	NA	NA	NA	NA
WP_001791893.1|925173_925275_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001801861.1|925397_925493_-	type I toxin-antitoxin system Fst family toxin PepA1	NA	NA	NA	NA	NA
WP_001549059.1|925695_925839_+|transposase	transposase	transposase	A0A2H4PQU1	Staphylococcus_phage	100.0	6.4e-20
WP_000070811.1|926442_926826_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000375476.1|926836_927013_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000809857.1|927014_927200_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000494956.1|927313_927955_+	ImmA/IrrE family metallo-endopeptidase	NA	A0A2H4PQN8	Staphylococcus_phage	93.2	2.6e-76
WP_000414205.1|928172_928724_-	hypothetical protein	NA	A0A2H4PQN4	Staphylococcus_phage	94.1	1.0e-20
WP_000627551.1|928821_929166_-	DUF3969 family protein	NA	A0A2H4PQN6	Staphylococcus_phage	92.0	6.3e-53
WP_000188802.1|929206_929677_-	hypothetical protein	NA	A0A2H4PQM7	Staphylococcus_phage	80.1	7.0e-63
WP_000669037.1|929677_929833_-	hypothetical protein	NA	A0A2H4PQM7	Staphylococcus_phage	96.9	4.7e-08
WP_000070653.1|929908_930904_-	DUF4352 domain-containing protein	NA	A0A2H4PQN2	Staphylococcus_phage	96.4	7.1e-73
WP_001795535.1|930984_931635_-	calcium-binding protein	NA	A0A2H4PQM8	Staphylococcus_phage	88.4	2.7e-44
WP_011443643.1|931937_932393_+	DUF4909 domain-containing protein	NA	A0A2H4PQN7	Staphylococcus_phage	98.6	3.0e-79
WP_000348360.1|932551_934030_+	o-succinylbenzoate--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	97.0	2.0e-281
WP_000778523.1|934034_935036_+	o-succinylbenzoate synthase	NA	A0A2H4PQM0	Staphylococcus_phage	97.6	4.8e-186
WP_000718107.1|935032_935290_-	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	100.0	7.2e-46
WP_000672014.1|935355_935829_+	nucleoside triphosphatase YtkD	NA	A0A2H4PQM4	Staphylococcus_phage	98.1	4.7e-83
WP_002868962.1|935833_936580_+	S9 family peptidase	NA	A0A2H4PQM6	Staphylococcus_phage	98.4	7.1e-142
WP_000109906.1|937575_939168_-	phosphoenolpyruvate carboxykinase (ATP)	NA	A0A2H4PQN1	Staphylococcus_phage	100.0	0.0e+00
WP_000933822.1|939538_940732_+	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	99.7	1.9e-218
WP_000366154.1|940856_941765_+	NERD domain-containing protein	NA	A0A2H4PQQ8	Staphylococcus_phage	98.7	3.2e-136
WP_000453320.1|941976_942810_+	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	98.6	9.6e-156
WP_000623471.1|944409_944763_-	CrcB family protein	NA	A0A2H4PQQ7	Staphylococcus_phage	99.1	1.0e-21
WP_001200541.1|944759_945125_-	fluoride efflux transporter CrcB	NA	A0A2H4PQR0	Staphylococcus_phage	99.2	1.4e-58
WP_000091445.1|945380_945683_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001096459.1|945942_946656_+	transaldolase	NA	M1PR54	Cyanophage	35.3	5.5e-19
WP_001168904.1|947095_947731_-|protease	CPBP family intramembrane metalloprotease SdpA	protease	NA	NA	NA	NA
WP_001030465.1|948026_948470_+	hypothetical protein	NA	A0A2H4PQT8	Staphylococcus_phage	85.0	3.0e-55
WP_031885003.1|948456_948900_-	competence protein ComK	NA	NA	NA	NA	NA
WP_000671052.1|949012_949483_-	RNA polymerase sigma factor	NA	A0A2H4PQT5	Staphylococcus_phage	99.4	1.0e-82
WP_000384171.1|949681_949906_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001032833.1|950181_951036_+	autolysin	NA	Q4ZCC7	Staphylococcus_virus	38.6	9.8e-39
WP_000163235.1|951330_951726_-	arsenate reductase (thioredoxin)	NA	A0A2H4PQT9	Staphylococcus_phage	100.0	6.3e-73
WP_000989121.1|951743_953036_-	arsenite efflux transporter membrane subunit ArsB	NA	A0A2H4PQU3	Staphylococcus_phage	99.5	5.0e-228
WP_000221179.1|953035_953350_-	winged helix-turn-helix transcriptional regulator	NA	A0A2H4PQT4	Staphylococcus_phage	100.0	2.0e-53
WP_001261677.1|953872_955375_+	FAD-dependent oxidoreductase	NA	A0A2H4PQX2	Staphylococcus_phage	100.0	2.3e-30
WP_000384181.1|955867_956899_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	99.4	4.8e-197
WP_000493892.1|956905_957538_+	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	99.5	1.7e-112
WP_001159022.1|957548_958730_+	3,4-dihydroxy-2-butanone-4-phosphate synthase	NA	A0A2H4PQS2	Staphylococcus_phage	99.7	6.6e-227
WP_001008551.1|958742_959207_+	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	99.4	5.8e-70
WP_001196354.1|959328_960330_-	proline dehydrogenase	NA	A0A2H4PQT6	Staphylococcus_phage	99.7	9.0e-185
>prophage 4
NZ_CP029667	Staphylococcus aureus strain AR_0225 chromosome, complete genome	2897877	963490	976219	2897877	tRNA	Staphylococcus_phage(100.0%)	6	NA	NA
WP_110230803.1|963490_964054_-	methyltransferase domain-containing protein	NA	A0A2H4PQV0	Staphylococcus_phage	98.9	3.2e-102
WP_000526539.1|964050_965004_-	TIGR01212 family radical SAM protein	NA	A0A2H4PQV5	Staphylococcus_phage	100.0	2.2e-79
WP_001025061.1|965113_966295_+	MFS transporter	NA	A0A2H4PQR6	Staphylococcus_phage	100.0	5.6e-218
WP_001108732.1|966585_969000_+|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	99.2	0.0e+00
WP_000836465.1|969021_969333_+	rhodanese-like domain-containing protein	NA	A0A2H4PQR9	Staphylococcus_phage	100.0	1.6e-52
WP_001050548.1|969658_976219_+	LPXTG-anchored repetitive surface protein SasC	NA	A0A2H4PQU6	Staphylococcus_phage	98.1	2.0e-304
>prophage 5
NZ_CP029667	Staphylococcus aureus strain AR_0225 chromosome, complete genome	2897877	1101678	1110721	2897877	tRNA	uncultured_Mediterranean_phage(50.0%)	7	NA	NA
WP_001005767.1|1101678_1102683_+	Holliday junction branch migration DNA helicase RuvB	NA	B3GAM6	uncultured_virus	29.1	1.7e-05
WP_001019172.1|1102684_1103710_+|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_001112045.1|1103732_1104872_+|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.7	5.4e-85
WP_001160682.1|1104890_1105151_+	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	35.3	8.2e-05
WP_000749795.1|1105425_1107705_+	protein translocase subunit SecDF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.8	1.8e-31
WP_000594993.1|1107907_1110181_+	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	28.8	1.2e-62
WP_000364542.1|1110202_1110721_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	46.5	5.6e-29
>prophage 6
NZ_CP029667	Staphylococcus aureus strain AR_0225 chromosome, complete genome	2897877	1179858	1188170	2897877	tRNA	Caulobacter_phage(16.67%)	7	NA	NA
WP_001217261.1|1179858_1181658_+	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	36.0	4.6e-54
WP_001283055.1|1181881_1182988_+	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	38.1	1.1e-37
WP_000624584.1|1183118_1183796_+|tRNA	tRNA (adenine-N(1))-methyltransferase	tRNA	NA	NA	NA	NA
WP_000683931.1|1183798_1184899_+	Nif3-like dinuclear metal center hexameric protein	NA	A0A1S5V250	Saudi_moumouvirus	29.6	5.2e-08
WP_001062180.1|1185012_1186359_+	DEAD/DEAH box helicase	NA	A0A1V0SIR5	Klosneuvirus	33.7	5.3e-55
WP_000924214.1|1186368_1187259_+	deoxyribonuclease IV	NA	A0A2H4UU70	Bodo_saltans_virus	33.1	2.0e-26
WP_001213908.1|1187384_1188170_+	metal ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.3	8.0e-19
>prophage 7
NZ_CP029667	Staphylococcus aureus strain AR_0225 chromosome, complete genome	2897877	1244001	1286899	2897877	protease,portal,tail,holin,terminase,plate,integrase	Staphylococcus_phage(96.43%)	58	1248964:1248984	1286565:1286585
WP_000987769.1|1244001_1245753_+	HAMP domain-containing protein	NA	A0A1V0SGX0	Hokovirus	33.6	1.7e-21
WP_001548912.1|1245997_1246927_+	DUF1672 domain-containing protein	NA	NA	NA	NA	NA
WP_001033767.1|1246919_1247765_+	hypothetical protein	NA	NA	NA	NA	NA
WP_110230807.1|1247791_1248946_+	hypothetical protein	NA	B5WZK7	Staphylococcus_phage	97.2	1.5e-114
1248964:1248984	attL	AGGGCAAAAAAAGGGCGGATT	NA	NA	NA	NA
WP_000264751.1|1248988_1250194_-|integrase	site-specific integrase	integrase	A0A2I6PEN0	Staphylococcus_phage	100.0	7.7e-223
WP_000191466.1|1250319_1250934_+	hypothetical protein	NA	A0A2I6PEZ0	Staphylococcus_phage	100.0	6.7e-106
WP_001795334.1|1250930_1251077_-	hypothetical protein	NA	A0A2I6PEK8	Staphylococcus_phage	100.0	1.2e-16
WP_000449655.1|1251166_1251562_-	hypothetical protein	NA	A0A2I6PEJ7	Staphylococcus_phage	100.0	3.8e-70
WP_000755722.1|1251590_1252025_-	hypothetical protein	NA	A0A2I6PEM0	Staphylococcus_phage	96.5	3.6e-21
WP_000525001.1|1252042_1252504_-	hypothetical protein	NA	A0A2I6PEK4	Staphylococcus_phage	98.7	2.9e-85
WP_000429766.1|1252516_1252846_-	helix-turn-helix transcriptional regulator	NA	A0A2I6PEN2	Staphylococcus_phage	100.0	3.2e-54
WP_001115060.1|1253006_1253198_+	helix-turn-helix transcriptional regulator	NA	A0A2I6PEL6	Staphylococcus_phage	100.0	2.3e-28
WP_001548903.1|1253454_1253694_-	hypothetical protein	NA	A0A2I6PE22	Staphylococcus_phage	100.0	6.7e-38
WP_001036299.1|1253740_1253956_+	hypothetical protein	NA	A0A2I6PEK7	Staphylococcus_phage	100.0	1.0e-32
WP_001124198.1|1253980_1254244_+	helix-turn-helix domain-containing protein	NA	A0A2I6PEL8	Staphylococcus_phage	100.0	2.5e-46
WP_000829612.1|1254509_1254827_+	hypothetical protein	NA	A0A2I6PEL3	Staphylococcus_phage	100.0	1.1e-35
WP_000163431.1|1254819_1255122_+	DUF2482 family protein	NA	A0A1X9IGX2	Staphylococcus_phage	100.0	2.4e-48
WP_000291481.1|1255126_1255387_+	DUF1108 family protein	NA	A0A2I6PEM2	Staphylococcus_phage	100.0	3.4e-43
WP_000985979.1|1255400_1255763_+	hypothetical protein	NA	A0A2I6PEM7	Staphylococcus_phage	100.0	3.7e-56
WP_000762552.1|1255759_1256926_+	DUF2800 domain-containing protein	NA	A0A2I6PEL9	Staphylococcus_phage	100.0	1.4e-221
WP_000645048.1|1256951_1257509_+	DUF2815 family protein	NA	A0A2I6PEP8	Staphylococcus_phage	100.0	1.8e-97
WP_001801657.1|1257576_1259529_+	DNA polymerase	NA	A0A2I6PEL4	Staphylococcus_phage	100.0	0.0e+00
WP_001164629.1|1259541_1259727_+	DUF3113 family protein	NA	A0A2I6PEM8	Staphylococcus_phage	100.0	7.0e-27
WP_000113974.1|1259726_1260128_+	PVL family protein	NA	A0A2I6PEL5	Staphylococcus_phage	100.0	1.2e-68
WP_000022728.1|1260127_1260385_+	DUF3310 domain-containing protein	NA	A0A2I6PEN5	Staphylococcus_phage	100.0	2.6e-43
WP_000235324.1|1260387_1260588_+	hypothetical protein	NA	A0A2I6PEM3	Staphylococcus_phage	100.0	2.5e-30
WP_000132194.1|1260602_1260845_+	hypothetical protein	NA	A0A2I6PEV3	Staphylococcus_phage	100.0	1.5e-40
WP_001065039.1|1260859_1261108_+	DUF1024 family protein	NA	A0A2I6PEP2	Staphylococcus_phage	100.0	1.4e-38
WP_000185671.1|1261100_1261637_+	hypothetical protein	NA	A0A2I6PEN6	Staphylococcus_phage	100.0	1.6e-95
WP_000195794.1|1261673_1261880_+	DUF1381 domain-containing protein	NA	A0A2I6PEM9	Staphylococcus_phage	100.0	1.6e-19
WP_000141180.1|1261876_1262080_+	hypothetical protein	NA	A0A2I6PEQ8	Staphylococcus_phage	100.0	3.4e-30
WP_000608275.1|1262072_1262309_+	hypothetical protein	NA	A0A2I6PEM4	Staphylococcus_phage	100.0	2.8e-36
WP_000592202.1|1262301_1262688_+	hypothetical protein	NA	A0A1X9IGZ2	Staphylococcus_phage	100.0	3.0e-64
WP_000595263.1|1262684_1262837_+	transcriptional activator RinB	NA	A0A2I6PEM5	Staphylococcus_phage	100.0	2.0e-19
WP_000265252.1|1262904_1263105_+	DUF1514 family protein	NA	A0A2I6PEP5	Staphylococcus_phage	100.0	4.9e-26
WP_000884870.1|1263392_1265840_+	hypothetical protein	NA	A0A2I6PEP4	Staphylococcus_phage	100.0	0.0e+00
WP_001801650.1|1265948_1266047_-	hypothetical protein	NA	A0A2I6PDP6	Staphylococcus_phage	100.0	3.7e-11
WP_001548892.1|1266180_1266471_+	VRR-NUC domain-containing protein	NA	A0A2I6PE31	Staphylococcus_phage	100.0	6.5e-51
WP_001801648.1|1266451_1267819_+	DEAD/DEAH box helicase	NA	A0A2I6PE95	Staphylococcus_phage	99.8	3.0e-263
WP_000528512.1|1267831_1268269_+	transcriptional regulator	NA	A0A2I6PEN3	Staphylococcus_phage	100.0	7.9e-77
WP_000160686.1|1268425_1268740_+	HNH endonuclease	NA	A0A2I6PEN4	Staphylococcus_phage	100.0	5.0e-57
WP_000778933.1|1268866_1269172_+|terminase	terminase	terminase	A0A2I6PEQ6	Staphylococcus_phage	100.0	2.9e-49
WP_000153540.1|1269161_1270853_+|terminase	terminase large subunit	terminase	A0A1X9IGU0	Staphylococcus_phage	100.0	0.0e+00
WP_001100664.1|1270857_1272096_+|portal	phage portal protein	portal	A0A2I6PER5	Staphylococcus_phage	100.0	6.9e-235
WP_000061866.1|1272079_1272853_+|protease	Clp protease ClpP	protease	A0A2I6PEQ7	Staphylococcus_phage	100.0	2.4e-137
WP_001190533.1|1275265_1276090_+|tail	phage tail family protein	tail	A0A2I6PER3	Staphylococcus_phage	100.0	4.1e-159
WP_000384474.1|1276098_1277682_+	peptidase	NA	A0A2I6PEQ5	Staphylococcus_phage	100.0	9.3e-309
WP_000179858.1|1277681_1277972_+	hypothetical protein	NA	U5U457	Staphylococcus_phage	100.0	2.1e-49
WP_000429558.1|1277987_1279898_+	minor structural protein	NA	A0A2I6PEQ9	Staphylococcus_phage	100.0	0.0e+00
WP_000067127.1|1279897_1281364_+|plate	BppU family phage baseplate upper protein	plate	A0A2I6PES7	Staphylococcus_phage	100.0	1.5e-273
WP_001166599.1|1281363_1281753_+	DUF2977 domain-containing protein	NA	A0A2I6PER1	Staphylococcus_phage	100.0	2.2e-62
WP_000916020.1|1281745_1281910_+	XkdX family protein	NA	A0A2I6PES4	Staphylococcus_phage	100.0	4.9e-24
WP_000466784.1|1281955_1282255_+	DUF2951 domain-containing protein	NA	A0A2I6PER2	Staphylococcus_phage	100.0	2.0e-31
WP_000339146.1|1282390_1282693_+|holin	phage holin	holin	A0A2I6PET6	Staphylococcus_phage	100.0	7.0e-48
WP_000909220.1|1282703_1284158_+	CHAP domain-containing protein	NA	A0A2I6PET7	Staphylococcus_phage	100.0	5.7e-289
WP_000239545.1|1284547_1285486_+	Panton-Valentine bi-component leukocidin subunit S	NA	A0A2I6PER8	Staphylococcus_phage	100.0	3.7e-180
WP_024937002.1|1285481_1286465_+	Panton-Valentine bi-component leukocidin subunit F	NA	A0A2I6PEU3	Staphylococcus_phage	100.0	4.0e-185
WP_061390271.1|1286647_1286899_+	hypothetical protein	NA	A0ZS61	Staphylococcus_virus	100.0	2.4e-25
1286565:1286585	attR	AGGGCAAAAAAAGGGCGGATT	NA	NA	NA	NA
>prophage 8
NZ_CP029667	Staphylococcus aureus strain AR_0225 chromosome, complete genome	2897877	1764624	1773097	2897877		Synechococcus_phage(33.33%)	9	NA	NA
WP_000238664.1|1764624_1765191_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	40.1	6.1e-29
WP_000030812.1|1765193_1766222_-	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	41.4	1.3e-61
WP_000483713.1|1766214_1767699_-	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	31.7	3.2e-45
WP_000032727.1|1767677_1769867_-	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	39.7	1.0e-140
WP_000666799.1|1769859_1770531_-	phosphoribosylformylglycinamidine synthase I	NA	NA	NA	NA	NA
WP_000848350.1|1770532_1770796_-	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
WP_000174053.1|1770795_1771500_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	M4R1E8	Synechococcus_phage	42.1	7.3e-48
WP_001010412.1|1771503_1772628_-	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA	NA
WP_000861572.1|1772614_1773097_-	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	44.7	6.2e-22
>prophage 9
NZ_CP029667	Staphylococcus aureus strain AR_0225 chromosome, complete genome	2897877	2017884	2032615	2897877		uncultured_Caudovirales_phage(50.0%)	14	NA	NA
WP_000616842.1|2017884_2018646_-	ABC transporter ATP-binding protein	NA	Q9EMR9	Amsacta_moorei_entomopoxvirus	31.6	8.5e-18
WP_001245577.1|2018642_2019599_-	iron chelate uptake ABC transporter family permease subunit	NA	A0A2H4J116	uncultured_Caudovirales_phage	57.8	1.2e-05
WP_000876318.1|2019585_2020557_-	ABC transporter permease	NA	A0A2H4IY97	uncultured_Caudovirales_phage	78.9	4.3e-139
WP_000499195.1|2020595_2020751_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000562498.1|2021264_2022236_-	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	A0A2H4J4P3	uncultured_Caudovirales_phage	91.3	4.2e-171
WP_000855505.1|2022353_2024459_-	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A0A2H4J2N6	uncultured_Caudovirales_phage	91.7	0.0e+00
WP_000692521.1|2024421_2024820_-	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	A0A2H4J545	uncultured_Caudovirales_phage	72.0	1.2e-52
WP_001068497.1|2025620_2026487_+	DMT family transporter	NA	NA	NA	NA	NA
WP_000930014.1|2026506_2027007_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	E7DN65	Pneumococcus_phage	71.5	5.9e-52
WP_000193752.1|2027347_2028853_+	peptide MFS transporter	NA	A0A0P0IY73	Acinetobacter_phage	32.2	2.0e-58
WP_001790641.1|2028930_2029032_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000429014.1|2029122_2030040_+	diacylglycerol kinase family lipid kinase	NA	A0A1V0SBJ0	Catovirus	22.0	3.7e-07
WP_000197273.1|2030663_2031206_-	5'-3'-deoxyribonucleotidase	NA	NA	NA	NA	NA
WP_000663030.1|2031556_2032615_-	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	26.7	7.9e-22
>prophage 10
NZ_CP029667	Staphylococcus aureus strain AR_0225 chromosome, complete genome	2897877	2044587	2052407	2897877		Pandoravirus(16.67%)	10	NA	NA
WP_001217785.1|2044587_2045739_-	anthranilate synthase component I family protein	NA	A0A0B5J984	Pandoravirus	35.7	1.6e-23
WP_000604514.1|2045722_2046316_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	42.9	4.4e-38
WP_000446724.1|2046666_2047335_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	57.5	9.6e-66
WP_000941336.1|2047336_2047756_+	6-carboxytetrahydropterin synthase QueD	NA	S4U060	uncultured_phage	28.7	6.3e-07
WP_001062972.1|2047759_2048473_+	7-carboxy-7-deazaguanine synthase QueE	NA	A0A1U9WRB6	Streptococcus_virus	43.5	6.5e-52
WP_000637687.1|2048571_2049156_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001093553.1|2049435_2049876_+	DM13 domain-containing protein	NA	NA	NA	NA	NA
WP_001037807.1|2050217_2050691_+	DoxX family protein	NA	NA	NA	NA	NA
WP_000149344.1|2050665_2051352_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_000244412.1|2051351_2052407_+	HAMP domain-containing histidine kinase	NA	A0A1V0SGX0	Hokovirus	30.0	2.1e-14
